Patent Number: 
Section: claims

1. A plasma system for modifying a surface of a microscopy sample immersed in a plasma, by energetic ions extracted from the plasma in the energy range 50 eV to 1000 eV, comprising:a microscopy sample holder for holding a microscopy sample in place in a desired orientation;a receptacle holder for receiving the sample holder; andan RF antenna;the microscopy sample holder, the receptacle holder, and the RF antenna all being in electrical contact and at the same electrical potential;wherein all surfaces on the microscopy holder and the receptacle holder that are exposed to the incident energetic ions, and which have a direct line of sight to the microscopy sample, comprise a low sputter yield material, in order to minimize the amount of ion sputtered material deposited onto the microscopy sample, the microsopy holder and receptacle holder having a combined geometry that prevents any direct line of sight view from any point on the antenna or portion of the receptacle holder or sample holder that does not comprise a low sputter yield material, in order to prevent any ion sputtered material from high yield sputter surfaces exposed to the incident energetic ions from being deposited on the microscopy sample;wherein said microscopy sample is held in a perpendicular orientation relative to the RF antenna, and the portion of the sample farthest from the antenna and closest to the plasma has a very small radius of curvature, such that any electrical bias on the sample from external or self-biasing of the RF antenna causes an extremely high electrical field at the small radius of curvature. 2. The plasma system as recited in claim 1, wherein said low sputter yield material comprises carbon. 3. The plasma system as recited in claim 2, wherein said low sputter yield material comprises graphite. 4. The plasma system as recited in claim 2, wherein said low sputter yield material comprises a carbon coating. 5. The plasma system as recited in claim 2, wherein said low sputter yield material comprises a carbon paint. 6. The plasma system as recited in claim 1, wherein said microscopy sample is actively cooled. 7. The plasma system as recited in claim 1, wherein said sample holder is disposed on said antenna. 8. The plasma system as recited in claim 7, wherein said microscopy sample is actively cooled by cooling said antenna. 9. The plasma system as recited in claim 1, wherein direct line-of-sight contact between said antenna and said microscopy sample is avoided by arranging said system so that a surface of said receptacle, on which said sample holder is disposed, is at a different level than a level of an adapter plate on which said antenna is disposed. 10. The plasma system as recited in claim 9, wherein said receptacle surface is raised relative to said adapter plate. 11. The plasma system as recited in claim 1, wherein said microscopy sample is disposed substantially parallel to ion flow from the plasma generated by the plasma system, so that electric field lines affected by geometry of the sample deflect the ions so that their incidence on the sample surface to be treated is non-normal and non-parallel. 12. The plasma system as recited in claim 1, wherein the antenna is negatively self-biased, and this self-biasing functions to bias the sample negatively. 13. The plasma system as recited in claim 1, and further comprising a plate that is attached to the RF antenna such that the receptacle holder holds the receptacle holder in an inverted or perpendicular position, relative to gravity, and is in electrical contact with the microscopy sample, receptacle holder, microscopy sample holder, and microscopy sample. 14. The plasma system as recited in claim 1, wherein the geometry of the structure comprising the microscopy sample holder, receptacle holder, and RF antenna raises plane surfaces of clamping jaws of the microscopy sample holder that are parallel to the RF antenna, sufficiently that there is no line of sight trajectory from any sputtered material from any point on the RF antenna to any point on the sample. 15. The plasma system as recited in claim 14, wherein the plane surfaces of the clamping jaws of the microscopy sample holder are co-planar, and are perpendicular to an initial trajectory of the ions from the plasma in order to minimize sputtering due to normal incidence of the sputtering angle at distances far from the sample. 16. The plasma system as recited in claim 14, wherein the plane surfaces of the clamping jaws of the microscopy sample holder comprise a low sputter yield material. 17. The plasma system as recited in claim 1, wherein the total removal by energetic ion sputtering of material from the surfaces of the microscopy sample is controlled by controlling a combination of applied voltage levels, the ion gas species or mixture of gas species used for ion sputtering or reactive ion sputtering, and the total time the ions are striking the sample.