| ******************************************************************* |
| * Genome-wide Complex Trait Analysis (GCTA) |
| * version v1.94.1 Linux |
| * Built at Nov 15 2022 21:14:25, by GCC 8.5 |
| * (C) 2010-present, Yang Lab, Westlake University |
| * Please report bugs to Jian Yang <jian.yang@westlake.edu.cn> |
| ******************************************************************* |
| Analysis started at 16:24:03 CST on Thu May 21 2026. |
| Hostname: user-H3C-UniServer-R5300-G6 |
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| Accepted options: |
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| Note: This is a multi-thread program. You could specify the number of threads by the |
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| Reading IDs of the GRM from [geno.grm.id]. |
| 598 IDs are read from [geno.grm.id]. |
| Reading the GRM from [geno.grm.bin]. |
| GRM for 598 individuals are included from [geno.grm.bin]. |
| Reading phenotypes from [phe_HB2012.txt]. |
| Non-missing phenotypes of 599 individuals are included from [phe_HB2012.txt]. |
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| 598 individuals are in common in these files. |
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| Performing REML analysis ... (Note: may take hours depending on sample size). |
| 598 observations, 1 fixed effect(s), and 2 variance component(s)(including residual variance). |
| Calculating prior values of variance components by EM-REML ... |
| Updated prior values: 337.901 275.745 |
| logL: -2062.34 |
| Running AI-REML algorithm ... |
| Iter. logL V(G) V(e) |
| 1 -2053.91 367.78509 260.23035 |
| 2 -2052.66 386.26746 251.12649 |
| 3 -2052.18 397.60935 245.57755 |
| 4 -2051.99 419.58693 234.60054 |
| 5 -2051.86 414.68640 235.95943 |
| 6 -2051.85 415.51999 235.79012 |
| 7 -2051.85 415.39260 235.81726 |
| 8 -2051.85 415.41241 235.81307 |
| Log-likelihood ratio converged. |
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| Calculating the logLikelihood for the reduced model ... |
| (variance component 1 is dropped from the model) |
| Calculating prior values of variance components by EM-REML ... |
| Updated prior values: 682.26135 |
| logL: -2249.53251 |
| Running AI-REML algorithm ... |
| Iter. logL V(e) |
| 1 -2249.53 682.26135 |
| Log-likelihood ratio converged. |
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| Summary result of REML analysis: |
| Source Variance SE |
| V(G) 415.412408 69.555189 |
| V(e) 235.813071 19.425277 |
| Vp 651.225478 63.775790 |
| V(G)/Vp 0.637893 0.049830 |
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| Sampling variance/covariance of the estimates of variance components: |
| 4.837924e+03 -5.739571e+02 |
| -5.739571e+02 3.773414e+02 |
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| Summary result of REML analysis has been saved in the file [herit_HB2012.hsq]. |
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| Analysis finished at 16:24:03 CST on Thu May 21 2026 |
| Overall computational time: 0.14 sec. |
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