******************************************************************* * Genome-wide Complex Trait Analysis (GCTA) * version v1.94.1 Linux * Built at Nov 15 2022 21:14:25, by GCC 8.5 * (C) 2010-present, Yang Lab, Westlake University * Please report bugs to Jian Yang ******************************************************************* Analysis started at 16:24:03 CST on Thu May 21 2026. Hostname: user-H3C-UniServer-R5300-G6 Accepted options: --reml --pheno phe_HB2012.txt --grm geno --out herit_HB2012 Note: This is a multi-thread program. You could specify the number of threads by the --thread-num option to speed up the computation if there are multiple processors in your machine. Reading IDs of the GRM from [geno.grm.id]. 598 IDs are read from [geno.grm.id]. Reading the GRM from [geno.grm.bin]. GRM for 598 individuals are included from [geno.grm.bin]. Reading phenotypes from [phe_HB2012.txt]. Non-missing phenotypes of 599 individuals are included from [phe_HB2012.txt]. 598 individuals are in common in these files. Performing REML analysis ... (Note: may take hours depending on sample size). 598 observations, 1 fixed effect(s), and 2 variance component(s)(including residual variance). Calculating prior values of variance components by EM-REML ... Updated prior values: 337.901 275.745 logL: -2062.34 Running AI-REML algorithm ... Iter. logL V(G) V(e) 1 -2053.91 367.78509 260.23035 2 -2052.66 386.26746 251.12649 3 -2052.18 397.60935 245.57755 4 -2051.99 419.58693 234.60054 5 -2051.86 414.68640 235.95943 6 -2051.85 415.51999 235.79012 7 -2051.85 415.39260 235.81726 8 -2051.85 415.41241 235.81307 Log-likelihood ratio converged. Calculating the logLikelihood for the reduced model ... (variance component 1 is dropped from the model) Calculating prior values of variance components by EM-REML ... Updated prior values: 682.26135 logL: -2249.53251 Running AI-REML algorithm ... Iter. logL V(e) 1 -2249.53 682.26135 Log-likelihood ratio converged. Summary result of REML analysis: Source Variance SE V(G) 415.412408 69.555189 V(e) 235.813071 19.425277 Vp 651.225478 63.775790 V(G)/Vp 0.637893 0.049830 Sampling variance/covariance of the estimates of variance components: 4.837924e+03 -5.739571e+02 -5.739571e+02 3.773414e+02 Summary result of REML analysis has been saved in the file [herit_HB2012.hsq]. Analysis finished at 16:24:03 CST on Thu May 21 2026 Overall computational time: 0.14 sec.