*******************************************************************
* Genome-wide Complex Trait Analysis (GCTA)
* version v1.94.1 Linux
* Built at Nov 15 2022 21:14:25, by GCC 8.5
* (C) 2010-present, Yang Lab, Westlake University
* Please report bugs to Jian Yang <jian.yang@westlake.edu.cn>
*******************************************************************
Analysis started at 16:24:04 CST on Thu May 21 2026.
Hostname: user-H3C-UniServer-R5300-G6

Accepted options:
--reml
--pheno phe_YN2012.txt
--grm geno
--out herit_YN2012

Note: This is a multi-thread program. You could specify the number of threads by the --thread-num option to speed up the computation if there are multiple processors in your machine.

Reading IDs of the GRM from [geno.grm.id].
598 IDs are read from [geno.grm.id].
Reading the GRM from [geno.grm.bin].
GRM for 598 individuals are included from [geno.grm.bin].
Reading phenotypes from [phe_YN2012.txt].
Non-missing phenotypes of 599 individuals are included from [phe_YN2012.txt].

598 individuals are in common in these files.

Performing  REML analysis ... (Note: may take hours depending on sample size).
598 observations, 1 fixed effect(s), and 2 variance component(s)(including residual variance).
Calculating prior values of variance components by EM-REML ...
Updated prior values: 329.275 333.961
logL: -2108.5
Running AI-REML algorithm ...
Iter.	logL	V(G)	V(e)	
1	-2108.30	290.23847	339.47403	
2	-2107.65	224.60734	348.87745	
3	-2107.36	243.53651	344.86144	
4	-2107.32	239.90985	345.95788	
5	-2107.32	240.78010	345.72872	
6	-2107.32	240.58059	345.78254	
7	-2107.32	240.62678	345.77015	
8	-2107.32	240.61611	345.77301	
Log-likelihood ratio converged.

Calculating the logLikelihood for the reduced model ...
(variance component 1 is dropped from the model)
Calculating prior values of variance components by EM-REML ...
Updated prior values: 675.84729
logL: -2246.71299
Running AI-REML algorithm ...
Iter.	logL	V(e)	
1	-2246.71	675.84729	
Log-likelihood ratio converged.

Summary result of REML analysis:
Source	Variance	SE
V(G)	240.616110	63.262537
V(e)	345.773014	25.981646
Vp	586.389124	56.477811
V(G)/Vp	0.410335	0.073649

Sampling variance/covariance of the estimates of variance components:
4.002149e+03	-7.437257e+02	
-7.437257e+02	6.750460e+02	

Summary result of REML analysis has been saved in the file [herit_YN2012.hsq].

Analysis finished at 16:24:04 CST on Thu May 21 2026
Overall computational time: 0.13 sec.