chrom
stringclasses 23
values | pos
int64 12k
248M
| ref
stringclasses 4
values | alt
stringclasses 4
values | pip
float64 0
1
| maf
float64 0.01
0.5
| consequence
stringclasses 16
values | label
bool 2
classes | tss_dist
int64 0
5.43M
| exon_dist
int64 0
5.43M
| match_group
stringlengths 13
39
|
---|---|---|---|---|---|---|---|---|---|---|
1 | 690,060 | A | C | 0.994126 | 0.03876 | intron_variant | true | 3,406 | 3,406 | intron_variant_0 |
1 | 722,408 | G | C | 0.002822 | 0.198113 | non_coding_transcript_exon_variant | false | 35,754 | 35,754 | non_coding_transcript_exon_variant_77 |
1 | 769,579 | C | T | 0.006539 | 0.046264 | non_coding_transcript_exon_variant | false | 82,925 | 82,925 | non_coding_transcript_exon_variant_7 |
1 | 841,166 | A | G | 1 | 0.243043 | intron_variant | true | 82,755 | 82,755 | intron_variant_1 |
1 | 917,495 | C | T | 0.90595 | 0.420124 | splice_polypyrimidine_tract_variant | true | 6,426 | 6,426 | splice_polypyrimidine_tract_variant_0 |
1 | 920,949 | C | G | 0.915184 | 0.169975 | non_coding_transcript_exon_variant | true | 2,972 | 2,972 | non_coding_transcript_exon_variant_0 |
1 | 946,870 | C | A | 1 | 0.036384 | non_coding_transcript_exon_variant | true | 7,595 | 325 | non_coding_transcript_exon_variant_1 |
1 | 954,496 | C | G | 0.996345 | 0.015265 | non_coding_transcript_exon_variant | true | 4,758 | 414 | non_coding_transcript_exon_variant_2 |
1 | 958,339 | G | A | 0.955819 | 0.092703 | non_coding_transcript_exon_variant | true | 915 | 588 | non_coding_transcript_exon_variant_3 |
1 | 973,443 | G | A | 0.99993 | 0.164754 | intron_variant | true | 67 | 55 | intron_variant_2 |
1 | 973,693 | C | T | 0.994036 | 0.36869 | intron_variant | true | 181 | 53 | intron_variant_3 |
1 | 975,555 | G | A | 0.906873 | 0.212625 | 3_prime_UTR_variant | true | 2,043 | 0 | 3_prime_UTR_variant_0 |
1 | 999,842 | C | A | 0.999064 | 0.480507 | missense_variant | true | 137 | 0 | missense_variant_0 |
1 | 1,042,813 | G | A | 1 | 0.148702 | intron_variant | true | 8,707 | 424 | intron_variant_4 |
1 | 1,049,886 | C | T | 0.971982 | 0.475837 | splice_polypyrimidine_tract_variant | true | 15,780 | 15 | splice_polypyrimidine_tract_variant_1 |
1 | 1,053,552 | G | C | 0.99861 | 0.210086 | non_coding_transcript_exon_variant | true | 19,446 | 59 | non_coding_transcript_exon_variant_4 |
1 | 1,057,980 | C | A | 0.991586 | 0.489207 | intergenic_variant | true | 16,324 | 1,862 | intergenic_variant_0 |
1 | 1,065,797 | G | C | 0.970337 | 0.311989 | intron_variant | true | 8,507 | 5,168 | intron_variant_5 |
1 | 1,067,054 | C | T | 0.918921 | 0.420029 | intron_variant | true | 7,250 | 3,911 | intron_variant_6 |
1 | 1,091,327 | C | A | 1 | 0.441883 | synonymous_variant | true | 845 | 0 | synonymous_variant_0 |
1 | 1,092,879 | C | T | 0.913843 | 0.138781 | intron_variant | true | 66 | 66 | intron_variant_7 |
1 | 1,101,987 | G | A | 0.006837 | 0.178571 | intron_variant | false | 4,138 | 3,967 | intron_variant_215 |
1 | 1,104,437 | A | G | 0.006837 | 0.178571 | non_coding_transcript_exon_variant | false | 1,688 | 1,517 | non_coding_transcript_exon_variant_64 |
1 | 1,105,560 | A | C | 0.006837 | 0.178571 | intron_variant | false | 565 | 394 | intron_variant_8 |
1 | 1,145,540 | G | A | 0.965705 | 0.050943 | intergenic_variant | true | 28,338 | 28,338 | intergenic_variant_1 |
1 | 1,172,462 | G | C | 0.989862 | 0.095881 | downstream_gene_variant | true | 1,416 | 1,416 | downstream_gene_variant_0 |
1 | 1,179,830 | G | A | 0.943782 | 0.122671 | 5_prime_UTR_variant | true | 133 | 0 | 5_prime_UTR_variant_0 |
1 | 1,182,895 | C | T | 0.999942 | 0.089351 | synonymous_variant | true | 3,198 | 0 | synonymous_variant_1 |
1 | 1,217,733 | G | A | 0.999944 | 0.121531 | synonymous_variant | true | 3,580 | 0 | synonymous_variant_2 |
1 | 1,218,703 | C | G | 0.999251 | 0.020186 | non_coding_transcript_exon_variant | true | 4,550 | 64 | non_coding_transcript_exon_variant_5 |
1 | 1,222,977 | A | G | 0.008725 | 0.121224 | intron_variant | false | 5,617 | 265 | intron_variant_150 |
1 | 1,227,792 | T | C | 0.008725 | 0.124353 | intron_variant | false | 802 | 674 | intron_variant_90 |
1 | 1,231,507 | T | C | 1 | 0.176727 | intron_variant | true | 492 | 383 | intron_variant_8 |
1 | 1,237,527 | C | T | 0.979284 | 0.042797 | intergenic_variant | true | 5,290 | 2,486 | intergenic_variant_2 |
1 | 1,252,487 | C | A | 0.006667 | 0.077982 | intergenic_variant | false | 5,765 | 1,423 | intergenic_variant_36 |
1 | 1,287,310 | C | T | 0.999926 | 0.046943 | intron_variant | true | 201 | 11 | intron_variant_9 |
1 | 1,287,315 | G | C | 0.999994 | 0.069876 | intron_variant | true | 206 | 16 | intron_variant_10 |
1 | 1,303,112 | G | A | 0.008426 | 0.131429 | intron_variant | false | 146 | 48 | intron_variant_294 |
1 | 1,327,586 | C | T | 0.0034 | 0.123732 | synonymous_variant | false | 2,345 | 0 | synonymous_variant_3 |
1 | 1,335,795 | A | G | 0.008914 | 0.040881 | 3_prime_UTR_variant | false | 3,625 | 0 | 3_prime_UTR_variant_29 |
1 | 1,365,514 | C | A | 0.006787 | 0.042453 | intergenic_variant | false | 3,737 | 3,737 | intergenic_variant_30 |
1 | 1,374,562 | C | T | 1 | 0.024259 | non_coding_transcript_exon_variant | true | 593 | 117 | non_coding_transcript_exon_variant_6 |
1 | 1,374,801 | A | G | 0.992443 | 0.071937 | splice_polypyrimidine_tract_variant | true | 354 | 0 | splice_polypyrimidine_tract_variant_2 |
1 | 1,397,612 | A | G | 0.959468 | 0.012422 | intron_variant | true | 1,342 | 619 | intron_variant_11 |
1 | 1,398,056 | C | A | 1 | 0.354701 | intron_variant | true | 898 | 175 | intron_variant_12 |
1 | 1,424,459 | C | A | 0.999999 | 0.048713 | intergenic_variant | true | 1,410 | 1,410 | intergenic_variant_3 |
1 | 1,451,550 | C | T | 0.981263 | 0.014785 | intron_variant | true | 1,636 | 494 | intron_variant_13 |
1 | 1,461,719 | G | A | 0.978513 | 0.053512 | intron_variant | true | 10,044 | 802 | intron_variant_14 |
1 | 1,490,122 | A | G | 0.99868 | 0.047321 | non_coding_transcript_exon_variant | true | 18,338 | 133 | non_coding_transcript_exon_variant_7 |
1 | 1,512,287 | A | G | 0.006865 | 0.011396 | missense_variant | false | 112 | 0 | missense_variant_29 |
1 | 1,609,890 | C | T | 0.940244 | 0.120433 | intergenic_variant | true | 5,608 | 5,608 | intergenic_variant_4 |
1 | 1,619,986 | T | C | 0.931465 | 0.262361 | intron_variant | true | 2,426 | 2,271 | intron_variant_15 |
1 | 1,624,723 | C | T | 0.922414 | 0.174702 | intron_variant | true | 921 | 70 | intron_variant_16 |
1 | 1,625,951 | G | A | 0.999233 | 0.388854 | non_coding_transcript_exon_variant | true | 2,149 | 298 | non_coding_transcript_exon_variant_8 |
1 | 1,627,156 | G | A | 0.990352 | 0.121787 | synonymous_variant | true | 1,331 | 0 | synonymous_variant_3 |
1 | 1,629,332 | G | T | 0.976229 | 0.319328 | intron_variant | true | 843 | 21 | intron_variant_17 |
1 | 1,677,707 | C | T | 0.9995 | 0.122004 | intron_variant | true | 15,015 | 861 | intron_variant_18 |
1 | 1,688,409 | C | G | 0.998277 | 0.397233 | intron_variant | true | 4,313 | 2,565 | intron_variant_19 |
1 | 1,689,221 | G | A | 0.999564 | 0.034989 | intron_variant | true | 3,501 | 1,753 | intron_variant_20 |
1 | 1,689,465 | A | G | 0.954751 | 0.383309 | intron_variant | true | 3,257 | 1,509 | intron_variant_21 |
1 | 1,704,310 | C | A | 0.99893 | 0.455333 | synonymous_variant | true | 11,515 | 0 | synonymous_variant_4 |
1 | 1,714,932 | G | T | 0.998758 | 0.45377 | intron_variant | true | 7,897 | 1,412 | intron_variant_22 |
1 | 1,730,405 | G | C | 0.003169 | 0.482269 | non_coding_transcript_exon_variant | false | 6,048 | 6,048 | non_coding_transcript_exon_variant_74 |
1 | 1,744,499 | C | T | 0.967284 | 0.432353 | non_coding_transcript_exon_variant | true | 12,767 | 6,731 | non_coding_transcript_exon_variant_9 |
1 | 1,756,043 | G | T | 0.002952 | 0.433556 | non_coding_transcript_exon_variant | false | 1,223 | 213 | non_coding_transcript_exon_variant_9 |
1 | 1,756,945 | G | A | 0.998927 | 0.070958 | non_coding_transcript_exon_variant | true | 321 | 63 | non_coding_transcript_exon_variant_10 |
1 | 1,825,898 | G | A | 0.982347 | 0.010448 | intron_variant | true | 6,385 | 399 | intron_variant_23 |
1 | 1,916,092 | C | T | 0.008632 | 0.070492 | non_coding_transcript_exon_variant | false | 832 | 347 | non_coding_transcript_exon_variant_10 |
1 | 1,918,989 | A | G | 0.999994 | 0.451465 | 3_prime_UTR_variant | true | 192 | 54 | 3_prime_UTR_variant_1 |
1 | 1,944,419 | C | G | 0.008412 | 0.462857 | missense_variant | false | 25,140 | 0 | missense_variant_38 |
1 | 1,958,061 | C | T | 0.979007 | 0.071225 | intron_variant | true | 32,866 | 1,057 | intron_variant_24 |
1 | 2,065,711 | G | A | 0.987011 | 0.239726 | intron_variant | true | 7,749 | 6,120 | intron_variant_25 |
1 | 2,107,385 | G | A | 0.999994 | 0.480209 | intron_variant | true | 2,646 | 2,490 | intron_variant_26 |
1 | 2,145,827 | G | A | 0.005624 | 0.086124 | intron_variant | false | 10,837 | 198 | intron_variant_321 |
1 | 2,146,811 | T | G | 0.955567 | 0.021298 | intron_variant | true | 11,821 | 703 | intron_variant_27 |
1 | 2,156,665 | A | G | 0.002861 | 0.243207 | non_coding_transcript_exon_variant | false | 21,675 | 573 | non_coding_transcript_exon_variant_62 |
1 | 2,181,827 | G | A | 0.905796 | 0.107332 | splice_polypyrimidine_tract_variant | true | 12,919 | 2,632 | splice_polypyrimidine_tract_variant_3 |
1 | 2,189,679 | C | T | 1 | 0.368579 | 3_prime_UTR_variant | true | 5,067 | 0 | 3_prime_UTR_variant_2 |
1 | 2,207,240 | A | G | 0.005074 | 0.406832 | intron_variant | false | 12,465 | 12,465 | intron_variant_41 |
1 | 2,377,643 | T | G | 0.98177 | 0.465839 | 3_prime_UTR_variant | true | 10,692 | 0 | 3_prime_UTR_variant_3 |
1 | 2,379,983 | T | C | 0.915597 | 0.017143 | intron_variant | true | 8,352 | 756 | intron_variant_28 |
1 | 2,384,278 | A | G | 0.991135 | 0.43325 | intron_variant | true | 4,057 | 698 | intron_variant_29 |
1 | 2,392,128 | T | C | 0.997265 | 0.435031 | intron_variant | true | 238 | 170 | intron_variant_30 |
1 | 2,394,570 | G | A | 1 | 0.43277 | 5_prime_UTR_variant | true | 565 | 0 | 5_prime_UTR_variant_1 |
1 | 2,396,376 | C | T | 0.999923 | 0.426638 | intron_variant | true | 2,371 | 505 | intron_variant_31 |
1 | 2,479,350 | C | T | 0.968757 | 0.39743 | non_coding_transcript_exon_variant | true | 536 | 382 | non_coding_transcript_exon_variant_11 |
1 | 2,564,775 | C | T | 0.004505 | 0.472826 | intron_variant | false | 4,093 | 276 | intron_variant_286 |
1 | 2,567,179 | G | T | 0.00609 | 0.455163 | intron_variant | false | 6,497 | 1,797 | intron_variant_22 |
1 | 2,568,341 | G | A | 0.006588 | 0.455163 | intron_variant | false | 7,659 | 2,959 | intron_variant_233 |
1 | 2,800,059 | C | T | 0.008263 | 0.341761 | missense_variant | false | 1,632 | 0 | missense_variant_47 |
1 | 3,022,133 | T | G | 0.008517 | 0.158951 | synonymous_variant | false | 666 | 0 | synonymous_variant_25 |
1 | 3,028,107 | T | A | 0.007099 | 0.179443 | intergenic_variant | false | 6,640 | 5,204 | intergenic_variant_67 |
1 | 3,060,252 | T | C | 0.009629 | 0.203833 | non_coding_transcript_exon_variant | false | 8,914 | 8,914 | non_coding_transcript_exon_variant_104 |
1 | 3,061,479 | G | C | 0.999398 | 0.41753 | non_coding_transcript_exon_variant | true | 7,687 | 7,687 | non_coding_transcript_exon_variant_12 |
1 | 3,063,362 | C | T | 1 | 0.016397 | non_coding_transcript_exon_variant | true | 5,804 | 5,804 | non_coding_transcript_exon_variant_13 |
1 | 3,064,014 | C | T | 0.006839 | 0.143728 | non_coding_transcript_exon_variant | false | 5,152 | 5,152 | non_coding_transcript_exon_variant_48 |
1 | 3,096,416 | A | G | 0.967549 | 0.22093 | intron_variant | true | 27,205 | 27,120 | intron_variant_32 |
1 | 3,467,334 | A | G | 0.999232 | 0.098661 | synonymous_variant | true | 363 | 0 | synonymous_variant_5 |
1 | 3,478,610 | C | A | 0.00963 | 0.06383 | splice_region_variant | false | 6,986 | 0 | splice_region_variant_11 |
1 | 3,496,950 | C | G | 1 | 0.045882 | intron_variant | true | 233 | 36 | intron_variant_33 |
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