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The dataset generation failed because of a cast error
Error code:   DatasetGenerationCastError
Exception:    DatasetGenerationCastError
Message:      An error occurred while generating the dataset

All the data files must have the same columns, but at some point there are 68 new columns ({'TOPPIC_protein_description', 'TOPPIC_protein_n-terminal_form', 'MZML_isolation_window_upper_offset', 'MZML_collision_energy', 'TOPPIC_variable_modifications', 'TOPPIC_special_amino_acids', 'TOPPIC_e-value', 'TOPPIC_proteoform_id', 'TOPPIC_adjusted_precursor_mass', 'MZML_isolation_window_lower_offset', 'TOPPIC_proteoform_intensity', 'MZML_ms2_mass_resolving_power', 'TOPPIC_proteoform', 'MZML_selected_ion_mz', 'MSALIGN_feature_intensity', 'MZML_ms1_scan', 'TOPPIC_unexpected_modifications', 'TOPPIC_number_of_variable_modifications', 'PROJECT_id', 'MZML_ms2_scan_window_lower_limit', 'MZML_ms1_total_ion_current', 'TOPPIC_previous_residue', 'MZML_instrument', 'TOPPIC_miscore', 'MZML_ms1_lowest_observed_mz', 'MZML_ms2_lowest_observed_mz', 'TOPPIC_number_of_unexpected_modifications', 'TOPPIC_prsm_id', 'MZML_ms2_scan_window_upper_limit', 'MZML_ms2_ion_injection_time', 'MSALIGN_feature_id', 'TOPPIC_fixed_modifications', 'SUBDATASET_id', 'MZML_isolation_window_target_mz', 'MSALIGN_feature_apex_time', 'MSALIGN_number_of_fragment_ions', 'TOPPIC_number_of_matched_theoretical_fragment_masses', 'MZML_ms1_scan_window_lower_limit', 'MSALIGN_precursor_monoisotopic_mass', 'MSALIGN_ms2_id', 'MZML_selected_ion_peak_intensity', 'MZML_ms1_ion_injection_time', 'MZML_selected_ion_charge', 'TOPPIC_proteoform-level_q-value', 'MSALIGN_precursor_intensity', 'TOPPIC_protein_accession', 'MZML_ms1_retention_time', 'MZML_ms2_highest_observed_mz', 'TOPPIC_proteoform_mass', 'MSALIGN_file_name', 'MSALIGN_feature_score', 'TOPPIC_number_of_matched_experimental_fragment_ions', 'MZML_ms2_retention_time', 'MSALIGN_ms1_id', 'MZML_activation', 'TOPPIC_next_residue', 'DATASET_id', 'MZML_ms1_mass_resolving_power', 'MSALIGN_precursor_charge', 'TOPPIC_spectrum-level_q-value', 'MZML_ms2_scan', 'MZML_ms2_total_ion_current', 'TOPPIC_first_residue_position', 'MZML_ms1_highest_observed_mz', 'TOPPIC_number_of_protein_hits', 'TOPPIC_database_sequence', 'MZML_ms1_scan_window_upper_limit', 'TOPPIC_last_residue_position'}) and 14 missing columns ({'Dissociation', 'Raw_file_name', 'Cysteine_protection', 'Instrument', 'Species', '#PrSM_ids', '#Protein_ids', 'FAIMS', 'Dataset_id', '#Msalign_files', 'Separation', '#MS/MS_spectra', '#Proteoform_ids', 'Sample'}).

This happened while the csv dataset builder was generating data using

hf://datasets/TopRepo/Mouse/toprepo_mouse_spectrum_table_ms2_v1.2.0.tsv (at revision 886ef1df5245f73ca7e10b844258b9134b8dfe64), [/tmp/hf-datasets-cache/medium/datasets/76847967296156-config-parquet-and-info-TopRepo-Mouse-a514bd0e/hub/datasets--TopRepo--Mouse/snapshots/886ef1df5245f73ca7e10b844258b9134b8dfe64/toprepo_mouse_meta_table_v1.2.0.tsv (origin=hf://datasets/TopRepo/Mouse@886ef1df5245f73ca7e10b844258b9134b8dfe64/toprepo_mouse_meta_table_v1.2.0.tsv), /tmp/hf-datasets-cache/medium/datasets/76847967296156-config-parquet-and-info-TopRepo-Mouse-a514bd0e/hub/datasets--TopRepo--Mouse/snapshots/886ef1df5245f73ca7e10b844258b9134b8dfe64/toprepo_mouse_spectrum_table_ms2_v1.2.0.tsv (origin=hf://datasets/TopRepo/Mouse@886ef1df5245f73ca7e10b844258b9134b8dfe64/toprepo_mouse_spectrum_table_ms2_v1.2.0.tsv)]

Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback:    Traceback (most recent call last):
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1800, in _prepare_split_single
                  writer.write_table(table)
                File "/usr/local/lib/python3.12/site-packages/datasets/arrow_writer.py", line 765, in write_table
                  self._write_table(pa_table, writer_batch_size=writer_batch_size)
                File "/usr/local/lib/python3.12/site-packages/datasets/arrow_writer.py", line 773, in _write_table
                  pa_table = table_cast(pa_table, self._schema)
                             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2321, in table_cast
                  return cast_table_to_schema(table, schema)
                         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2249, in cast_table_to_schema
                  raise CastError(
              datasets.table.CastError: Couldn't cast
              PROJECT_id: int64
              SUBDATASET_id: int64
              DATASET_id: string
              MZML_file_name: string
              MZML_instrument: string
              MZML_ms1_scan: int64
              MZML_ms1_scan_window_lower_limit: double
              MZML_ms1_scan_window_upper_limit: double
              MZML_ms1_retention_time: double
              MZML_ms1_total_ion_current: double
              MZML_ms1_mass_resolving_power: double
              MZML_ms1_ion_injection_time: double
              MZML_ms1_lowest_observed_mz: double
              MZML_ms1_highest_observed_mz: double
              MZML_ms2_scan: int64
              MZML_ms2_scan_window_lower_limit: double
              MZML_ms2_scan_window_upper_limit: double
              MZML_ms2_retention_time: double
              MZML_ms2_total_ion_current: double
              MZML_ms2_mass_resolving_power: double
              MZML_ms2_ion_injection_time: double
              MZML_ms2_lowest_observed_mz: double
              MZML_ms2_highest_observed_mz: double
              MZML_isolation_window_target_mz: double
              MZML_isolation_window_lower_offset: double
              MZML_isolation_window_upper_offset: double
              MZML_selected_ion_mz: double
              MZML_selected_ion_peak_intensity: double
              MZML_selected_ion_charge: double
              MZML_activation: string
              MZML_collision_energy: double
              MSALIGN_file_name: string
              MSALIGN_ms1_id: int64
              MSALIGN_ms2_id: int64
              MSALIGN_precursor_charge: string
              MSALIGN_precursor_monoisotopic_mass: string
              MSALIGN_precursor_intensity: string
              MSALIGN_feature_id: string
              MSALIGN_feature_intensity: string
              MSALIGN_feature_score: string
              MSALIGN_feature_apex_time: string
              MSALIGN_number_of_fragment_ions: int64
              TOPPIC_prsm_id: double
              TOPPIC_adjusted_precursor_mass: double
              TOPPIC_proteoform_id: double
              TOPPIC_proteoform_intensity: double
              TOPPIC_number_of_protein_hits: double
              TOPPIC_protein_accession: string
              TOPPIC_protein_description: string
              TOPPIC_first_residue_position: double
              TOPPIC_last_residue_position: double
              TOPPIC_special_amino_acids: double
              TOPPIC_database_sequence: string
              TOPPIC_proteoform_mass: double
              TOPPIC_protein_n-terminal_form: string
              TOPPIC_fixed_modifications: double
              TOPPIC_number_of_unexpected_modifications: double
              TOPPIC_unexpected_modifications: string
              TOPPIC_number_of_variable_modifications: double
              TOPPIC_variable_modifications: double
              TOPPIC_miscore: string
              TOPPIC_number_of_matched_experimental_fragment_ions: double
              TOPPIC_number_of_matched_theoretical_fragment_masses: double
              TOPPIC_e-value: double
              TOPPIC_spectrum-level_q-value: double
              TOPPIC_proteoform-level_q-value: double
              TOPPIC_proteoform: string
              TOPPIC_previous_residue: string
              TOPPIC_next_residue: string
              -- schema metadata --
              pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 10669
              to
              {'Dataset_id': Value('string'), 'Raw_file_name': Value('string'), 'MZML_file_name': Value('string'), '#Msalign_files': Value('int64'), '#MS/MS_spectra': Value('int64'), '#PrSM_ids': Value('int64'), '#Proteoform_ids': Value('int64'), '#Protein_ids': Value('int64'), 'Species': Value('string'), 'Instrument': Value('string'), 'Dissociation': Value('string'), 'Sample': Value('string'), 'Separation': Value('string'), 'Cysteine_protection': Value('string'), 'FAIMS': Value('string')}
              because column names don't match
              
              During handling of the above exception, another exception occurred:
              
              Traceback (most recent call last):
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1348, in compute_config_parquet_and_info_response
                  parquet_operations = convert_to_parquet(builder)
                                       ^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 980, in convert_to_parquet
                  builder.download_and_prepare(
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 882, in download_and_prepare
                  self._download_and_prepare(
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 943, in _download_and_prepare
                  self._prepare_split(split_generator, **prepare_split_kwargs)
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1646, in _prepare_split
                  for job_id, done, content in self._prepare_split_single(
                                               ^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1802, in _prepare_split_single
                  raise DatasetGenerationCastError.from_cast_error(
              datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
              
              All the data files must have the same columns, but at some point there are 68 new columns ({'TOPPIC_protein_description', 'TOPPIC_protein_n-terminal_form', 'MZML_isolation_window_upper_offset', 'MZML_collision_energy', 'TOPPIC_variable_modifications', 'TOPPIC_special_amino_acids', 'TOPPIC_e-value', 'TOPPIC_proteoform_id', 'TOPPIC_adjusted_precursor_mass', 'MZML_isolation_window_lower_offset', 'TOPPIC_proteoform_intensity', 'MZML_ms2_mass_resolving_power', 'TOPPIC_proteoform', 'MZML_selected_ion_mz', 'MSALIGN_feature_intensity', 'MZML_ms1_scan', 'TOPPIC_unexpected_modifications', 'TOPPIC_number_of_variable_modifications', 'PROJECT_id', 'MZML_ms2_scan_window_lower_limit', 'MZML_ms1_total_ion_current', 'TOPPIC_previous_residue', 'MZML_instrument', 'TOPPIC_miscore', 'MZML_ms1_lowest_observed_mz', 'MZML_ms2_lowest_observed_mz', 'TOPPIC_number_of_unexpected_modifications', 'TOPPIC_prsm_id', 'MZML_ms2_scan_window_upper_limit', 'MZML_ms2_ion_injection_time', 'MSALIGN_feature_id', 'TOPPIC_fixed_modifications', 'SUBDATASET_id', 'MZML_isolation_window_target_mz', 'MSALIGN_feature_apex_time', 'MSALIGN_number_of_fragment_ions', 'TOPPIC_number_of_matched_theoretical_fragment_masses', 'MZML_ms1_scan_window_lower_limit', 'MSALIGN_precursor_monoisotopic_mass', 'MSALIGN_ms2_id', 'MZML_selected_ion_peak_intensity', 'MZML_ms1_ion_injection_time', 'MZML_selected_ion_charge', 'TOPPIC_proteoform-level_q-value', 'MSALIGN_precursor_intensity', 'TOPPIC_protein_accession', 'MZML_ms1_retention_time', 'MZML_ms2_highest_observed_mz', 'TOPPIC_proteoform_mass', 'MSALIGN_file_name', 'MSALIGN_feature_score', 'TOPPIC_number_of_matched_experimental_fragment_ions', 'MZML_ms2_retention_time', 'MSALIGN_ms1_id', 'MZML_activation', 'TOPPIC_next_residue', 'DATASET_id', 'MZML_ms1_mass_resolving_power', 'MSALIGN_precursor_charge', 'TOPPIC_spectrum-level_q-value', 'MZML_ms2_scan', 'MZML_ms2_total_ion_current', 'TOPPIC_first_residue_position', 'MZML_ms1_highest_observed_mz', 'TOPPIC_number_of_protein_hits', 'TOPPIC_database_sequence', 'MZML_ms1_scan_window_upper_limit', 'TOPPIC_last_residue_position'}) and 14 missing columns ({'Dissociation', 'Raw_file_name', 'Cysteine_protection', 'Instrument', 'Species', '#PrSM_ids', '#Protein_ids', 'FAIMS', 'Dataset_id', '#Msalign_files', 'Separation', '#MS/MS_spectra', '#Proteoform_ids', 'Sample'}).
              
              This happened while the csv dataset builder was generating data using
              
              hf://datasets/TopRepo/Mouse/toprepo_mouse_spectrum_table_ms2_v1.2.0.tsv (at revision 886ef1df5245f73ca7e10b844258b9134b8dfe64), [/tmp/hf-datasets-cache/medium/datasets/76847967296156-config-parquet-and-info-TopRepo-Mouse-a514bd0e/hub/datasets--TopRepo--Mouse/snapshots/886ef1df5245f73ca7e10b844258b9134b8dfe64/toprepo_mouse_meta_table_v1.2.0.tsv (origin=hf://datasets/TopRepo/Mouse@886ef1df5245f73ca7e10b844258b9134b8dfe64/toprepo_mouse_meta_table_v1.2.0.tsv), /tmp/hf-datasets-cache/medium/datasets/76847967296156-config-parquet-and-info-TopRepo-Mouse-a514bd0e/hub/datasets--TopRepo--Mouse/snapshots/886ef1df5245f73ca7e10b844258b9134b8dfe64/toprepo_mouse_spectrum_table_ms2_v1.2.0.tsv (origin=hf://datasets/TopRepo/Mouse@886ef1df5245f73ca7e10b844258b9134b8dfe64/toprepo_mouse_spectrum_table_ms2_v1.2.0.tsv)]
              
              Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)

Need help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.

Dataset_id
string
Raw_file_name
string
MZML_file_name
string
#Msalign_files
int64
#MS/MS_spectra
int64
#PrSM_ids
int64
#Proteoform_ids
int64
#Protein_ids
int64
Species
string
Instrument
string
Dissociation
string
Sample
string
Separation
string
Cysteine_protection
null
FAIMS
string
MSV000093727
Alz_DiffSol_Comp_Mouse1_LH_HFIP_R1_Aragorn_13Feb21_21-01-03.raw
Alz_DiffSol_Comp_Mouse1_LH_HFIP_R1_Aragorn_13Feb21_21-01-03.mzML
3
10,588
5,593
3,110
500
Mouse
Orbitrap Fusion Lumos
CID
Brain tissue (WT C57BL/6 J)
RPLC
null
Yes
MSV000093727
Alz_DiffSol_Comp_Mouse1_LH_HFIP_R2_Aragorn_31Dec21_21-11-03.raw
Alz_DiffSol_Comp_Mouse1_LH_HFIP_R2_Aragorn_31Dec21_21-11-03.mzML
3
10,953
6,994
4,092
673
Mouse
Orbitrap Fusion Lumos
CID
Brain tissue (WT C57BL/6 J)
RPLC
null
Yes
MSV000093727
Alz_DiffSol_Comp_Mouse1_LH_HFIP_R3_Aragorn_28May21_21-02-02.raw
Alz_DiffSol_Comp_Mouse1_LH_HFIP_R3_Aragorn_28May21_21-02-02.mzML
3
11,053
7,364
3,723
638
Mouse
Orbitrap Fusion Lumos
CID
Brain tissue (WT C57BL/6 J)
RPLC
null
Yes
MSV000093727
Alz_DiffSol_Comp_Mouse1_LH_Urea_R1_Aragorn_13Feb21_21-01-03.raw
Alz_DiffSol_Comp_Mouse1_LH_Urea_R1_Aragorn_13Feb21_21-01-03.mzML
3
9,450
4,134
2,264
540
Mouse
Orbitrap Fusion Lumos
CID
Brain tissue (WT C57BL/6 J)
RPLC
null
Yes
MSV000093727
Alz_DiffSol_Comp_Mouse1_LH_Urea_R2_Aragorn_28Dec21_21-11-03.raw
Alz_DiffSol_Comp_Mouse1_LH_Urea_R2_Aragorn_28Dec21_21-11-03.mzML
3
10,603
4,141
2,232
618
Mouse
Orbitrap Fusion Lumos
CID
Brain tissue (WT C57BL/6 J)
RPLC
null
Yes
MSV000093727
Alz_DiffSol_Comp_Mouse1_LH_Urea_R3_Aragorn_27May21_21-02-02.raw
Alz_DiffSol_Comp_Mouse1_LH_Urea_R3_Aragorn_27May21_21-02-02.mzML
3
10,397
4,875
2,473
627
Mouse
Orbitrap Fusion Lumos
CID
Brain tissue (WT C57BL/6 J)
RPLC
null
Yes
MSV000093727
Alz_DiffSol_Comp_Mouse1_RH_HFIP_R1_Aragorn_13Feb21_21-01-03.raw
Alz_DiffSol_Comp_Mouse1_RH_HFIP_R1_Aragorn_13Feb21_21-01-03.mzML
3
10,647
5,584
2,950
456
Mouse
Orbitrap Fusion Lumos
CID
Brain tissue (WT C57BL/6 J)
RPLC
null
Yes
MSV000093727
Alz_DiffSol_Comp_Mouse1_RH_HFIP_R2_Aragorn_31Dec21_21-11-03.raw
Alz_DiffSol_Comp_Mouse1_RH_HFIP_R2_Aragorn_31Dec21_21-11-03.mzML
3
10,963
6,616
3,635
542
Mouse
Orbitrap Fusion Lumos
CID
Brain tissue (WT C57BL/6 J)
RPLC
null
Yes
MSV000093727
Alz_DiffSol_Comp_Mouse1_RH_HFIP_R3_Aragorn_27May21_21-02-02.raw
Alz_DiffSol_Comp_Mouse1_RH_HFIP_R3_Aragorn_27May21_21-02-02.mzML
3
11,023
7,104
3,276
522
Mouse
Orbitrap Fusion Lumos
CID
Brain tissue (WT C57BL/6 J)
RPLC
null
Yes
MSV000093727
Alz_DiffSol_Comp_Mouse1_RH_Urea_R1_Aragorn_13Feb21_21-01-03.raw
Alz_DiffSol_Comp_Mouse1_RH_Urea_R1_Aragorn_13Feb21_21-01-03.mzML
3
9,265
3,838
2,111
531
Mouse
Orbitrap Fusion Lumos
CID
Brain tissue (WT C57BL/6 J)
RPLC
null
Yes
MSV000093727
Alz_DiffSol_Comp_Mouse1_RH_Urea_R2_Aragorn_28Dec21_21-11-03.raw
Alz_DiffSol_Comp_Mouse1_RH_Urea_R2_Aragorn_28Dec21_21-11-03.mzML
3
10,395
3,807
2,113
595
Mouse
Orbitrap Fusion Lumos
CID
Brain tissue (WT C57BL/6 J)
RPLC
null
Yes
MSV000093727
Alz_DiffSol_Comp_Mouse1_RH_Urea_R3_Aragorn_27May21_21-02-02.raw
Alz_DiffSol_Comp_Mouse1_RH_Urea_R3_Aragorn_27May21_21-02-02.mzML
3
10,203
4,597
2,304
631
Mouse
Orbitrap Fusion Lumos
CID
Brain tissue (WT C57BL/6 J)
RPLC
null
Yes
MSV000093727
Alz_DiffSol_Comp_Mouse2_LH_HFIP_R1_Aragorn_13Feb21_21-01-03.raw
Alz_DiffSol_Comp_Mouse2_LH_HFIP_R1_Aragorn_13Feb21_21-01-03.mzML
3
10,783
6,443
3,456
526
Mouse
Orbitrap Fusion Lumos
CID
Brain tissue (WT C57BL/6 J)
RPLC
null
Yes
MSV000093727
Alz_DiffSol_Comp_Mouse2_LH_HFIP_R2_Aragorn_28Dec21_21-11-03.raw
Alz_DiffSol_Comp_Mouse2_LH_HFIP_R2_Aragorn_28Dec21_21-11-03.mzML
3
10,972
7,030
3,858
640
Mouse
Orbitrap Fusion Lumos
CID
Brain tissue (WT C57BL/6 J)
RPLC
null
Yes
MSV000093727
Alz_DiffSol_Comp_Mouse2_LH_HFIP_R3_Aragorn_27May21_21-02-02.raw
Alz_DiffSol_Comp_Mouse2_LH_HFIP_R3_Aragorn_27May21_21-02-02.mzML
3
11,150
7,693
3,737
618
Mouse
Orbitrap Fusion Lumos
CID
Brain tissue (WT C57BL/6 J)
RPLC
null
Yes
MSV000093727
Alz_DiffSol_Comp_Mouse2_LH_Urea_R1_Aragorn_13Feb21_21-01-03.raw
Alz_DiffSol_Comp_Mouse2_LH_Urea_R1_Aragorn_13Feb21_21-01-03.mzML
3
9,595
4,279
2,379
609
Mouse
Orbitrap Fusion Lumos
CID
Brain tissue (WT C57BL/6 J)
RPLC
null
Yes
MSV000093727
Alz_DiffSol_Comp_Mouse2_LH_Urea_R2_Aragorn_28Dec21_21-11-03.raw
Alz_DiffSol_Comp_Mouse2_LH_Urea_R2_Aragorn_28Dec21_21-11-03.mzML
3
10,603
4,311
2,380
669
Mouse
Orbitrap Fusion Lumos
CID
Brain tissue (WT C57BL/6 J)
RPLC
null
Yes
MSV000093727
Alz_DiffSol_Comp_Mouse2_LH_Urea_R3_Aragorn_27May21_21-02-02.raw
Alz_DiffSol_Comp_Mouse2_LH_Urea_R3_Aragorn_27May21_21-02-02.mzML
3
10,316
4,862
2,491
637
Mouse
Orbitrap Fusion Lumos
CID
Brain tissue (WT C57BL/6 J)
RPLC
null
Yes
MSV000093727
Alz_DiffSol_Comp_Mouse2_RH_HFIP_R1_Aragorn_13Feb21_21-01-03.raw
Alz_DiffSol_Comp_Mouse2_RH_HFIP_R1_Aragorn_13Feb21_21-01-03.mzML
3
10,627
6,256
3,430
541
Mouse
Orbitrap Fusion Lumos
CID
Brain tissue (WT C57BL/6 J)
RPLC
null
Yes
MSV000093727
Alz_DiffSol_Comp_Mouse2_RH_HFIP_R2_Aragorn_28Dec21_21-11-03.raw
Alz_DiffSol_Comp_Mouse2_RH_HFIP_R2_Aragorn_28Dec21_21-11-03.mzML
3
10,824
6,694
3,752
620
Mouse
Orbitrap Fusion Lumos
CID
Brain tissue (WT C57BL/6 J)
RPLC
null
Yes
MSV000093727
Alz_DiffSol_Comp_Mouse2_RH_HFIP_R3_Aragorn_27May21_21-02-02.raw
Alz_DiffSol_Comp_Mouse2_RH_HFIP_R3_Aragorn_27May21_21-02-02.mzML
3
10,974
7,376
3,682
617
Mouse
Orbitrap Fusion Lumos
CID
Brain tissue (WT C57BL/6 J)
RPLC
null
Yes
MSV000093727
Alz_DiffSol_Comp_Mouse2_RH_Urea_R1_Aragorn_13Feb21_21-01-03.raw
Alz_DiffSol_Comp_Mouse2_RH_Urea_R1_Aragorn_13Feb21_21-01-03.mzML
3
9,602
4,498
2,552
608
Mouse
Orbitrap Fusion Lumos
CID
Brain tissue (WT C57BL/6 J)
RPLC
null
Yes
MSV000093727
Alz_DiffSol_Comp_Mouse2_RH_Urea_R2_Aragorn_28Dec21_21-11-03.raw
Alz_DiffSol_Comp_Mouse2_RH_Urea_R2_Aragorn_28Dec21_21-11-03.mzML
3
10,611
4,444
2,473
666
Mouse
Orbitrap Fusion Lumos
CID
Brain tissue (WT C57BL/6 J)
RPLC
null
Yes
MSV000093727
Alz_DiffSol_Comp_Mouse2_RH_Urea_R3_Aragorn_27May21_21-02-02.raw
Alz_DiffSol_Comp_Mouse2_RH_Urea_R3_Aragorn_27May21_21-02-02.mzML
3
10,227
5,030
2,589
654
Mouse
Orbitrap Fusion Lumos
CID
Brain tissue (WT C57BL/6 J)
RPLC
null
Yes
MSV000093727
Alz_DiffSol_Comp_Mouse3_LH_HFIP_R1_Aragorn_13Feb21_21-01-03.raw
Alz_DiffSol_Comp_Mouse3_LH_HFIP_R1_Aragorn_13Feb21_21-01-03.mzML
3
10,759
6,511
3,353
499
Mouse
Orbitrap Fusion Lumos
CID
Brain tissue (WT C57BL/6 J)
RPLC
null
Yes
MSV000093727
Alz_DiffSol_Comp_Mouse3_LH_HFIP_R2_Aragorn_28Dec21_21-11-03.raw
Alz_DiffSol_Comp_Mouse3_LH_HFIP_R2_Aragorn_28Dec21_21-11-03.mzML
3
10,923
6,750
3,592
557
Mouse
Orbitrap Fusion Lumos
CID
Brain tissue (WT C57BL/6 J)
RPLC
null
Yes
MSV000093727
Alz_DiffSol_Comp_Mouse3_LH_HFIP_R3_Aragorn_27May21_21-02-02.raw
Alz_DiffSol_Comp_Mouse3_LH_HFIP_R3_Aragorn_27May21_21-02-02.mzML
3
11,107
7,571
3,620
545
Mouse
Orbitrap Fusion Lumos
CID
Brain tissue (WT C57BL/6 J)
RPLC
null
Yes
MSV000093727
Alz_DiffSol_Comp_Mouse3_LH_Urea_R1_Aragorn_13Feb21_21-01-03.raw
Alz_DiffSol_Comp_Mouse3_LH_Urea_R1_Aragorn_13Feb21_21-01-03.mzML
3
9,433
4,229
2,461
595
Mouse
Orbitrap Fusion Lumos
CID
Brain tissue (WT C57BL/6 J)
RPLC
null
Yes
MSV000093727
Alz_DiffSol_Comp_Mouse3_LH_Urea_R2_Aragorn_28Dec21_21-11-03.raw
Alz_DiffSol_Comp_Mouse3_LH_Urea_R2_Aragorn_28Dec21_21-11-03.mzML
3
10,563
4,419
2,448
643
Mouse
Orbitrap Fusion Lumos
CID
Brain tissue (WT C57BL/6 J)
RPLC
null
Yes
MSV000093727
Alz_DiffSol_Comp_Mouse3_LH_Urea_R3_Aragorn_27May21_21-02-02.raw
Alz_DiffSol_Comp_Mouse3_LH_Urea_R3_Aragorn_27May21_21-02-02.mzML
3
10,132
4,850
2,504
629
Mouse
Orbitrap Fusion Lumos
CID
Brain tissue (WT C57BL/6 J)
RPLC
null
Yes
MSV000093727
Alz_DiffSol_Comp_Mouse3_RH_HFIP_R1_Aragorn_13Feb21_21-01-03.raw
Alz_DiffSol_Comp_Mouse3_RH_HFIP_R1_Aragorn_13Feb21_21-01-03.mzML
3
10,421
6,256
3,244
488
Mouse
Orbitrap Fusion Lumos
CID
Brain tissue (WT C57BL/6 J)
RPLC
null
Yes
MSV000093727
Alz_DiffSol_Comp_Mouse3_RH_HFIP_R2_Aragorn_28Dec21_21-11-03.raw
Alz_DiffSol_Comp_Mouse3_RH_HFIP_R2_Aragorn_28Dec21_21-11-03.mzML
3
10,861
6,616
3,624
586
Mouse
Orbitrap Fusion Lumos
CID
Brain tissue (WT C57BL/6 J)
RPLC
null
Yes
MSV000093727
Alz_DiffSol_Comp_Mouse3_RH_HFIP_R3_Aragorn_27May21_21-02-02.raw
Alz_DiffSol_Comp_Mouse3_RH_HFIP_R3_Aragorn_27May21_21-02-02.mzML
3
11,029
7,362
3,466
538
Mouse
Orbitrap Fusion Lumos
CID
Brain tissue (WT C57BL/6 J)
RPLC
null
Yes
MSV000093727
Alz_DiffSol_Comp_Mouse3_RH_Urea_R1_Aragorn_13Feb21_21-01-03.raw
Alz_DiffSol_Comp_Mouse3_RH_Urea_R1_Aragorn_13Feb21_21-01-03.mzML
3
9,479
4,387
2,526
579
Mouse
Orbitrap Fusion Lumos
CID
Brain tissue (WT C57BL/6 J)
RPLC
null
Yes
MSV000093727
Alz_DiffSol_Comp_Mouse3_RH_Urea_R2_Aragorn_28Dec21_21-11-03.raw
Alz_DiffSol_Comp_Mouse3_RH_Urea_R2_Aragorn_28Dec21_21-11-03.mzML
3
10,562
4,606
2,539
661
Mouse
Orbitrap Fusion Lumos
CID
Brain tissue (WT C57BL/6 J)
RPLC
null
Yes
MSV000093727
Alz_DiffSol_Comp_Mouse3_RH_Urea_R3_Aragorn_27May21_21-02-02.raw
Alz_DiffSol_Comp_Mouse3_RH_Urea_R3_Aragorn_27May21_21-02-02.mzML
3
10,090
4,987
2,553
634
Mouse
Orbitrap Fusion Lumos
CID
Brain tissue (WT C57BL/6 J)
RPLC
null
Yes
MSV000093727
Alz_DiffSol_Control_Mouse1_R1_Aragorn_13Feb21_21-01-03.raw
Alz_DiffSol_Control_Mouse1_R1_Aragorn_13Feb21_21-01-03.mzML
3
9,866
5,596
3,545
742
Mouse
Orbitrap Fusion Lumos
CID
Brain tissue (WT C57BL/6 J)
RPLC
null
Yes
MSV000093727
Alz_DiffSol_Control_Mouse1_R2_Aragorn_28Dec21_21-11-03.raw
Alz_DiffSol_Control_Mouse1_R2_Aragorn_28Dec21_21-11-03.mzML
3
10,989
6,250
3,938
849
Mouse
Orbitrap Fusion Lumos
CID
Brain tissue (WT C57BL/6 J)
RPLC
null
Yes
MSV000093727
Alz_DiffSol_Control_Mouse1_R3_Aragorn_27May21_21-02-02.raw
Alz_DiffSol_Control_Mouse1_R3_Aragorn_27May21_21-02-02.mzML
3
10,873
6,511
3,852
838
Mouse
Orbitrap Fusion Lumos
CID
Brain tissue (WT C57BL/6 J)
RPLC
null
Yes
MSV000093727
Alz_DiffSol_Control_Mouse2_R1_Aragorn_13Feb21_21-01-03.raw
Alz_DiffSol_Control_Mouse2_R1_Aragorn_13Feb21_21-01-03.mzML
3
9,958
5,877
3,609
760
Mouse
Orbitrap Fusion Lumos
CID
Brain tissue (WT C57BL/6 J)
RPLC
null
Yes
MSV000093727
Alz_DiffSol_Control_Mouse2_R2_Aragorn_28Dec21_21-11-03.raw
Alz_DiffSol_Control_Mouse2_R2_Aragorn_28Dec21_21-11-03.mzML
3
11,009
6,332
3,916
815
Mouse
Orbitrap Fusion Lumos
CID
Brain tissue (WT C57BL/6 J)
RPLC
null
Yes
MSV000093727
Alz_DiffSol_Control_Mouse2_R3_Aragorn_27May21_21-02-02.raw
Alz_DiffSol_Control_Mouse2_R3_Aragorn_27May21_21-02-02.mzML
3
10,954
6,665
3,915
822
Mouse
Orbitrap Fusion Lumos
CID
Brain tissue (WT C57BL/6 J)
RPLC
null
Yes
MSV000093727
Alz_DiffSol_Control_Mouse3_R1_Aragorn_13Feb21_21-01-03.raw
Alz_DiffSol_Control_Mouse3_R1_Aragorn_13Feb21_21-01-03.mzML
3
9,919
5,820
3,587
720
Mouse
Orbitrap Fusion Lumos
CID
Brain tissue (WT C57BL/6 J)
RPLC
null
Yes
MSV000093727
Alz_DiffSol_Control_Mouse3_R2_Aragorn_28Dec21_21-11-03.raw
Alz_DiffSol_Control_Mouse3_R2_Aragorn_28Dec21_21-11-03.mzML
3
11,032
6,320
3,888
810
Mouse
Orbitrap Fusion Lumos
CID
Brain tissue (WT C57BL/6 J)
RPLC
null
Yes
MSV000093727
Alz_DiffSol_Control_Mouse3_R3_Aragorn_27May21_21-02-02.raw
Alz_DiffSol_Control_Mouse3_R3_Aragorn_27May21_21-02-02.mzML
3
10,886
6,501
3,788
798
Mouse
Orbitrap Fusion Lumos
CID
Brain tissue (WT C57BL/6 J)
RPLC
null
Yes
IPX0005864000
data01_Haima_mem_F1.raw
data01_Haima_mem_F1.mzML
1
6,419
3,044
983
206
Mouse
Orbitrap Fusion Lumos
HCD
Brain hippocampus
RPLC
null
No
IPX0005864000
data02_Haima_mem_F2.raw
data02_Haima_mem_F2.mzML
1
6,941
3,545
1,053
234
Mouse
Orbitrap Fusion Lumos
HCD
Brain hippocampus
RPLC
null
No
IPX0005864000
data03_Haima_mem_F3.raw
data03_Haima_mem_F3.mzML
1
8,128
3,941
1,026
216
Mouse
Orbitrap Fusion Lumos
HCD
Brain hippocampus
RPLC
null
No
IPX0005864000
data04_Haima_mem_F4.raw
data04_Haima_mem_F4.mzML
1
8,353
3,785
839
210
Mouse
Orbitrap Fusion Lumos
HCD
Brain hippocampus
RPLC
null
No
IPX0005864000
data05_Haima_mem_F5.raw
data05_Haima_mem_F5.mzML
1
8,288
3,549
714
151
Mouse
Orbitrap Fusion Lumos
HCD
Brain hippocampus
RPLC
null
No
IPX0005864000
data06_Haima_mem_F6.raw
data06_Haima_mem_F6.mzML
1
9,040
3,532
649
145
Mouse
Orbitrap Fusion Lumos
HCD
Brain hippocampus
RPLC
null
No
IPX0005864000
data07_Haima_mem_F7.raw
data07_Haima_mem_F7.mzML
1
7,076
2,420
472
122
Mouse
Orbitrap Fusion Lumos
HCD
Brain hippocampus
RPLC
null
No
IPX0005864000
data08_Haima_mem_F8.raw
data08_Haima_mem_F8.mzML
1
6,965
1,691
440
95
Mouse
Orbitrap Fusion Lumos
HCD
Brain hippocampus
RPLC
null
No
IPX0005864000
data09_Haima_mem_F9.raw
data09_Haima_mem_F9.mzML
1
6,428
1,292
447
58
Mouse
Orbitrap Fusion Lumos
HCD
Brain hippocampus
RPLC
null
No
PXD042298
F1_1.raw
F1_1.mzML
1
6,655
22
8
4
Mouse
Q Exactive HF
HCD
Brain
CZE
null
No
PXD042298
F1_2.raw
F1_2.mzML
1
11,824
470
14
7
Mouse
Q Exactive HF
HCD
Brain
CZE
null
No
PXD042298
F2_1.raw
F2_1.mzML
1
12,357
1,632
81
19
Mouse
Q Exactive HF
HCD
Brain
CZE
null
No
PXD042298
F2_2.raw
F2_2.mzML
1
12,943
3,103
99
18
Mouse
Q Exactive HF
HCD
Brain
CZE
null
No
PXD042298
F3_1.raw
F3_1.mzML
1
13,270
3,524
116
34
Mouse
Q Exactive HF
HCD
Brain
CZE
null
No
PXD042298
F3_2.raw
F3_2.mzML
1
12,808
3,779
103
32
Mouse
Q Exactive HF
HCD
Brain
CZE
null
No
PXD042298
F4_1.raw
F4_1.mzML
1
4,650
448
48
18
Mouse
Q Exactive HF
HCD
Brain
CZE
null
No
PXD042298
F4_2.raw
F4_2.mzML
1
5,596
571
29
13
Mouse
Q Exactive HF
HCD
Brain
CZE
null
No
PXD051505
Mit_Old1_T1.raw
Mit_Old1_T1.mzML
1
3,694
633
145
47
Mouse
Orbitrap Exploris 240
HCD
Heart tissue
RPLC
null
No
PXD051505
Mit_Old1_T2.raw
Mit_Old1_T2.mzML
1
3,681
525
125
44
Mouse
Orbitrap Exploris 240
HCD
Heart tissue
RPLC
null
No
PXD051505
Mit_Old2_T1.raw
Mit_Old2_T1.mzML
1
3,604
546
129
44
Mouse
Orbitrap Exploris 240
HCD
Heart tissue
RPLC
null
No
PXD051505
Mit_Old2_T2.raw
Mit_Old2_T2.mzML
1
3,617
538
132
46
Mouse
Orbitrap Exploris 240
HCD
Heart tissue
RPLC
null
No
PXD051505
Mit_Old3_T1.raw
Mit_Old3_T1.mzML
1
3,527
528
134
44
Mouse
Orbitrap Exploris 240
HCD
Heart tissue
RPLC
null
No
PXD051505
Mit_Old3_T2.raw
Mit_Old3_T2.mzML
1
3,469
529
135
43
Mouse
Orbitrap Exploris 240
HCD
Heart tissue
RPLC
null
No
PXD051505
Mit_Young1_T1.raw
Mit_Young1_T1.mzML
1
7,244
1,436
284
81
Mouse
Orbitrap Exploris 240
HCD
Heart tissue
RPLC
null
No
PXD051505
Mit_Young1_T2.raw
Mit_Young1_T2.mzML
1
7,343
1,458
271
82
Mouse
Orbitrap Exploris 240
HCD
Heart tissue
RPLC
null
No
PXD051505
Mit_Young2_T1.raw
Mit_Young2_T1.mzML
1
3,728
575
135
50
Mouse
Orbitrap Exploris 240
HCD
Heart tissue
RPLC
null
No
PXD051505
Mit_Young2_T2.raw
Mit_Young2_T2.mzML
1
3,767
617
132
49
Mouse
Orbitrap Exploris 240
HCD
Heart tissue
RPLC
null
No
PXD051505
Mit_Young3_T1.raw
Mit_Young3_T1.mzML
1
3,785
594
132
42
Mouse
Orbitrap Exploris 240
HCD
Heart tissue
RPLC
null
No
PXD051505
Mit_Young3_T2.raw
Mit_Young3_T2.mzML
1
3,718
576
131
44
Mouse
Orbitrap Exploris 240
HCD
Heart tissue
RPLC
null
No
PXD042298
Single_shot_BeforeSEC.raw
Single_shot_BeforeSEC.mzML
1
8,472
1,063
62
22
Mouse
Q Exactive HF
HCD
Brain
CZE
null
No
MSV000092097
T1D_TD_BC228-3_WT_M_Aragorn_02Apr21_21-02-01.raw
T1D_TD_BC228-3_WT_M_Aragorn_02Apr21_21-02-01.mzML
3
13,356
5,031
2,060
300
Mouse
Orbitrap Fusion Lumos
CID
Mouse pancreatic islet (pancrea beta cells)
RPLC
null
Yes
MSV000092097
T1D_TD_BC228-4_KO_M_1_Aragorn_02Apr21_21-02-01.raw
T1D_TD_BC228-4_KO_M_1_Aragorn_02Apr21_21-02-01.mzML
3
13,314
5,388
2,082
342
Mouse
Orbitrap Fusion Lumos
CID
Mouse pancreatic islet (pancrea beta cells)
RPLC
null
Yes
MSV000092097
T1D_TD_BC228-4_KO_M_2_Aragorn_02Apr21_21-02-01.raw
T1D_TD_BC228-4_KO_M_2_Aragorn_02Apr21_21-02-01.mzML
3
13,368
5,765
2,365
399
Mouse
Orbitrap Fusion Lumos
CID
Mouse pancreatic islet (pancrea beta cells)
RPLC
null
Yes
MSV000092097
T1D_TD_BC228-4_KO_M_3_Aragorn_02Apr21_21-02-01.raw
T1D_TD_BC228-4_KO_M_3_Aragorn_02Apr21_21-02-01.mzML
3
13,348
5,692
2,393
398
Mouse
Orbitrap Fusion Lumos
CID
Mouse pancreatic islet (pancrea beta cells)
RPLC
null
Yes
MSV000092097
T1D_TD_BC228-4_KO_M_4_Aragorn_02Apr21_21-02-01.raw
T1D_TD_BC228-4_KO_M_4_Aragorn_02Apr21_21-02-01.mzML
3
13,350
5,770
2,580
417
Mouse
Orbitrap Fusion Lumos
CID
Mouse pancreatic islet (pancrea beta cells)
RPLC
null
Yes
MSV000092097
T1D_TD_PE32-3_WT_M_Aragorn_02Apr21_21-02-01.raw
T1D_TD_PE32-3_WT_M_Aragorn_02Apr21_21-02-01.mzML
3
13,467
5,309
2,247
295
Mouse
Orbitrap Fusion Lumos
CID
Mouse pancreatic islet (pancrea beta cells)
RPLC
null
Yes
MSV000092097
T1D_TD_PE33-5_WT_F_Aragorn_02Apr21_21-02-01.raw
T1D_TD_PE33-5_WT_F_Aragorn_02Apr21_21-02-01.mzML
3
13,582
6,408
2,153
258
Mouse
Orbitrap Fusion Lumos
CID
Mouse pancreatic islet (pancrea beta cells)
RPLC
null
Yes
MSV000092097
T1D_TD_PE33-7_WT_F_Aragorn_02Apr21_21-02-01.raw
T1D_TD_PE33-7_WT_F_Aragorn_02Apr21_21-02-01.mzML
3
13,384
5,512
2,137
258
Mouse
Orbitrap Fusion Lumos
CID
Mouse pancreatic islet (pancrea beta cells)
RPLC
null
Yes
null
null
data01_Haima_mem_F1.mzML
null
null
null
null
null
null
null
null
null
null
null
null
null
null
data01_Haima_mem_F1.mzML
null
null
null
null
null
null
null
null
null
null
null
null
null
null
data01_Haima_mem_F1.mzML
null
null
null
null
null
null
null
null
null
null
null
null
null
null
data01_Haima_mem_F1.mzML
null
null
null
null
null
null
null
null
null
null
null
null
null
null
data01_Haima_mem_F1.mzML
null
null
null
null
null
null
null
null
null
null
null
null
null
null
data01_Haima_mem_F1.mzML
null
null
null
null
null
null
null
null
null
null
null
null
null
null
data01_Haima_mem_F1.mzML
null
null
null
null
null
null
null
null
null
null
null
null
null
null
data01_Haima_mem_F1.mzML
null
null
null
null
null
null
null
null
null
null
null
null
null
null
data01_Haima_mem_F1.mzML
null
null
null
null
null
null
null
null
null
null
null
null
null
null
data01_Haima_mem_F1.mzML
null
null
null
null
null
null
null
null
null
null
null
null
null
null
data01_Haima_mem_F1.mzML
null
null
null
null
null
null
null
null
null
null
null
null
null
null
data01_Haima_mem_F1.mzML
null
null
null
null
null
null
null
null
null
null
null
null
null
null
data01_Haima_mem_F1.mzML
null
null
null
null
null
null
null
null
null
null
null
null
null
null
data01_Haima_mem_F1.mzML
null
null
null
null
null
null
null
null
null
null
null
null
null
null
data01_Haima_mem_F1.mzML
null
null
null
null
null
null
null
null
null
null
null
null
null
null
data01_Haima_mem_F1.mzML
null
null
null
null
null
null
null
null
null
null
null
null
null
null
data01_Haima_mem_F1.mzML
null
null
null
null
null
null
null
null
null
null
null
null
End of preview.

TopRepo is a top-down spectral repository containing more than 12 million MS/MS spectra from 12 species. For each MS raw file in TopRepo, msconvert is used to convert the raw file to a centroided mzML file, and then TopFD is employed to deconvolute spectra in the centroided mzML file to one or several msalign files and proteoform feature files. The msalign files are searched against its corresponding proteome sequence database for spectral identification using TopPIC. The identification results are stored in TSV files.

Using mzML files, msalign files, feature files, and spectral identification (TSV) files generated from the data analysis pipeline, Python scripts in this repository are used to generate TSV files with comprehensive spectral information, annotated msalign files, and annotated mgf files.

Dataset Structure

The dataset consists of two TSV files for the species Mouse.

  1. Metadata Table toprepo_mouse_meta_table_v1.2.0.tsv Contains experiment-level metadata including:
  • dataset identifiers
  • species information
  • instrument metadata
  • dissociation methods
  • counts of spectra, proteins, and proteoforms
  1. Spectrum Table toprepo_mouse_spectrum_table_ms2_v1.2.0.tsv Contains spectrum-level MS/MS analytical data including:
  • scan identifiers
  • precursor ion information
  • fragmentation measurements
  • proteoform annotations
  • protein identifications
  • statistical confidence metrics
  1. Annotated .msalign file

Sources

Contact

For questions regarding this dataset, please contact the TopRepo team through: xwliu@tulane.edu kli7@tulane.edu

Copyright (c) 2025 - 2026, Tulane University.

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