Patent Number: 
Section: claims

1. A scanning microscope system comprising:an optical microscope observation unit that irradiates a sample with excitation light, and forms an optical image from fluorescence emitted from the sample;a scanning map creator that creates a scanning map indicating a scanning region in which a substance to be scanned exists in the sample, based on a brightness of pixels of the optical image formed by the optical microscope observation unit; anda flying spot scanning observation unit that scans only the scanning region of the sample with a laser beam, and forms a scanning image based on fluorescence emitted from the sample, wherein the scanning region is determined based on the scanning map created by the scanning map creator. 2. The scanning microscope system according to claim 1, wherein the scanning region has a size of an image acquired by at least one of the optical microscope observation unit and the flying spot scanning observation unit. 3. The scanning microscope system according to claim 1, wherein the optical microscope observation unit includes a white light source emitting the excitation light. 4. The scanning microscope system according to claim 3, wherein the white light source is a halogen lamp. 5. The scanning microscope system according to claim 3, wherein the white light source is a xenon lamp. 6. The scanning microscope system according to claim 1, wherein the optical microscope observation unit irradiates the sample with a plurality of beams of excitation light, and acquires the optical image corresponding to each beam from fluorescence emitted from the sample, andthe scanning map creator creates link information between the scanning region in which the substance to be scanned exists and at least one beam of the excitation light. 7. The scanning microscope system according to claim 6, wherein the plurality of beams of excitation light each have a different wavelength. 8. A scanning microscope system comprising:an optical microscope observation unit that irradiates a sample with excitation light, and forms an optical image from fluorescence emitted from the sample;a scanning map creator that creates a scanning map indicating a scanning region in which a substance to be scanned exists in the sample, based on a brightness of pixels of the optical image formed by the optical microscope observation unit; anda flying spot scanning observation unit that scans the scanning region of the sample with a laser beam, and forms a scanning image based on fluorescence emitted from the sample, wherein the scanning region has a number of pixels with brightness higher than a threshold, the number being larger than a predetermined number. 9. A scanning microscope system comprising:an optical microscope observation unit that irradiates a sample with excitation light, and forms an optical image from fluorescence emitted from the sample;a scanning map creator that creates a scanning map indicating a scanning region in which a substance to be scanned exists in the sample, based on a brightness of pixels of the optical image formed by the optical microscope observation unit; anda flying spot scanning observation unit that scans the scanning region of the sample with a laser beam, and forms a scanning image based on fluorescence emitted from the sample;wherein the optical microscope observation unit includes a spinning disk inserted into a confocal position on an optical path for observation of the sample, and acquires the optical image by a confocal method, and wherein the spinning disk includes an optical transmission portion. 10. The scanning microscope system according to claim 9, wherein the optical transmission portion includes a plurality of pinholes. 11. The scanning microscope system according to claim 9, wherein the optical transmission portion includes a plurality of slits. 12. The scanning microscope system according to claim 9, wherein the optical image is a three-dimensional image formed by laminating a plurality of confocal images formed by moving a focus point in a depth direction of the sample. 13. The scanning microscope system according to claim 12, wherein the scanning region is determined based on a brightness of pixels of the three-dimensional image. 14. The scanning microscope system according to claim 13, wherein the optical image is a two-dimensional brightness image including pixels with a highest brightness among pixel groups in the confocal images.