Source: https://patents.google.com/patent/US7297519
Timestamp: 2018-02-23 11:08:44
Document Index: 146568619

Matched Legal Cases: ['§1', '§1', '§1', '§1', '§1', '§ 1', '§ 1', '§1', '§ 1', '§ 1', '§1', '§1']

US7297519B2 - Polymerase compositions and uses thereof - Google Patents
US7297519B2
US7297519B2 US10319778 US31977802A US7297519B2 US 7297519 B2 US7297519 B2 US 7297519B2 US 10319778 US10319778 US 10319778 US 31977802 A US31977802 A US 31977802A US 7297519 B2 US7297519 B2 US 7297519B2
US10319778
US20060088822A1 (en )
Rebecca Lynn Mullinax
US10319778 1993-12-08 2002-12-13 Polymerase compositions and uses thereof Expired - Fee Related US7297519B2 (en)
US16429093 true 1993-12-08 1993-12-08
US08197791 US5556772A (en) 1993-12-08 1994-02-16 Polymerase compositions and uses thereof
US08529767 US7312052B1 (en) 1993-12-08 1995-09-18 Polymerase compositions and uses thereof
US10319778 US7297519B2 (en) 1993-12-08 2002-12-13 Polymerase compositions and uses thereof
US08529767 Continuation US7312052B1 (en) 1993-12-08 1995-09-18 Polymerase compositions and uses thereof
US20060088822A1 true US20060088822A1 (en) 2006-04-27
US7297519B2 true US7297519B2 (en) 2007-11-20
ID=36206595
US08529767 Expired - Fee Related US7312052B1 (en) 1993-12-08 1995-09-18 Polymerase compositions and uses thereof
US10319778 Expired - Fee Related US7297519B2 (en) 1993-12-08 2002-12-13 Polymerase compositions and uses thereof
US (2) US7312052B1 (en)
US20070212722A1 (en) * 1999-10-29 2007-09-13 Stratagene California Methods of detecting a target nucleic acid
EP0416755A1 (en) 1989-08-10 1991-03-13 Life Technologies Inc. Cloning and expression of T5 DNA polymerase reduced in 3'-to-5' exonuclease activity
US5352785A (en) 1993-03-30 1994-10-04 Minnesota Mining And Manufacturing Company Continuous process for purifying perfluorochemical compositions
US5422239A (en) 1980-09-19 1995-06-06 General Hospital Corporation Immunoassay utilizing monoclonal high affinity IgM antibodies
EP0386857A2 (en) 1987-01-14 1990-09-12 The President And Fellows Of Harvard College T7 DNA polymerase
Amendment filed May 10, 2004.
Anonymous, "Recombinant VentR(TM) DNA Polymerase," The Neb Transcript, 3(1):4 (1991).
Barnes, "PCR amplification of up to 35-kb DNA with high fidelity and high yield from lambda bacteriophage templates," Proc. Natl. Acad. Sci. USA, 91:2216-2220 (1994).
Barnes, W. "The fidelity of Taq polymerase catalyzing PCR is improved by an N-terminal deletion," Gene, 112: 29-35 (1992).
Cheng et al., "Effective amplification of long targets from cloned inserts and human genomic DNA," Proc. Natl. Acad. Sci. USA, 91:5695-5699 (1994).
Clark, J. M. et al. "Novel Blunt-End Addition Reactions Catalyzed by DNA Polymerase I of Escherichia coli," Journal of Molecular Biology, 198:123-127 (1987).
Clark, James M., "Novel Non-Templated Nucleotide Addition Reactions Catalyzed by Procaryotic and Eucaryotic DNA Polymerases,"0 Nucleic Acids Research, 16:9677-9686 (1988).
Complaint for Patent Infringement (without Exhibit A, a copy of U.S. Patent No. 5,556,772).
Complaint for Patent Infringement, with Exhibit A.
Complaint Under the Patent Law.
Decision Merging Reexamination Proceedings mailed Aug. 19, 2004.
Decision Returning Improper Paper (for U.S. Patent No. 5,556,772), mailed Jun. 12, 2003.
Decision Returning Improper Paper mailed Feb. 6, 2004.
Decision Returning Petition dated Feb. 5, 2004.
Decision Returning Petition mailed Jan. 30, 2004.
Declaration of Joseph A. Sorge and Rebecca L. Mullinax Under 37 C.F.R. §1.131from U.S. Appl. No. 08/197,791, submitted in Exhibit G of the Request for Reexamination Under 37 C.F.R. §1.510 (for U.S. Patent No. 5,556,772) filed by Kate Murashige on Mar. 20, 2003.
Defendant Stratagene's Reply in Support of Motion to Transfer, Dismiss or Stay, with Exhibits A and B.
Deng, Win Ping et al., "Site-Directed Mutagenesis of Virtually Any Plasmid by Eliminating a Unique Site," Analytical Biochemistry, 200:81-88 (1992).
Exhibits A-K.
Expert Opinion of Thomas G. Wiseman, Esq., with Exhibit A.
Expert Witness Report of John F. Witherspoon, with Exhibits A-C.
Fee Transmittal.
Fourth Supplemental Amendment filed May 27, 2003, in U.S. Appl. No. 08/529,767.
Hall, Len et al., "A Rapid and Efficient Method for Site-Directed MUtagenesis by PCR, Using Biotinylated Universal Primers and Streptavidin-Coated Magnetic Beads," Protein Engineering, 4(5):601.
Hemsley, Anne et al., "A Simple Method for Site-Directed Mutagenesis Using the Polymerase Chain Reaction," Nucleic Acids Research, 17(16):6545-6551 (1989).
Ho, Steffan N. et al. "Site-Directed Mutagenesis by Overlap Extension Using the Polymerase Chain Reaction," Gene, 77(1):51-59 (1989).
http://bio.takara.co.jp/BIO<SUB>-</SUB>EN/Catalog<SUB>-</SUB>d.asp?C<SUB>-</SUB>ID=C0173 (Dec. 19, 2002) (6 pages), submitted in Exhibit J of the Request for Reexamination Under 37 C.F.R. §1.510 (for U.S. Patent No. 5,556,772) filed by Kate Murashige on Mar. 20m 2003.
http://bio.takara.co.jp/BIO<SUB>-</SUB>EN/Catalog<SUB>-</SUB>d.asp?C<SUB>-</SUB>ID=C0174 (Dec. 19, 2002) (5 pages), submitted in Exhibit J of the Request for Reexamination Under 37 C.F.R. §1.510 (for U.S. Patent No. 5,556,772) filed by Kate Murasjige on Mar. 20, 2003.
http://www.Stratagene.com/displayProduct.asp?productid=104 (Dec. 19, 2002) (2 pages), submitted in Exhibit K of the Request for Reexamination Under 37 C.F.R. §1.1510 (for U.S. Patent No. 5,556,772) filed by Kate Murashige on Mar. 20, 2003.
Hu, Gengxi. "DNA Polymerase-Catalyzed Addition of Nontemplated Extra Nucleotides to the 3' End of a DNA Fragment," DNA and Cell Biology, 12(8):763-770 (1993).
Hultman, Thomas et al. "Solid Phase in vitro Mutagenesis Using Plasmid DNA template," Nucleic Acids Research, 18(17):5107-5111 (1990).
Information Disclosure Statement by Takara Bio Inc. as a Partial Assignee (Co-Owner) and Substitute Form PTO 1449, filed by Fish and Richardson P.C. on Jan. 22, 2004.
Invitrogen Corporation's Answer to Complaint for Patent Infringement and Counterclaim.
Jones, C. H. et al., "DNA mutagenesis and recombination," Nature, 344(6268):793-794 (1990).
Jones, Douglas H. et al., "Recombinant Circle PCR and Recombination PCR for Site-Specific Mutagenesis Without PCR Product Purification," Bio Techniques, 12(4):528-533 (1992).
Kunkel, Thomas A. "Rapid and efficient site-specific mutagenesis without phenotypic selection," Proceedings of the National Academy of Sciences, USA 82:488-492 (1985).
Landt, Olfert et al. "A general method for rapid site-directed mutagenesis using the polymerase chain reaction," Gene, 96:125-128 (1990).
Lawyer et al., "High-level expression, purification, and enzymatic characterization of full-length Thermus aquaticus DNA polymerase and a truncated form deficient in 5' to 3' exonuclease activity," PCR Methods and Applications, 2:275-287 (1993).
Lehninger et al., "Principles of Biochemistry, 2<SUP>nd </SUP>Edition," Worth Publishers, New York, NY, pp. 822-824 (1993).
Letter Concerning Request by Takara Bio Inc. for Leave to Participate in this Reexamination as a Partial Assignee (Co-owner) and other Takara Bio Inc. Submissions, with Exhibits 1 and 2.
Letter Submitting a Copy of Request by Takara Bio Inc. for Leave to Participate in this Reexamination as a Partial Assignee (Co-owner) and other Takara Bio Inc. Submissions (and Certificate of Service) filed Aug. 18, 2003.
Letter Submitting Copy of Request by Takara Bio Inc. for Leave to Participate in this Reexamination as a Partial Assignee (Co-owner) and other Takara Bio Inc. Submissions.
Livingston et al., "Affinity chromatography of avian type C viral reverse transcriptase: studies with Rous Sarcoma Virus transformed rat cells," Virology, 50:388-395 (1972).
Lundberg et al. "High-fidelity amplification using a thermostable DNA polymerase isolated from Pyrococcus furiosus," Gene, 108: 1-6 (1991).
Mattila et al., "Fidelity of DNA synthesis by the Thermococcis litoralis DNA polymerase-an extremely heat stable enzyme with proofreading activity," Nucleic Acids Research, 19(18):4967-4973 (1991).
Morrison et al., "Eukaryotic DNA polymerase amino acid sequence required for 3' -> 5' exonuclease activity," Proc. Natl. Acad. Sci. USA, 88:9473-9477 (1991).
Nassal, Michael et al., "PCR-based site-directed mutagenesis using primers with mismatched 3'-ends," Nucleic Acids Research, 18(10):3077-3078 (1990).
Nelson, Richard M. et al., "A General Method of Site-Specific Mutagenesis Using a Modification of the Thermus aquaticus Polymerase Chain Reaction," Analytical Biochemistry, 180:147-151 (1989).
New England BioLabs catalog on Deep Vent DNA<SUB>R</SUB>(TM) Polymerase, p. 61 (1992).
New England Biolabs catalog on Deep Vent<SUB>R </SUB>(R) polymerase, p. 62, submitted in Exhibit E of the Request for Reexamination Under 37 C.F.R. § 1.510 (for U.S. Patent No. 5,556,772) filed by Kate Murashige on Mar. 20, 2003, and alleged to be dated 1992 in that Request for Reeexamination.
Notice of Motion to Dismiss, Transfer or Stay Action, with Exhibits A-V.
Notice of Party with Financial Interest [Local Rule 40.2].
Notice of Reexamination Request Filing Date (for U.S. Patent No. 5,556,772), mailed Mar. 31, 2003.
Notice of Related Case.
Office Action in Ex Parte Reexamination mailed Dec. 20, 2004.
Office Action in Ex Parte Reexamination mailed Mar. 10, 2004.
Office Communication, mailed from the USPTO on Jul. 7, 2003, in U.S. Appl. No. 08/197,791, now U.S. Patent No. 5,556,772.
Official Communication mailed Jun. 3, 2004, in U.S. Appl. No. 08/529,767.
Ohler, Lynne D. et al., "Optimization of Long-distance PCR Using a Transposon-based Model System," PCR Methods & Applications, 2:51-59 (1992).
Order Granting Defendant's Motion to Transfer.
Order Granting/Denying Request for Ex Parte Reexamination (for U.S. Patent No. 5,556,772), mailed May 22, 2003.
Perrino et al., "Differential extension o f 3' mispairs is a major contribution to the high fidelity of calf thymus DNA polymerase-alpha," J. Biol. Chem., 264: 2898-2905 (1989).
Perrino et al., "Hydrolisis of 3'-terminal mispairs in vitro by the 3' -> 5' exonuclease of DNA polymerase sigma permits subsequent extension by DNA polymerase alpha," Biochemistry, 29: 5226-5231 (1990).
Perrino et al., "Proofreading by the epsilon subunit of Escherichia coli DNA polymerase III increases the fidelity of calf thymus DNA polymerase alpha," Proc. Natl. Acad. USA, 86: 3085-3088 (1989).
Plantiff Takara Bio, Inc.'s First Amended Complaint Under the Patent Law.
Preliminary Amendment filed Sep. 19, 2005, in U.S. Appl. No. 11/230,945, filed Sep. 19, 2005.
Reply to Owner's Statement Under 37 C.F.R. § 1.535, Transmittal Form, and Certificate of Service.
Request by Takara Bio Inc. for Leave to Participate in this Reexamination as a Partial Assignee (Co-owner) and other Takara Bio Inc. Submissions with Exhibits 1-7 and A-L.
Request for Additional Decision and Certificate of Service, filed by Morrison and Foerster on Jun. 10, 2003.
Request for Reexamination Under 37 C.F.R. §1.510 (for U.S. Patent No. 5,556,772) filed by Kate Murashige on Mar. 20, 2003.
Response with copy of Declaration of Joseph A. Sorge and Rebecca L. Mullinax Under 37 C.F.R. § 1.131 with Exhibits A & B; copy of Amendment Under 37 C.F.R. § 1.115, and copy of Eli Lilly v. Board of Regents of the University of Washington, filed Feb. 22, 2005.
Sears et al., "CircumVent(TM) thermal cycle sequencing and alternative manual and automated DNA sequencing protocols using the highly thermostable Vent<SUB>R</SUB>(TM) (exo-) DNA polymerase," BioTechniques, 13(4):626-633 (1992).
Stipulation Extending Time to File a Responsive Pleading; Order.
Stratagene product information, TaqPlus(R) Long and TaqPlus(R) Precision PCR Systems (2 pages), submitted in Exhibit K of the Request for Reexamination Under 37 C.F.R. §1.510 (for U.S. Patent No. 5,556,772) filed by Kate Murashige on Mar. 20, 2003.
Stratagene's Answer to Invitrogen Corporation's Counter Claim.
Stratagene's Answer to Plaintiff Takara Bio, Inc.'s First Amended Complaint Under the Patent Law.
Takara Bio, Inc.'s Memorandum of Points and Authorities in Opposition to Stratagene's Motion to Dismiss, Stay or Transfer, with Declaration of John B. Pegram and Exhibits 1-4, 6, 8, 9, and 11-32.
Takara's Motion to (1) Quash Service of Process, (2) Dismiss For Inadequate Service of Process, and (3) Dismiss for Lack of Personal Jurisdiction, or (4)-If This Court Has Jurisdiction-Transfer, with Exhibits 1-8.
Taylor, John W. et al. "The rapid generation of oligonucleotide-directed mutations at high frequency using phosphorothioate-modified DNA," Nucleic Acids Research, 13(24):8765-8775 (1985).
The American Heritage College Dictionary, Third Edition, Houghton Mifflin Company, p. 750, submitted in Exhibit H of the Request for Reexamination Under 37 C.F.R. §1.510 (for U.S. Patent No. 5,556,772) filed by Kate Murashige on Mar. 20, 2003.
The Stratagene Catalog, Gene Characterization Kits, p. 39 (1988).
Tindall et al., "Fidelity of DNA synthesis by the Thermus aquaticus DNA polymerase," Biochemistry, 27: 6008-6013 (1988).
U.S. District Court District of Maryland (Baltimore).
U.S. District Court, District of Maryland (Baltimore).
U.S. District Court, District of Maryland (Greenbelt).
U.S. District Court, Southern District of California (San Diego).
Uemori et al., "Organization and nucleotide sequence of the DNA polymerase gene from the archaeon Pyrococcus furiosis," Nucleic Acids Research, 21(2):259-265 (1993).
Vallete, Francois et al. "Construction of mutant and chimeric genes using the polymerase chain reaction," Nucleic Acids Research, 17(2):723-733 (1989).
Vandeyar, Mark A. et al. "A simple and rapid method for the selection of oligodeoxynucleotide-directed mutants," Gene, 65:129-133 (1989).
Watkins, Brynmor A. et al. "A Rapid Method for Site-Specific Mutagenesis Using Larger Plasmids as Templates," BioTechniques, 15(4):700-704 (1993).
Weiner, Michael P. et al. "A method for the site-directed mono- and multi-mutagenesis of double-stranded DNA," Gene, 126:35-41 (1993).
Yao, Zhengbin et al. "Site-directed Mutagenesis of Herpesvirus Glycoprotein Phosphorylation Sites by Recombination Polymerase Chain Reaction," PCR Methods and Applications, 1(3):205-207 (1992).
Zhu, Yu Sheng et al. "The use of Exonuclease III for Polymerase Chain Reaction Sterilization," Nucelic Acids Research, 19(9):2511 (1991).
US20070231815A1 (en) * 1999-10-29 2007-10-04 Stratagene California Compositions and kits for detection of a target nucleic acid
US7655405B2 (en) * 1999-10-29 2010-02-02 Hologic, Inc Compositions and kits for detection of a target nucleic acid
US7312052B1 (en) 2007-12-25 grant
US20060088822A1 (en) 2006-04-27 application
Huber et al. 1989 Human immunodeficiency virus 1 reverse transcriptase. Template binding, processivity, strand displacement synthesis, and template switching.
Kwok et al. 1994 A guide to the design and use of mismatched and degenerate