| ******************************************************************* |
| * Genome-wide Complex Trait Analysis (GCTA) |
| * version v1.94.1 Linux |
| * Built at Nov 15 2022 21:14:25, by GCC 8.5 |
| * (C) 2010-present, Yang Lab, Westlake University |
| * Please report bugs to Jian Yang <jian.yang@westlake.edu.cn> |
| ******************************************************************* |
| Analysis started at 16:24:03 CST on Thu May 21 2026. |
| Hostname: user-H3C-UniServer-R5300-G6 |
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| Accepted options: |
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| Note: This is a multi-thread program. You could specify the number of threads by the |
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| Reading IDs of the GRM from [geno.grm.id]. |
| 598 IDs are read from [geno.grm.id]. |
| Reading the GRM from [geno.grm.bin]. |
| GRM for 598 individuals are included from [geno.grm.bin]. |
| Reading phenotypes from [phe_SC2011.txt]. |
| Non-missing phenotypes of 599 individuals are included from [phe_SC2011.txt]. |
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| 598 individuals are in common in these files. |
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| Performing REML analysis ... (Note: may take hours depending on sample size). |
| 598 observations, 1 fixed effect(s), and 2 variance component(s)(including residual variance). |
| Calculating prior values of variance components by EM-REML ... |
| Updated prior values: 285.939 271.551 |
| logL: -2069.35 |
| Running AI-REML algorithm ... |
| Iter. logL V(G) V(e) |
| 1 -2068.64 335.53178 260.64757 |
| 2 -2066.64 457.42443 237.49419 |
| 3 -2064.80 459.73601 238.20787 |
| 4 -2064.79 461.31634 238.70356 |
| 5 -2064.79 464.72364 239.79031 |
| 6 -2064.78 464.66171 239.81286 |
| 7 -2064.78 464.66864 239.81144 |
| Log-likelihood ratio converged. |
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| Calculating the logLikelihood for the reduced model ... |
| (variance component 1 is dropped from the model) |
| Calculating prior values of variance components by EM-REML ... |
| Updated prior values: 544.63365 |
| logL: -2182.28063 |
| Running AI-REML algorithm ... |
| Iter. logL V(e) |
| 1 -2182.28 544.63365 |
| Log-likelihood ratio converged. |
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| Summary result of REML analysis: |
| Source Variance SE |
| V(G) 464.668643 76.736714 |
| V(e) 239.811436 20.270099 |
| Vp 704.480079 70.161951 |
| V(G)/Vp 0.659591 0.048558 |
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| Sampling variance/covariance of the estimates of variance components: |
| 5.888523e+03 -6.883504e+02 |
| -6.883504e+02 4.108769e+02 |
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| Summary result of REML analysis has been saved in the file [herit_SC2011.hsq]. |
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| Analysis finished at 16:24:04 CST on Thu May 21 2026 |
| Overall computational time: 0.12 sec. |
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