Longformer for SciCo

This model is the unified model discussed in the paper SciCo: Hierarchical Cross-Document Coreference for Scientific Concepts (AKBC 2021) that formulates the task of hierarchical cross-document coreference resolution (H-CDCR) as a multiclass problem. The model takes as input two mentions m1 and m2 with their corresponding context and outputs 4 scores:

  • 0: not related
  • 1: m1 and m2 corefer
  • 2: m1 is a parent of m2
  • 3: m1 is a child of m2.

We provide the following code as an example to set the global attention on the special tokens: <s>, <m> and </m>.

from transformers import AutoTokenizer, AutoModelForSequenceClassification
import torch

tokenizer = AutoTokenizer.from_pretrained('allenai/longformer-scico')
model = AutoModelForSequenceClassification.from_pretrained('allenai/longformer-scico')

start_token = tokenizer.convert_tokens_to_ids("<m>")
end_token = tokenizer.convert_tokens_to_ids("</m>")

def get_global_attention(input_ids):
    global_attention_mask = torch.zeros(input_ids.shape)
    global_attention_mask[:, 0] = 1  # global attention to the CLS token
    start = torch.nonzero(input_ids == start_token) # global attention to the <m> token
    end = torch.nonzero(input_ids == end_token) # global attention to the </m> token
    globs = torch.cat((start, end))
    value = torch.ones(globs.shape[0])
    global_attention_mask.index_put_(tuple(globs.t()), value)
    return global_attention_mask
m1 = "In this paper we present the results of an experiment in <m> automatic concept and definition extraction </m> from written sources of law using relatively simple natural methods."
m2 = "This task is important since many natural language processing (NLP) problems, such as <m> information extraction </m>, summarization and dialogue."

inputs = m1 + " </s></s> " + m2  

tokens = tokenizer(inputs, return_tensors='pt')
global_attention_mask = get_global_attention(tokens['input_ids'])

with torch.no_grad():
    output = model(tokens['input_ids'], tokens['attention_mask'], global_attention_mask)
scores = torch.softmax(output.logits, dim=-1)
# tensor([[0.0818, 0.0023, 0.0019, 0.9139]]) -- m1 is a child of m2

Note: There is a slight difference between this model and the original model presented in the paper. The original model includes a single linear layer on top of the <s> token (equivalent to [CLS]) while this model includes a two-layers MLP to be in line with LongformerForSequenceClassification. The original repository can be found here.


    title={SciCo: Hierarchical Cross-Document Coreference for Scientific Concepts},
    author={Arie Cattan and Sophie Johnson and Daniel S Weld and Ido Dagan and Iz Beltagy and Doug Downey and Tom Hope},
    booktitle={3rd Conference on Automated Knowledge Base Construction},
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