Datasets:
| PLINK v1.9.0-b.8 64-bit (22 Oct 2024) | |
| Options in effect: | |
| --bfile pruned_snps | |
| --out data_pca_pruned | |
| --pca 10 | |
| Hostname: user-H3C-UniServer-R5300-G6 | |
| Working directory: /home/wlg/MyFiles/Projects/EasyGS/Q009/answer | |
| Start time: Thu May 21 11:32:42 2026 | |
| Random number seed: 1779334362 | |
| 2063880 MB RAM detected; reserving 1031940 MB for main workspace. | |
| 1792 variants loaded from .bim file. | |
| 10 people (0 males, 0 females, 10 ambiguous) loaded from .fam. | |
| Ambiguous sex IDs written to data_pca_pruned.nosex . | |
| Using up to 223 threads (change this with --threads). | |
| Before main variant filters, 10 founders and 0 nonfounders present. | |
| Calculating allele frequencies... done. | |
| Total genotyping rate is exactly 1. | |
| 1792 variants and 10 people pass filters and QC. | |
| Note: No phenotypes present. | |
| Relationship matrix calculation complete. | |
| --pca: Results saved to data_pca_pruned.eigenval and data_pca_pruned.eigenvec . | |
| End time: Thu May 21 11:32:42 2026 | |