Source: http://www.google.com/patents/US4751077?dq=6,406,777
Timestamp: 2018-01-22 16:39:09
Document Index: 714800408

Matched Legal Cases: ['art, 1979', 'Application No. 83306221', 'application No. 2', 'application No. 2', 'art 1', 'application No. 2', 'art 2', 'application No. 2', 'art 3', 'application No. 2']

Patent US4751077 - Interferons with novel cysteine pattern - Google Patents
Human interferons containing novel cysteine substitutions and disulfide bonds are disclosed. The amino acid sequence of a first interferon is combined with the cysteine and/or disulfide pattern of a second interferon resulting in a molecule with hybrid properties....http://www.google.com/patents/US4751077?utm_source=gb-gplus-sharePatent US4751077 - Interferons with novel cysteine pattern
Publication number US4751077 A
Application number US 06/676,900
Also published as EP0146413A2, EP0146413A3
Publication number 06676900, 676900, US 4751077 A, US 4751077A, US-A-4751077, US4751077 A, US4751077A
Inventors Leslie D. Bell, John C. Smith, Alan G. Porter, John R. Adair
Patent Citations (4), Non-Patent Citations (6), Referenced by (36), Classifications (20), Legal Events (7)
US 4751077 A
The novel feature of the invention described below is that the coding sequence of the human interferon beta gene (HuIFN-β) has been changed at specific points, by the process of site directed mutagenesis, to induce novel amino acid arrangements.
Specifically the number and arrangement of cysteine residues has been altered to produce a pattern analogous to that observed in the human interferon-α (HuIFN-α) family. The novel arrangement is expected to impose an IFN-α-like tertiary structure on the IFN-β protein sequence and hence lead to novel properties of the molecule.
The alpha and beta interferons, specifically Human IFNα1 ; (D) and Human IFN-β have been shown to be structurally related. They are 45% homologous at the nucleotide level and 29% homologous at the amino acid level (Taniguchi et al., Nature 285 547 (1980). Sternberg and Cohen (Int. J. Biol. Macromol. 4 137 (1982)) have produced a model suggesting the α and β interferons' tertiary structure may be similar. Disulfide bonds are known to influence both tertiary protein structure and stability. The tertiary structure of the Human IFNα has been shown to be in part dependent upon the disulfide linkages (Wetzel et al. UCLA Symp. Mol. Cell Biol. 1982, 25, 365-376).
In addition to conferring antiviral resistance on target cells, interferons (IFNs) have both immunomodulatory and antiproliferative properties (Stewart, 1979, The Interferon System, Springer, Berlin). The IFNs, by virtue of their antigenic, biological and physico-chemical properties, can be grouped into three classes: Type I, IFN-α ("leucocyte") and IFN-β ("fibroblast"); and Type II, IFN-γ ("immune") (Stewart et al., 1980, Nature, 286, 110). Detailed information is now available on the virus-induced, acid stable IFN-α and IFN-β and the mitogen-induced IFN-γ. All three IFN cDNAs have been cloned from their respective induced mRNAs, the DNA sequenced and their potential protein sequences deduced (Taniguchi et al., 1979, Proc. Japan Acad. Ser. B 55, 461-469; Houghton et al., 1980, Nucleic Acids Res. 8, 2885-2894; Nagata et al., 1980, Nature, 284, 316-320; Nagata et al., 1980, Nature, 287, 401-408; Goeddel et al., 1981, Nature, 290, 20-26; Gray et al., 1982, Nature, 295, 503-508). IFNs-α and IFN-β have been purified to homogeneity and the partial protein sequences obtained confirm the derived IFN-β sequence and the sequences of some recombinant IFN-α's (Allen and Fantes, 1980, Nature, 287, 408-411; Knight et al., 1980, Science, 207, 525-526; Stein et al., 1980, Proc. Natl. Acad. Sci, USA, 77, 5716-5719; Zoon et al., Science, 207, 527-528). The cysteine at the 17 position of beta interferon has been replaced by serine (R. O'Connell, Genetic Technology News, 3: 2, July 1983, European patent Application No. 83306221.9).
Human IFN-α is specified by a multigene family comprising at least 14 different genes, with at least 3 additional pseudogenes and 4 other genes known to hybridize, but not yet sequenced (Weissman, 1982, 11th Annual UCLA Symposium on Molecular and Cellular Biology). In contrast, there is only one well characterised human IFN-β gene (Owerbach et al., 1981, Proc. Natl. Acad. Sci, USA, 78, 3123-3127). The IFN-γ gene differs from IFNs-α and -β by having three introns and thus displays another distinction between the Type I and Type II IFNs (Gray and Goeddel, 1982, Nature, 298, 859-863).
Homologies exist between members of the human IFN-α multigene family, and between human IFN-α and IFN-β genes. It appears that IFN-α and IFN-β genes are the products of an ancient gene duplication, and perhaps diverged early in vertebrate evolution (Taniguchi et al., 1980, Nature, 285, 547-549). In contrast, the IFN-α multigene family seems to have diverged much more recently, perhaps within the last 26 million years (Miyata & Hayashida, 1982, Nature, 295, 165-168).
While the mechanism of action of interferons is not completely understood, certain physiological or enzymatic activities respond to the presence of the interferons. These activities include RNA synthesis and protein synthesis. Among the enzymes induced by interferons is (2'-5')(A)n synthetase which is activated by double stranded RNA. This synthetase generates 2'-5' linked oligoadenylates from ATP which activates a latent endoribonuclease, RNAse L, which cleaves single stranded RNA such as messenger RNA (mRNA) and ribosomal RNA (rRNA). Interferon induces a protein kinase which phosphorylates at least one peptide chain initiation factor and inhibits protein synthesis (Lengyel, ibid p. 253).
Interferons have been shown to be negative growth regulators for cells by regulation of the (2'-5')An synthetase activity (Creasey et al., Mol. and Cell Biol., 3, 780,786 1983). IFN-β was indirectly shown to be involved in the normal regulation of the cell cycle in the absence of inducers through the use of anti-IFN-β antibodies. Similarly, interferons have been shown to have a role in differentiation (Dolei et al., J. Gen. Virol 46: 227-236, 1980) and in immunomodulation (Gresser, Cell. Immunol. 34: 406-415, 1977).
Interferons may also alter methylation patterns of mRNAs and alter the proportion of fatty acids in membrane phospholipids, thereby changing the rigidity of cellular membranes. These and other mechanisms may respond to interferon-like molecules in varying degrees depending upon the structure of the interferon-like polypeptide. It is envisaged that an IFN-β with an IFN-α disulfide pattern may display a new advantageous phenotype. For example, IFNs which show a greater antiviral to antiproliferative activity (and vice-versa) or have an enhanced activity/specificity against a particular virus infected tissue or transformed cell mass.
One object of this invention is the reorganization of the position and number of cysteines in HuIFN-β to a pattern analogous to that found in the HuIFN-α family, by the process of site directed mutagenesis of individual nucleotides of the HuIFN-β coding sequence, so as to cause defined changes in the amino acid sequence of the HuIFN-β. The resultant modified HuIFN-β molecules show different or novel properties from that of HuIFN-β, and may show properties similar to those exhibited by the HuIFN-α family. A summary flow chart of the construction of the modified HuIFN-62 IFNX802, 803, and 804 molecules are shown in FIG. 1. Similarly, the disulfide pattern and amino acid sequence of the alpha, beta and gamma human interferons can be combined to form new hybrid or modified interferons. Another object of the invention is to create disulfide linkages that improve the physical and pharmacological properties of modified interferons, including stability.
The coding sequences of the leukocyte (alpha) interferon (IFN-α) family are distantly related to the sequence of the fibroblast (beta) interferon (IFN-β) gene, for example the coding sequence of HuIFN-α1 (D) is 45% homologous at the nucleotide level and 29% homologous at the amino acid level to HuIFN-β (Taniguchi et al, Nature 285 547 (1980).
Secondary and tertiary structures of α- and β-interferons have been derived by various computer modelling procedures. Sternberg and Cohen (Int.J.Biol.Macromol. 4 137 (1982)) have produced a model for interferon tertiary structure applicable either to alpha or beta interferon, suggesting that the in vivo structures of each type of interferon are similar.
Human interferon alpha's have been shown to contain four cysteines at positions 1, 29, 98, 138 (positions relate to the IFN-α2 (A) sequence) which have been shown to form two intramolecular disulfide bridges with bonds between cys 1 and cys 98, between cys 29 and cys 138 (Wetzel, Nature 289 606 (1981). Human interferon beta contains three cysteines, at positions 17, 31 and 141. Positions 31 and 141 in beta have been considered analogous to positions 29 and 138 in the interferon alpha family. It has been shown that alteration of cys141 to tyr141 abolishes interferon beta antiviral activity. Further it has been described that pre-treatment of HuIFN-β with the reducing agent dithiothreitol abolishes antiviral activity (Shepard et al. Nature 294 563 (1981) ). These observations have been taken to show that a disulfide bridge between cys 31--141 is essential for the activity of HuIFN-β.
In order to produce the coding strand in a single stranded form the most practical means is to introduce the sequence into a bacteriophage which has both double stranded and single stranded DNA phases during its life cycle. Two phages commonly used are φ×174 and M13. The bacteriophage M13 was used in this method.
For example, the desired change may introduce or delete a restriction endonuclease site which can be easily detected. Alternatively, the difference in Tm (point of 50% irreversible melting) of hybrids formed between the oligonucleotide primer and either the original sequence of the mutant sequence can form the basis of a hybridization screening procedure (e.g., Zoller and Smith, 1982).
TABLE 1______________________________________NOMENCLATURE FOR CONSTRUCTIONS                     PRODUCTCONSTRUCTION       TRIVIAL NAME  IDENTIFICATION______________________________________I           M13-1RB-00    HuIFN-βII          M13-4AB-00    HuIFN-βIII         mJA1          HuIFN-X802IV          mJA2          HuIFN-X803V           mJA3          HuIFN-X804VI          pJA1          HuIFN-X802VII         pJA2          HuIFN-X803VIII        pJA3          HuIFN-X804______________________________________
Wild type M13 has previously been modified for use as a cloning vehicle by the insertion of a fragment of E.coli DNA containing the lactose operon control region (lac promoter) and coding information for an active β-galactosidase (β-gal) in a non-essential region of the phage DNA. When the lac promoter is active, the expression of β-gal occurs and this is detected by a simple blue colour reaction in the infected cells. However, the cloning of DNA fragments generally results in the interruption of the lac Z gene and hence in colourless plaques due to the failure of β-gal expression. Thus, recombinants may be detected visually.
Construction I (M13-1RB-00, HuIFN-β)
A 1172 bp DNA fragment containing the trp promoter followed by the mature HuIFN-β1 gene bounded on the left by an EcoRI site and on the right by a Bam HI site (GB patent application No. 2,068,970) was recloned between the EcoRI and Bam HI sites of phage M13 mp 701 as follows:
The joining of the EcoRI-Bam HI fragment containing the HuIFN-β1 gene to the EcoRI-Bam HI digested M13 mp 701 vector was performed in an incubation of 50 ul containing: 0.25 μg vector; 0.9 μg EcoRI-Bam HI cut p1/24 (GB P). Approximately 8% of plaques on each plate were colourless, indicating the presence of recombinant phages (1RB-00). Recombinants were firmly identified by size and by nucleotide sequence analysis, also by expression of antiviral activity.
To prepare sufficient ss DNA for nucleotide sequence analysis, colourless plaques were picked and added to 2.5 ml YT medium containing 25 μl of a dense, overnight culture of E.coli K12 JM101. Phage was grown by aeration for 5 hours at 37° C. and the ss DNA purified by known methods, (see, for example, Sanger, F., et al, (J. Mol. Biol., 143, 161, 1980). The ss DNA was used as the template for dideoxy sequencing, (see, for example, Sanger, F., et al, Proc. Natl. Acad. Sci. U.S.A., 74, 5463, 1977). For example, the presence and sequence of the trp promoter and the presence of the HuIFN-βl gene was established with an oligonucleotide primer, IFIA (GB patent application No. 2,068,970) which is known to prime in the HuIFN-β coding region.
EXAMPLE 2 Construction II (M13-4AB-00, HuIFN-β)
Deletion of the lac promoter from M13-1RB-00(I) to give a recombinant capable of expressing mature HuIFN-β under the control of only the trp promoter, II=M13-4AB-00) (See FIG. 3).
Construction of this clone was achieved by excision of a 406 bp Ava I-EcoRI fragment as follows: Ava I-EcoRI double digestion was effected in 100 μl containing: 10 μg ds DNA prepared from construction I, (see, for example, Birnboim, H.C., and Doly, J., Nucl. Acids Res., 7, 1513, 1979), 6 mM Tris-HCl, pH 7.5, 10 mM MgCl2, 6 mM 2-mercaptoethanol, 30 mM NaCl, 15 units Ava I and 15 units EcoRI for 90 minutes at 37° C. The DNA was precipitated by the addition of 20 μg tRNA; 0.3 M NaAc, pH 4.5 to 0.3 M final concentration and 0.3 ml ethanol for 10 minutes at -70° C. Repair of protruding 5'-ends, with DNA polymerase, was then done in a 50 μl final volume.
To "fill-in" protruding 5'-ends, the DNA fragments were repaired in vitro with DNA polymerase I (Klenow fragment) in a 50 μl reaction containing 1 μg DNA in 10 mM NaCl, 50 mM Tris-HCl, pH 7.8, 10 mM MgCl2, 1 mM 2-mercaptoethanol, 0 2 mM each deoxynucleoside 5'-triphosphate, 20 μg/ml. bovine serum albumin, 0.2 mM each deoxynucleoside 5'-triphosphate, and 1 unit of Klenow enzyme for 20 minutes at 14° C. in a volume of 50 μl, then for 10 minutes at 65° C.
The repaired DNA was self-ligated in a 50 μl incubation containing 5 μl of the above incubation (equivalent to 0.1 μg DNA), 66 mM Tris-HCl, pH 7.5, 5 mM MgCl2, 20 mM DTT, 1 mM ATP, and 4.5 units T4 DNA ligase for 17 hours at 25° C. Uptake of DNA into CaCl2 -treated E.coli K12 JM101 and plating out of cells for plaques was performed using standard methods.
Alteration of Human Interferonβ (HuIFNβ) amino acid 3 (tyrosine) to cysteine, to give mJA1. (See FIGS. 3 and 4 and Chart 1).
A tetradecamer of the sequence 5' OH-AGT TGC AGC TCA TG-OH (FIG. 4) was constructed using standard phosphotriester chemistry; Reference: Nucleic Acids Research 11 477 (1983). This sequence is complementary to the sequence 5'C ATG AGC TAC AAC T which consists of the nucleotide preceding the initiator ATG followed by the first 13 nucleotides of the coding sequence of Human IFN-β- (GB patent application No. 2,068,970) with the exception that the 6th nucleotide of the primer, numbered from the 5' end corresponds to the complement of the desired mutation. This mutation will change the nucleotide A at position 8 of the coding sequence to a G.
Specific priming of the synthetic oligonucleotide to the region which was to be mutated was observed by the following procedure. First the oligonucleotide was labelled with [32 P] at the 5' terminus. 10 pmole of oligonucleotide was incubated in a total volume of 50 μl consisting of 50 mM Tris-HCl pH 7,6, 10 mM MgCl2, 0.1 mM EDTA (ethylene diamine tetra acetic acid), 10 mM dithiothreitol, 0.1 Mm spermidine, 50 μCi [γ-32 P] ATP (5000 Ci/mmole, Amersham) and 5 units of polynucleotide kinase. The reaction mix was incubated at 37° C. for 60 minutes, followed by 65° C. for 5 minutes. The oligonucleotide was separated from unincorporated [γ-32 P] ATP by differential elution from a column of Whatman DE52 ion exchange resin (0.3 ml bed volume). The oligonucleotide was eluted in 0.5 M NaCl, 10 mM Tris HCl pH 7.5, 1 mM EDTA, 20 μg E.coli tRNA was added and the oligonucleotide was precipitated at -70° C. after the addition of three columes of ethanol. The oligonucleotide was redissolved in 8 μl of 10 mM Tris HCl pH 7.5, 1 mM EDTA.
5 pmoles of [32 P] oligonucleotide were annealed to 0.5 pmole of M13-4AB-00 in a total volume of 5 μl of 10 mM NaCl, 40 mM Tris-HCl pH 7.5, 20 mM MgCl2, 2 mM 2-mercaptoethanol, by heating at 80° C. for 5 minutes followed by incubation at 20° C. for 1 hour.
The samples were adjusted to 67.5 mM NaCl, 45 mM Tris-HCL pH 7.5, 25 mM MgCl2, 1 mM 2-mercaptoethanol, 83 uM each of dATP, dCTP, dGTP, dTTP and 0.5 unit of the `Klenow` fragment of DNA Polymerase I (BRL Inc.) in a final volume of 15 μl. The samples were incubated at 25° C. for 4 hours. The samples were diluted eight fold with 10 mM Tris-HCL pH 7.5, 1 mM EDTA, heated to 65° C. for 5 minutes, adjusted to 0.3 M Na acetate pH 4.6 and finally the nucleic acid was precipitated with three volumes of ethanol at -70° C. for 15 minutes. In order to identify specific priming products the samples were digested with the enzyme EcoRl and the products separated by electrophoresis through a 7 M Urea, 6% Acrylamide, 0.3% Bis (NN'-methylene bisacrylamide) gel prepared in 135 mM Tris-HCL pH 8.8, 45 mM Na borate, 1 mM EDTA.
Formation of complete closed circular molecules was achieved as follows: The oligonucleotide was phosphorylated as described earlier except that ATP at 1 mM final concentration replaced the [γ-32 P] ATP. The oligonucleotide was annealed as described earlier except that a primer to template ratio of 100 was used (50 pmole oligonucleotide per 0.5 pmole template).
The transcription and ligation of the product was performed as follows: 10 μl of anealed primer-template, containing 0.5 pmole of template and 50 pmole of primer in 100 mM NaCl, 40 mM tris-HCl pH 7.5, 20 mM MgCl2, 2 mM 2-mercaptoethanol was adjusted to a volume of 20 μl containing 20 μCi [α32 P] d ATP (2000ci/mmole) 250 μMm each of dATP, dCTP, dGTP, dTTP, 0.8 unit of Klenow DNA polymerase I, 2 units T4 ligase (BRL Inc.) in 67.5 mM NaCl, 45 mM Tris pH 7.5, 25 mM MgCl2, 1 mM 2-mercaptoethanol. After 30 minutes at 22° C. dATP was added to 250 μM and a further 0.8 unit of Klenow DNA polymerase was added. The mixture was incubated a further 2.5 hours at 22° C. The DNA was adjusted to 0.3 M Na acetate pH 4.6, and precipitated with three volumes of ethanol at -20° C. overnight (16 hrs).
Incomplete transcripts were digested with S1 nuclease as follows. The DNA was incubated for 30 minutes at 25° C. in a solution of 300 mM NaCl, 5 mM ZnCl2, 30 mM Na acetate pH 4.5 at an initial template concentration of 1 nM in a final volume of 250 μl. S1 nuclease was added at the rate of 1 unit per 0.01 pmole of initial template.
The products were added directly to 0.4 mls of competent E.coli JM101 at 0° C. After 40 minutes the cells were heat shocked for 2 minutes at 42° C. then diluted into 20 ml of YT broth (8 g tryptone, 5 g yeast extract, 5 g NaCl per liter) at 37° C. The cells were grown at 37° C. for 16 hours. The cells were pelleted by centrifugation and phage in the supernatent were stored in 60% glycerol at -20° C.
Dilutions of phage were plated on indicator cells and plates containing 2-400 plaques were used to make nitrocellulose replicates for hybridization, using the [32 P] phosphorylated oligonucleotide as probe in a manner similar to that of Benton and Davis (Science 196, 180, 1977). Filters were prewashed in 6×SSC at 40° C. for 3 hrs and hybridized using 300 μl of a solution of 6×SSC/10×Denhardts/0.1% SDS containing primer at 400 pM for 16 hrs at 40° C., under paraffin oil [1×SSC=0.15 M. NaCl; 0.015 M Na citrate, pH 7.2. 10×Denhardts=0.2% Bovine Serum Albumin (BSA); 0.2% polyvinyl pyrollidone (PVP); 0.2% Ficoll]. Filters were washed in 6×SSC/0.1% SDS at 15° C., with six changes of five minutes each.
Fifty plaques which showed hybridization above background were picked into 50 μl each of LTB (10 mM Tris-HCl pH 7.5, 20 mM NaCl, 1 mM EDTA). Cellular debris was spun out and 1 μl of supernatant for each plaque was spotted onto a lawn of E.coli JM101 which had been allowed to grow for 60 minutes at 37° C. After overnight growth large plaques were formed on the lawn of E.coli JM101. Nitrocellulose replicates were again taken and hybridised as above. Nineteen of the 50 plaques showed hybridization above control levels. These were rescreened exactly as described above. Six were taken for further analysis by DNA sequencing. As the desired change was A to G, the coding strand was analysed by 5'end-labelling followed by the G reactions of the Maxam and Gilbert chemical degradation sequencing technique (Maxam and Gilbert, Methods in Enzymology Vol 65 (1), p 499, 1980) while the non-coding strand was analysed by 3' end-labelling followed by the `C` reaction of the Maxam and Gilbert technique. Thus mutants would exhibit an extra G in the coding strand and an extra C in the non-coding strand compared to parallel reactions on the parent M13-4AB-00. The DNAs were therefore digested with either Hind III to produce staggered ends for 3' labelling, or Hpa I to produce a blunt end for 5' labelling.
Interferon anti-viral assays were performed on extracts of M13 infected or plasmid transformed cells as follows: Fifty 200 ml. cultures in tryptophan-free minimal medium plus glucose were harvested at an optical density (600 nm) of 0.6-0 g by centrifugation at 10,000 rpm for 10 minutes. The cells were then frozen at -70° C., thawed in the presence of 2.5-5.0 ml of 15% (w/v) sucrose; 50 mM Tris-HCl, pH 8.0; 0.1% (w/v) human serum albumin and 2.5 mg lysozyme, then incubated at 20° C. for 15 minutes with shaking. The cell debris was removed by centrifugation at 15,000 rpm for 20 minutes and the supernatant was further clarified and sterilised by filtration through a 0.22 um pore diameter nitrocellulose filter. Finally the extract was assayed for anti-viral activity by monitoring the protection conferred on Vero (African green monkey) cells against the cpe (cytopathic effect) of EMC (Encephalomyocarditis) virus infection in an in vitro microplate assay system (see, for example, Dahl, H., and Degre, M., Acta. Path. Microbiol. Scan., 1380, 863 1972).
Alteration of mutant interferon β (mJA1) at amino acid 101 (valine) to cysteine, to give mJA2. (See FIGS. 3 and 5 and Chart 2).
An octadecamer of sequence 5' OH-CTTCCAGGCATGTCTTCA-OH 3' (FIG. 5) was constructed using phosphotriester chemistry, as for Construction III. This sequence is complementary to the sequence 5'TGAAGACAGTCCTGGAAG.3' which comprises nucleotides 294 to 310 of the IFN-β1 coding sequence (see published GB patent application No. 2,068,970) with the exception that the 9th and 10th nucleotides of the oligonucleotide, numbered from the 5' end, correspond to the complement of the desired mutations. Thus the desired changes will be from G at nucleotide 301 of the coding sequence to T, and from T at nucleotide 302 to G.
Formation of closed circular molecules, ligation, transfection were as described from Example 3. Phage DNA was prepared from the total pool of transformants and used as a template for reannealing of the primer, transcription, ligation, S1 nuclease treatment, and transfection as described, except that in the S1 reaction the conditions were changed to encourage digestion at the mismatch between parent template and primer, so enriching for mutant closed circular molecules in the population. The reaction therefore was performed in 300 μl of 100 mM NaCl, 30 mM Na acetate Ph 4.5, 5 mM Zncl and containing 0.8 pmole of initial template and 2 units of S1 nuclease.
Phage DNA was prepared from the total pool of transformants and the enrichment stage was repeated again exactly as above. 50 plaques from the second round of enrichment were grown in 1 ml (YT medium). 2 μl of each suspension was spotted directly onto nitrocellulose and hybridised as above. Three positive plaques and two negative plaques were rescreened. Phage DNA was prepared and concentrated by polyethylene glycol (PEG) precipitation. Phage were resuspended in 50 μl of LTB, representing a 300 fold concentration. 2 μl of each suspension was spotted onto nitrocellulose and hybridised with [32 P] phosphorylated primer as described above. Hybridization confirmed the three positive plaques. The presence of the desired change was confirmed by DNA sequencing (Maxam and Gilbert). Single stranded phage DNA was prepared by established procedures. A short oligomer complementary to the sequence coding for amino acids 114 to 117 of the β sequence was prepared and phosphorylated using [γ-32 P] ATP as described previously. This was annealed to the phage DNA as described and short transcripts produced which were cleaved with Pst 1. A band of 213 b. corresponding to the specific priming product was isolated on a 7M urea, 8% Acrylamide 0.2% Bis-acrylamide 135 mM Tris-HCl pH 8.8, 45 mM Na borate, 1 mM EDTA gel. The fragment was electroeluted and the DNA sequenced using the Maxam and Gilbert technique. The DNA sequence confirmed the desired changes (FIGS. 5, 6). One clone was picked and tested to show that the gene product was still antivirally active as described earlier. This clone was used as a template for construction V.
Alteration of mutant human interferon β (mJA2) at amino acid 17 (cysteine) to serine to give mJA3 (See FIGS. 3 and 6 and Chart 3).
A hexadecamer of sequence 5'OH-CTGACTCTGAAAATTG3' (See FIG. 6) was constructed using phosphotriester chemistry, as for Construction III and IV. This sequence is complementary to the sequence 5'CAATTTTCAGTGTCAG3' which comprises nuclotides 39 to 54 inclusive of the IFN-β conding sequence (see published GB patent application No. 2,068,970) with the exception that the 6th nucleotide of the oligonucleotide, numbered from the 5' end,, corresponds to the complement of the desired mutation. Thus the desired change will be from T to A at nucleotide 49 of the coding sequence.
Formation of closed circular molecules and ligation was as described for constructions III and IV. Closed circular molecules were separated from incomplete products by electrophoresis through 1% low melting temperature agarose in 67.5 mM Tris-HCl pH8.8, 22.5 mM Na borate, 0.5 mM EDTA, 1 μg/ml ethidium bromide without prior S1 nuclease treatment. The region corresponding to closed circular double stranded full length molecules was visualised under long wave (366 nm) transillumination, cut from the gel and melted at 60° C. for 5 minutes. A volume corresponding to 0.3 pmole of double stranded product was used to transfect E.coli JM101 by established procedures. The transfected cells were plated out in top agar directly. After overnight growth, nitrocellulose replicates were taken and hybridized with [32 P] phosphorylated primer as described. The hybridization temperature was 42° C. for 36 hours. E.coli DNA (10 μg/ml, heat denatured) was included in the prehybridization solution. Finally, the filters were washed at 44° C. in 6 x SSC.
The 24 plaques which showed a signal above background were picked and grown for 6 hours in 1 ml YT broth containing 25 μof log phase E.coli JM101. The cells were removed by centrifugation and the phage in solution were concentrated 80 fold by PEG precipitation, to a final volume of 10 μl. 4 μl of each was spotted onto nitrocellulose and hybridized using the [32 P] primer. About 50% of the spots showed a signal greater than the background level. Four of the positive phage were further plaque purified. Phage was isolated from distinct, positively hybridizing plaques and the dsDNA replicative form (RF) prepared. The presence of the desired change was inferred by the appearance of a novel Hinf 1 site. The desired change, T to A, introduces the sequence 5' GAGTC which is a recognition sequence from the enzyme Hinf I. The presence of the site causes a Hinf I fragment of 197 base pairs in the parent RF to be cleaved to two molecules of 169 and 28 base pairs in the mutant RF.
Thus 5 μg of RF was digested with 12.5 units of Hinf I in a total volume of 500 ul of 6 mM Tris-HCl pH 7.5, 6 mM MgCl2, 6 mM 2-mercaptoethanol, 50 mM NaCl. for 16 hours at 37° C. The fragments were labelled at their 3' ends with [32 αP] dATP as the restriction enzyme cleaves between the G and A of the recognition site. Thus the reaction consisted of 0.4 pmole of DNA, 20 μCi [α-32 P] dATP (2000Ci/mmole) and 2 units of Klenow DNA polymerase I in 50 μl of 6 mM Tris-HCl pH 7.5, 50 mM NaCl, 6 mM MgCl2, 7 mM mercaptoethanol, at 25° C. for 60 minutes. The fragments were separated on 10% acylamide, 0.33% Bis-acrylamide, in 135 mM Tris-HCl pH 8.8, 45 mM Na borate, 1 mM EDTA. All of four plaques analysed showed the desired restriction pattern indicating the desired mutation had been induced.
Plasmid pMN39-1 consists of a deletion of 434 bp between the Bgl 11 and Bam HI site of plasmid pl-24. pMN39-1 therefore contains the natural HuIFN-β gene under trp attenuator minus control. The trp control region and 161 amino acids of the IFN-β, gene are present on a 621 bp EcoRI/BstEII fragment. This fragment can be removed and replaced by the analogous fragments from mJA1, mJA2 or mJA3 to produce pJA1, pJA2, pJA3 respectively. These constructs would thus represent the mutant HuIFN-β genes under trp control on a high copy number plasmid also coding for the β-lactamase gene so allowing selection by conferring ampicillin resistance on a transformed E.coli cell.
In order to achieve the subcloning RF from mJA1, mJA2, mJA3, and closed circular plasmid pMN39-1 were digested with the enzymes EcoRI and BstEII. One pmole each of mJA1, mJA2 and mJA3 were digested with 10 units of BstEII for 16 hours at 37° C. in a total volume for each reaction of 250 μl. 2 pmole of pMN39-1 was digested with 10 units of BstEII for 16 hours at 37° C. in a total volume of 250 μl.
The DNAs were precipitated and redigested with 20 units each of EcoRI for 16 hours at 37° C. in a total volume of 250 μl. The digestion products were precipitated and redissolved in 20 μl of 10 mM Tris-HCl pH 7.5, 1 mM EDTA. The products of the digestion of pMN39-1 were resolved on a 0.8% low melting temperature agarose gel in 67.5 mM Tris-HCl pH 8.8, 22.5 mM Na borate, 0.5 mM EDTA containing 1 μg/ml ethidium bromide. The 3303 bp EcoRl/BstEII fragment was cut from the gel and melted at 60° C.
The products of the digestion of mJA1, mJA2, mJA3 were resolved as above except that the agarose concentration was 2%. The 621 bp EcoRl/BstEII fragment from each digest was cut from the gel and melted at 60° C.
A volume calculated to contain 0.17 pmole of the 3.3 kb pMN 39-1 fragment was mixed with a volume calculated to contain 0.4 pmole of the 0.62 kb fragment for each of mJA1, mJA2, mJA3. The fragments were ligated with 1 unit of T4 ligase in a total volume of 200 μl of 65 mM Tris-HCl pH 7.5, 5 mM Mg Cl2 20 mM dithiothreitol, 1 mM ATP for 24 hours at 20° C.
Fifty μl of each ligation mix was used to transform 0.3 ml of competent E.coli K12 HB101 cells by established procedures.
Yields of interferon were obtained for constructions I-IV as indicators that the constructs still retained biological activity (Table 2). The A600 was 0.4 when induced and 1.0 when harvested. In all cases expression from the trp promoter could be detected in inducing conditions. However, yields ranged from 6×103 to 5.3×104 Iu./L for mJA3 (Construction II), 3.7×103 to 7.9×104 IU/L for mJA1 (Construction III), and 1.45×103 to 2×105 IU/L for mJA2 (Construction IV).
TABLE 2______________________________________Experiment        (Trivial Antiviral TitreNo.     Construct Name)    IU/L        Mean IU/L______________________________________1.                pMN39-1  2.3 × 10.sup.7                                  2.3 × 10.sup.7    VI.sup.   pJA1     4.8 × 10.sup.5                                  6.2 × 10.sup.5   VI        pJA1     7.6 × 10.sup.5    VII       pJA2     1.14 × 10.sup.6                                  1.2 × 10.sup.6   VII       pJA2     1.33 × 10.sup.62.                pMN39-1  3.5 · 10.sup.7   VII       pJA2     6.65 × 10.sup.63.                pMN39-1  6.35 × 10.sup.6   VII       pJA2     3 × 10.sup.5   VIII      pJA3     2.1 × 10.sup.6______________________________________
______________________________________SUMMARY OF TABLE 2Construct (Trivial Name)            Antiviral Titre (IU/L)______________________________________pMN39-1          2.14 × 10.sup.7pJA1              6.2 × 10.sup.5pJA2             2.35 × 10.sup.6pJA3              2.1 × 10.sup.6______________________________________
Step 2. Resuspend the pellet in 50 mM Tris-Cl pH 8.0 with three-fold w/w/ excess of SDS over protein. Add DTT to 100 mM and warm to 95° . Hold at 95° for five minutes.
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U.S. Classification 424/85.6, 930/142, 435/811, 530/351, 930/260
International Classification C07K14/52, C07K14/56, C12R1/19, A61K38/21, A61K38/00, C07K14/555, C12N15/09, C07K14/565, C12P21/02
Cooperative Classification Y10S930/142, Y10S930/26, Y10S435/811, C07K14/555, A61K38/00
European Classification C07K14/555
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