Image-Text-to-Text
Transformers
Safetensors
English
pathology
computational-pathology
digital-pathology
histopathology
whole-slide-image
vision-language-model
report-generation
synoptic-report
case-level
conch
qwen2.5
Eval Results (legacy)
Instructions to use AtlasAnalyticsLab/PathoSynVLM with libraries, inference providers, notebooks, and local apps. Follow these links to get started.
- Libraries
- Transformers
How to use AtlasAnalyticsLab/PathoSynVLM with Transformers:
# Use a pipeline as a high-level helper from transformers import pipeline pipe = pipeline("image-text-to-text", model="AtlasAnalyticsLab/PathoSynVLM")# Load model directly from transformers import AutoModel model = AutoModel.from_pretrained("AtlasAnalyticsLab/PathoSynVLM", device_map="auto") - Notebooks
- Google Colab
- Kaggle
- Local Apps Settings
- vLLM
How to use AtlasAnalyticsLab/PathoSynVLM with vLLM:
Install from pip and serve model
# Install vLLM from pip: pip install vllm # Start the vLLM server: vllm serve "AtlasAnalyticsLab/PathoSynVLM" # Call the server using curl (OpenAI-compatible API): curl -X POST "http://localhost:8000/v1/completions" \ -H "Content-Type: application/json" \ --data '{ "model": "AtlasAnalyticsLab/PathoSynVLM", "prompt": "Once upon a time,", "max_tokens": 512, "temperature": 0.5 }'Use Docker
docker model run hf.co/AtlasAnalyticsLab/PathoSynVLM
- SGLang
How to use AtlasAnalyticsLab/PathoSynVLM with SGLang:
Install from pip and serve model
# Install SGLang from pip: pip install sglang # Start the SGLang server: python3 -m sglang.launch_server \ --model-path "AtlasAnalyticsLab/PathoSynVLM" \ --host 0.0.0.0 \ --port 30000 # Call the server using curl (OpenAI-compatible API): curl -X POST "http://localhost:30000/v1/completions" \ -H "Content-Type: application/json" \ --data '{ "model": "AtlasAnalyticsLab/PathoSynVLM", "prompt": "Once upon a time,", "max_tokens": 512, "temperature": 0.5 }'Use Docker images
docker run --gpus all \ --shm-size 32g \ -p 30000:30000 \ -v ~/.cache/huggingface:/root/.cache/huggingface \ --env "HF_TOKEN=<secret>" \ --ipc=host \ lmsysorg/sglang:latest \ python3 -m sglang.launch_server \ --model-path "AtlasAnalyticsLab/PathoSynVLM" \ --host 0.0.0.0 \ --port 30000 # Call the server using curl (OpenAI-compatible API): curl -X POST "http://localhost:30000/v1/completions" \ -H "Content-Type: application/json" \ --data '{ "model": "AtlasAnalyticsLab/PathoSynVLM", "prompt": "Once upon a time,", "max_tokens": 512, "temperature": 0.5 }' - Docker Model Runner
How to use AtlasAnalyticsLab/PathoSynVLM with Docker Model Runner:
docker model run hf.co/AtlasAnalyticsLab/PathoSynVLM
File size: 819 Bytes
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"format_version": 1,
"checkpoint_step": 30400,
"base_llm": "Qwen/Qwen2.5-3B-Instruct",
"llm_kind": "merged",
"llm_path": "llm",
"vision_dim": 768,
"feature_key": "conch_v15",
"patch_level": "5x_512",
"use_wsi_markers": true,
"use_wsi_index_emb": true,
"prompt_style": "double",
"report_target_field": "conclusion",
"report_target_label": "",
"training_config": {
"llm": "Qwen/Qwen2.5-3B-Instruct",
"vision_dim": 768,
"feature_key": "conch_v15",
"patch_level": "5x_512",
"use_wsi_markers": true,
"prompt_style": "double",
"max_text_length": 384,
"max_vision_tokens": 4096,
"vision_token_dropout": 0.0,
"lora_r": 16,
"lora_alpha": 32,
"lora_dropout": 0.05,
"lora_target": "q_proj,k_proj,v_proj,o_proj",
"unfreeze_llm_base": true
}
}
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