Datasets:
Dataset Viewer
The dataset viewer is not available for this subset.
Cannot get the split names for the config 'default' of the dataset.
Exception: FileNotFoundError
Message: Couldn't find any data file at /src/services/worker/MedOtter/msd-spleen. Couldn't find 'MedOtter/msd-spleen' on the Hugging Face Hub either: FileNotFoundError: Unable to find 'hf://datasets/MedOtter/msd-spleen@6ba3d36fc2521cd079658f7787ccbb9f7d4185d7/train.jsonl' with any supported extension ['.csv', '.tsv', '.json', '.jsonl', '.ndjson', '.parquet', '.geoparquet', '.gpq', '.arrow', '.txt', '.conll', '.conllu', '.tar', '.xml', '.hdf5', '.h5', '.eval', '.lance', '.tsfile', '.blp', '.bmp', '.dib', '.bufr', '.cur', '.pcx', '.dcx', '.dds', '.ps', '.eps', '.fit', '.fits', '.fli', '.flc', '.ftc', '.ftu', '.gbr', '.gif', '.grib', '.png', '.apng', '.jp2', '.j2k', '.jpc', '.jpf', '.jpx', '.j2c', '.icns', '.ico', '.im', '.iim', '.tif', '.tiff', '.jfif', '.jpe', '.jpg', '.jpeg', '.mpg', '.mpeg', '.msp', '.pcd', '.pxr', '.pbm', '.pgm', '.ppm', '.pnm', '.psd', '.bw', '.rgb', '.rgba', '.sgi', '.ras', '.tga', '.icb', '.vda', '.vst', '.webp', '.wmf', '.emf', '.xbm', '.xpm', '.BLP', '.BMP', '.DIB', '.BUFR', '.CUR', '.PCX', '.DCX', '.DDS', '.PS', '.EPS', '.FIT', '.FITS', '.FLI', '.FLC', '.FTC', '.FTU', '.GBR', '.GIF', '.GRIB', '.PNG', '.APNG', '.JP2', '.J2K', '.JPC', '.JPF', '.JPX', '.J2C', '.ICNS', '.ICO', '.IM', '.IIM', '.TIF', '.TIFF', '.JFIF', '.JPE', '.JPG', '.JPEG', '.MPG', '.MPEG', '.MSP', '.PCD', '.PXR', '.PBM', '.PGM', '.PPM', '.PNM', '.PSD', '.BW', '.RGB', '.RGBA', '.SGI', '.RAS', '.TGA', '.ICB', '.VDA', '.VST', '.WEBP', '.WMF', '.EMF', '.XBM', '.XPM', '.aiff', '.au', '.avr', '.caf', '.flac', '.htk', '.svx', '.mat4', '.mat5', '.mpc2k', '.ogg', '.paf', '.pvf', '.raw', '.rf64', '.sd2', '.sds', '.ircam', '.voc', '.w64', '.wav', '.nist', '.wavex', '.wve', '.xi', '.mp3', '.opus', '.3gp', '.3g2', '.avi', '.asf', '.flv', '.mp4', '.mov', '.m4v', '.mkv', '.webm', '.f4v', '.wmv', '.wma', '.ogm', '.mxf', '.nut', '.AIFF', '.AU', '.AVR', '.CAF', '.FLAC', '.HTK', '.SVX', '.MAT4', '.MAT5', '.MPC2K', '.OGG', '.PAF', '.PVF', '.RAW', '.RF64', '.SD2', '.SDS', '.IRCAM', '.VOC', '.W64', '.WAV', '.NIST', '.WAVEX', '.WVE', '.XI', '.MP3', '.OPUS', '.3GP', '.3G2', '.AVI', '.ASF', '.FLV', '.MP4', '.MOV', '.M4V', '.MKV', '.WEBM', '.F4V', '.WMV', '.WMA', '.OGM', '.MXF', '.NUT', '.glb', '.ply', '.stl', '.GLB', '.PLY', '.STL', '.pdf', '.PDF', '.nii', '.NII', '.zip', '.idx', '.manifest', '.txn']
Traceback: Traceback (most recent call last):
File "/src/services/worker/src/worker/job_runners/config/split_names.py", line 66, in compute_split_names_from_streaming_response
for split in get_dataset_split_names(
~~~~~~~~~~~~~~~~~~~~~~~^
path=dataset,
^^^^^^^^^^^^^
config_name=config,
^^^^^^^^^^^^^^^^^^^
token=hf_token,
^^^^^^^^^^^^^^^
)
^
File "/usr/local/lib/python3.14/site-packages/datasets/inspect.py", line 340, in get_dataset_split_names
info = get_dataset_config_info(
path,
...<6 lines>...
**config_kwargs,
)
File "/usr/local/lib/python3.14/site-packages/datasets/inspect.py", line 268, in get_dataset_config_info
builder = load_dataset_builder(
path,
...<6 lines>...
**config_kwargs,
)
File "/usr/local/lib/python3.14/site-packages/datasets/load.py", line 1325, in load_dataset_builder
dataset_module = dataset_module_factory(
path,
...<5 lines>...
cache_dir=cache_dir,
)
File "/usr/local/lib/python3.14/site-packages/datasets/load.py", line 1213, in dataset_module_factory
raise FileNotFoundError(
...<2 lines>...
) from None
FileNotFoundError: Couldn't find any data file at /src/services/worker/MedOtter/msd-spleen. Couldn't find 'MedOtter/msd-spleen' on the Hugging Face Hub either: FileNotFoundError: Unable to find 'hf://datasets/MedOtter/msd-spleen@6ba3d36fc2521cd079658f7787ccbb9f7d4185d7/train.jsonl' with any supported extension ['.csv', '.tsv', '.json', '.jsonl', '.ndjson', '.parquet', '.geoparquet', '.gpq', '.arrow', '.txt', '.conll', '.conllu', '.tar', '.xml', '.hdf5', '.h5', '.eval', '.lance', '.tsfile', '.blp', '.bmp', '.dib', '.bufr', '.cur', '.pcx', '.dcx', '.dds', '.ps', '.eps', '.fit', '.fits', '.fli', '.flc', '.ftc', '.ftu', '.gbr', '.gif', '.grib', '.png', '.apng', '.jp2', '.j2k', '.jpc', '.jpf', '.jpx', '.j2c', '.icns', '.ico', '.im', '.iim', '.tif', '.tiff', '.jfif', '.jpe', '.jpg', '.jpeg', '.mpg', '.mpeg', '.msp', '.pcd', '.pxr', '.pbm', '.pgm', '.ppm', '.pnm', '.psd', '.bw', '.rgb', '.rgba', '.sgi', '.ras', '.tga', '.icb', '.vda', '.vst', '.webp', '.wmf', '.emf', '.xbm', '.xpm', '.BLP', '.BMP', '.DIB', '.BUFR', '.CUR', '.PCX', '.DCX', '.DDS', '.PS', '.EPS', '.FIT', '.FITS', '.FLI', '.FLC', '.FTC', '.FTU', '.GBR', '.GIF', '.GRIB', '.PNG', '.APNG', '.JP2', '.J2K', '.JPC', '.JPF', '.JPX', '.J2C', '.ICNS', '.ICO', '.IM', '.IIM', '.TIF', '.TIFF', '.JFIF', '.JPE', '.JPG', '.JPEG', '.MPG', '.MPEG', '.MSP', '.PCD', '.PXR', '.PBM', '.PGM', '.PPM', '.PNM', '.PSD', '.BW', '.RGB', '.RGBA', '.SGI', '.RAS', '.TGA', '.ICB', '.VDA', '.VST', '.WEBP', '.WMF', '.EMF', '.XBM', '.XPM', '.aiff', '.au', '.avr', '.caf', '.flac', '.htk', '.svx', '.mat4', '.mat5', '.mpc2k', '.ogg', '.paf', '.pvf', '.raw', '.rf64', '.sd2', '.sds', '.ircam', '.voc', '.w64', '.wav', '.nist', '.wavex', '.wve', '.xi', '.mp3', '.opus', '.3gp', '.3g2', '.avi', '.asf', '.flv', '.mp4', '.mov', '.m4v', '.mkv', '.webm', '.f4v', '.wmv', '.wma', '.ogm', '.mxf', '.nut', '.AIFF', '.AU', '.AVR', '.CAF', '.FLAC', '.HTK', '.SVX', '.MAT4', '.MAT5', '.MPC2K', '.OGG', '.PAF', '.PVF', '.RAW', '.RF64', '.SD2', '.SDS', '.IRCAM', '.VOC', '.W64', '.WAV', '.NIST', '.WAVEX', '.WVE', '.XI', '.MP3', '.OPUS', '.3GP', '.3G2', '.AVI', '.ASF', '.FLV', '.MP4', '.MOV', '.M4V', '.MKV', '.WEBM', '.F4V', '.WMV', '.WMA', '.OGM', '.MXF', '.NUT', '.glb', '.ply', '.stl', '.GLB', '.PLY', '.STL', '.pdf', '.PDF', '.nii', '.NII', '.zip', '.idx', '.manifest', '.txn']Need help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.
Medical Segmentation Decathlon: Spleen
Dataset Description
This is the Spleen dataset from the Medical Segmentation Decathlon (MSD) challenge. The dataset contains CT scans with segmentation annotations for spleen segmentation.
Dataset Details
- Modality: CT
- Task: Task09_Spleen
- Target: spleen
- Format: NIfTI (.nii.gz)
Dataset Structure
Each sample in the JSONL file contains:
{
"image": "path/to/image.nii.gz",
"mask": "path/to/mask.nii.gz",
"label": ["label1", "label2", ...],
"modality": "CT",
"dataset": "MSD_Spleen",
"official_split": "train",
"patient_id": "patient_id"
}
Data Organization
Task09_Spleen/
├── imagesTr/ # Training images
│ └── *.nii.gz
└── labelsTr/ # Training labels
└── *.nii.gz
Usage
Load Metadata
from datasets import load_dataset
# Load the dataset
ds = load_dataset("Angelou0516/msd-spleen")
# Access a sample
sample = ds['train'][0]
print(f"Image: {sample['image']}")
print(f"Mask: {sample['mask']}")
print(f"Labels: {sample['label']}")
print(f"Modality: {sample['modality']}")
Load Images
from huggingface_hub import snapshot_download
import nibabel as nib
import os
# Download the full dataset
local_path = snapshot_download(
repo_id="Angelou0516/msd-spleen",
repo_type="dataset"
)
# Load a sample
sample = ds['train'][0]
image = nib.load(os.path.join(local_path, sample['image']))
mask = nib.load(os.path.join(local_path, sample['mask']))
# Get numpy arrays
image_data = image.get_fdata()
mask_data = mask.get_fdata()
print(f"Image shape: {image_data.shape}")
print(f"Mask shape: {mask_data.shape}")
Citation
If you use this dataset, please cite the Medical Segmentation Decathlon paper:
@article{antonelli2022medical,
title={A large annotated medical image dataset for the development and evaluation of segmentation algorithms},
author={Antonelli, Michela and Reinke, Annika and Bakas, Spyridon and others},
journal={Nature Communications},
volume={13},
number={1},
pages={1--13},
year={2022},
publisher={Nature Publishing Group}
}
License
CC-BY-SA-4.0
Dataset Homepage
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