Hugging Face's logo

pruas
/
BENT-PubMedBERT-NER-Bioprocess

Token Classification
Transformers
PyTorch
English
bert
Inference Endpoints
Model card Files Community
1

Named Entity Recognition (NER) model to recognize biological process entities (as defined by Gene Ontology-Biological Process sub-ontology).

Please cite our work:

@article{NILNKER2022,
  title = {NILINKER: Attention-based approach to NIL Entity Linking},
  journal = {Journal of Biomedical Informatics},
  volume = {132},
  pages = {104137},
  year = {2022},
  issn = {1532-0464},
  doi = {https://doi.org/10.1016/j.jbi.2022.104137},
  url = {https://www.sciencedirect.com/science/article/pii/S1532046422001526},
  author = {Pedro Ruas and Francisco M. Couto},
}

PubMedBERT fine-tuned on the following dataset:

  • CRAFT: entity type "GO-BP"
Downloads last month
23
Inference Examples
Token Classification
This model does not have enough activity to be deployed to Inference API (serverless) yet. Increase its social visibility and check back later, or deploy to Inference Endpoints (dedicated) instead.