Datasets:
| PLINK v1.9.0-b.8 64-bit (22 Oct 2024) | |
| Options in effect: | |
| --double-id | |
| --geno 0.1 | |
| --hwe 1e-6 | |
| --make-bed | |
| --mind 0.05 | |
| --out num | |
| --recode A | |
| --vcf ../raw_snps.vcf | |
| Hostname: user-H3C-UniServer-R5300-G6 | |
| Working directory: /home/wlg/MyFiles/Projects/EasyGS/Q005/answer | |
| Start time: Wed May 20 20:32:30 2026 | |
| Random number seed: 1779280350 | |
| 2063880 MB RAM detected; reserving 1031940 MB for main workspace. | |
| --vcf: num-temporary.bed + num-temporary.bim + num-temporary.fam written. | |
| 40000 variants loaded from .bim file. | |
| 10 people (0 males, 0 females, 10 ambiguous) loaded from .fam. | |
| Ambiguous sex IDs written to num.nosex . | |
| 0 people removed due to missing genotype data (--mind). | |
| Using 1 thread (no multithreaded calculations invoked). | |
| Before main variant filters, 10 founders and 0 nonfounders present. | |
| Calculating allele frequencies... done. | |
| Total genotyping rate is 0.998638. | |
| 138 variants removed due to missing genotype data (--geno). | |
| --hwe: 0 variants removed due to Hardy-Weinberg exact test. | |
| 39862 variants and 10 people pass filters and QC. | |
| Note: No phenotypes present. | |
| --make-bed to num.bed + num.bim + num.fam ... done. | |
| --recode A to num.raw ... done. | |
| End time: Wed May 20 20:32:30 2026 | |