Patent Publication Number: US-2022227848-A1

Title: Type XXIII Collagen Assay

Description:
FIELD OF THE INVENTION 
     The present invention relates to monoclonal antibodies that target collagen type XXIII, and to immunoassays and kits employing said antibodies. 
     INTRODUCTION 
     Crohn&#39;s disease (CD) and ulcerative colitis (UC) are the two main gastrointestinal disorders of inflammatory bowel disease (IBD) with similar symptoms, such as heightened inflammatory response and structural damage of the intestine. CD can affect the entire gastrointestinal tract, while UC is primarily limited in the colonic mucosa [1]. The cause of IBD is not fully understood, but it is believed to have a genetic basis and an abnormal response of the immune system to environmental factors [2]. 
     The epithelium of healthy gut is covered by a single layer of intestinal epithelial cells which form the protective barrier against bacteria and other foreign substances including antigens and toxins, and only have selective permeability of dietary nutrients [3,4]. The epithelium is important to maintain the health of the gut. However, in both CD and UC, the intestinal permeability is impaired which results in invasion of numerous of bacteria from the lumen into the intestinal tissue and increased influx of immune cells from the blood stream into the tissue [5,6] which leads to chronic inflammation of the gastrointestinal tract in IBD patients [7]. The tight link between the intestinal epithelial cells is regulated mainly by junctional complexes, which is composed of tight junctions, adherence junctions, and desmosomes [6]. Many studies have shown that some of the junction proteins were significantly down-regulated in IBD inflamed intestine tissue [8-11], which could be the main reason for intestine permeability loss in IBD. 
     Type XXIII collagen, a member of type II transmembrane protein, was firstly discovered in 2003 by Jacqueline Banyard et al in rat metastatic tumor cells [12]. In human non-small lung cancer cell line and clear cell renal cell carcinoma cell line, type XXIII collagen was found to be related to cell adhesion and metastasis [13,14]. Type XXIII collagen knockout in such cell lines resulted in altered expression of cell adhesion molecules and impaired cell adhesion [13,14], which indicated type XXIII collagen might be a regulator of cell adhesion. Type XXIII collagen is not only expressed in cancer cells. In embryonic mouse intestinal section staining, it was found to be expressed by the epithelial surface of intestines, suggesting it may have important role for cell-cell interactions [15]. 
     Type XXIII collagen consists of a short cytoplasmic domain, a membrane-spanning domain, and a long ectodomain [12]. The ectodomain has several collagenous domains and interrupted by short non-collagenous domains [12]. The newly synthesized type XXIII collagen can be transported to cell surface as a transmembrane protein or cleaved intracellularly by furin and the ectodomain released to the extracellular matrix (ECM) [16]. However, the function of the cleavage is not yet understood. Studies have shown that type XXIII was up-regulated in a series of cancers [17-19] and could be used as potential biomarker in prostate cancer [18], non-small cell lung cancer [17] and clear cell renal cell carcinoma [14]. However, the use of type XXIII collagen as a biomarker in other diseases has not yet been defined. 
     U.S. Pat. No. 7,993,863 B (Zetter et al) describes collagen like gene (CLG) products which are expressed in human prostate cancer and breast cancer cells lines but not in normal adult, placenta, lung, liver, skeletal muscle, kidney or pancreas tissues. A C-terminal non-collagenous region with the sequence LDQPCPVGPDGLPVPGCWHK (denoted SEQ ID No.14) is also described. The authors note that this sequence has a high identity with transmembrane collagens XMII and XXV, and so concluded that it is potentially a bad epitope. 
     There is evidence that shows that active IBD patients have increased intestinal permeability compared to the inactive disease [20]. The junction/adhesion proteins, such as E-cadherin, β-catenin, are dramatically down-regulated in active inflamed tissue of IBD patients [8]. Therefore, methods for assessment of the intestinal permeability can be used to evaluate the disease burden [5]. However, there are only a few non-invasive biomarkers available. Fecal calprotectin, a protein which is mainly expressed by neutrophils, is the most promising biomarker in IBD. It correlates with endoscopic disease activity [21], can predict relapse [22] and monitor the response to the treatment [23]. But fecal calprotectin only measures inflammation in intestines, and not tissue-damage directly, as calprotectin is a small calcium-binding protein found mostly in neutrophilic granulocytes. Claudin-3, a tight junction protein, can be measured in urine and potentially reflect the tight junction loss [24]. There is only limited information on this biomarker, and it needs further investigation in human. Therefore, there is still huge need for non-invasive biomarkers for intestinal permeability assessment in IBD. 
     SUMMARY OF THE INVENTION 
     Since type XXIII collagen is expressed in the epithelial layer of intestine, it may be cleaved from the cell surface during epithelial damage in IBD. Moreover, as type XXIII collagen plays an important role in cell adhesion, the levels may be modulated and contribute to cell adhesive change in IBD and so can be used as a biomarker. 
     The present inventors have developed a monoclonal antibody that specifically recognises the ectodomain of Type XXIII collagen, specifically the C terminus of the al chain; and an immunoassay, in particular an enzyme-linked immunosorbent assay (ELISA) to detect the ectodomain of type XXIII collagen in a biofluid sample. The inventors have determined that Type XXIII collagen can be used as a biomarker of changes in cell adhesion and provide novel diagnostic information in patients with inflammatory bowel disease such as Crohn&#39;s disease (CD) and ulcerative colitis (UC). 
     Accordingly, in a first aspect the present invention relates to a monoclonal antibody that specifically recognises and binds to the C-terminus of type XXIII collagen al chain (also referred to herein as the target peptide), the C-terminus having the amino acid sequence GLPVPGCWHK (SEQ. ID No. 1) (also referred to herein as the target sequence). 
     Preferably, the monoclonal antibody is a monoclonal antibody that has been raised against a synthetic peptide having the C-terminus amino acid sequence GLPVPGCWHK (SEQ. ID No. 1). The synthetic peptide used to raise the antibody may be a synthetic peptide linked at its N-terminus to a carrier protein. Exemplary carrier proteins include proteins such as, but not limited to, keyhole limpet hemocyanin (KLH). The synthetic peptide may be linked to the carrier protein via any suitable linkage, which may include one or more additional amino acid residues at the N-terminus of the peptide. The monoclonal antibody may have been raised via suitable techniques known those skilled in the art such as, but not limited to, immunizing a mouse or other mammal, isolating and fusing spleen cells from the immunized mammal with hybridoma cells, and then culturing the resultant hybridoma cells to secure monoclonal growth. 
     In a preferred embodiment, the monoclonal antibody does not specifically recognise or bind to a peptide having the C-terminus amino acid sequence GLPVPGCWHKX (SEQ. ID No. 2), wherein X represents any amino acid. Thus, the monoclonal antibody preferably does not specifically recognise or bind to elongated variants of the target peptide in which the target amino acid sequence has been extended at the C-terminus by one or more amino acids. 
     In a preferred embodiment, the monoclonal antibody does not specifically recognise or bind to a peptide having the C-terminus amino acid sequence GLPVPGCWH (SEQ. ID No. 3). Thus, the monoclonal antibody preferably does not specifically recognise or bind to shortened variants of the target peptide in which the target amino acid sequence has been truncated at the C-terminus by one or more amino acids. 
     In a preferred embodiment, the monoclonal antibody does not specifically recognise or bind to a peptide having the C-terminus amino acid sequence GLPVQGCWNK (SEQ. ID No. 4). Thus, the monoclonal antibody preferably does not specifically recognise or bind to a peptide from type XIII collagen. 
     In a preferred embodiment, the monoclonal antibody does not specifically recognise or bind to a peptide having the C-terminus amino acid sequence GLPMPGCWQK (SEQ. ID No. 5). Thus, the monoclonal antibody preferably does not specifically recognise or bind to a peptide from type XXV collagen. 
     The monoclonal antibody or fragment thereof may preferably comprise one or more complementarity-determining regions (CDRs) selected from: 
     
       
         
           
               
               
            
               
                   
                 CDR-H1: 
               
               
                   
                 (SEQ. ID No. 6) 
               
               
                   
                 SYAMS 
               
               
                   
                   
               
               
                   
                 CDR-H2: 
               
               
                   
                 (SEQ. ID No. 7) 
               
               
                   
                 SISTAGRTYYPDTVR 
               
               
                   
                   
               
               
                   
                 CDR-H3: 
               
               
                   
                 (SEQ. ID No. 8) 
               
               
                   
                 PDYDYDGYIN 
               
               
                   
                   
               
               
                   
                 CDR-L1: 
               
               
                   
                 (SEQ. ID No. 9) 
               
               
                   
                 RSSKSLLHSNGVTYLY 
               
               
                   
                   
               
               
                   
                 CDR-L2: 
               
               
                   
                 (SEQ. ID No. 10) 
               
               
                   
                 QMSNLAS 
               
               
                   
                 and 
               
               
                   
                   
               
               
                   
                 CDR-L3: 
               
               
                   
                 (SEQ. ID No. 11) 
               
               
                   
                 AQNLELPLT 
               
            
           
         
       
     
     Preferably the antibody or fragment thereof comprises at least 2, 3, 4, 5 or 6 of the above listed CDR sequences. 
     Preferably the monoclonal antibody or fragment thereof has a light chain variable region comprising the CDR sequences 
     
       
         
           
               
               
            
               
                   
                 CDR-L1: 
               
               
                   
                 (SEQ. ID No. 9) 
               
               
                   
                 RSSKSLLHSNGVTYLY 
               
               
                   
                   
               
               
                   
                 CDR-L2: 
               
               
                   
                 (SEQ. ID No. 10) 
               
               
                   
                 QMSNLAS 
               
               
                   
                 and 
               
               
                   
                   
               
               
                   
                 CDR-L3: 
               
               
                   
                 (SEQ. ID No. 11) 
               
               
                   
                 AQNLELPLT 
               
            
           
         
       
     
     Preferably the monoclonal antibody or fragment thereof has a light chain that comprises framework sequences between the CDRs, wherein said framework sequences are substantially identical or substantially similar to the framework sequences between the CDRs in the light chain sequence below (in which the CDRs are shown in bold and underlined, and the framework sequences are shown in italics) 
     
       
         
           
               
            
               
                 (SEQ ID No. 12) 
               
               
                 
                   
                     RSSKSLLHSNGVTYLY 
                   
                   WYLQKPGQSPQLLIY 
                   
                     QMSNLAS 
                   
                   GVPDRFSSS 
                 
               
               
                   
               
               
                   GSGTDFTLRISRVEAEDVGVYYC     AQNLELPLT     FGAGTKLELK . 
               
            
           
         
       
     
     Preferably the monoclonal antibody or fragment thereof has a heavy chain variable region comprising the CDR sequences 
     
       
         
           
               
               
            
               
                   
                 CDR-H1: 
               
               
                   
                 (SEQ. ID No. 6) 
               
               
                   
                 SYAMS 
               
               
                   
                   
               
               
                   
                 CDR-H2: 
               
               
                   
                 (SEQ. ID No. 7) 
               
               
                   
                 SISTAGRTYYPDTVR 
               
               
                   
                   
               
               
                   
                 CDR-H3: 
               
               
                   
                 (SEQ. ID No. 8) 
               
               
                   
                 PDYDYDGYIN. 
               
            
           
         
       
     
     Preferably the monoclonal antibody or fragment thereof has a heavy chain that comprises framework sequences between the CDRs, wherein said framework sequences are substantially identical or substantially similar to the framework sequences between the CDRs in the light chain sequence below (in which the CDRs are shown in bold and underlined, and the framework sequences are shown in italics) 
     
       
         
           
               
            
               
                 (SEQ. ID No. 13) 
               
               
                   SYAMS W VRQTPEKRLAWVA     SISTAGRTYYPDTVRG     RITISRDNARNI   
               
               
                   
               
               
                   LYLQMSSLRSEDTAIYYCAR     PDYDYDGYIN   W GQGTLVTVSA   
               
            
           
         
       
     
     As used herein, the framework amino acid sequences between the CDRs of an antibody are substantially identical or substantially similar to the framework amino acid sequences between the CDRs of another antibody if they have at least 70%, 80%, 90% or at least 95% similarity or identity. The similar or identical amino acids may be contiguous or non-contiguous. 
     The framework sequences may contain one or more amino acid substitutions, insertions and/or deletions. Amino acid substitutions may be conservative, by which it is meant the substituted amino acid has similar chemical properties to the original amino acid. A skilled person would understand which amino acids share similar chemical properties. For example, the following groups of amino acids share similar chemical properties such as size, charge and polarity: Group 1 Ala, Ser, Thr, Pro, Gly; Group 2 Asp, Asn, Glu, Gln; Group 3 His, Arg, Lys; Group 4 Met, Leu, Ile, Val, Cys; Group 5 Phe Thy Trp. 
     A program such as the CLUSTAL program to can be used to compare amino acid sequences. This program compares amino acid sequences and finds the optimal alignment by inserting spaces in either sequence as appropriate. It is possible to calculate amino acid identity or similarity (identity plus conservation of amino acid type) for an optimal alignment. A program like BLASTx will align the longest stretch of similar sequences and assign a value to the fit. It is thus possible to obtain a comparison where several regions of similarity are found, each having a different score. Both types of analysis are contemplated in the present invention. Identity or similarity is preferably calculated over the entire length of the framework sequences. 
     In certain preferred embodiments, the monoclonal antibody or fragment thereof may comprise the light chain variable region sequence: 
                    (SEQ. ID No 14)         DIVMTQAAFSNPVTLGTSAYISC     RSSKSLLHSNGVTYLY     WYLQKPGQ                   SPQLLIY     QMSNLAS     GVPDRFSSSGSGTDFTLRISRVEAEDVGVYYC     A                       QNLELPLT     FGAGTKLELK              
and/or the heavy chain variable region sequence:
 
                    (SEQ. ID No. 15)         VKLVESGGGLVKPGGSLKLSCAASGFTFS   SYAMS W VRQTPEKRLAWV                   A     SISTAGRTYYPDTVRG     RITISRDNARNILYLQMSSLRSEDTAIYYC                   AR     PDYDYDGYIN   W GQGTLVTVSA              
(CDRs bold and underlined; Framework sequences in italics)
 
     In a second aspect, the present invention relates to a method of immunoassay for detecting type XXIII collagen in a human biofluid sample, said method comprising contacting a human biofluid sample with a monoclonal antibody according to the first aspect of the invention, and detecting binding between the monoclonal antibody and peptides in the sample. 
     Preferably, the detection is quantitative. Thus the method may comprise detecting and determining the amount of binding between the monoclonal antibody and peptides in the sample. 
     Preferably, the immunoassay is a competitive immunoassay. 
     Preferably, the immunoassay is an enzyme-linked immunosorbent assay (ELISA). Preferably the ELISA is a competitive ELISA. 
     The human biofluid sample may be for instance blood, serum, plasma or urine. Preferably the sample is serum or plasma. 
     The human biofluid sample may be a sample from a human patient having medical signs or symptoms indicative of inflammatory bowel disease. Preferably the biofluid sample is a sample from a human patient having medical signs or symptoms indicative of Crohn&#39;s disease (CD) or ulcerative colitis (UC). Preferably the biofluid sample is a sample from a human patient having medical signs or symptoms indicative of active inflammatory bowel disease, for example active Crohn&#39;s disease (CD) or active ulcerative colitis (UC). 
     The method may be an immunoassay method for diagnosing and/or monitoring and/or assessing the likelihood of inflammatory bowel disease in a patient, the method comprising contacting a biofluid sample obtained from said patient with the monoclonal antibody, detecting and determining the amount of binding between the monoclonal antibody and peptides in the sample, and correlating said amount of binding with values associated with normal healthy subjects and/or values associated with known disease severity and/or values obtained from said patient at a previous time point. Preferably the inflammatory bowel disease is Crohn&#39;s disease or ulcerative colitis. Preferably the inflammatory bowel disease is active inflammatory bowel disease, for example active Crohn&#39;s disease (CD) or active ulcerative colitis (UC). 
     In a third aspect, the present invention relates to an assay kit comprising a monoclonal antibody according to the first aspect of the invention, and at least one of:
         a streptavidin coated well plate;   a N-terminal biotinylated peptide having the C-terminus amino acid sequence GLPVPGCWHK (SEQ. ID No. 1); and   a calibrator peptide having the C-terminus amino acid sequence GLPVPGCWHK (SEQ. ID No. 1).       

     The kit may be for use in diagnosing or predicting the risk of inflammatory bowel disease, preferably in conjunction with the methods according to the second aspect of the invention. Preferably the inflammatory bowel disease is Crohn&#39;s disease or ulcerative colitis. The inflammatory bowel disease is preferably active inflammatory bowel disease e.g. active Crohn&#39;s disease or active ulcerative colitis. 
     Definitions 
     As used herein, the terms “peptide” and “polypeptide” are used synonymously. 
     As used herein the term “monoclonal antibody” refers to both whole antibodies and to fragments thereof that retain the binding specificity of the whole antibody, such as for example a Fab fragment, Fv fragment, or other such fragments known to those skilled in the art. Antibodies which retain the same binding specificity may contain the same complementarity-determining regions (CDR). The CDR of an antibody can be determined using methods know in the art such as that described by Kabat et al.[28] 
     Antibodies can be generated from B cell clones as described in the examples. The isotype of the antibody can be determined by ELISA specific for human IgM, IgG or IgA isotype, or human IgG1, IgG2, IgG3 or IgG4 subclasses. Other suitable methods can be used to identify the isotype. 
     The amino acid sequence of the antibodies generated can be determined using standard techniques. For example RNA can be isolated from the cells, and used to generate cDNA by reverse transcription. The cDNA is then subjected to PCR using primers which amplify the heavy and light chains of the antibody. For example primers specific for the leader sequence for all VH (variable heavy chain) sequences can be used together with primers that bind to a sequence located in the constant region of the isotype which has been previously determined. The light chain can be amplified using primers which bind to the 3′ end of the Kappa or Lamda chain together with primers which anneal to the V kappa or V lambda leader sequence. The full length heavy and light chains can be generated and sequenced. 
     As used herein the term “C-terminus” refers to the extremity of a polypeptide, i.e. at the C-terminal end of the polypeptide, and is not to be construed as meaning in the general direction thereof. Likewise, the term “N-terminus” refers to the extremity of a polypeptide, i.e. at the N-terminal end of the polypeptide, and is not to be construed as meaning in the general direction thereof. 
     As used herein the term, the term “competitive immunoassay” refers to an immunoassay in which the target peptide present in a sample (if any) competes with known amount of target of peptide (which for example is bound to a fixed substrate or is labelled) for to binding an antibody, which is a technique known to those skilled in the art. 
     As used herein the term “ELISA” (enzyme-linked immunosorbent assay) refers to an immunoassay in which the target peptide present in a sample (if any) is detected using antibodies linked to an enzyme, such as horseradish peroxidase or alkaline phosphatase. The activity of the enzyme is then assessed by incubation with a substrate generating a measurable product. The presence and/or amount of target peptide in a sample can thereby be detected and/or quantified. ELISA is a technique known to those skilled in the art. 
     As used herein the term “amount of binding” refers to the quantification of binding between monoclonal antibody and target peptide, which said quantification is determined by comparing the measured values of target peptide in the biofluid samples against a calibration curve, wherein the calibration curve is produced using standard samples of known concentration of the target peptide. In the specific assay disclosed herein which measures in biofluids target peptides having the C-terminus amino acid sequence GLPVPGCWHK (SEQ. ID No. 1), the calibration curve is produced using standard samples of known concentration of a calibration peptide having the C-terminus amino acid sequence GLPVPGCWHK (SEQ. ID No. 1, (and which may in particular consist of the amino acid sequence GLPVPGCWHK (SEQ. ID No. 1)). The values measured in the biofluid samples are compared to the calibration curve to determine the actual quantity of target peptide in the sample. 
     As used herein, the term “PRO-C23” refers to type XXIII collagen ectodomain having the C-terminal amino acid sequence GLPVPGCWHK (SEQ. ID No. 1). 
    
    
     
       FIGURES 
         FIG. 1 : PRO-C23 antibody 10F6 specificity. A) Sequence alignment for C-terminus of type XIII, XXIII and XXV collagens. The antibody recognizes the residues from 531 to 540 of type XXIII collagen. B) PRO-C23 antibody specificity towards different peptides. Reactivity to the selection peptide (GLPVPGCWHK (SEQ. ID No. 1)), the elongated peptide (GLPVPGCWHKA (SEQ. ID No. 16)), the truncated peptide (GLPVPGCWH), peptide from type XIII collagen (GLPVQGCWNK (SEQ. ID. No. 4)) and peptide from type XXV collagen (GLPMPGCWQK (SEQ. ID No. 5)) was tested in the PRO-C23 assay. C) Western blot results of recombinant type XXIII collagen using 10F6 as primary antibody. 
         FIG. 2 : Correlation of PRO-C23 levels in three kinds of plasma and serum (N=16) 
         FIG. 3 : PRO-C23 levels in rat DSS model. A) PRO-C23 serum levels in control rats (n=8) and DSS rats with DAI≥5 (n=8). B) The serum levels of PRO-C23 increased upon induction of colitis and returned towards baseline at reversal of the intestinal inflammation. Data are presented as median±95% confidence interval. * Asterisk (*) represent statistical difference. * P&lt;0.05. 
         FIG. 4 : PRO-C23 levels in human cohort 1. Data are presented as median±95% confidence interval. * Asterisk (*) represent statistical difference. * P&lt;0.05. 
         FIG. 5 : PRO-C23 levels in human cohort 2 (CD) and 3 (UC). Data are presented as median±95% confidence interval. * Asterisks (*) represent statistical differences. *(p&lt;0.05) ** (p&lt;0.01)*** (p&lt;0.001) 
     
    
    
     EXAMPLES 
     Various embodiments are described and disclosed in the following Examples, which are set forth to aid in the understanding of the present disclosure and should not be construed to limit in any way the scope of the invention as defined in the claims which follow thereafter. The following examples are put forth so as to provide those of ordinary skill in the art with a complete disclosure and description of how to make and use the described embodiments, and are not intended to limit the scope of the present disclosure nor are they intended to represent that the experiments below are all or the only experiments performed. Efforts have been made to ensure accuracy with respect to numbers used (e.g. amounts, temperature, etc.) but some experimental errors and deviations should be accounted for. Unless indicated otherwise, parts are parts by weight, molecular weight is weight average molecular weight, temperature is in degrees Centigrade, and pressure is at or near atmospheric. 
     Methods 
     Antibody Development for PRO-C23 
     The last 10 amino acids of the type XXIII collagen al chain ( 531 ‘GLPVPGCWHK’ 540 , (SEQ. ID No. 1) Genscript, USA) were used as the immunogenic peptide to generate specific monoclonal antibodies. 4-6-week-old Balb/C mice were immunized subcutaneously with 100 μg of the immunogen (KLH-CGG-GLPVPGCWHK (SEQ. ID No. 1) emulsified with Stimmune adjuvant (Thermo Fisher, USA). Consecutive immunizations were performed at 2-week intervals. The mouse with highest antiserum titer and the best peptide reactivity was selected for fusion. Mouse spleen cells were fused with SP2/0 myeloma cells. The fusion cells were raised in 96-well plates and incubated in the CO2-incubator. Cell lines specific to the selection peptide and without cross-reactivity to neither elongated peptide (GLPVPGCWHKA (SEQ. ID No. 16)), truncated peptide (GLPVPGCWH) nor deselection peptides (GLPVQGCWNK, (SEQ. ID. No. 4) type XIII collagen, GLPMPGCWQK (SEQ. ID No. 5), type XXV collagen) (Genscript, USA) were selected and subcloned. At last, the antibodies were purified using an IgG column (GE health, USA). 
     The antibodies generated were sequenced and the CDRs determined. 
     The sequence of the chains are as follows: 
     CDRs underlined and in bold 
     Constant Region Italic: 
       
     
       
         
           
               
            
               
                 Heavy chain: Amino acid sequence (454 aa) 
               
               
                 (SEQ. ID No. 17) 
               
               
                 EVKLVESGGGLVKPGGSLKLSCAASGFTFS SYAMS WVRQTPEKRLAW 
               
               
                   
               
               
                 VA   SISTAGRTYYPDTVRG   RITISRDNARNILYLQMSSLRSEDTAIYY 
               
               
                   
               
               
                 CAR   PDYDYDGYIN   WGQGTLVTVSA AKTTPPSVYPLAPGCGDTTGSSV   
               
               
                   
               
               
                 
                   TLGCLVKGYFPESVTVTWNSGSLSSSVHTFPALLQSGLYTMSSSVTV 
                 
               
               
                   
               
               
                 
                   PSSTWPSQTVTCSVAHPASSTTVDKKLEPSGPISTINPCPPCKECHK 
                 
               
               
                   
               
               
                 
                   CPAPNIEGGPSVFIFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQI 
                 
               
               
                   
               
               
                 
                   SWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWMSGKEFKCK 
                 
               
               
                   
               
               
                 
                   VNNKDLPSPIERTISKIKGLVRAPQVYILPPPAEQLSRKDVSLTCLV 
                 
               
               
                   
               
               
                 
                   VGFNPGDISVEWTSNGHTEENYKDTAPVLDSDGSYFIYSKLNMKTSK 
                 
               
               
                   
               
               
                 
                   WEKTDSFSCNVRHEGLKNYYLKKTISRSPGK 
                 
               
               
                   
               
               
                 Light chain: Amino acid sequence (219 aa) 
               
               
                 (SEQ. ID No. 18) 
               
               
                 DIVMTQAAFSNPVTLGTSAYISC   RSSKSLLHSNGVTYLY   WYLQKPGQ 
               
               
                   
               
               
                 SPQLLIY   QMSNLAS   GVPDRFSSSGSGTDFTLRISRVEAEDVGVYYC   A     
               
               
                   
               
               
                     QNLELPLT   FGAGTKLELK RADAAPTVSIFPPSSEQLTSGGASVVCFL   
               
               
                   
               
               
                 
                   NNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTK 
                 
               
               
                   
               
               
                 
                   DEYERHNSYTCEATHKTSTSPIVKSFNRNEC 
                 
               
            
           
         
       
     
     PRO-C23 Assay and Technical Evaluation 
     ELISA-plates used for the assay development were Streptavidin-coated from Roche (cat.: 11940279). All ELISA plates were analyzed with the ELISA reader from Molecular Devices, SpectraMax M, (CA, USA). The selected monoclonal antibody was labelled with horseradish peroxidase (HRP) using the Lightning link HRP labeling kit according to the instructions of the manufacturer (Innovabioscience, Babraham, Cambridge, UK). A 96-well streptavidin plate was coated with biotin-GLPVPGCWHK (SEQ. ID No. 1) (Genscript, USA) and incubated 30 minutes at 20° C. 20 μL of standard peptide or samples were added to appropriate wells, followed by 100 μL of HRP conjugated monoclonal antibody 10F6, and incubated 20 hour at 4° C. Finally, 100 μL tetramethylbenzidine (TMB) (Kem-En-Tec cat.4380H) was added and the plate was incubated 15 minutes at ° C. in the dark. All the above incubation steps included shaking at 300 rpm. After each incubation step, the plate was washed five times. The TMB reaction was stopped by adding 100 μL of stopping solution (1% H 2 SO 4 ) and measured at 450 nm with 650 nm as the reference. 
     The lower limit of detection (LLOD) was determined from 21 zero samples (i.e. buffer) and calculated as the mean+3×standard deviation. Upper limit of detection (ULOD) was determined as the mean−3×SD of 10 measurements of Standard A. The intra-assay and inter-assay variation was the mean variations of 10 QC samples run 10 independent times in duplicate. Dilution recovery was determined in 4 serum samples and 4 plasma samples and was calculated as a percentage of recovery of diluted samples from the 100% sample. Correlation between serum and plasma was determined in serum and the matched heparin plasma, citrate plasma, EDTA plasma from 16 individuals (Innovative Research, USA). 
     Western Blotting with Recombinant Human Type XXIII Collagen 
     Recombinant human type XXIII collagen (R&amp;D system, 4165-CL) was diluted in sample buffer containing 80 mM DTT and run on a 10% SDS-PAGE gel, and subsequently transferred onto a nitrocellulose membrane. The nitrocellulose membranes were then blocked for non-specific binding by incubation for 1 hour at room temperature in TBS-T containing 5% skim milk powder. This was followed by incubation with 1 μg/ml 10F6 or commercial type XXIII collagen antibody (R&amp;D system, MAB4165) diluted in TBS-T milk for overnight. Then the membranes were washed in TBS-T three times, followed by incubation in the secondary peroxidase conjugated antibody. Finally, the membranes were washed in TBS-T three times, and then the results were visualized using the ECL system (GE healthcare, cat #RPN2109). 
     DSS Rat Model 
     Male Sprague-Dawley rats, 12 weeks of age, were divided into 2 groups: 6% DSS group (12 rats) and a control group (9 rats). Acute colitis was induced in the DSS group by adding 6% of DSS to the drinking water for 5 days. After day 5, DSS was withdrawn from drinking water. Half of the rats in 6% DSS group and 3 control rats were sacrificed at day 6 to remove colon. The remaining the rats were allowed to recover from the DSS induced colitis until sacrifice at day 16. Blood samples were taken at baseline, day 6, 7 and 16. Disease activity index (DAI) was scored every day to evaluate the progression of colitis. It was based on the following parameters: weight loss, stool consistency and blood in feces or rectal bleeding. The weight loss score in DSS rats was compared to the mean weight of age-matched controls: score 0=0-4% weight loss; score 1=5-10.9% weight loss; score 2=11-15.9% weight loss; score 3=16-20% weight loss. Stool consistency: score 0=normal and well formed; score 1=soft and sticky stool visible at base of tail; score 2=very soft and unformed; score 4=diarrhoea and watery stool. Blood in feces or rectal bleeding: score 0=normal color stool; score 2=reddish color stool; score 4=bloody stool or bleeding from rectum. The score for each parameter resulted in a daily total DAI score ranging between 0 and 12. A total score of 5 or above was considered as high disease activity. 
     IBD Cohorts 
     Three different cohorts were measured to evaluate biological relevance of PRO-C23 assay. Serum samples were collected after informed consent and approval by the local Ethics Committee. In cohort 1, serum from CD and UC patients were obtained from commercial vendor Reprocell (USA), whereas as the serum from healthy donors were obtained from Valley Biomedical (USA) (table 1). In cohort 2 and cohort 3, serum from patients with CD and UC were obtained, respectively (table 2) For any of the cohorts, there were no significant statistical differences between the patient demographics (gender and age) of healthy donors, CD and UC patients. 
     
       
         
           
               
             
               
                 TABLE 1 
               
             
            
               
                   
               
               
                 Patient demographics of cohort 1 
               
            
           
           
               
               
               
               
               
            
               
                   
                 Healthy 
                   
                   
                   
               
               
                   
                 controls 
                 CD 
                 UC 
               
               
                   
                 (N = 10) 
                 (N = 10) 
                 (N = 10) 
                 P value 
               
               
                   
                   
               
            
           
           
               
               
               
               
               
            
               
                 Age 
                 43.5 
                 40.5 
                 45.5 
                 0.57 
               
               
                 Male, n (%) 
                 7 (70%) 
                 8 (80%) 
                 7 (70%) 
                 0.85 
               
               
                   
               
               
                 Comparison of age and gender was performed using Kruskal-Wallis test. 
               
               
                 P-values below 0.05 were considered significant. 
               
               
                 Abbreviations: CD: Crohn&#39;s disease, UC: Ulcerative colitis. 
               
            
           
         
       
     
     
       
         
           
               
             
               
                 TABLE 2 
               
             
            
               
                   
               
               
                 Patient demographics of cohort 2 and 3 
               
            
           
           
               
               
               
               
               
            
               
                   
                 Crohn&#39;s 
                 Ulcerative 
                   
                   
               
               
                   
                 disease 
                 colitis 
                 Healthy 
                 P- 
               
               
                 General 
                 (cohort 2) 
                 (cohort 3) 
                 donors 
                 value 
               
               
                   
               
               
                 Total samples 
                 44 
                 29 
                 29 
                   
               
            
           
           
               
               
               
               
               
               
               
               
            
               
                 Gender: n (%) 
                 16 
                 (37%) 
                 14 
                 (41%) 
                 12 
                 (41%) 
                 0.599 
               
               
                 female 
               
               
                 Age (years, 
                 36 
                 [19-73] 
                 39 
                 [17-62) 
                 38 
                 [22-58] 
                 0.392 
               
               
                 mean [range]) 
               
            
           
           
               
               
               
               
               
               
               
            
               
                 Crohn&#39;s Disease 
                 24 
                 (54%) 
                   
                   
                 NA 
                   
               
               
                 Activity Index 
               
               
                 (CDAI) &gt; 150 
               
            
           
           
               
               
               
               
               
               
               
            
               
                 Partiel mayo 
                 NA 
                 14 
                 (48%) 
                   
                   
                   
               
               
                 score (&gt;1) 
               
            
           
           
               
               
               
               
               
               
               
            
               
                 Age at diagnosis 
                   
                   
                   
                   
                 NA 
                   
               
               
                 (n(%)) 
               
            
           
           
               
               
               
               
               
               
               
               
            
               
                 A1 (&lt;16) 
                 0 
                 (0%) 
                   
                   
                   
                   
                   
               
               
                 A2 (17-40) 
                 31 
                 (71%) 
               
               
                 A3 (&gt;40) 
                 13 
                 (29%) 
               
            
           
           
               
               
               
               
               
               
               
            
               
                 Disease location 
                   
                   
                   
                   
                 NA 
                   
               
               
                 start IFx (n(%)) 
               
            
           
           
               
               
               
               
               
               
               
               
            
               
                 L1 (n, %) 
                 5 
                 (11%) 
                   
                   
                   
                   
                   
               
               
                 L2 (n, %) 
                 14 
                 (32%) 
               
               
                 L3 (n, %) 
                 25 
                 (57%) 
               
            
           
           
               
               
               
               
               
               
               
            
               
                 Disease behavior 
                   
                   
                   
                   
                 NA 
                   
               
               
                 start IFx (n(%)) 
               
            
           
           
               
               
               
               
               
               
               
               
            
               
                 B1: Luminal 
                 20 
                 (45%) 
                   
                   
                   
                   
                   
               
               
                 disease 
               
               
                 B2: Stricturing 
                 11 
                 (25%) 
               
               
                 B3: Penetrating 
                 13 
                 (30%) 
               
            
           
           
               
               
               
               
               
               
               
            
               
                 Disease extension 
                   
                   
                   
                   
                 NA 
                   
               
            
           
           
               
               
               
               
               
               
               
               
            
               
                 E1: proctitis 
                   
                   
                 2 
                 (7%) 
                   
                   
                   
               
               
                 E2: Left-sided 
                   
                   
                 8 
                 (28%) 
               
               
                 E3: Pan-colitis 
                   
                   
                 19 
                 (66%) 
               
            
           
           
               
               
               
               
               
               
               
            
               
                 Disease severity 
                   
                   
                   
                   
                 NA 
                   
               
            
           
           
               
               
               
               
               
               
               
               
            
               
                 S1: Mild 
                   
                   
                 15 
                 (52%) 
                   
                   
                   
               
               
                 S2: Moderate 
                   
                   
                 13 
                 (45%) 
               
               
                 S3: Severe 
                   
                   
                 1 
                 (3%) 
               
            
           
           
               
               
               
               
               
            
               
                 Peri-anal disease 
                  0 
                  0 
                 NA 
               
               
                   
               
               
                 Comparison of age and gender was performed using a Mann-Whitney U test or fisher&#39;s exact test. 
               
               
                 P-values below 0.05 were considered significant. 
               
               
                 Abbreviations: CD: Crohn&#39;s disease. 
               
            
           
         
       
     
     Statistics 
     Statistical analysis was performed using MedCalc version 14 and GraphPad Prism version 7. The biomarker levels were presented as median±95% confidence interval. The differences of PRO-C23 between DSS rats and controls were determined by unpaired t-test. In human cohorts, comparison of age and gender was performed using a Kruskal-Wallis test. The differences of PRO-C23 between patients and healthy controls were determined by Mann-Whitney t-test. The diagnostic power of biomarkers was investigated by the area under the receiver-operating characteristics (ROC) curve (AUC) with 95% confidence interval (CI). Sensitivity and specificity were determined for appropriate cut-off values based on the ROC curves. Significance threshold was set at P&lt;0.05. 
     Results 
     Characterization of PRO-C23 Assay 
     Like type XXIII collagen, type XIII and XXV collagens are also transmembrane collagens and share highly similar sequences in their C-terminus ( FIG. 1A ). To fully investigate the specificity of the antibody, a series of peptides were synthesized and included in the inhibition test. The chosen antibody 10F6 specifically recognized the last 10 amino acids of C-terminus of type XXIII collagen  531 ‘GLPVPGCWHK’ 540 , (SEQ. ID No. 1) but did not recognize elongated peptide GLPVPGCWHKA (SEQ. ID No. 16), truncated peptide GLPVPGCWH(SEQ. ID No. 3), type XIII collagen C-terminal peptide GLPVQGCWNK (SEQ. ID. No. 4), or type XXV collagen C-terminal peptide GLPMPGCWQK. (SEQ. ID No. 5) ( FIG. 1B ). Western blot of recombinant type XXIII collagen ectodomain (4165-CL, R&amp;D system) showed that the chosen antibody 10F6 recognized type XXIII collagen ectodomain around 60 kD, while reference commercial antibody (MAB4165, R&amp;D system) was also shown ( FIG. 1C ). 
     PRO-C23 competitive ELISA provided a measurement range from 0.38 ng/ml (LLOD) to 18.73 ng/ml (ULOD). The inter- and intra-assay variability were 8.1% and 3.5%, respectively. The dilution recovery and spiking recovery in human serum was shown in Table 3. The correlations between values in human serum and three kinds of plasmas were relatively high ( FIG. 2 , P&lt;0.0001), showing that PRO-C23 levels were independent of blood preparation method. 
     
       
         
           
               
             
               
                 TABLE 3 
               
               
                   
               
               
                 Technical performance of PRO-C23 assay 
               
               
                   
               
             
            
               
                   
               
            
           
           
               
               
               
            
               
                   
                 Detection range (LLOD-ULOD) 
                 0.38 ng/mL-18.73 ng/mL 
               
               
                   
                 Intra-assay variability 
                 3.5% 
               
               
                   
                 Inter-assay variability 
                 8.1% 
               
               
                   
                 Dilution recovery in serum 
                 Within 100 ± 20% 
               
               
                   
                 Spiking recovery in serum 
                 75.8%  
               
               
                   
                 Interference 
                 No HAMA, biotin, intralipid 
               
               
                   
                   
                 and hemoglobin interference 
               
               
                   
                   
               
            
           
         
       
     
     PRO-C23 Biomarker in DSS Rat Model 
     To investigate the biological relevance of PRO-C23 fragment, a rat model of DSS induced colitis was used. PRO-C23 biomarker was measured in serum samples. DSS rats with high disease activity index (DAI≥5) at day 6 and 7 had significantly higher PRO-C23 serum levels (p&gt;0.05,  FIG. 3A ) compared to controls. The serum levels of PRO-C23 increased upon induction of colitis and returned towards baseline at reversal of the intestinal inflammation ( FIG. 3B ). 
     PRO-C23 Biomarker in Human IBD Cohorts 
     PRO-C23 was measured in serum from three independent human cohorts. In cohort 1, PRO-C23 were quantified in 10 CD and 10 UC patients, together with 10 age-matched healthy donors. Results showed that CD and UC patients have significantly higher levels of PRO-C23 (p&lt;0.05,  FIG. 4 ) compared to healthy donors. No information of the activity of the disease in these patients was given. In cohort 2 and 3, 44 CD patients and 29 UC patients were included, together with 29 age-matched healthy donors. PRO-C23 levels were elevated in active CD patients and active UC patients compared to healthy donors (CD: p&lt;0.05, UC: p&lt;0.001  FIG. 5 ). 
     DISCUSSION 
     It was hypothesized that type XXIII collagen could be cleaved from cell surface during epithelial damage. Moreover, the loss of type XXIII collagen could contribute to the epithelial adhesion change in IBD and so used as a biomarker for IBD. Therefore, a PRO-C23 ELISA measuring the ectodomain of type XXIII collagen was developed. 
     The antibody only recognized the C-terminus sequence of type XXIII collagen and had no cross-reaction with C-terminus of type XIII and XXV collagen which showed similar sequences. This data clearly confirmed the specificity of the antibody. Thereafter, the antibody was applied in a competitive ELISA and optimized for human serum and plasma measurement. The data demonstrated that the ectodomain of type XXIII could be detected in circulation by the competitive ELISA independent of blood preparation method. 
     In order to further validate the biomarker in in vivo studies, the PRO-C23 biomarker was measured in a DSS induced colitis rat model. DSS can cause intestinal epithelial cell injury. The animals exhibit IBD-like symptoms, such as diarrhoea, rectal bleeding and weight loss [25,26]. One study also showed that DSS can induce altered tight junction protein expression [27]. Therefore, DSS rat model could be an appropriate animal model to validate PRO-C23 biomarker. Type XXIII collagen was found to be elevated in rats with active disease and weakly correlated with disease activity. This finding indicated the ectodomain of type XXIII collagen found in circulation related with disease activity of DSS rats. 
     To further validate the PRO-C23 biomarker, it was measured in two human cohorts. PRO-C23 was elevated in human CD patients (cohort 2) and in UC patients (cohort 3) with active disease. These data suggested the release of ectodomain of type XXIII collagen was reinforced in the active intestinal damage, which was consistent with the results in animal model. 
     Type XXIII collagen has been suggested to be a potential biomarker for prostate cancer recurrence [18], non-small cell lung cancer [17] and clear cell renal cell carcinoma [14]. It showed significantly higher expression in those cancer tissues, especially in the metastatic tissue. It is believed that type XXIII collagen facilitates cell-cell adhesion and cell-matrix adhesion [13]. Silencing type XXIII collagen in lung cancer and clear cell renal cell lines showed altered adhesion protein expressions and less ability on cell adhesion and migration [13,14]. However, type XXIII collagen is also present in other tissue, and the function and the use in other diseases are yet unknown. To the inventors&#39; knowledge, this is the first study that showed type XXIII collagen level was modulated in IBD. The results indicate that type XXIII collagen may also play an important role in cell adhesion in intestines and contribute to the pathologies of IBD. 
     CONCLUSION 
     The data indicates that the biomarkers of epithelium PRO-C23 can be used as non-invasive surrogates of disease activity in CD patients and thus aid in monitoring patients. Higher levels of PRO-C23 were measured in serum of CD and UC patients with active disease compared to inactive disease. 
     All prior teachings acknowledged in this specification are hereby incorporated by reference. No acknowledgement of any prior published document herein should be taken to be an admission or representation that the teaching thereof was common general knowledge in Australia or elsewhere at the date hereof. 
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