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Fine-tuned model to predict highly-catalytic protein sequences.

Model Details

Fine-tuned from original ZymCTRL model in https://huggingface.co/AI4PD/ZymCTRL.

Model Description

Original LLM model has been fine-tuned using protein sequences of highly catalytic Rubisco proteins (EC 4.1.1.39). Rubisco proteins are of high importance as they are involved in the the carbon fixation process by which atmospheric carbon dioxide is converted by plants and other photosynthetic organisms to energy-rich molecules such as glucose. These proteins are known to be relatively inefficient, or in other words, have low-catalytic activity. This fine-tuned model allows the generation of novel Rubisco sequences with higher catalytic activity which can be used for metabolic engineering and carbon-absorption processes.

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Carbon emissions can be estimated using the Machine Learning Impact calculator presented in Lacoste et al. (2019).

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