PLINK v1.9.0-b.8 64-bit (22 Oct 2024)
Options in effect:
  --bfile sub
  --chr 1
  --from-bp 1000000
  --ld-window 50
  --ld-window-r2 0
  --out subld
  --r2
  --to-bp 2000000

Hostname: user-H3C-UniServer-R5300-G6
Working directory: /home/wlg/MyFiles/Projects/EasyGS_answer/Q002/answer
Start time: Wed May 27 11:32:37 2026

Random number seed: 1779852757
2063880 MB RAM detected; reserving 1031940 MB for main workspace.
70 out of 2668862 variants loaded from .bim file.
450 people (0 males, 0 females, 450 ambiguous) loaded from .fam.
Ambiguous sex IDs written to subld.nosex .
Using up to 223 threads (change this with --threads).
Before main variant filters, 450 founders and 0 nonfounders present.
Calculating allele frequencies... done.
Total genotyping rate is exactly 1.
70 variants and 450 people pass filters and QC.
Note: No phenotypes present.
Running --r2 with the following filters:
  --ld-window: 50
  --ld-window-kb: 1000
  --ld-window-r2: 0
--r2 to subld.ld ... done.

End time: Wed May 27 11:32:38 2026