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kamaludeen
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fututech-colorectal-cancer

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train · 170 rows

s__Faecalibacterium_prausnitzii float64 -1 11.8	s__Streptococcus_salivarius float64 -1.23 10.6	s__Anaerostipes_hadrus float64 -1.08 13.3	s__Bacteroides_stercoris float64 -1.97 10.1	s__Collinsella_aerofaciens float64 -1.67 12.3	s__Bifidobacterium_longum float64 -1.34 12.6	s__Bacteroides_plebeius float64 -2.04 8.01	s__Bacteroides_vulgatus float64 -0.95 13.8	s__Dorea_longicatena float64 -1.67 12.4	s__Eubacterium_sp_CAG_251 float64 -1.97 11.2	s__Fusicatenibacter_saccharivorans float64 -1.1 11.7	s__Coprococcus_comes float64 -1.7 10.9	s__Ruminococcus_torques float64 -1.86 11.5	s__Eubacterium_hallii float64 -0.68 11.7	s__Holdemanella_biformis float64 -1.97 10.2	s__Bacteroides_uniformis float64 -1.67 11.2	s__Blautia_wexlerae float64 1 13.2	s__Gemmiger_formicilis float64 -1.42 10.1	s__Dorea_formicigenerans float64 -1.86 9.87	s__Streptococcus_parasanguinis float64 -1.71 9.99	s__Coprococcus_eutactus float64 -2.37 11.2	s__Ruminococcus_lactaris float64 -1.97 10.4	s__Coprococcus_catus float64 -1.81 9.89	s__Roseburia_intestinalis float64 -1.81 11.2	s__Roseburia_inulinivorans float64 -1.42 10.3	s__Phascolarctobacterium_succinatutens float64 -2.37 10.2	s__Eubacterium_rectale float64 -1.56 12	s__Blautia_obeum float64 -1.41 10.8	s__Agathobaculum_butyriciproducens float64 -1.86 11.4	s__Bacteroides_xylanisolvens float64 -1.69 9.1	s__Bacteroides_ovatus float64 -1.86 9.87	s__Bacteroides_thetaiotaomicron float64 -1.86 10.8	s__Streptococcus_thermophilus float64 -2.04 10.9	s__Eubacterium_ramulus float64 -1.86 10.9	s__Bifidobacterium_adolescentis float64 -1.9 12.7	s__Eubacterium_sp_CAG_274 float64 -2.04 11	s__Lactococcus_lactis float64 -2.04 7.46	s__Eubacterium_ventriosum float64 -1.97 9.99	s__Flavonifractor_plautii float64 -1.97 9.33	s__Lactobacillus_rhamnosus float64 -2.04 8.21	s__Gemella_sanguinis float64 -1.92 6.94	s__Streptococcus_infantis float64 -2.37 6.01	s__Lactobacillus_delbrueckii float64 -1.92 10.4	s__Hafnia_paralvei float64 -2.37 0	s__Lactobacillus_curvatus float64 -2.37 5.69	s__Streptococcus_mitis float64 -1.9 7.65	s__Rothia_mucilaginosa float64 -1.92 7.3	s__Oscillibacter_sp_57_20 float64 -1.97 9.43	s__Roseburia_hominis float64 -1.7 9.92	s__Haemophilus_parainfluenzae float64 -2.37 8.4	s__Roseburia_sp_CAG_471 float64 -1.9 9.96	s__Actinomyces_odontolyticus float64 -1.86 6.57	s__Alistipes_finegoldii float64 -1.52 11.3	s__Alistipes_putredinis float64 -1.67 11.2	s__Streptococcus_australis float64 -2.37 8.66	s__Streptococcus_sanguinis float64 -2.37 7.71	s__Veillonella_atypica float64 -1.92 7.63	s__Ruminococcus_bromii float64 -1.49 12.5	s__Haemophilus_sp_HMSC71H05 float64 -2.37 6.74	s__Firmicutes_bacterium_CAG_83 float64 -1.67 10.6	s__Veillonella_dispar float64 -1.76 8.08	s__Veillonella_parvula float64 -1.92 8.94	s__Enterococcus_faecium float64 -1.97 9.89	s__Eubacterium_eligens float64 -1.76 10.7	s__Actinomyces_sp_S6_Spd3 float64 -2.37 5.31	s__Gemella_haemolysans float64 -2.37 6.14	s__Allisonella_histaminiformans float64 -2.04 5.84	s__Lactobacillus_fermentum float64 -2.04 11.2	s__Leuconostoc_mesenteroides float64 -2.04 6.46	s__Holdemania_filiformis float64 -1.97 8.71	s__Rothia_dentocariosa float64 -2.37 6.3	s__Veillonella_infantium float64 -2.37 6.45	s__Streptococcus_mutans float64 -2.37 8.42	s__Streptococcus_oralis float64 -1.92 7.49	s__Alistipes_onderdonkii float64 -2.37 8.02	s__Collinsella_intestinalis float64 -2.04 12.1	s__Enorma_massiliensis float64 -2.04 9.6	s__Ruminococcus_gnavus float64 -1.76 12.4	s__Streptococcus_anginosus_group float64 -2.37 8.11	s__Gemella_morbillorum float64 -2.37 7.38	s__Actinomyces_sp_HPA0247 float64 -2.04 8.46	s__Actinomyces_sp_oral_taxon_181 float64 -1.81 5.62	s__Actinomyces_sp_HMSC035G02 float64 -2.37 5.6	s__Streptococcus_sp_F0442 float64 -1.92 5.5	s__Streptococcus_cristatus float64 -2.37 6.61	s__Bacteroides_eggerthii float64 -1.9 10.1	s__Roseburia_faecis float64 -1.42 11.8	s__Actinobaculum_sp_oral_taxon_183 float64 -2.37 3.93	s__Veillonella_tobetsuensis float64 -2.37 4.96	s__Veillonella_rogosae float64 -2.37 0	s__Clostridium_sp_CAG_299 float64 -2.37 5.84	s__Bacteroides_coprocola float64 -2.37 8.72	s__Actinomyces_johnsonii float64 -2.37 3.86	s__Asaccharobacter_celatus float64 -1.32 10.2	s__Streptococcus_sp_HMSC034E03 float64 -2.37 0	s__Granulicatella_adiacens float64 -2.37 3.02	s__Olsenella_scatoligenes float64 -2.37 6.83	s__Eubacterium_brachy float64 -2.37 5.38	s__Gordonibacter_pamelaeae float64 -1.23 9.62	s__Eubacterium_sp_OM08_24 float64 -2.37 7.69	s__Cardiobacterium_valvarum float64 -2.37 0	s__Eubacterium_sp_CAG_180 float64 -1.97 11.8	s__Parabacteroides_merdae float64 -1.67 10.4	s__Roseburia_sp_CAG_182 float64 -2.37 8.41	s__Bacteroides_dorei float64 -2.37 9.75	s__Eubacterium_siraeum float64 -1.77 11	s__Barnesiella_intestinihominis float64 -1.97 9.94	s__Methanobrevibacter_smithii float64 -1.92 11.5	s__Firmicutes_bacterium_CAG_145 float64 -1.77 9.17	s__Bacteroides_pectinophilus float64 -2.37 11	s__Bacteroides_cellulosilyticus float64 -1.92 9.43	s__Adlercreutzia_equolifaciens float64 -1.32 10.2	s__Ruminococcus_bicirculans float64 -1.76 12.1	s__Firmicutes_bacterium_CAG_110 float64 -1.97 9.72	s__Parabacteroides_distasonis float64 -1.67 11.3	s__Ruthenibacterium_lactatiformans float64 -0.86 9.64	s__Anaeromassilibacillus_sp_An250 float64 -1.77 9.15	s__Roseburia_sp_CAG_303 float64 -2.37 8.33	s__Odoribacter_splanchnicus float64 -1.53 8.67	s__Oscillibacter_sp_CAG_241 float64 -1.77 10.8	s__Firmicutes_bacterium_CAG_95 float64 -2.04 8.62	s__Alistipes_shahii float64 -1.7 7.93	s__Actinomyces_sp_ICM47 float64 -2.04 6.42	s__Eggerthella_lenta float64 -1.81 10.7	s__Escherichia_coli float64 -1.77 13.2	s__Enterococcus_faecalis float64 -2.04 9.71	s__Butyricimonas_virosa float64 -1.9 8.64	s__Bacteroides_sp_CAG_144 float64 -2.37 6.49	s__Enterorhabdus_caecimuris float64 -1.43 7.68	s__Intestinibacter_bartlettii float64 -1.97 9.04	s__Massiliomicrobiota_timonensis float64 -2.04 7.8	s__Lactobacillus_plantarum float64 -2.37 9.34	s__Leuconostoc_pseudomesenteroides float64 -2.04 5.42	s__Clostridium_leptum float64 -1.77 8.12	s__Erysipelatoclostridium_ramosum float64 -1.97 10.6	s__Slackia_isoflavoniconvertens float64 -1.86 10.1	s__Lactobacillus_otakiensis float64 -2.37 5.05	s__Romboutsia_ilealis float64 -2.04 6.65	s__Roseburia_sp_CAG_309 float64 -2.37 7.76	s__Phascolarctobacterium_sp_CAG_266 float64 -2.37 8.96	s__Clostridium_innocuum float64 -1.81 9.51	s__Streptococcus_vestibularis float64 -1.92 7.87	s__Clostridium_sp_CAG_58 float64 -1.81 9.78	s__Lactococcus_petauri float64 -2.04 7.97	s__Actinomyces_graevenitzii float64 -2.04 7.83	s__Aeriscardovia_aeriphila float64 -2.37 6.24	s__Bifidobacterium_animalis float64 -2.37 10.4	s__Enterococcus_pseudoavium float64 -2.37 1.32	s__Bilophila_wadsworthia float64 -1.97 7.71	s__Akkermansia_muciniphila float64 -1.77 12.1	s__Bacteroides_intestinalis float64 -2.04 9.2	s__Dialister_sp_CAG_357 float64 -2.37 11.1	s__Bifidobacterium_pseudocatenulatum float64 -2.04 11.5	s__Eubacterium_sp_CAG_38 float64 -1.97 7.79	s__Bacteroides_fragilis float64 -1.97 10	s__Clostridium_sp_CAG_253 float64 -2.37 6.93	s__Ruminococcus_obeum_CAG_39 float64 -2.37 8.31	s__Clostridium_sp_CAG_167 float64 -2.37 10.2	s__Bifidobacterium_bifidum float64 -1.92 12.3	s__Bifidobacterium_catenulatum float64 -2.04 11.7	s__Blautia_sp_CAG_257 float64 -1.97 13	s__Lactobacillus_gasseri float64 -2.04 8.57	s__Intestinimonas_butyriciproducens float64 -1.86 8.06	s__Lactobacillus_acidophilus float64 -2.37 5.63	s__Parasutterella_excrementihominis float64 -1.97 8.82	s__Alistipes_indistinctus float64 -2.04 7.77	s__Eisenbergiella_massiliensis float64 -1.92 8.05	s__Proteobacteria_bacterium_CAG_139 float64 -2.04 9.25	s__Clostridium_spiroforme float64 -2.04 8.47	s__Catabacter_hongkongensis float64 -2.37 5.05	s__Clostridium_citroniae float64 -1.92 7.88	s__Lawsonibacter_asaccharolyticus float64 -1.59 8.34	s__Hungatella_hathewayi float64 -1.81 8.3	s__Eisenbergiella_tayi float64 -1.97 9.33	s__Turicibacter_sanguinis float64 -2.04 8.87	s__Coprobacter_fastidiosus float64 -2.04 6.68	s__Bacteroides_sp_D2 float64 -2.37 2.6	s__Sellimonas_intestinalis float64 -1.97 9.67	s__Coprobacillus_cateniformis float64 -2.04 8.45	s__Clostridium_scindens float64 -1.92 7.65	s__Eubacterium_sulci float64 -2.37 5.1	s__Dielma_fastidiosa float64 -2.04 8.27	s__Clostridium_bolteae_CAG_59 float64 -2.04 4.57	s__Streptococcus_gordonii float64 -1.92 7.4	s__Alistipes_inops float64 -2.04 11	s__Bacteroides_finegoldii float64 -2.37 9.32	s__Monoglobus_pectinilyticus float64 -2.04 9.37	s__Haemophilus_sputorum float64 -2.37 3.39	s__Propionibacterium_freudenreichii float64 -2.37 8.76	s__Paraprevotella_xylaniphila float64 -2.37 8.13	s__Blautia_hydrogenotrophica float64 -1.97 7.67	s__Dialister_invisus float64 -1.92 9.98	s__Clostridium_clostridioforme float64 -2.37 10.8	s__Paraprevotella_clara float64 -2.37 6.31	s__Bacteroides_nordii float64 -2.37 5.76	s__Ruminococcaceae_bacterium_D16 float64 -2.04 7.42	s__Clostridium_lavalense float64 -1.9 7.69	s__Bifidobacterium_dentium float64 -2.37 8.26	s__Bacteroides_faecichinchillae float64 -2.37 4.06	s__Clostridium_bolteae float64 -1.79 9.04	s__Streptococcus_sp_A12 float64 -2.37 5.14	s__Lachnoclostridium_sp_An14 float64 -1.97 9.03	s__Lachnoclostridium_sp_An138 float64 -2.37 5	s__Actinomyces_naeslundii float64 -2.37 6.36	s__Anaerotruncus_colihominis float64 -1.97 7.13	s__Bacteroides_faecis float64 -1.97 10.1	s__Actinomyces_sp_oral_taxon_448 float64 -2.37 6.17	s__Enterococcus_italicus float64 -2.37 4.64	s__Actinomyces_oris float64 -2.37 6.47	s__Bacteroides_caccae float64 -1.81 10.2	s__Firmicutes_bacterium_CAG_170 float64 -2.37 6.82	s__Denitrobacterium_detoxificans float64 -2.37 4.38	s__Desulfovibrio_piger float64 -2.37 7.67	s__Firmicutes_bacterium_CAG_238 float64 -2.04 8.9	s__Mogibacterium_diversum float64 -2.37 4.42	s__Solobacterium_moorei float64 -2.37 7.62	s__Atopobium_rimae float64 -2.37 7.87	s__Clostridium_disporicum float64 -2.04 9.7	s__Dorea_sp_CAG_317 float64 -2.37 9.39	s__Anaeromassilibacillus_sp_An172 float64 -2.37 0	s__Blautia_coccoides float64 -2.37 7.08	s__Clostridium_symbiosum float64 -1.9 10.3	s__Anaeroglobus_geminatus float64 -2.37 0	s__Saccharomyces_cerevisiae float64 -2.37 5.13	s__Clostridium_paraputrificum float64 -2.37 7.08	s__Enterococcus_avium float64 -2.37 8.57	s__Terrisporobacter_othiniensis float64 -2.37 0	s__Lachnospira_pectinoschiza float64 -1.97 10	s__Prevotella_copri float64 -1.97 13.1	s__Bacteroides_massiliensis float64 -1.9 9.15	s__Clostridium_asparagiforme float64 -2.04 5.82	s__Lactobacillus_pontis float64 -2.37 3.12	s__Anaerofilum_sp_An201 float64 -2.37 4.46	s__Bacteroides_clarus float64 -2.04 9.32	s__Abiotrophia_sp_HMSC24B09 float64 -2.37 5.01	s__Streptococcus_sp_M334 float64 -2.37 3.3	s__Clostridium_aldenense float64 -2.37 3.92	s__Clostridium_sp_7_2_43FAA float64 -2.37 0	s__Lactococcus_garvieae float64 -2.04 7.31	s__Propionibacterium_acidifaciens float64 -2.37 5.49	s__Megamonas_funiformis_CAG_377 float64 -2.04 8.12	s__Absiella_dolichum float64 -2.37 6.23	s__Harryflintia_acetispora float64 -2.37 6.37	s__Eubacterium_dolichum_CAG_375 float64 -2.37 6.25	s__Megamonas_hypermegale float64 -2.04 7.46	s__Megasphaera_sp_DISK_18 float64 -2.37 5.45	s__Blautia_producta float64 -2.37 6.73	s__Megamonas_funiformis float64 -2.04 7.56	s__Streptococcus_sp_NLAE_zl_C503 float64 -2.37 3.96	s__Bifidobacterium_breve float64 -2.04 12.4	s__Actinomyces_massiliensis float64 -2.37 2.82	s__Phascolarctobacterium_faecium float64 -2.37 9.04	s__Pseudopropionibacterium_propionicum float64 -2.37 2.7	s__Acidaminococcus_intestini float64 -2.04 9.13	s__Lactonifactor_longoviformis float64 -2.37 4.11	s__Rikenella_microfusus float64 -2.37 5.53	s__Clostridium_sp_D5 float64 -2.37 3.91	s__Clostridium_saccharolyticum float64 -1.97 9.46	s__Faecalicatena_orotica float64 -2.37 0	s__Firmicutes_bacterium_CAG_94 float64 -1.97 9.41	s__Anaerofustis_stercorihominis float64 -1.97 7.67	s__Clostridium_methylpentosum float64 -2.37 6.34	s__Anaerotignum_lactatifermentans float64 -2.04 10.7	s__Atopobium_parvulum float64 -2.37 4.56	s__Eubacteriaceae_bacterium_CHKCI005 float64 -2.37 4.45	s__Veillonella_sp_T11011_6 float64 -2.37 5.05	s__Cronobacter_sakazakii float64 -2.37 7.8	s__Fusobacterium_varium float64 -2.37 6.38	s__Fusobacterium_nucleatum float64 -1.9 6.3	s__Pediococcus_acidilactici float64 -2.37 7.27	s__Olsenella_uli float64 -2.37 6.15	s__Streptococcus_sobrinus float64 -2.37 5.25	s__Parvimonas_sp_KA00067 float64 -2.37 8.55	s__Prevotella_sp_CAG_1320 float64 -2.37 10.5	s__Clostridium_butyricum float64 -2.37 3.69	s__Parascardovia_denticolens float64 -2.37 4.4	s__Citrobacter_braakii float64 -2.37 10.9	s__Tyzzerella_nexilis float64 -2.37 5.77	s__Peptococcus_niger float64 -2.37 6.43	s__Bifidobacterium_angulatum float64 -2.37 10	s__Anaerococcus_vaginalis float64 -2.37 6.63	s__Lactobacillus_gastricus float64 -2.37 2.74	s__Actinomyces_sp_oral_taxon_180 float64 -2.37 3.28	s__Catenibacterium_mitsuokai float64 -2.37 11.2	s__Streptococcus_sp_HPH0090 float64 -2.37 4.83	s__Scardovia_wiggsiae float64 -2.04 6	s__Bacteroides_salyersiae float64 -2.37 9.35	s__Mogibacterium_timidum float64 -2.37 3.01	s__Clostridium_sp_CAG_590 float64 -2.37 10.7	s__Clostridium_sp_CAG_964 float64 -2.37 10.2	s__Treponema_berlinense float64 -2.37 8.74	s__Firmicutes_bacterium_CAG_555 float64 -2.37 7.95	s__Prevotella_sp_CAG_1092 float64 -2.37 7.36	s__Bacteroides_sp_CAG_633 float64 -2.37 6.54	s__Prevotella_sp_CAG_279 float64 -2.37 10.7	s__Clostridium_sp_CAG_632 float64 -2.37 7.44	s__Atopobium_deltae float64 -2.37 6.2	s__Lactobacillus_rogosae float64 -2.04 6.89	s__Ruminococcus_callidus float64 -2.37 6.97	s__Firmicutes_bacterium_CAG_534 float64 -2.37 6.23	s__Bacteroides_sp_CAG_598 float64 -2.37 5.75	s__Bacteroides_galacturonicus float64 -2.37 8.11	s__Parabacteroides_sp_CAG_409 float64 -2.37 9.23	s__Prevotella_sp_CAG_520 float64 -2.37 5.55	s__Butyrivibrio_sp_CAG_318 float64 -2.04 7.9	s__Prevotella_stercorea float64 -2.37 7.62	s__Butyrivibrio_crossotus float64 -2.37 12	s__Clostridium_sp_CAG_411 float64 -2.37 8.48	s__Bacteroides_sp_CAG_530 float64 -2.37 7.84	s__Bacteroides_faecis_CAG_32 float64 -2.04 9.63	s__Butyricimonas_synergistica float64 -1.97 6.5	s__Parvimonas_micra float64 -1.92 7.97	s__Mitsuokella_jalaludinii float64 -2.37 7.31	s__Sharpea_azabuensis float64 -2.37 5.36	s__Fretibacterium_fastidiosum float64 -2.37 4.55	s__Fusobacterium_equinum float64 -2.37 3.15	s__Fusobacterium_gonidiaformans float64 -2.37 6.63	s__Coprobacter_secundus float64 -1.97 5.11	s__Enterococcus_durans float64 -2.37 7.75	s__Methanosphaera_stadtmanae float64 -2.37 8.45	s__Prevotella_sp_CAG_873 float64 -2.04 7.69	s__Ruminococcus_sp_CAG_488 float64 -2.37 0	s__Clostridium_sp_CAG_413 float64 -2.37 7.85	s__Prevotella_sp_CAG_617 float64 -2.37 0	s__Bacteroides_sp_CAG_443 float64 -2.37 7.32	s__Blastocystis_sp_subtype_1 float64 -2.37 2.16	s__Cloacibacillus_porcorum float64 -2.37 1.47	s__Actinomyces_cardiffensis float64 -2.37 4.62	s__Bacteroides_coprophilus float64 -2.04 7.91	s__Parabacteroides_goldsteinii float64 -2.37 8.44	s__Peptostreptococcus_stomatis float64 -2.04 7.65	s__Eubacterium_limosum float64 -2.37 5.99	s__Ruminococcus_sp_CAG_563 float64 -2.37 0	s__Ruminococcus_sp_CAG_624 float64 -2.37 5.79	s__Eubacterium_callanderi float64 -2.37 3.98	s__Butyribacterium_methylotrophicum float64 -2.37 0	s__Anaerotruncus_sp_CAG_528 float64 -2.37 8.27	s__Ruminococcus_sp_CAG_330 float64 -2.37 8.52	s__Tetragenococcus_halophilus float64 -2.37 0	s__Clostridium_sp_CAG_242 float64 -2.04 6.94	s__Lactobacillus_sakei float64 -2.04 7.58	s__Weissella_viridescens float64 -2.37 0	s__Eubacterium_sp_An11 float64 -2.37 4.54	s__Firmicutes_bacterium_CAG_424 float64 -2.37 1	s__Lachnoclostridium_sp_An118 float64 -2.37 4.91	s__Corynebacterium_durum float64 -2.37 4.91	s__Streptococcus_lutetiensis float64 -2.37 8.64	s__Lactobacillus_paragasseri float64 -2.04 9.69	s__Lactobacillus_crispatus float64 -2.37 4.53	s__Lactobacillus_salivarius 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2.36	s__Ruminococcaceae_bacterium_D5 float64 -2.37 8.94	s__Parabacteroides_johnsonii float64 -2.04 8.24	s__Prevotella_bivia float64 -2.37 4.36	s__Ruminococcus_sp_CAG_403 float64 -2.04 10.6	s__Campylobacter_hominis float64 -2.37 3.13	s__Streptococcus_downei float64 -2.37 5.83	s__Alcaligenes_aquatilis float64 -2.37 2.3	s__Stenotrophomonas_maltophilia float64 -2.37 4.99	s__Dialister_succinatiphilus float64 -2.37 6.58	s__Pseudoflavonifractor_sp_An184 float64 -2.37 7.74	s__Proteus_vulgaris float64 -2.37 4.49	s__Flavonifractor_sp_An10 float64 -2.37 6.9	s__Leuconostoc_suionicum float64 -2.37 4.78	s__Klebsiella_oxytoca float64 -1.97 11.4	s__Haemophilus_pittmaniae float64 -2.37 3.85	s__Neisseria_subflava float64 -2.37 2.35	s__Turicimonas_muris float64 -2.04 6.3	s__Odoribacter_laneus float64 -2.37 7.53	s__Clostridiales_bacterium_CHKCI006 float64 -2.37 4.16	s__Fusobacterium_sp_CAG_439 float64 -2.37 5.57	s__Alistipes_timonensis float64 -2.37 5.29	s__Candidatus_Gastranaerophilales_bacterium float64 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Publication Abstract

Colorectal cancer, a commonly diagnosed cancer in the elderly, often develops slowly from benign polyps called adenoma. The gut microbiota is believed to be directly involved in colorectal carcinogenesis. The identity and functional capacity of the adenoma- or carcinoma-related gut microbe(s), however, have not been surveyed in a comprehensive manner. Here we perform a metagenome-wide association study (MGWAS) on stools from advanced adenoma and carcinoma patients and from healthy subjects, revealing microbial genes, strains and functions enriched in each group. An analysis of potential risk factors indicates that high intake of red meat relative to fruits and vegetables appears to associate with outgrowth of bacteria that might contribute to a more hostile gut environment. These findings suggest that faecal microbiome-based strategies may be useful for early diagnosis and treatment of colorectal adenoma or carcinoma.

Dataset

156 metagenomic shotgun-sequenced faecal samples from colorectal adenoma and carcinoma patients and healthy controls

Configurations

presence-absence
CLR

Usage

dataset = load_dataset("wwydmanski/colorectal-carcinoma-microbiome-fengq", "presence-absence")
train_dataset, test_dataset = dataset['train'], dataset['test']
X_train = np.array(train_dataset['values'])
y_train = np.array(train_dataset['target'])

X_test = np.array(test_dataset['values'])
y_test = np.array(test_dataset['target'])

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1.35 MB

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1.76 MB

Number of rows:

214