| ******************************************************************* |
| * Genome-wide Complex Trait Analysis (GCTA) |
| * version v1.94.1 Linux |
| * Built at Nov 15 2022 21:14:25, by GCC 8.5 |
| * (C) 2010-present, Yang Lab, Westlake University |
| * Please report bugs to Jian Yang <jian.yang@westlake.edu.cn> |
| ******************************************************************* |
| Analysis started at 16:24:04 CST on Thu May 21 2026. |
| Hostname: user-H3C-UniServer-R5300-G6 |
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| Accepted options: |
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| Note: This is a multi-thread program. You could specify the number of threads by the |
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| Reading IDs of the GRM from [geno.grm.id]. |
| 598 IDs are read from [geno.grm.id]. |
| Reading the GRM from [geno.grm.bin]. |
| GRM for 598 individuals are included from [geno.grm.bin]. |
| Reading phenotypes from [phe_YN2012.txt]. |
| Non-missing phenotypes of 599 individuals are included from [phe_YN2012.txt]. |
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| 598 individuals are in common in these files. |
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| Performing REML analysis ... (Note: may take hours depending on sample size). |
| 598 observations, 1 fixed effect(s), and 2 variance component(s)(including residual variance). |
| Calculating prior values of variance components by EM-REML ... |
| Updated prior values: 329.275 333.961 |
| logL: -2108.5 |
| Running AI-REML algorithm ... |
| Iter. logL V(G) V(e) |
| 1 -2108.30 290.23847 339.47403 |
| 2 -2107.65 224.60734 348.87745 |
| 3 -2107.36 243.53651 344.86144 |
| 4 -2107.32 239.90985 345.95788 |
| 5 -2107.32 240.78010 345.72872 |
| 6 -2107.32 240.58059 345.78254 |
| 7 -2107.32 240.62678 345.77015 |
| 8 -2107.32 240.61611 345.77301 |
| Log-likelihood ratio converged. |
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| Calculating the logLikelihood for the reduced model ... |
| (variance component 1 is dropped from the model) |
| Calculating prior values of variance components by EM-REML ... |
| Updated prior values: 675.84729 |
| logL: -2246.71299 |
| Running AI-REML algorithm ... |
| Iter. logL V(e) |
| 1 -2246.71 675.84729 |
| Log-likelihood ratio converged. |
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| Summary result of REML analysis: |
| Source Variance SE |
| V(G) 240.616110 63.262537 |
| V(e) 345.773014 25.981646 |
| Vp 586.389124 56.477811 |
| V(G)/Vp 0.410335 0.073649 |
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| Sampling variance/covariance of the estimates of variance components: |
| 4.002149e+03 -7.437257e+02 |
| -7.437257e+02 6.750460e+02 |
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| Summary result of REML analysis has been saved in the file [herit_YN2012.hsq]. |
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| Analysis finished at 16:24:04 CST on Thu May 21 2026 |
| Overall computational time: 0.13 sec. |
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