songlab
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gpn-brassicales

Fill-Mask Transformers PyTorch ConvNet dna language-model variant-effect-prediction biology genomics Inference Endpoints

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GPN trained on Arabidopsis thaliana and 7 other Brassicales

See https://github.com/songlab-cal/gpn for more details.

Some hparams:

repeat_weight: 0.1
lr: 120k at 1e-3 + 30k cosine decay

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GPN

https://www.biorxiv.org/content/10.1101/2022.08.22.504706v3 • 3 items • Updated Oct 19, 2023