AxisMapper Medical AI Suite
Collection
16 SFT datasets for medical LLMs: ICD-10, DRG, PM-JAY, NER, radiology, and more. • 16 items • Updated
Datasets:
messages listlengths 3 3 |
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[
{
"role": "system",
"content": "You are a clinical documentation specialist. Summarize the clinical note into a structured SOAP format."
},
{
"role": "user",
"content": "A 24-year-old male patient was admitted to the emergency room due to injuries to the left hemithorax as well as a transfixing ... |
[
{
"role": "system",
"content": "You are a clinical documentation specialist. Summarize the clinical note into a structured SOAP format."
},
{
"role": "user",
"content": "A 48-year-old, previously healthy female patient visited the emergency department with initial presentation of intermittent ab... |
[
{
"role": "system",
"content": "You are a clinical documentation specialist. Summarize the clinical note into a structured SOAP format."
},
{
"role": "user",
"content": "A female patient aged 28 years presented in 2007 with a lesion arising from the deep soft tissue of the left foot, covered by ... |
[
{
"role": "system",
"content": "You are a clinical documentation specialist. Summarize the clinical note into a structured SOAP format."
},
{
"role": "user",
"content": "A 32-year-old Caucasian pregnant woman (G2, P1) presented at the antenatal department due to reduced fetal movements the day b... |
[
{
"role": "system",
"content": "You are a clinical documentation specialist. Summarize the clinical note into a structured SOAP format."
},
{
"role": "user",
"content": "A 64 year old Caucasian male presented to the Emergency Department with haematemesis and melaena for 3 days. He was a known sm... |
[
{
"role": "system",
"content": "You are a clinical documentation specialist. Summarize the clinical note into a structured SOAP format."
},
{
"role": "user",
"content": "A 45-year-old man was presented in our department with a large, painful swelling in the popliteal fossa in his left leg. There... |
[
{
"role": "system",
"content": "You are a clinical documentation specialist. Summarize the clinical note into a structured SOAP format."
},
{
"role": "user",
"content": "A 20-year-old male patient presented with a history of pain in the left hip for the past 6 months. The pain was insidious in o... |
[
{
"role": "system",
"content": "You are a clinical documentation specialist. Summarize the clinical note into a structured SOAP format."
},
{
"role": "user",
"content": "A forty-year-old male patient was referred to the Department of Conservative Dentistry and Endodontics with the complaint of b... |
[
{
"role": "system",
"content": "You are a clinical documentation specialist. Summarize the clinical note into a structured SOAP format."
},
{
"role": "user",
"content": "A 52-year-old otherwise healthy man presented to his primary care physician with complaints of bleeding per rectum for the pas... |
[
{
"role": "system",
"content": "You are a clinical documentation specialist. Summarize the clinical note into a structured SOAP format."
},
{
"role": "user",
"content": "A 51 year old man presented to the ED for the third time in 2 weeks with complaints of flank pain and hematuria. He had compla... |
[
{
"role": "system",
"content": "You are a clinical documentation specialist. Summarize the clinical note into a structured SOAP format."
},
{
"role": "user",
"content": "A 43-year-old Greek male builder admitted to the Accident and Emergency Department of the Hospital due to fall from a height o... |
[
{
"role": "system",
"content": "You are a clinical documentation specialist. Summarize the clinical note into a structured SOAP format."
},
{
"role": "user",
"content": "A 42-year-old male with chronic pancreatitis due to alcohol abuse presented with recurrent pain in the upper abdomen for the l... |
[
{
"role": "system",
"content": "You are a clinical documentation specialist. Summarize the clinical note into a structured SOAP format."
},
{
"role": "user",
"content": "We report of a 58-year-old woman, who did not suffer from any pre-existing medical conditions, with the only exception of bein... |
[
{
"role": "system",
"content": "You are a clinical documentation specialist. Summarize the clinical note into a structured SOAP format."
},
{
"role": "user",
"content": "Patient 1 was a 38 years-old male. In May 2010, this patient was diagnosed with glioma soon after an episode of seizures. MRI ... |
[
{
"role": "system",
"content": "You are a clinical documentation specialist. Summarize the clinical note into a structured SOAP format."
},
{
"role": "user",
"content": "A 60-year-old man presented with sudden severe right shoulder and flank pain and numbness of the right hand. The patient had a... |
[
{
"role": "system",
"content": "You are a clinical documentation specialist. Summarize the clinical note into a structured SOAP format."
},
{
"role": "user",
"content": "This is the case of a 53-year-old Japanese male with schizophrenia who had been hospitalized at Takano Hospital from the age o... |
[
{
"role": "system",
"content": "You are a clinical documentation specialist. Summarize the clinical note into a structured SOAP format."
},
{
"role": "user",
"content": "A 27-year-old male patient was referred to our pain clinic after having had orchidectomy for a left sided testicular cancer, 2... |
[
{
"role": "system",
"content": "You are a clinical documentation specialist. Summarize the clinical note into a structured SOAP format."
},
{
"role": "user",
"content": "A 68-year-old Japanese man with a history of distal partial gastrectomy for gastric cancer 10 years earlier was admitted for s... |
[
{
"role": "system",
"content": "You are a clinical documentation specialist. Summarize the clinical note into a structured SOAP format."
},
{
"role": "user",
"content": "A 47 year old lady presented to the emergency department with a four hour history of severe central chest pain radiating to th... |
[
{
"role": "system",
"content": "You are a clinical documentation specialist. Summarize the clinical note into a structured SOAP format."
},
{
"role": "user",
"content": "We describe the case of a 45-year-old Hispanic man who presented to the psychiatric emergency room on account of depressed moo... |
[
{
"role": "system",
"content": "You are a clinical documentation specialist. Summarize the clinical note into a structured SOAP format."
},
{
"role": "user",
"content": "A 20-year-old man with both upper limb disabilities admitted to our hospital for mandatory health screening before military se... |
[
{
"role": "system",
"content": "You are a clinical documentation specialist. Summarize the clinical note into a structured SOAP format."
},
{
"role": "user",
"content": "A 38-year-old man was admitted to the Division of Surgery in February 2006 because of persistent cough and haemoptysis. Bronch... |
[
{
"role": "system",
"content": "You are a clinical documentation specialist. Summarize the clinical note into a structured SOAP format."
},
{
"role": "user",
"content": "A 36-year-old male was referred to the Otolaryngology-Head Neck Surgery Department, due to a right sided chronic otitis media ... |
[
{
"role": "system",
"content": "You are a clinical documentation specialist. Summarize the clinical note into a structured SOAP format."
},
{
"role": "user",
"content": "The patient is a 76-year-old active male, community ambulator, with a medical history of coronary artery disease, Stage III ch... |
[
{
"role": "system",
"content": "You are a clinical documentation specialist. Summarize the clinical note into a structured SOAP format."
},
{
"role": "user",
"content": "A 64-year-old postmenopausal woman presented to the emergency department at 10 am in the morning with chest pain and shortness... |
[
{
"role": "system",
"content": "You are a clinical documentation specialist. Summarize the clinical note into a structured SOAP format."
},
{
"role": "user",
"content": "A 15-year-old male patient sought medical attention complaining of a one-week history of pain on the right side of the neck an... |
[
{
"role": "system",
"content": "You are a clinical documentation specialist. Summarize the clinical note into a structured SOAP format."
},
{
"role": "user",
"content": "A 31-year-old male was injured by baamboo and was admitted to Fuding People’s Hospital (Fuding, China) for wound debridement a... |
[
{
"role": "system",
"content": "You are a clinical documentation specialist. Summarize the clinical note into a structured SOAP format."
},
{
"role": "user",
"content": "The 77 year old, male patient diagnosed with esophageal cancer underwent esophagectomy and gastric conduit reconstruction in a... |
[
{
"role": "system",
"content": "You are a clinical documentation specialist. Summarize the clinical note into a structured SOAP format."
},
{
"role": "user",
"content": "A 48-year-old female was consulted for recurrence of massive pericardial effusion. Pericardial window through left thoracotomy... |
[
{
"role": "system",
"content": "You are a clinical documentation specialist. Summarize the clinical note into a structured SOAP format."
},
{
"role": "user",
"content": "A 25-year-old male was brought to the emergency department after being found at the side of the road. At presentation, the pat... |
[
{
"role": "system",
"content": "You are a clinical documentation specialist. Summarize the clinical note into a structured SOAP format."
},
{
"role": "user",
"content": "A British Caucasian female patient aged 12 years and 9 months presented to our institution with a right thoracic scoliosis, wh... |
[
{
"role": "system",
"content": "You are a clinical documentation specialist. Summarize the clinical note into a structured SOAP format."
},
{
"role": "user",
"content": "A 39-year old male presented with left sided pelvic pain for 1 year. He was evaluated elsewhere where MRI pelvis was suggestiv... |
End of preview. Expand in Data Studio
Clinical Note Summarizer (SOAP Format)
Part of the AxisMapper Medical AI Suite — 16 domain-specific SFT datasets for fine-tuning medical LLMs.
Built by AmareshHebbar | Studio Ilios / Humanova Minds
What this dataset does
Long clinical notes → structured SOAP summaries
Why download this
Automate clinical documentation. Reduce physician burnout by summarizing visit notes into Subjective / Objective / Assessment / Plan format.
Dataset stats
| Split | Rows |
|---|---|
| Train | 24,000 |
| Validation | 3,000 |
| Test | 3,000 |
| Total | 30,000 |
Data format
Every row is a messages list in chat format — compatible with Unsloth, TRL SFTTrainer, LLaMA-Factory, and any OpenAI-style fine-tuning pipeline:
{
"messages": [
{"role": "system", "content": "You are a ..."},
{"role": "user", "content": "DISCHARGE SUMMARY: 67M admitted with worsening dyspnea and bilateral leg oedema. PMH: CHF (EF 35%), HTN, CKD stage 3..."},
{"role": "assistant", "content": "S: 67M with known CHF presents with worsening dyspnea and bilateral oedema.
O: EF worsened to 28%. 3L diuresis achieved.
A: Acute decompensated heart failure (I50.9), CKD stage 3 (N18.3).
P: Furosemide 80mg OD, cardiology follow-up 2 weeks."}
]
}
Data source
AGBonnet/augmented-clinical-notes — 30k de-identified clinical notes → https://huggingface.co/datasets/AGBonnet/augmented-clinical-notes
All data is extracted from authoritative public sources. No LLM-generated or synthetic content.
Who should use this
EHR vendors, hospital IT teams, clinical AI researchers, medical documentation companies.
Quick start
from datasets import load_dataset
ds = load_dataset("AmareshHebbar/clinical-summarizer-sft")
print(ds["train"][0])
Fine-tuning example (Unsloth)
from unsloth import FastLanguageModel
from trl import SFTTrainer
from datasets import load_dataset
model, tokenizer = FastLanguageModel.from_pretrained(
model_name="unsloth/Qwen2.5-3B-Instruct",
max_seq_length=2048,
load_in_4bit=True,
)
dataset = load_dataset("AmareshHebbar/clinical-summarizer-sft", split="train")
trainer = SFTTrainer(
model=model,
tokenizer=tokenizer,
train_dataset=dataset,
dataset_text_field="messages",
max_seq_length=2048,
)
trainer.train()
Related datasets in this collection
| Dataset | Task | Rows |
|---|---|---|
| icd10-coder-sft | ICD-10-CM coding | 74.7k |
| symptom-diagnoser-sft | Symptom → diagnosis | 119k |
| clinical-summarizer-sft | SOAP summarization | 30k |
| discharge-qa-sft | Discharge summary QA | 30k |
| pmjay-classifier-sft | PM-JAY packages | 11.1k |
| radiology-coder-sft | Radiology coding | 25k |
| medical-ner-sft | Clinical NER | 16.7k |
| hindi-medical-sft | Hindi medical QA | 19.7k |
Citation
@misc{axiomapper2026,
author = {Hebbar, Amaresh},
title = {AxisMapper: Medical AI Fine-tuning Dataset Suite},
year = {2026},
publisher = {HuggingFace},
url = {https://huggingface.co/collections/AmareshHebbar/axiomapper-medical-ai-suite}
}
AxisMapper is an open-source project. Star the repo, open issues, and contribute at GitHub.
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