assembly_accession string | bioproject string | biosample string | wgs_master string | refseq_category string | taxid int64 | species_taxid int64 | organism_name string | infraspecific_name string | isolate string | version_status string | assembly_level string | release_type string | genome_rep string | seq_rel_date string | asm_name string | asm_submitter string | gbrs_paired_asm string | paired_asm_comp string | ftp_path string | excluded_from_refseq string | relation_to_type_material string | asm_not_live_date string | assembly_type string | group string | genome_size int64 | genome_size_ungapped int64 | gc_percent float64 | replicon_count int64 | scaffold_count int64 | contig_count int64 | annotation_provider string | annotation_name string | annotation_date string | total_gene_count string | protein_coding_gene_count string | non_coding_gene_count string | pubmed_id string |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
GCA_000001215.4 | PRJNA13812 | SAMN02803731 | na | reference genome | 7,227 | 7,227 | Drosophila melanogaster | na | na | latest | Chromosome | Major | Full | 2014-08-01 | Release 6 plus ISO1 MT | The FlyBase Consortium/Berkeley Drosophila Genome Project/Celera Genomics | GCF_000001215.4 | identical | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/001/215/GCA_000001215.4_Release_6_plus_ISO1_MT/ | na | na | na | haploid | invertebrate | 143,706,478 | 142,553,500 | 42 | 7 | 1,869 | 2,441 | FlyBase | FlyBase Release 6.54 | 2023-12-13 | 17872 | 13962 | 3543 | 10731132;12537568;12537572;12537573;12537574;16110336;17569856;17569867;25589440;26109356;26109357 |
GCA_000001405.29 | PRJNA31257 | na | na | reference genome | 9,606 | 9,606 | Homo sapiens | na | na | latest | Chromosome | Patch | Full | 2022-02-03 | GRCh38.p14 | Genome Reference Consortium | GCF_000001405.40 | different | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/001/405/GCA_000001405.29_GRCh38.p14/ | na | na | na | haploid-with-alt-loci | vertebrate_mammalian | 3,099,734,149 | 2,948,611,470 | 41 | 24 | 473 | 999 | Genome Reference Consortium | Annotation submitted by Genome Reference Consortium | 2017-11-21 | 37 | 13 | 24 | 7219534;10508508;10830953;11237011;11780052;12508121;12815422;12853948;14574404;15057823;15057824;15164053;15164054;15372022;15496913;15616553;15772651;15815621;16177791;16421571;16541075;16554811;16572171;16625196;16641997;16710414;18477386 |
GCA_000001515.5 | PRJNA13184 | SAMN02981217 | AACZ00000000.4 | na | 9,598 | 9,598 | Pan troglodytes | na | Yerkes chimp pedigree #C0471 (Clint) | latest | Chromosome | Major | Full | 2016-05-03 | Pan_tro 3.0 | Chimpanzee Sequencing and Analysis Consortium | GCF_000001515.7 | different | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/001/515/GCA_000001515.5_Pan_tro_3.0/ | superseded by newer assembly for species | na | na | haploid | vertebrate_mammalian | 3,231,154,112 | 3,132,603,083 | 41 | 25 | 45,510 | 72,225 | na | na | null | 0 | 0 | 0 | 16136131;16136134 |
GCA_000001545.3 | PRJNA20869 | SAMN02981238 | ABGA00000000.1 | na | 9,601 | 9,601 | Pongo abelii | na | ISIS 71 | latest | Chromosome | Major | Full | 2008-11-13 | P_pygmaeus_2.0.2 | Orangutan Genome Sequencing Consortium | na | na | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/001/545/GCA_000001545.3_P_pygmaeus_2.0.2/ | na | na | na | haploid-with-alt-loci | vertebrate_mammalian | 3,437,863,358 | 3,091,404,838 | 40.5 | 24 | 79,309 | 408,185 | na | na | null | 0 | 0 | 0 | 21270892 |
GCA_000001635.9 | PRJNA20689 | na | na | reference genome | 10,090 | 10,090 | Mus musculus | strain=C57BL/6J | na | latest | Chromosome | Major | Full | 2020-06-24 | GRCm39 | Genome Reference Consortium | GCF_000001635.27 | identical | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/001/635/GCA_000001635.9_GRCm39/ | na | na | na | haploid | vertebrate_mammalian | 2,728,206,152 | 2,654,605,538 | 42 | 21 | 101 | 305 | Genome Reference Consortium | Annotation submitted by Genome Reference Consortium | 2003-09-05 | 13 | 13 | 0 | 12954771;19468303;21750661 |
GCA_000001735.2 | PRJNA10719 | SAMN03081427 | na | reference genome | 3,702 | 3,702 | Arabidopsis thaliana | ecotype=Columbia | na | latest | Chromosome | Minor | Full | 2018-03-15 | TAIR10.1 | The Arabidopsis Information Resource (TAIR) | GCF_000001735.4 | identical | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/001/735/GCA_000001735.2_TAIR10.1/ | na | na | na | haploid | plant | 119,146,348 | 118,960,704 | 36 | 5 | 5 | 100 | The Arabidopsis Information Resource (TAIR) | Annotation submitted by The Arabidopsis Information Resource (TAIR) | 2025-06-24 | 38050 | 27549 | 5644 | 10574454;10617197;10617198;11130712;11130713;11130714;29519893 |
GCA_000001765.3 | PRJNA10626 | SAMN00779672 | AADE00000000.2 | na | 46,245 | 7,237 | Drosophila pseudoobscura pseudoobscura | strain=MV2-25 | na | latest | Chromosome | Major | Full | 2018-06-28 | Dpse_4.0 | FlyBase | na | na | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/001/765/GCA_000001765.3_Dpse_4.0/ | na | na | na | haploid | invertebrate | 164,662,283 | 164,661,883 | 45 | 7 | 251 | 259 | na | na | null | 0 | 0 | 0 | 15632085;17994087 |
GCA_000001895.4 | PRJNA10629 | SAMN02808228 | AABR00000000.7 | na | 10,116 | 10,116 | Rattus norvegicus | strain=mixed | na | latest | Chromosome | Major | Full | 2014-07-01 | Rnor_6.0 | Rat Genome Sequencing Consortium | GCF_000001895.5 | identical | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/001/895/GCA_000001895.4_Rnor_6.0/ | superseded by newer assembly for species | na | na | haploid | vertebrate_mammalian | 2,870,167,880 | 2,729,969,191 | 42 | 22 | 1,394 | 75,696 | Rat Genome Sequencing Consortium | Annotation submitted by Rat Genome Sequencing Consortium | 2014-07-02 | 13 | 13 | 0 | 15057822 |
GCA_000001905.1 | PRJNA12569 | SAMN02953622 | AAGU00000000.3 | na | 9,785 | 9,785 | Loxodonta africana | na | ISIS603380 | latest | Scaffold | Major | Full | 2009-07-15 | Loxafr3.0 | Broad Institute | GCF_000001905.1 | different | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/001/905/GCA_000001905.1_Loxafr3.0/ | superseded by newer assembly for species | na | na | haploid | vertebrate_mammalian | 3,196,738,035 | 3,118,542,542 | 41 | 1 | 2,352 | 95,866 | na | na | null | 0 | 0 | 0 | na |
GCA_000001985.1 | PRJNA19555 | SAMN02953685 | ABAR00000000.1 | na | 441,960 | 37,727 | Talaromyces marneffei ATCC 18224 | strain=ATCC 18224 | na | latest | Scaffold | Major | Full | 2008-10-29 | JCVI-PMFA1-2.0 | J. Craig Venter Institute | GCF_000001985.1 | identical | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/001/985/GCA_000001985.1_JCVI-PMFA1-2.0/ | superseded by newer assembly for species | assembly from type material | na | haploid | fungi | 28,643,865 | 28,467,480 | 46.5 | 0 | 452 | 589 | J. Craig Venter Institute | Annotation submitted by J. Craig Venter Institute | 2016-07-26 | 10138 | 10023 | 111 | 25676766 |
GCA_000002035.4 | PRJNA11776 | SAMN06930106 | na | reference genome | 7,955 | 7,955 | Danio rerio | strain=Tuebingen | na | latest | Chromosome | Major | Full | 2017-05-09 | GRCz11 | Genome Reference Consortium | GCF_000002035.6 | different | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/002/035/GCA_000002035.4_GRCz11/ | superseded by newer assembly for species | na | na | haploid-with-alt-loci | vertebrate_other | 1,373,454,788 | 1,368,765,506 | 36.5 | 25 | 1,917 | 19,725 | na | na | null | 0 | 0 | 0 | 23594743 |
GCA_000002075.2 | PRJNA13635 | SAMN02953658 | AASC00000000.3 | reference genome | 6,500 | 6,500 | Aplysia californica | na | F4 #8 | latest | Scaffold | Major | Full | 2013-05-15 | AplCal3.0 | Broad Institute | GCF_000002075.1 | different | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/002/075/GCA_000002075.2_AplCal3.0/ | na | na | na | haploid | invertebrate | 927,296,314 | 737,783,370 | 40.5 | 0 | 4,331 | 164,544 | na | na | null | 0 | 0 | 0 | na |
GCA_000002115.2 | PRJNA1431 | SAMN02981219 | AADD00000000.1 | na | 9,606 | 9,606 | Homo sapiens | na | na | latest | Chromosome | Major | Full | 2004-02-25 | WGSA | Celera Genomics | na | na | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/002/115/GCA_000002115.2_WGSA/ | genome length too small | na | na | haploid | vertebrate_mammalian | 2,863,645,671 | 2,695,614,880 | 41 | 24 | 4,940 | 211,493 | na | na | null | 0 | 0 | 0 | 14769938 |
GCA_000002125.2 | PRJNA19621 | SAMN02981236 | ABBA00000000.1 | na | 9,606 | 9,606 | Homo sapiens | na | na | latest | Chromosome | Major | Full | 2007-09-24 | HuRef | J. Craig Venter Institute | GCF_000002125.1 | identical | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/002/125/GCA_000002125.2_HuRef/ | superseded by newer assembly for species | na | na | haploid | vertebrate_mammalian | 2,844,000,504 | 2,809,571,127 | 41 | 24 | 4,530 | 71,333 | na | na | null | 0 | 0 | 0 | 17803354 |
GCA_000002135.3 | PRJNA10793 | na | na | na | 9,606 | 9,606 | Homo sapiens | na | na | latest | Chromosome | Major | Partial | 2004-09-01 | CRA_TCAGchr7v2 | The Centre for Applied Genomics | GCF_000002135.2 | identical | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/002/135/GCA_000002135.3_CRA_TCAGchr7v2/ | partial; superseded by newer assembly for species | na | na | haploid | vertebrate_mammalian | 158,329,839 | 155,296,360 | 41 | 1 | 6 | 122 | na | na | null | 0 | 0 | 0 | 12690205 |
GCA_000002165.1 | PRJNA11785 | SAMN03004379 | AAHY00000000.1 | na | 10,090 | 10,090 | Mus musculus | strain=mixed | na | latest | Chromosome | Major | Full | 2009-03-04 | Mm_Celera | Celera Genomics | na | na | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/002/165/GCA_000002165.1_Mm_Celera/ | contaminated | na | na | haploid | vertebrate_mammalian | 3,251,246,261 | 3,003,109,157 | 41.5 | 21 | 668,539 | 837,963 | Celera Genomics | Annotation submitted by Celera Genomics | 2018-05-11 | 31757 | 27595 | 0 | 12040188 |
GCA_000002175.2 | PRJNA16847 | SAMD00067074 | na | na | 37,012 | 9,598 | Pan troglodytes verus | na | na | latest | Chromosome | Major | Partial | 2006-04-20 | CCYSCv1 | The Chimpanzee Chromosome Y Sequencing Consortium | GCF_000002175.1 | identical | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/002/175/GCA_000002175.2_CCYSCv1/ | partial; superseded by newer assembly for species | na | na | haploid | vertebrate_mammalian | 12,263,273 | 11,163,273 | 39.5 | 1 | 2 | 2 | na | na | null | 0 | 0 | 0 | 16388311 |
GCA_000002195.1 | PRJNA10625 | SAMN00002455 | AADG00000000.6 | na | 7,460 | 7,460 | Apis mellifera | strain=DH4 | na | latest | Chromosome | Major | Full | 2011-01-14 | Amel_4.5 | Human Genome Sequencing Center | GCF_000002195.4 | different | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/002/195/GCA_000002195.1_Amel_4.5/ | superseded by newer assembly for species | na | na | haploid | invertebrate | 250,270,657 | 229,107,307 | 32.5 | 16 | 5,644 | 16,501 | na | na | null | 0 | 0 | 0 | na |
GCA_000002235.4 | PRJNA10736 | SAMN00829422 | AAGJ00000000.6 | reference genome | 7,668 | 7,668 | Strongylocentrotus purpuratus | na | Spur 01 | latest | Scaffold | Major | Full | 2019-09-06 | Spur_5.0 | Baylor College of Medicine | GCF_000002235.5 | different | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/002/235/GCA_000002235.4_Spur_5.0/ | na | na | na | haploid | invertebrate | 921,840,143 | 921,502,643 | 37.5 | 0 | 870 | 1,545 | na | na | null | 0 | 0 | 0 | 17095691 |
GCA_000002255.2 | PRJNA12537 | SAMN02981228 | AANU00000000.1 | na | 9,544 | 9,544 | Macaca mulatta | na | 17573 | latest | Chromosome | Major | Full | 2006-02-27 | Mmul_051212 | Macaca mulatta Genome Sequencing Consortium | GCF_000002255.3 | different | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/002/255/GCA_000002255.2_Mmul_051212/ | superseded by newer assembly for species | na | na | haploid | vertebrate_mammalian | 3,097,568,982 | 2,871,181,313 | 41 | 21 | 124,054 | 301,039 | na | na | null | 0 | 0 | 0 | na |
GCA_000002265.1 | PRJNA13999 | SAMN03000701 | AAHX00000000.1 | na | 10,116 | 10,116 | Rattus norvegicus | strain=BN; Sprague-Dawley | na | latest | Chromosome | Major | Full | 2006-12-06 | Rn_Celera | Celera Genomics | GCF_000002265.2 | different | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/002/265/GCA_000002265.1_Rn_Celera/ | superseded by newer assembly for species | na | na | haploid | vertebrate_mammalian | 2,931,643,592 | 2,807,682,847 | 42 | 21 | 392,288 | 503,452 | Celera Genomics | Annotation submitted by Celera Genomics | 2007-06-19 | 27309 | 27272 | 0 | na |
GCA_000002275.2 | PRJNA12885 | SAMN02953646 | AAPN00000000.1 | na | 9,258 | 9,258 | Ornithorhynchus anatinus | na | Glennie | latest | Chromosome | Major | Full | 2007-02-14 | ASM227v2 | Washington University (WashU) | na | na | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/002/275/GCA_000002275.2_ASM227v2/ | na | na | na | haploid | vertebrate_mammalian | 1,996,809,494 | 1,842,233,804 | 45.5 | 19 | 201,524 | 445,367 | na | na | null | 0 | 0 | 0 | 18464734 |
GCA_000002285.4 | PRJNA13179 | SAMN02953603 | AAEX00000000.4 | reference genome | 9,615 | 9,612 | Canis lupus familiaris | breed=boxer | Tasha | latest | Chromosome | Major | Full | 2020-10-06 | Dog10K_Boxer_Tasha | Dog Genome Sequencing Consortium | GCF_000002285.5 | different | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/002/285/GCA_000002285.4_Dog10K_Boxer_Tasha/ | na | na | na | haploid | vertebrate_mammalian | 2,312,785,471 | 2,312,726,632 | 41.5 | 39 | 146 | 1,161 | na | na | null | 0 | 0 | 0 | 16341006 |
GCA_000002295.1 | PRJNA12561 | SAMN02953611 | AAFR00000000.3 | na | 13,616 | 13,616 | Monodelphis domestica | na | na | latest | Chromosome | Major | Full | 2007-01-25 | MonDom5 | The Genome Sequencing Platform, The Genome Assembly Team | GCF_000002295.2 | different | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/002/295/GCA_000002295.1_MonDom5/ | superseded by newer assembly for species | na | na | haploid | vertebrate_mammalian | 3,600,487,649 | 3,501,643,220 | 38 | 9 | 5,137 | 72,811 | na | na | null | 0 | 0 | 0 | 17495919 |
GCA_000002305.1 | PRJNA18661 | SAMN02953672 | AAWR00000000.2 | na | 9,796 | 9,796 | Equus caballus | breed=thoroughbred | Twilight | latest | Chromosome | Major | Full | 2007-10-29 | EquCab2.0 | The Genome Assembly Team | GCF_000002305.2 | different | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/002/305/GCA_000002305.1_EquCab2.0/ | superseded by newer assembly for species | na | na | haploid | vertebrate_mammalian | 2,474,912,402 | 2,428,773,513 | 41.5 | 32 | 9,687 | 55,316 | na | na | null | 0 | 0 | 0 | 19892987 |
GCA_000002315.5 | PRJNA13342 | SAMN02981218 | AADN00000000.5 | na | 9,031 | 9,031 | Gallus gallus | breed=Red Jungle fowl, inbred line UCD001 | RJF #256 | latest | Chromosome | Major | Full | 2018-03-27 | GRCg6a | Genome Reference Consortium | GCF_000002315.6 | different | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/002/315/GCA_000002315.5_GRCg6a/ | superseded by newer assembly for species | na | na | haploid | vertebrate_other | 1,065,348,650 | 1,055,564,190 | 42 | 34 | 524 | 1,402 | na | na | null | 0 | 0 | 0 | 15592404;20622855;28135246 |
GCA_000002325.2 | PRJNA13660 | SAMN02902141 | AAZX00000000.1 | na | 7,425 | 7,425 | Nasonia vitripennis | strain=AsymCX | na | latest | Chromosome | Major | Full | 2012-11-28 | Nvit_2.1 | Baylor College of Medicine | GCF_000002325.3 | identical | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/002/325/GCA_000002325.2_Nvit_2.1/ | superseded by newer assembly for species | na | na | haploid | invertebrate | 295,780,872 | 238,616,307 | 41.5 | 5 | 6,169 | 25,484 | na | na | null | 0 | 0 | 0 | 20075255 |
GCA_000002335.3 | PRJNA12540 | SAMN02953634 | AAJJ00000000.2 | na | 7,070 | 7,070 | Tribolium castaneum | strain=Georgia GA2 | na | latest | Chromosome | Major | Full | 2016-03-10 | Tcas5.2 | Kansas State University | GCF_000002335.3 | different | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/002/335/GCA_000002335.3_Tcas5.2/ | superseded by newer assembly for species | na | na | haploid | invertebrate | 165,928,604 | 152,413,474 | 34 | 11 | 2,148 | 7,058 | Kansas State University | Annotation submitted by Kansas State University | 2016-03-10 | 16592 | 16590 | 0 | 18362917;19820115 |
GCA_000002415.2 | PRJNA150 | SAMN02953638 | AAKM00000000.1 | reference genome | 5,855 | 5,855 | Plasmodium vivax | na | Salvador I | latest | Chromosome | Minor | Full | 2009-05-06 | ASM241v2 | TIGR | GCF_000002415.2 | different | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/002/415/GCA_000002415.2_ASM241v2/ | na | na | na | haploid | protozoa | 27,007,701 | 26,959,301 | 42.5 | 14 | 2,747 | 2,763 | TIGR | Annotation submitted by TIGR | 2009-05-06 | 5507 | 5389 | 76 | 18843361 |
GCA_000002425.3 | PRJNA13064 | SAMN00120126 | ABEU00000000.3 | reference genome | 3,218 | 3,218 | Physcomitrium patens | ecotype=Gransden 2004 | na | latest | Chromosome | Major | Full | 2024-09-24 | Phypa V5 | Moss Genome Consortium | GCF_000002425.5 | different | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/002/425/GCA_000002425.3_Phypa_V5/ | na | na | na | haploid | plant | 471,971,527 | 467,421,614 | 33.5 | 27 | 357 | 2,149 | na | na | null | 0 | 0 | 0 | 18079367;29237241 |
GCA_000002435.2 | PRJNA1439 | SAMN02952905 | AACB00000000.3 | reference genome | 5,741 | 5,741 | Giardia duodenalis | strain=WB C6 | na | latest | Chromosome | Major | Full | 2019-11-06 | UU_WB_2.1 | Marine Biological Laboratory | GCF_000002435.2 | identical | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/002/435/GCA_000002435.2_UU_WB_2.1/ | na | na | na | haploid | protozoa | 12,078,186 | 11,673,475 | 49.5 | 5 | 35 | 38 | Marine Biological Laboratory | Annotation submitted by Marine Biological Laboratory | 2019-11-06 | 5388 | 4965 | 103 | 17901334 |
GCA_000002445.1 | PRJNA11756 | SAMN02953625 | na | reference genome | 185,431 | 5,691 | Trypanosoma brucei brucei TREU927 | strain=927/4 GUTat10.1 | na | latest | Chromosome | Major | Full | 2005-12-14 | ASM244v1 | Trypanosoma brucei consortium | GCF_000002445.2 | identical | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/002/445/GCA_000002445.1_ASM244v1/ | na | na | na | haploid | protozoa | 26,075,494 | 26,071,904 | 46.5 | 11 | 12 | 50 | Trypanosoma brucei consortium | Annotation submitted by Trypanosoma brucei consortium | 2016-07-26 | 10234 | 8758 | 557 | 12907729;16020724;16020726 |
GCA_000002455.1 | PRJNA27935 | na | na | na | 227,086 | 227,086 | Bigelowiella natans | na | na | latest | Chromosome | Major | Partial | 2005-09-16 | ASM245v1 | University of Melbourne, Australia | GCF_000002455.1 | different | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/002/455/GCA_000002455.1_ASM245v1/ | partial | na | na | haploid | protozoa | 372,870 | 372,870 | 28.5 | 3 | 3 | 3 | University of Melbourne, Australia | Annotation submitted by University of Melbourne, Australia | 2016-07-26 | 179 | 177 | 1 | 16760254 |
GCA_000002495.2 | PRJNA13840 | SAMN02953596 | AACU00000000.3 | reference genome | 242,507 | 318,829 | Pyricularia oryzae 70-15 | strain=70-15 | na | latest | Chromosome | Major | Full | 2011-10-14 | MG8 | International Rice Blast Genome Consortium | GCF_000002495.2 | identical | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/002/495/GCA_000002495.2_MG8/ | na | na | na | haploid | fungi | 40,979,121 | 40,949,321 | 51.5 | 7 | 53 | 216 | International Rice Blast Genome Consortium | Annotation submitted by International Rice Blast Genome Consortium | 2016-03-31 | 13184 | 12825 | 228 | 15846337 |
GCA_000002515.1 | PRJNA13835 | SAMEA3138170 | na | reference genome | 28,985 | 28,985 | Kluyveromyces lactis | strain=NRRL Y-1140 | na | latest | Complete Genome | Major | Full | 2004-07-02 | ASM251v1 | Genolevures Consortium | GCF_000002515.2 | different | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/002/515/GCA_000002515.1_ASM251v1/ | na | na | na | haploid | fungi | 10,689,156 | 10,689,156 | 39 | 6 | 6 | 6 | Genolevures Consortium | Annotation submitted by Genolevures Consortium | 2015-02-28 | 5389 | 5076 | 226 | 15229592 |
GCA_000002525.1 | PRJNA13837 | SAMEA3138171 | na | na | 284,591 | 4,952 | Yarrowia lipolytica CLIB122 | strain=CLIB122 | na | latest | Chromosome | Major | Full | 2004-07-02 | ASM252v1 | Genolevures Consortium | GCF_000002525.2 | different | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/002/525/GCA_000002525.1_ASM252v1/ | superseded by newer assembly for species | na | na | haploid | fungi | 20,502,981 | 20,501,837 | 49 | 6 | 6 | 18 | Genolevures Consortium | Annotation submitted by Genolevures Consortium | 2015-02-28 | 7334 | 6448 | 639 | 15229592 |
GCA_000002545.2 | PRJNA13831 | SAMEA3138172 | na | na | 5,478 | 5,478 | Nakaseomyces glabratus | strain=CBS 138 | na | latest | Chromosome | Major | Full | 2008-08-12 | ASM254v2 | Genolevures Consortium | GCF_000002545.3 | different | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/002/545/GCA_000002545.2_ASM254v2/ | superseded by newer assembly for species | assembly from type material | na | haploid | fungi | 12,318,245 | 12,317,945 | 38.5 | 13 | 13 | 16 | Genolevures Consortium | Annotation submitted by Genolevures Consortium | 2015-03-01 | 5464 | 5202 | 220 | 15229592 |
GCA_000002595.3 | PRJNA12260 | SAMN02953692 | ABCN00000000.2 | reference genome | 3,055 | 3,055 | Chlamydomonas reinhardtii | strain=CC-503 cw92 mt+ | na | latest | Chromosome | Major | Full | 2018-01-26 | Chlamydomonas_reinhardtii_v5.5 | DOE Joint Genome Institute | GCF_000002595.2 | identical | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/002/595/GCA_000002595.3_Chlamydomonas_reinhardtii_v5.5/ | na | na | na | haploid | plant | 111,098,438 | 107,048,224 | 64 | 17 | 53 | 1,512 | DOE Joint Genome Institute | Annotation submitted by DOE Joint Genome Institute | 2018-01-26 | 17743 | 17743 | 0 | 17932292 |
GCA_000002655.1 | PRJNA131 | SAMN00115746 | AAHF00000000.1 | reference genome | 330,879 | 746,128 | Aspergillus fumigatus Af293 | strain=Af293 | na | latest | Chromosome | Major | Full | 2005-06-10 | ASM265v1 | J. Craig Venter Institute | GCF_000002655.1 | identical | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/002/655/GCA_000002655.1_ASM265v1/ | na | na | na | haploid | fungi | 29,384,958 | 28,809,958 | 50 | 8 | 8 | 19 | J. Craig Venter Institute | Annotation submitted by J. Craig Venter Institute | 2005-06-10 | 9916 | 9630 | 229 | 16372009 |
GCA_000002715.1 | PRJNA15664 | SAMN02953636 | AAKD00000000.3 | reference genome | 344,612 | 5,057 | Aspergillus clavatus NRRL 1 | strain=NRRL 1 | na | latest | Scaffold | Major | Full | 2006-12-14 | ASM271v1 | J. Craig Venter Institute | GCF_000002715.2 | identical | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/002/715/GCA_000002715.1_ASM271v1/ | na | assembly from type material | na | haploid | fungi | 27,859,441 | 27,850,641 | 49 | 0 | 143 | 231 | J. Craig Venter Institute | Annotation submitted by J. Craig Venter Institute | 2016-07-14 | 9379 | 9121 | 235 | 18404212 |
GCA_000002725.2 | PRJNA10724 | SAMEA3138173 | na | reference genome | 347,515 | 5,664 | Leishmania major strain Friedlin | strain=Friedlin | na | latest | Complete Genome | Major | Full | 2011-02-14 | ASM272v2 | Friedlin Consortium | GCF_000002725.2 | identical | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/002/725/GCA_000002725.2_ASM272v2/ | na | na | na | haploid | protozoa | 32,855,089 | 32,855,089 | 59.5 | 36 | 36 | 36 | Friedlin Consortium | Annotation submitted by Friedlin Consortium | 2015-03-01 | 9687 | 8316 | 1275 | 16020728;22038252 |
GCA_000002765.3 | PRJNA13173 | SAMN00102897 | na | reference genome | 36,329 | 5,833 | Plasmodium falciparum 3D7 | na | 3D7 | latest | Complete Genome | Major | Full | 2019-10-22 | GCA_000002765 | Plasmodium falciparum Genome Sequencing Consortium | GCF_000002765.6 | different | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/002/765/GCA_000002765.3_GCA_000002765/ | na | na | na | haploid | protozoa | 23,292,622 | 23,292,622 | 19.5 | 14 | 14 | 14 | Plasmodium falciparum Genome Sequencing Consortium | Annotation submitted by Plasmodium falciparum Genome Sequencing Consortium | 2019-10-22 | 5797 | 5387 | 252 | 9804551;10448855;12368864;12368867 |
GCA_000002775.4 | PRJNA10772 | SAMN02953657 | AARH00000000.4 | reference genome | 3,694 | 3,694 | Populus trichocarpa | na | Nisqually-1 | latest | Chromosome | Major | Full | 2022-10-20 | P.trichocarpa_v4.1 | US DOE Joint Genome Institute (JGI | GCF_000002775.5 | different | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/002/775/GCA_000002775.4_P.trichocarpa_v4.1/ | na | na | na | haploid | plant | 392,162,179 | 391,572,179 | 34 | 19 | 105 | 105 | US DOE Joint Genome Institute (JGI | Annotation submitted by US DOE Joint Genome Institute (JGI | 2022-10-20 | 34699 | 34699 | 0 | 16973872 |
GCA_000002825.3 | PRJNA16084 | SAMN02953626 | AAHC00000000.3 | na | 412,133 | 5,722 | Trichomonas vaginalis G3 | strain=G3 | na | latest | Scaffold | Major | Full | 2022-12-02 | ASM282v3 | TIGR | na | na | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/002/825/GCA_000002825.3_ASM282v3/ | na | na | na | haploid | protozoa | 176,420,065 | 175,601,672 | 33 | 0 | 64,769 | 72,950 | TIGR | Annotation submitted by TIGR | 2022-12-15 | 60817 | 59681 | 1136 | 17218520 |
GCA_000002835.1 | PRJNA364 | SAMEA3138174 | na | na | 5,802 | 5,802 | Eimeria tenella | strain=Houghton | na | latest | Chromosome | Major | Partial | 2006-06-16 | ASM283v1 | Sanger Institute | GCF_000002835.1 | different | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/002/835/GCA_000002835.1_ASM283v1/ | partial; superseded by newer assembly for species | na | na | haploid | protozoa | 1,347,714 | 889,314 | 49.5 | 1 | 1 | 49 | Sanger Institute | Annotation submitted by Sanger Institute | 2015-02-28 | 216 | 216 | 0 | 17284678 |
GCA_000002845.2 | PRJEA18663 | SAMEA2272271 | CADA00000000.1 | reference genome | 420,245 | 5,660 | Leishmania braziliensis MHOM/BR/75/M2904 | strain=MHOM/BR/75/M2904 | na | latest | Chromosome | Major | Full | 2011-11-07 | ASM284v2 | The Sanger Institute | GCF_000002845.2 | identical | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/002/845/GCA_000002845.2_ASM284v2/ | na | na | na | haploid | protozoa | 32,068,771 | 31,987,066 | 58 | 35 | 138 | 955 | The Sanger Institute | Annotation submitted by The Sanger Institute | 2015-04-21 | 8468 | 8160 | 103 | 17572675;22038252 |
GCA_000002855.2 | PRJNA19275 | SAMEA3283178 | na | reference genome | 5,061 | 5,061 | Aspergillus niger | na | na | latest | Scaffold | Major | Full | 2007-04-11 | ASM285v2 | DSM, The Netherlands | GCF_000002855.4 | identical | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/002/855/GCA_000002855.2_ASM285v2/ | na | na | na | haploid | fungi | 33,975,768 | 33,930,600 | 50.5 | 8 | 19 | 469 | DSM, The Netherlands | Annotation submitted by DSM, The Netherlands | 2015-03-18 | 14532 | 14086 | 329 | na |
GCA_000002865.1 | PRJNA19045 | SAMN02953695 | ABFJ00000000.1 | reference genome | 431,895 | 81,824 | Monosiga brevicollis MX1 | strain=MX1 | na | latest | Scaffold | Major | Full | 2007-12-20 | V1.0 | DOE Joint Genome Institute | GCF_000002865.3 | different | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/002/865/GCA_000002865.1_V1.0/ | na | na | na | haploid | protozoa | 41,633,360 | 38,648,938 | 55 | 0 | 218 | 2,143 | DOE Joint Genome Institute | Annotation submitted by DOE Joint Genome Institute | 2016-07-26 | 9175 | 9172 | 0 | 18273011 |
GCA_000002875.2 | PRJNA12658 | SAMEA3138175 | CACT00000000.1 | reference genome | 435,258 | 5,671 | Leishmania infantum JPCM5 | strain=JPCM5 | na | latest | Chromosome | Major | Full | 2011-11-08 | ASM287v2 | The Sanger Institute | GCF_000002875.2 | identical | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/002/875/GCA_000002875.2_ASM287v2/ | na | na | na | haploid | protozoa | 32,122,061 | 32,102,100 | 59.5 | 36 | 76 | 278 | The Sanger Institute | Annotation submitted by The Sanger Institute | 2012-05-19 | 8383 | 8150 | 142 | 17572675;22038252 |
GCA_000002945.3 | PRJNA13836 | SAMEA3138176 | na | reference genome | 4,896 | 4,896 | Schizosaccharomyces pombe | strain=972h- | na | latest | Chromosome | Major | Full | 2007-11-09 | ASM294v3 | S. pombe European Sequencing Consortium (EUPOM) | GCF_000002945.2 | different | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/002/945/GCA_000002945.3_ASM294v3/ | na | na | na | haploid | fungi | 12,571,820 | 12,571,420 | 36 | 3 | 3 | 7 | S. pombe European Sequencing Consortium (EUPOM) | Annotation submitted by S. pombe European Sequencing Consortium (EUPOM) | 2024-11-14 | 12640 | 5115 | 7493 | 2446871;2780299;4046021;6092057;11859360;15811919 |
GCA_000002975.1 | PRJNA27847 | SAMEA3865277 | na | na | 55,529 | 55,529 | Guillardia theta | na | na | latest | Chromosome | Major | Partial | 2001-04-26 | ASM297v1 | Institute for Marine Biosciences, Halifax, Canada | GCF_000002975.1 | different | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/002/975/GCA_000002975.1_ASM297v1/ | partial | na | na | haploid | protozoa | 551,264 | 551,264 | 26.5 | 3 | 3 | 3 | Institute for Marine Biosciences, Halifax, Canada | Annotation submitted by Institute for Marine Biosciences, Halifax, Canada | 2016-07-20 | 387 | 369 | 17 | 10618395;11323671 |
GCA_000002985.3 | PRJNA13758 | na | na | reference genome | 6,239 | 6,239 | Caenorhabditis elegans | strain=Bristol N2 | na | latest | Complete Genome | Major | Full | 2013-02-07 | WBcel235 | C. elegans Sequencing Consortium | GCF_000002985.6 | different | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/002/985/GCA_000002985.3_WBcel235/ | na | na | na | haploid | invertebrate | 100,272,607 | 100,272,607 | 35.5 | 6 | 6 | 6 | C. elegans Sequencing Consortium | Annotation submitted by C. elegans Sequencing Consortium | 2025-10-30 | 46890 | 19971 | 24787 | 9851916 |
GCA_000002995.5 | PRJNA10729 | SAMEA3146321 | CAAKNF000000000.1 | reference genome | 6,279 | 6,279 | Brugia malayi | strain=FR3 | na | latest | Scaffold | Major | Full | 2019-06-02 | B_malayi-4.0 | WormBase group, EBI | GCF_000002995.4 | identical | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/002/995/GCA_000002995.5_B_malayi-4.0/ | na | na | na | haploid | invertebrate | 87,155,713 | 86,878,348 | 28.5 | 0 | 196 | 204 | WormBase group, EBI | Annotation submitted by WormBase group, EBI | 2019-06-02 | 11718 | 10934 | 360 | na |
GCA_000003025.7 | PRJNA1282681 | SAMN02953785 | AEMK00000000.3 | reference genome | 9,823 | 9,823 | Sus scrofa | breed=Duroc | TJ Tabasco | latest | Complete Genome | Major | Full | 2025-12-01 | T2T-Sscrofa | Northwest A&F University | na | na | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/003/025/GCA_000003025.7_T2T-Sscrofa/ | na | na | na | haploid | vertebrate_mammalian | 2,688,404,542 | 2,688,404,542 | 42.5 | 20 | 20 | 20 | na | na | null | 0 | 0 | 0 | 32543654 |
GCA_000003055.5 | PRJNA32899 | SAMN02898106 | DAAA00000000.2 | na | 9,913 | 9,913 | Bos taurus | breed=Hereford | na | latest | Chromosome | Minor | Full | 2014-11-25 | Bos_taurus_UMD_3.1.1 | Center for Bioinformatics and Computational Biology, University of Maryland | GCF_000003055.6 | different | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/003/055/GCA_000003055.5_Bos_taurus_UMD_3.1.1/ | superseded by newer assembly for species | na | na | haploid | vertebrate_mammalian | 2,670,123,310 | 2,649,385,423 | 42 | 30 | 6,336 | 75,617 | Center for Bioinformatics and Computational Biology, University of Maryland | Annotation submitted by Center for Bioinformatics and Computational Biology, University of Maryland | 2010-05-21 | 26410 | 20562 | 650 | 19393038;25426337 |
GCA_000003085.2 | PRJNA1436 | SAMN02952904 | AABL00000000.1 | na | 73,239 | 5,861 | Plasmodium yoelii yoelii | na | 17XNL | latest | Contig | Major | Full | 2002-10-03 | ASM308v2 | TIGR | GCF_000003085.2 | identical | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/003/085/GCA_000003085.2_ASM308v2/ | superseded by newer assembly for species | na | na | haploid | protozoa | 23,125,449 | 23,125,449 | 24.5 | 0 | 5,687 | 5,687 | TIGR | Annotation submitted by TIGR | 2002-10-03 | 3040 | 2990 | 50 | 12368865 |
GCA_000003115.1 | PRJNA32759 | SAMN03000705 | ACBE00000000.1 | na | 9,685 | 9,685 | Felis catus | breed=mixed | na | latest | Chromosome | Major | Full | 2009-03-16 | catChrV17e | NHGRI/Genome Technology Branch | na | na | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/003/115/GCA_000003115.1_catChrV17e/ | na | na | na | haploid | vertebrate_mammalian | 3,160,286,939 | 1,990,619,120 | 42.5 | 19 | 104,434 | 604,920 | na | na | null | 0 | 0 | 0 | na |
GCA_000003125.1 | PRJNA19557 | SAMN02953686 | ABAS00000000.1 | reference genome | 441,959 | 28,564 | Talaromyces stipitatus ATCC 10500 | strain=ATCC 10500 | na | latest | Scaffold | Major | Full | 2008-12-22 | JCVI-TSTA1-3.0 | J. Craig Venter Institute | GCF_000003125.1 | identical | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/003/125/GCA_000003125.1_JCVI-TSTA1-3.0/ | na | assembly from type material | na | haploid | fungi | 35,685,443 | 35,558,430 | 46 | 0 | 820 | 960 | J. Craig Venter Institute | Annotation submitted by J. Craig Venter Institute | 2016-07-24 | 12574 | 12457 | 104 | 25676766 |
GCA_000003135.1 | PRJNA31437 | SAMN00001475 | ACHI00000000.1 | na | 548,480 | 216,816 | Bifidobacterium longum subsp. longum ATCC 55813 | strain=ATCC 55813 | na | latest | Scaffold | Major | Full | 2009-05-05 | ASM313v1 | Baylor College of Medicine | GCF_000003135.1 | identical | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/003/135/GCA_000003135.1_ASM313v1/ | na | na | na | haploid | bacteria | 2,396,359 | 2,372,858 | 60.5 | 1 | 114 | 140 | Baylor College of Medicine | Annotation submitted by Baylor College of Medicine | 2013-09-17 | 2171 | 2109 | 62 | na |
GCA_000003195.3 | PRJNA13876 | SAMN02953738 | ABXC00000000.3 | reference genome | 4,558 | 4,558 | Sorghum bicolor | cultivar=BTx623 | na | latest | Chromosome | Major | Full | 2017-04-07 | Sorghum_bicolor_NCBIv3 | Sorghum Consortium | GCF_000003195.3 | different | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/003/195/GCA_000003195.3_Sorghum_bicolor_NCBIv3/ | na | na | na | haploid | plant | 708,735,318 | 675,363,888 | 44 | 10 | 867 | 4,773 | Sorghum Consortium | Annotation submitted by Sorghum Consortium | 2017-04-07 | 34118 | 34118 | 0 | 19189423 |
GCA_000003205.6 | PRJNA12555 | SAMN02898106 | AAFC00000000.5 | na | 9,913 | 9,913 | Bos taurus | breed=Hereford | na | latest | Chromosome | Major | Full | 2015-11-19 | Btau_5.0.1 | Cattle Genome Sequencing International Consortium | GCF_000003205.7 | identical | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/003/205/GCA_000003205.6_Btau_5.0.1/ | superseded by newer assembly for species | na | na | haploid | vertebrate_mammalian | 2,724,980,740 | 2,713,032,866 | 42 | 31 | 5,998 | 42,267 | na | na | null | 0 | 0 | 0 | 19390049 |
GCA_000003215.1 | PRJNA20093 | SAMN02470531 | ABFD00000000.2 | na | 455,631 | 1,496 | Clostridioides difficile QCD-66c26 | na | QCD-66c26 | latest | Chromosome | Major | Full | 2009-01-30 | ASM321v1 | McGill University | GCF_000003215.1 | identical | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/003/215/GCA_000003215.1_ASM321v1/ | na | na | na | haploid | bacteria | 4,127,750 | 4,126,050 | 28.5 | 1 | 15 | 31 | na | na | null | 0 | 0 | 0 | na |
GCA_000003225.1 | PRJNA153 | SAMEA3138180 | na | reference genome | 5,874 | 5,874 | Theileria annulata | strain=Ankara isolate clone C9 | na | latest | Chromosome | Major | Full | 2005-07-29 | ASM322v1 | The Sanger Institute | GCF_000003225.4 | identical | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/003/225/GCA_000003225.1_ASM322v1/ | na | na | na | haploid | protozoa | 8,352,220 | 8,352,020 | 32.5 | 4 | 7 | 9 | The Sanger Institute | Annotation submitted by The Sanger Institute | 2017-01-26 | 3796 | 3795 | 0 | 15994557 |
GCA_000003515.2 | PRJNA15634 | SAMN02953631 | AAIW00000000.1 | reference genome | 336,963 | 33,188 | Uncinocarpus reesii 1704 | strain=1704 | na | latest | Scaffold | Major | Full | 2009-05-21 | ASM351v2 | Broad Institute | GCF_000003515.1 | identical | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/003/515/GCA_000003515.2_ASM351v2/ | na | na | na | haploid | fungi | 22,327,935 | 22,146,268 | 48.5 | 0 | 44 | 582 | Broad Institute | Annotation submitted by Broad Institute | 2015-03-23 | 7856 | 7760 | 96 | na |
GCA_000003525.2 | PRJNA29171 | SAMN02953741 | ACBT00000000.1 | reference genome | 559,297 | 5,039 | Blastomyces dermatitidis ER-3 | strain=ER-3 | na | latest | Scaffold | Major | Full | 2009-02-24 | BD_ER3_V1 | Broad Institute | GCF_000003525.1 | identical | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/003/525/GCA_000003525.2_BD_ER3_V1/ | na | na | na | haploid | fungi | 66,568,269 | 66,230,255 | 37 | 0 | 25 | 591 | Broad Institute | Annotation submitted by Broad Institute | 2016-06-02 | 10081 | 9755 | 132 | na |
GCA_000003605.2 | PRJNA12887 | SAMN00102747 | ACQM00000000.1 | reference genome | 10,224 | 10,224 | Saccoglossus kowalevskii | na | na | latest | Scaffold | Minor | Full | 2009-09-09 | Skow_1.2 | Baylor College of Medicine | GCF_000003605.3 | different | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/003/605/GCA_000003605.2_Skow_1.2/ | na | na | na | haploid | invertebrate | 775,049,609 | 642,076,022 | 36 | 0 | 53,954 | 135,537 | na | na | null | 0 | 0 | 0 | na |
GCA_000003625.1 | PRJNA12819 | SAMN02953624 | AAGW00000000.2 | na | 9,986 | 9,986 | Oryctolagus cuniculus | breed=Thorbecke inbred | na | latest | Chromosome | Major | Full | 2009-10-20 | OryCun2.0 | The Broad Institute of MIT and Harvard | GCF_000003625.3 | different | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/003/625/GCA_000003625.1_OryCun2.0/ | superseded by newer assembly for species | na | na | haploid | vertebrate_mammalian | 2,737,473,256 | 2,604,006,039 | 43.5 | 23 | 3,318 | 84,024 | na | na | null | 0 | 0 | 0 | na |
GCA_000003645.1 | PRJNA29657 | SAMN00717290 | ACLS00000000.1 | na | 526,973 | 1,396 | Bacillus cereus m1293 | strain=m1293 | na | latest | Chromosome | Major | Full | 2009-05-29 | ASM364v1 | Naval Medical Research Center | GCF_000003645.1 | identical | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/003/645/GCA_000003645.1_ASM364v1/ | unverified source organism | na | na | haploid | bacteria | 5,269,725 | 5,245,625 | 35.5 | 1 | 1 | 241 | Naval Medical Research Center | Annotation submitted by Naval Medical Research Center | 2009-05-29 | 5356 | 5282 | 74 | 22645259 |
GCA_000003745.2 | PRJEA18785 | SAMEA2272750 | CAAP00000000.3 | na | 29,760 | 29,760 | Vitis vinifera | cultivar=PN40024 | na | latest | Chromosome | Major | Full | 2009-12-07 | 12X | International Grape Genome Program | GCF_000003745.3 | different | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/003/745/GCA_000003745.2_12X/ | superseded by newer assembly for species | na | na | haploid | plant | 485,326,422 | 470,268,414 | 34.5 | 19 | 2,065 | 14,655 | International Grape Genome Program | Annotation submitted by International Grape Genome Program | 2016-07-24 | 26346 | 26346 | 0 | 17721507 |
GCA_000003815.2 | PRJNA20249 | SAMN02953694 | ABEP00000000.3 | reference genome | 7,739 | 7,739 | Branchiostoma floridae | strain=S238N-H82 | na | latest | Chromosome | Major | Full | 2020-04-29 | Bfl_VNyyK | DOE Joint Genome Institute | GCF_000003815.2 | different | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/003/815/GCA_000003815.2_Bfl_VNyyK/ | na | na | na | haploid | invertebrate | 513,445,848 | 487,113,852 | 41.5 | 19 | 431 | 22,995 | na | na | null | 0 | 0 | 0 | 18563158;32313176 |
GCA_000003835.1 | PRJNA12753 | SAMN02953613 | AAFT00000000.1 | na | 306,902 | 36,911 | Clavispora lusitaniae ATCC 42720 | strain=ATCC 42720 | na | latest | Scaffold | Major | Full | 2009-06-02 | ASM383v1 | Broad Institute | GCF_000003835.1 | identical | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/003/835/GCA_000003835.1_ASM383v1/ | superseded by newer assembly for species | na | na | haploid | fungi | 12,114,892 | 12,079,919 | 44.5 | 0 | 9 | 88 | Broad Institute | Annotation submitted by Broad Institute | 2023-12-01 | 6153 | 5936 | 212 | 19465905 |
GCA_000003855.2 | PRJNA29173 | SAMN02953742 | ACBU00000000.1 | reference genome | 559,298 | 1,681,229 | Blastomyces gilchristii SLH14081 | strain=SLH14081 | na | latest | Scaffold | Major | Full | 2009-02-24 | BD_SLH14081_V1 | Broad Institute | GCF_000003855.2 | identical | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/003/855/GCA_000003855.2_BD_SLH14081_V1/ | na | na | na | haploid | fungi | 75,353,942 | 74,342,981 | 36 | 0 | 100 | 1,791 | Broad Institute | Annotation submitted by Broad Institute | 2016-06-02 | 10148 | 9692 | 150 | na |
GCA_000003925.1 | PRJNA29701 | SAMN00727646 | ACMU00000000.1 | na | 526,997 | 1,405 | Bacillus mycoides DSM 2048 | strain=DSM 2048 | na | latest | Chromosome | Major | Full | 2009-05-29 | ASM392v1 | Naval Medical Research Center | GCF_000003925.1 | identical | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/003/925/GCA_000003925.1_ASM392v1/ | na | assembly from type material | na | haploid | bacteria | 5,561,906 | 5,541,906 | 35 | 1 | 1 | 200 | Naval Medical Research Center | Annotation submitted by Naval Medical Research Center | 2015-03-12 | 5747 | 5658 | 89 | 22645259 |
GCA_000003955.1 | PRJNA29699 | SAMN00727677 | ACMT00000000.1 | na | 526,994 | 1,396 | Bacillus cereus AH1273 | strain=AH1273 | na | latest | Chromosome | Major | Full | 2009-05-29 | ASM395v1 | Naval Medical Research Center | GCF_000003955.1 | identical | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/003/955/GCA_000003955.1_ASM395v1/ | unverified source organism | na | na | haploid | bacteria | 5,790,501 | 5,749,301 | 35 | 1 | 1 | 412 | Naval Medical Research Center | Annotation submitted by Naval Medical Research Center | 2015-03-12 | 5897 | 5798 | 99 | 22645259 |
GCA_000004015.3 | PRJNA12434 | SAMN02953616 | AAGE00000000.2 | na | 7,159 | 7,159 | Aedes aegypti | strain=Liverpool | na | latest | Scaffold | Minor | Full | 2014-04-30 | AaegL3 | VectorBase | GCF_000004015.4 | identical | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/004/015/GCA_000004015.3_AaegL3/ | superseded by newer assembly for species | na | na | haploid | invertebrate | 1,383,957,531 | 1,310,076,332 | 38.5 | 3 | 4,756 | 36,204 | VectorBase | Annotation submitted by VectorBase | 2016-07-26 | 17350 | 15987 | 1358 | 17510324 |
GCA_000004035.2 | PRJNA12587 | SAMN03004383 | ABQO000000000.2 | na | 9,315 | 9,315 | Notamacropus eugenii | na | na | latest | Contig | Major | Full | 2012-02-18 | Meug_2.0 | Tammar Wallaby Genome Sequencing Consortium | na | na | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/004/035/GCA_000004035.2_Meug_2.0/ | na | na | na | haploid | vertebrate_mammalian | 2,594,098,366 | 2,594,098,366 | 39 | 0 | 1,110,978 | 1,110,978 | na | na | null | 0 | 0 | 0 | 21854559 |
GCA_000004075.3 | PRJNA33619 | SAMN02953750 | ACHR00000000.3 | reference genome | 3,659 | 3,659 | Cucumis sativus | cultivar=9930 | na | latest | Chromosome | Major | Full | 2019-11-15 | Cucumber_9930_V3 | The Cucumber Genome Initiative | GCF_000004075.3 | different | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/004/075/GCA_000004075.3_Cucumber_9930_V3/ | na | na | na | haploid | plant | 224,801,081 | 224,764,911 | 32.5 | 7 | 84 | 173 | The Cucumber Genome Initiative | Annotation submitted by The Cucumber Genome Initiative | 2019-11-15 | 24012 | 24012 | 0 | 19495411;19881527;20565788;22047402;31216035 |
GCA_000004095.1 | PRJNA12876 | SAMN00000081 | ACZU00000000.1 | na | 6,087 | 6,087 | Hydra vulgaris | strain=105 | na | latest | Scaffold | Major | Full | 2009-10-30 | Hydra_RP_1.0 | JCVI | GCF_000004095.1 | different | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/004/095/GCA_000004095.1_Hydra_RP_1.0/ | superseded by newer assembly for species | na | na | haploid | invertebrate | 852,155,112 | 785,475,063 | 27.5 | 0 | 20,914 | 126,667 | na | na | null | 0 | 0 | 0 | 20228792 |
GCA_000004125.1 | PRJNA41283 | na | na | na | 7,244 | 7,244 | Drosophila virilis | strain=15010-1051.88 | na | latest | Chromosome | Major | Partial | 2009-11-06 | ASM412v1 | Washington University, Department of Biology | na | na | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/004/125/GCA_000004125.1_ASM412v1/ | partial | na | na | haploid | invertebrate | 1,255,352 | 1,240,624 | 37.5 | 1 | 1 | 9 | Washington University, Department of Biology | Annotation submitted by Washington University, Department of Biology | 2009-11-06 | 81 | 81 | 0 | 20479145 |
GCA_000004155.2 | PRJNA38373 | SAMN02953762 | ACQJ00000000.2 | reference genome | 653,667 | 866,546 | Schizosaccharomyces cryophilus OY26 | strain=OY26 | na | latest | Scaffold | Major | Full | 2013-07-31 | SCY4 | Broad Institute | GCF_000004155.1 | identical | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/004/155/GCA_000004155.2_SCY4/ | na | assembly from type material | na | haploid | fungi | 11,554,764 | 11,523,874 | 37.5 | 0 | 30 | 198 | Broad Institute | Annotation submitted by Broad Institute | 2015-03-22 | 5494 | 5155 | 338 | 21511999 |
GCA_000004195.4 | PRJNA577946 | SAMN13041969 | AAMC00000000.4 | reference genome | 8,364 | 8,364 | Xenopus tropicalis | strain=Nigerian | na | latest | Chromosome | Major | Full | 2019-11-14 | UCB_Xtro_10.0 | University of California, Berkeley | GCF_000004195.4 | different | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/004/195/GCA_000004195.4_UCB_Xtro_10.0/ | na | na | na | haploid | vertebrate_other | 1,451,283,599 | 1,448,444,368 | 40.5 | 10 | 166 | 850 | University of California, Berkeley | Annotation submitted by University of California, Berkeley | 2019-11-14 | 25015 | 25015 | 0 | 20431018 |
GCA_000004255.1 | PRJNA41137 | SAMN02981250 | ADBK00000000.1 | reference genome | 81,972 | 59,689 | Arabidopsis lyrata subsp. lyrata | na | na | latest | Scaffold | Major | Full | 2010-06-02 | v.1.0 | US DOE Joint Genome Institute (JGI-PGF) | GCF_000004255.2 | different | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/004/255/GCA_000004255.1_v.1.0/ | genome length too small | na | na | haploid | plant | 206,667,935 | 183,707,801 | 36 | 0 | 695 | 3,645 | US DOE Joint Genome Institute (JGI-PGF) | Annotation submitted by US DOE Joint Genome Institute (JGI-PGF) | 2016-07-25 | 32534 | 32533 | 0 | na |
GCA_000004335.1 | PRJNA38683 | SAMN00008160 | ACTA00000000.1 | na | 9,646 | 9,646 | Ailuropoda melanoleuca | na | na | latest | Scaffold | Major | Full | 2009-12-15 | AilMel_1.0 | Beijing Genomics Institute, Shenzhen | GCF_000004335.2 | different | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/004/335/GCA_000004335.1_AilMel_1.0/ | superseded by newer assembly for species | na | na | haploid | vertebrate_mammalian | 2,299,492,210 | 2,245,296,026 | 41.5 | 0 | 81,466 | 200,592 | Beijing Genomics Institute, Shenzhen | Annotation submitted by Beijing Genomics Institute, Shenzhen | 2016-07-24 | 22586 | 17538 | 1448 | 20010809 |
GCA_000004515.5 | PRJNA19861 | SAMN00002965 | ACUP00000000.4 | reference genome | 3,847 | 3,847 | Glycine max | cultivar=Williams 82 | na | latest | Chromosome | Major | Full | 2021-03-10 | Glycine_max_v4.0 | US DOE Joint Genome Institute (JGI-PGF) | GCF_000004515.6 | different | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/004/515/GCA_000004515.5_Glycine_max_v4.0/ | na | na | na | haploid | plant | 978,386,919 | 952,478,023 | 34.5 | 20 | 345 | 9,197 | US DOE Joint Genome Institute (JGI-PGF) | Annotation submitted by US DOE Joint Genome Institute (JGI-PGF) | 2021-03-10 | 52872 | 52872 | 0 | 20075913 |
GCA_000004555.3 | PRJNA10731 | SAMEA3138181 | CAAC00000000.3 | reference genome | 6,238 | 6,238 | Caenorhabditis briggsae | strain=AF16 | na | latest | Chromosome | Major | Full | 2014-07-02 | CB4 | The C.briggsae Sequencing Consortium | GCF_000004555.2 | identical | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/004/555/GCA_000004555.3_CB4/ | na | na | na | haploid | invertebrate | 108,384,165 | 105,418,679 | 37.5 | 6 | 638 | 5,074 | The C.briggsae Sequencing Consortium | Annotation submitted by The C.briggsae Sequencing Consortium | 2014-07-02 | 22739 | 21934 | 805 | 14624247 |
GCA_000004655.2 | PRJNA361 | SAMN02953581 | AAAA00000000.2 | na | 39,946 | 4,530 | Oryza sativa Indica Group | cultivar=93-11 | na | latest | Chromosome | Major | Full | 2011-02-25 | ASM465v1 | Beijing Institute of Genomics, Chinese Academy of Sciences | na | na | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/004/655/GCA_000004655.2_ASM465v1/ | na | na | na | haploid | plant | 426,337,286 | 410,675,147 | 43.5 | 12 | 10,627 | 50,234 | Beijing Institute of Genomics, Chinese Academy of Sciences | Annotation submitted by Beijing Institute of Genomics, Chinese Academy of Sciences | 2015-03-23 | 39285 | 37358 | 1927 | 15685292 |
GCA_000004665.1 | PRJNA20401 | SAMN02981242 | ACFV00000000.1 | na | 9,483 | 9,483 | Callithrix jacchus | na | na | latest | Chromosome | Major | Full | 2010-01-22 | Callithrix jacchus-3.2 | Washington University (WashU) | GCF_000004665.1 | identical | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/004/665/GCA_000004665.1_Callithrix_jacchus-3.2/ | superseded by newer assembly for species | na | na | haploid | vertebrate_mammalian | 2,914,958,544 | 2,752,505,800 | 41 | 24 | 16,399 | 201,371 | na | na | null | 0 | 0 | 0 | na |
GCA_000004695.1 | PRJNA201 | SAMN02953606 | AAFI00000000.2 | reference genome | 352,472 | 44,689 | Dictyostelium discoideum AX4 | strain=AX4 | na | latest | Chromosome | Major | Full | 2009-08-24 | dicty_2.7 | The Dictyostelium discoideum Sequencing Consortium | GCF_000004695.1 | different | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/004/695/GCA_000004695.1_dicty_2.7/ | na | na | na | haploid | protozoa | 34,134,454 | 34,111,454 | 22.5 | 6 | 39 | 259 | The Dictyostelium discoideum Sequencing Consortium | Annotation submitted by The Dictyostelium discoideum Sequencing Consortium | 2009-08-24 | 13892 | 13243 | 486 | 12097910;15875012 |
GCA_000004775.1 | PRJNA20223 | SAMN00003081 | ADAO00000000.1 | na | 7,426 | 7,426 | Nasonia giraulti | strain=RV2x(U) | na | latest | Scaffold | Major | Full | 2010-01-15 | Ngir_1.0 | Baylor College of Medicine | na | na | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/004/775/GCA_000004775.1_Ngir_1.0/ | na | na | na | haploid | invertebrate | 283,606,953 | 179,091,496 | 43 | 0 | 4,912 | 373,227 | na | na | null | 0 | 0 | 0 | 20075255 |
GCA_000004795.1 | PRJNA20225 | SAMN00003080 | ADAP00000000.1 | reference genome | 7,427 | 7,427 | Nasonia longicornis | strain=IV7(U) | na | latest | Scaffold | Major | Full | 2010-01-15 | Nlon_1.0 | Baylor College of Medicine | na | na | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/004/795/GCA_000004795.1_Nlon_1.0/ | na | na | na | haploid | invertebrate | 285,726,340 | 181,920,785 | 42.5 | 0 | 5,214 | 385,077 | na | na | null | 0 | 0 | 0 | 20075255 |
GCA_000004825.1 | PRJNA40191 | SAMN02953767 | ADBJ00000000.1 | reference genome | 670,386 | 2,086,695 | Heterostelium album PN500 | strain=PN500 | na | latest | Scaffold | Major | Full | 2010-01-29 | PolPal_Dec2009 | Leibniz Institute for Age Research - Fritz Lipmann Institute | GCF_000004825.1 | identical | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/004/825/GCA_000004825.1_PolPal_Dec2009/ | na | na | na | haploid | protozoa | 32,970,186 | 32,968,086 | 32 | 1 | 43 | 64 | Leibniz Institute for Age Research - Fritz Lipmann Institute | Annotation submitted by Leibniz Institute for Age Research - Fritz Lipmann Institute | 2010-01-29 | 12621 | 12367 | 254 | 21757610 |
GCA_000004845.2 | PRJNA42199 | SAMN00003318 | ADDF00000000.2 | na | 9,606 | 9,606 | Homo sapiens | na | na | latest | Scaffold | Major | Full | 2013-06-10 | YH_2.0 | Beijing Genomics Institute | na | na | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/004/845/GCA_000004845.2_YH_2.0/ | na | na | na | haploid | vertebrate_mammalian | 2,911,235,363 | 2,806,031,133 | 41 | 0 | 125,643 | 361,157 | na | na | null | 0 | 0 | 0 | 19997067 |
GCA_000004985.1 | PRJNA14010 | SAMN02953745 | ACER00000000.1 | reference genome | 5,762 | 5,762 | Naegleria gruberi | strain=NEG-M | na | latest | Scaffold | Major | Full | 2010-01-20 | V1.0 | US DOE Joint Genome Institute (JGI-PGF) | GCF_000004985.1 | identical | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/004/985/GCA_000004985.1_V1.0/ | na | na | na | haploid | protozoa | 40,964,085 | 36,295,316 | 33 | 0 | 784 | 1,977 | US DOE Joint Genome Institute (JGI-PGF) | Annotation submitted by US DOE Joint Genome Institute (JGI-PGF) | 2016-07-25 | 16620 | 15709 | 875 | 20211133 |
GCA_000005005.6 | PRJNA10769 | SAMN04296295 | LPUQ00000000.1 | na | 4,577 | 4,577 | Zea mays | cultivar=B73 | na | latest | Chromosome | Major | Full | 2017-02-07 | B73 RefGen_v4 | maizesequence | GCF_000005005.2 | different | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/005/005/GCA_000005005.6_B73_RefGen_v4/ | superseded by newer assembly for species | na | na | haploid | plant | 2,134,373,047 | 2,103,640,169 | 47 | 10 | 596 | 2,787 | maizesequence | Annotation submitted by maizesequence | 2017-02-07 | 39320 | 39320 | 0 | 28605751 |
GCA_000005115.1 | PRJNA12651 | SAMN02953648 | AAPP00000000.1 | na | 7,217 | 7,217 | Drosophila ananassae | strain=TSC#14024-0371.13 | na | latest | Scaffold | Major | Full | 2006-06-30 | dana_caf1 | Agencourt Bioscience Corporation | GCF_000005115.1 | identical | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/005/115/GCA_000005115.1_dana_caf1/ | superseded by newer assembly for species | na | na | haploid | invertebrate | 230,993,012 | 213,918,817 | 42 | 0 | 13,749 | 20,532 | FlyBase | FlyBase Release 1.04 | 2015-10-16 | 15807 | 14365 | 1168 | 17994087;18057021 |
GCA_000005135.1 | PRJNA12661 | SAMN02953649 | AAPQ00000000.1 | na | 7,220 | 7,220 | Drosophila erecta | strain=TSC#14021-0224.01 | na | latest | Scaffold | Major | Full | 2006-07-12 | dere_caf1 | Agencourt Bioscience Corporation | GCF_000005135.1 | identical | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/005/135/GCA_000005135.1_dere_caf1/ | superseded by newer assembly for species | na | na | haploid | invertebrate | 152,712,140 | 145,084,019 | 42.5 | 0 | 5,124 | 7,610 | FlyBase | FlyBase Release 1.04 | 2015-11-02 | 14758 | 13605 | 953 | 17994087;18057021 |
GCA_000005155.1 | PRJNA12678 | SAMN02953650 | AAPT00000000.1 | na | 7,222 | 7,222 | Drosophila grimshawi | strain=TSC#15287-2541.00 | na | latest | Scaffold | Major | Full | 2006-06-30 | dgri_caf1 | Agencourt Bioscience Corporation | GCF_000005155.2 | identical | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/005/155/GCA_000005155.1_dgri_caf1/ | superseded by newer assembly for species | na | na | haploid | invertebrate | 200,467,819 | 186,090,669 | 38 | 0 | 17,440 | 24,157 | Agencourt Bioscience Corporation | Annotation submitted by Agencourt Bioscience Corporation | 2016-07-14 | 15585 | 14982 | 602 | 17994087;18057021 |
GCA_000005175.1 | PRJNA12682 | SAMN02953651 | AAPU00000000.1 | na | 7,230 | 7,230 | Drosophila mojavensis | strain=TSC#15081-1352.22 | na | latest | Scaffold | Major | Full | 2006-06-30 | dmoj_caf1 | Agencourt Bioscience Corporation | GCF_000005175.2 | identical | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/005/175/GCA_000005175.1_dmoj_caf1/ | superseded by newer assembly for species | na | na | haploid | invertebrate | 193,826,310 | 180,207,831 | 39.5 | 0 | 6,841 | 11,874 | FlyBase | FlyBase Release 1.04 | 2015-11-03 | 14680 | 13425 | 1090 | 17994087;18057021 |
GCA_000005195.1 | PRJNA12705 | SAMN02953632 | AAIZ00000000.1 | na | 7,234 | 7,234 | Drosophila persimilis | strain=MSH-3 | na | latest | Scaffold | Major | Full | 2006-04-18 | dper_caf1 | Broad Institute | GCF_000005195.2 | identical | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/005/195/GCA_000005195.1_dper_caf1/ | superseded by newer assembly for species | na | na | haploid | invertebrate | 188,374,079 | 175,583,556 | 45 | 0 | 12,838 | 26,813 | Broad Institute | Annotation submitted by Broad Institute | 2016-07-26 | 17573 | 16874 | 698 | 17994087 |
GCA_000005215.1 | PRJNA12711 | SAMN02953639 | AAKO00000000.1 | na | 7,238 | 7,238 | Drosophila sechellia | strain=Rob3c | na | latest | Scaffold | Major | Full | 2006-04-18 | dsec_caf1 | Broad Institute | GCF_000005215.3 | different | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/005/215/GCA_000005215.1_dsec_caf1/ | superseded by newer assembly for species | na | na | haploid | invertebrate | 166,577,145 | 157,238,575 | 42 | 0 | 14,730 | 21,425 | Broad Institute | Annotation submitted by Broad Institute | 2016-07-26 | 17273 | 16467 | 793 | 17994087 |
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