******************************************************************* * Genome-wide Complex Trait Analysis (GCTA) * version v1.94.1 Linux * Built at Nov 15 2022 21:14:25, by GCC 8.5 * (C) 2010-present, Yang Lab, Westlake University * Please report bugs to Jian Yang ******************************************************************* Analysis started at 16:24:03 CST on Thu May 21 2026. Hostname: user-H3C-UniServer-R5300-G6 Accepted options: --reml --pheno phe_SC2011.txt --grm geno --out herit_SC2011 Note: This is a multi-thread program. You could specify the number of threads by the --thread-num option to speed up the computation if there are multiple processors in your machine. Reading IDs of the GRM from [geno.grm.id]. 598 IDs are read from [geno.grm.id]. Reading the GRM from [geno.grm.bin]. GRM for 598 individuals are included from [geno.grm.bin]. Reading phenotypes from [phe_SC2011.txt]. Non-missing phenotypes of 599 individuals are included from [phe_SC2011.txt]. 598 individuals are in common in these files. Performing REML analysis ... (Note: may take hours depending on sample size). 598 observations, 1 fixed effect(s), and 2 variance component(s)(including residual variance). Calculating prior values of variance components by EM-REML ... Updated prior values: 285.939 271.551 logL: -2069.35 Running AI-REML algorithm ... Iter. logL V(G) V(e) 1 -2068.64 335.53178 260.64757 2 -2066.64 457.42443 237.49419 3 -2064.80 459.73601 238.20787 4 -2064.79 461.31634 238.70356 5 -2064.79 464.72364 239.79031 6 -2064.78 464.66171 239.81286 7 -2064.78 464.66864 239.81144 Log-likelihood ratio converged. Calculating the logLikelihood for the reduced model ... (variance component 1 is dropped from the model) Calculating prior values of variance components by EM-REML ... Updated prior values: 544.63365 logL: -2182.28063 Running AI-REML algorithm ... Iter. logL V(e) 1 -2182.28 544.63365 Log-likelihood ratio converged. Summary result of REML analysis: Source Variance SE V(G) 464.668643 76.736714 V(e) 239.811436 20.270099 Vp 704.480079 70.161951 V(G)/Vp 0.659591 0.048558 Sampling variance/covariance of the estimates of variance components: 5.888523e+03 -6.883504e+02 -6.883504e+02 4.108769e+02 Summary result of REML analysis has been saved in the file [herit_SC2011.hsq]. Analysis finished at 16:24:04 CST on Thu May 21 2026 Overall computational time: 0.12 sec.