Patent Publication Number: US-7595053-B2

Title: Chimeric T helper-B cell peptide vaccine for Japanese encephalitis virus

Description:
This application is a Continuation-in-Part of co-pending application, U.S. Ser. No. 10/250,468, filed Nov. 4, 2003, which is U.S. National Stage of Application No. PCT/IN02/0003, both of which is incorporated by reference herein in its entirety. 
    
    
     DESCRIPTION  
     Field Of The Invention 
     This invention relates to chimeric T helper-B cell peptide as a vaccine for Japanese encephalitis virus. 
     BACKGROUND OF THE INVENTION  
     Amongst insect borne viral diseases, Japanese encephalitis and dengue have a notoriety of encompassing entire region of South East Asia. The envelope glycoprotein contains at least five determinants that seem to be correlated with the important biological properties of hemagglutination and neutralization. Envelope glycoprotein is responsible for the attachment of the virus and thus is associated with infectivity. The existing vaccine for Japanese encephalitis is purified, killed virus vaccine prepared from infant mouse brain that consists of mainly envelope glycoprotein of the virus. Three injections of mouse brain derived killed purified vaccine followed by a booster after 12 to 18 months, can give effective immunization as judged by induction of neutralizing antibodies. Mouse brain vaccine shows neutralizing antibodies against Indian strain also. The efficacy of the vaccine has been noted only if three doses are administered. U.S. Pat. No. 5,824,506 Chan, et al. Oct. 20, 1998 discloses peptide antigens derived from the dengue virus type-2 glycoprotein NS1. The peptide antigens are specifically immunoreactive with sera from individuals infected with the dengue virus. The antigens are useful as diagnostic tools in determining whether an individual has been or is infected with dengue virus, and for discriminating between infection with dengue virus and infection with related flaviviruses. The antigens are also useful in vaccine compositions for immunizing individuals against infection with the dengue virus. 
     U.S. Pat. No. 5,494,671 Lai, et al. discloses C-terminally truncated flavivirus envelope proteins 80-81% in size which are more immunogenic than their counterpart full-length proteins. The aforesaid patent further discloses recombinant viruses that encode the truncated protein and to host cells infected therewith. Host cells express the truncated protein on their outer membrane and secrete it into the medium. The patent discloses vaccines for use against flavivirus infection. The vaccines include either a recombinant vaccinia virus expressing the truncated envelope protein, and the truncated envelope protein produced by a recombinant baculovirus. 
     In China, attenuated Japanese encephalitis virus vaccine consisting of Japanese encephalitis virus strain SA 14-14-2 is being used. The attenuation has been carried out in hamster kidney cells and have unknown passage histories. Mice inoculated intracerebrally with the SA 14-14-2 vaccine strains survived without showing any signs of CNS involvement. The virus titers in brains persisted at low levels for several days and could not be detected after 10 days (Hase T, Dubois, Dr. Summers, P L, Downs, M B and Ussery, M A. (1993) Comparison of replication rates and pathogenicities between the SA14 parent and SA14-14-2 vaccine strains of Japanese encephalitis virus in mouse brain neurons. Arch Virol 130 131-43. Dubois T., Dr. Summers, P L. Downs, M B and Ussery, M A (1993) Comparison of replication rates and pathogenicities between the SA14 parent and SA 14-14-2 vaccine strains of Japanese encephalitis virus in mouse brain neurons. Arch Virol 130 131-43). The safety and immunogenicity of this vaccine has been tested. 1,026 children between the ages of 5 and 12 years, were vaccinated with live-attenuated Japanese encephalitis virus vaccine. None of the group of 47 of the vaccinated children, has temperature &gt;37.4° C. Seroconversion rates in seronegative children were 100% (GMT 35.3) (Xin Y Y, Ming, Z G, Peng, G Y, Jain, A and Min, L H (1988) Safety of a live-attenuated Japanese encephalitis virus vaccine (SA14-14-2) for children. Am J Trop Med Hyg 39 214-7). Many attempts are being carried out to develop recombinant vaccine for Japanese encephalitis virus. These include expression of various proteins and then immunizing animals with the products. It was realized very early that expression and immunization with envelope glycoprotein alone was not very useful (Mason P W, McAda, P C, Dalrynple, J M, Fournier, M J and Mason, T L (1987) Expression of Japanese encephalitis virus antigens in Escherichia coli. Virology 158 361-72). Mice immunized with recombinant baculovirus infected cells containing envelope glycoprotein and NS-1 genes were challenged with Japanese encephalitis virus. Survival was increased from about 30% in unimmunized mice to 70% in envelope glycoprotein and polyprotein recipients but not in NS-1 recipients (McCown J, Cochran, M, Putnak, R, Feighny, R, Burrous, J, Henchal, E and Hoke, C (1990). Protection of mice against lethal Japanese encephalitis with a recombinant baculovirus vaccine. Am J Trop Med Hyg 42 491-9). Immunization of mice with purified extracellular subviral particles composed of prM and E proteins in recombinant vaccinia viruses could protect mice from 4.9×10 5  LD50 of Japanese encephalitis virus. (Konishi E, Pincus, S, Paoletti, E, Shope, R E, Burrage, T and Mason, P W. (1992) Mice immunized with a subviral particle containing the Japanese encephalitis virus prM/M and E proteins are protected from lethal JEV infection. Virology 188 714-20). These particulate antigens were also shown to induce Japanese encephalitis virus specific CTL response in mice. (Konishi E, Win, K S, Kurane, I, Mason, P M, Shope, R E and Ennis, F A (1997) Particulate vaccine candidate for Japanese encephalitis induces long-lasting virus-specific memory T lymphocytes in mice. Vaccine 15 281-6). 
     Vaccinia recombinants that co-expressed the genes for premembrane and envelope glycoprotein elicited high levels of neutralizing and HI antibodies in mice and protected mice from a lethal challenge by Japanese encephalitis virus. Recombinants expressing only the gene for NS1 induced antibodies to NS1 but provided low levels of protection from a similar challenge dose of Japanese encephalitis virus. Immunization of mice with vaccinia recombinant viruses containing PrM gene along with NS-1 and envelope glycoprotein protected them from challenge with Japanese encephalitis virus. Pox virus (Canary pox and vaccinia) based Japanese encephalitis recombinant vaccines have been constructed and shown to produce Japanese encephalitis virus specific CTLs in mice. (Konishi, E, Kurane, I Mason, P W, Shope, R E and Ennis, F A (1997) Poxvirus-based Japanese encephalitis vaccine candidates induce J E virus specific CD8+ cytotoxic T lymphocytes in mice. Virology 227 353). Poxvirus-based recombinant J E vaccine candidates, NYVAC-JEV and ALVAC-JEV, encoding the Japanese encephalitis virus prM, E and NS1 proteins were examined for their ability to induce Japanese encephalitis virus-specific CTLs. The volunteers received subcutaneous inoculations with each of these candidates on days 0 and 28. Anti-E and anti-NS1 antibodies were elicited in a most vaccinees inoculated with NYVAC-JE virus and in some vaccinees inoculated with ALVAC-JEV, PBMCs obtained from approximately one half of vaccinees showed positive proliferation in response to stimulation with live Japanese encephalitis virus. Presence of the Japanese encephalitis virus-specific CDS+CD4− cytotoxic T cells in vitro-stimulated peripheral blood mononuclear cells obtained from two NYVAC-JEV and two ALVAC-JEV vaccinees was demonstrated. (Konishi E, Kurane, I, Mason, P M, Shope, R E, Kanesa-Thasan, N, Smucny, J J, Hoke, C H Jr and Ennis, F A (1998). Induction of Japanese encephalitis virus-specific cytotoxic T lymphocytes in humans by poxvirus-based J E vaccine candidates. Vaccine 16 842-9). A chimeric Yellow fever (YF)/JE virus (ChimeriVax-JE virus) was constructed by insertion of the prM and envelope glycoprotein genes of an attenuated human vaccine strain (SA14-14-2) of Japanese encephalitis virus between C and NS genes of a YF 17D infectious clone. Mice inoculated subcutaneously with one dose of &gt;/=10 3  pfu of ChimeriVax-JE virus were protected against IP challenge with a virulent Japanese encephalitis virus. 
     In recent years, it has been shown that fragments of proteins in the form of synthetic peptides can be used to induce T helper and antibody responses. Attempts to delineate B cell epitopes from Japanese encephalitis virus have resulted in delineation of Met 303 to Trp 396 as the shortest sequence capable of reacting with 10 Mabs. Disulfide bond between cys 304 and 335 was required for presentation of the binding site(s) for these Mabs. However, it was not an effective immunogen for inducing neutralizing or protective antibodies in mice (Mason P W, Dalrymple, J M, Gentry, M K, McCown, J M, Hoke, C H, Burke, D S, Fournier, M J and Mason, T L (1989) Molecular characterization of a neutralizing domain of the Japanese encephalitis virus structural glycoprotein. J Gen Virol 70 2037-49). The fragment carrying the coding sequence of amino acid 373-399 of envelope glycoprotein elicited the highest neutralizing antibody titer (1:75). HI antibodies were not induced by this fusion protein (Seif S A, Korita, K and Igarashi, A (1996) A 27 amino acid coding region of E virus protein expressed in  E. coli  as fusion protein with glutathione-S-transferase elicit neutralizing antibody in mice. Virus Res 43 91-6). Neutralizing antibody inducing epitopes have been detected on C terminal regions of envelope glycoprotein (Seif S A, Morita, K, Matsuo, S, Hasebe, F and Igarashi, A (1995) Finer mapping of neutralizing epitope(s) on the C-terminal of Japanese encephalitis virus E-protein expressed in recombinant Escherichia coli system. Vaccine 13 1515-21 and Jan L R, Yang, C S, Henchal, L S, Sumiyoshi, H, Summers, P L, Dubois D R and Lai, C J (1993) Increased immunogenicity and protective efficacy in outbred and inbred mice by strategic carboxyl-terminal truncation of Japanese encephalitis virus envelope glycoprotein. Am J Trop Med Hyg 48 412-23) Peptides from C protein have also been delineated for reactivity with sera from Japanese encephalitis and dengue patients. Pep91-105 and 8-22 belonged to group-specific epitopes that reacted with both Japanese encephalitis and dengue-1 patient sera. Pep 1-15 and 34-48 belonged to subcomplex-specific epitopes that reacted only with Japanese encephalitis but not with dengue-1 patient sera. (Huang J H, Wey, J J, Lee, H F, Tsou) T L, Wu, C S, Wu, J R, Chen, H M, Chin, C, Chien, L J, Chen, L K, Wu Y C, Pan, M J and Wang, T M (1996) Identification of immunodominant, group-specific and subcomplex-specific, continuous epitopes in the core regions of Japanese encephalitis virus using synthetic peptides. Virus Res 41 43-53). 
     DISADVANTAGES OF THE PRIOR ART 
     In the case of mouse brain derived killed purified vaccine, three doses of the injectable vaccine are to be administered. A trial with vaccine made in Japan was carried out in the South Arcot district of Tamil Nadu, India. Of a total of 113 school children, 72% showed antibody response while the responders increased to 87.8% after a booster dose of Biken Japanese encephalitis vaccine after one year. Only about 20 percent of the children had persisting antibodies one year after the primary vaccination. (Mohan Rao C V R, Risbud, A R, Dandawate, C N, Umarani, U B, Ayachit, V M, Rodrigues, F M and Pavri, K M (1993) Serological response to Japanese encephalitis vaccine in a group of school children in South Arcot district of Tamil Nadu Indian J Med Res 97 53-59). The problems of strain variation and the protection offered by the inactivated vaccine based on Nakayana have always been noted. 
     In the case of attenuated Japanese encephalitis vaccine used in China, although efficacy of the vaccine has been proven in many studies by now, there are some problems associated with the licensing of this vaccine all over the world. The passage history and the laboratory practices, which were used in the generation of this vaccine, have not been known completely. Thus, attempts to re-invent the attenuated strain from the same SA14-14-2 strain have been carried out. In a Japanese study antibodies against both envelope glycoprotein and NS 1 were observed in mice infected with the attenuated Japanese encephalitis virus strain SA(A) derived from the live Japanese encephalitis vaccine strain SA14-14-2. (Lee T, Komiya, T, Watanabe, K, Aizawa, C and Hashimoto, H (1995) Immune response in mice infected with the attenuated Japanese encephalitis vaccine strain SA14-14-2. Acta Virol 39 261-4). 
     The problems associated with vaccine for Japanese encephalitis are, e.g. discrepancy in the age at which Japanese encephalitis vaccine should be administered. The cost of currently available vaccine is very high. The additional cost of administering three doses will also have to be taken into consideration. It is not known whether the effect of Japanese encephalitis vaccine will be long lasting, in the absence of exposure to Japanese encephalitis after the third dose. Whether yearly boosters are required or not, until natural immunity due to natural Japanese encephalitis infection is not known. Thirdly, the immune response to Japanese encephalitis virus is very low (Pavri K M (1984)) Problems of JE immunization in India. Proc. Of National Conference on Japanese encephalitis. Ind. J. Med. Res Suppl pp 81-84) In addition, the question of immunity to the local strains by Nakayama or Beijing strains of virus used in vaccine will have to be taken into consideration. As the vaccine is mouse brain derived, there are allergic reactions to the vaccine and the frequencies of allergic mucocutaneous reactions varied from 1-17 per 10,000 vaccinees during 1983-1995 (Plesner A M and Ronne, T (1997) Allergic mucocutaneous reactions to Japanese encephalitis vaccine. Vaccine 15 1239-43). 
     These drawbacks have been overcome by the present invention. In recent years, it has been shown that fragments of proteins in the form of synthetic peptides can be used to induce T helper and antibody responses. (Ref) Thus, neutralizing antibody-inducing epitopes from envelope glycoprotein have been delineated. As these peptide sequences are not sufficient for inducing protective immunity, a chimeric peptide has been prepared incorporating T helper epitope along with the virus neutralizing antibody inducing B cell epitope. This will ensure that both T helper and B cell immunity is generated for the protection from Japanese encephalitis virus challenge. The said chimeric vaccine is designed and thus more than one chimeric peptide can be added to formulate the effective vaccine as per requirement in the future. 
    
    
     
       BRIEF DESCRIPTION OF THE DRAWINGS 
         FIG. 1  shows ELISA assays to test anti Japanese encephalitis virus immune responses, at varying dilutions of sera. The peptide labeled “TLD . . . EAQ” is SEQ ID NO:56; the peptide labeled “SEN . . . ASQ” is SEQ ID NO:57. 
         FIG. 2  shows T helper cell proliferation assays, which demonstrate the stimulation of Japanese encephalitis virus immune splenocytes with T helper peptides. 
         FIG. 3  shows ELISA assays in which anti Japanese encephalitis virus response was tested. It can be seen that the peptides are capable of eliciting immune response against JE virus especially if the chimeric peptide is the immunogen. 
         FIG. 4  shows neutralization experiments performed by a plaque reduction assay. In vitro virus neutralization is observed with anti chimeric peptide sera. 
         FIG. 5  shows survival curves, which indicate that mice immunized with a chimeric peptide were protected from lethal challenge by Japanese encephalitis virus. 
         FIG. 6  shows priming of neutralizing antibody response by T helper peptides. 
         FIG. 7  shows priming of neutralizing antibody response by T helper peptides and antigen. 
         FIG. 8  shows an immune response against chimeric peptides in mice. The values are P/N ratio calculated as a ratio of O.D. obtained in ELISA on purified JE virus between sera from mice immunized with peptide and PBS. 
         FIG. 9  shows a challenge of mice immunized with different chimeric peptides. Mice were immunized with chimeric peptide on 0, 14 and 28 days. All mice were challenged with JE virus i.p. followed by 1% starch i.c. Mice were observed for 21 days for sickness and death. The values in parentheses indicate average survival time. 
     
    
    
     OBJECTS OF THE INVENTION 
     It is an object of the present invention to propose safe and effective vaccines against flaviviruses for humans and animals. Various other objects and advantages of the present will become apparent from the ensuing description. 
     DESCRIPTION OF THE INVENTION 
     According to this invention there is provided a vaccine composition for humans and animals against Japanese encephalitis virus infection, comprising a chimeric synthetic peptide, said chimeric peptide selected from envelope glycoprotein, consisting of amino acids Egp 149-SENHGNYSAQVGASQ-163 (SEQ ID NO:1) and Egp 428-GSIGGVFNSIGKAVHQVFG-446 (SEQ ID NO:79) of Japanese encephalitis virus envelope glycoprotein, wherein chimeric peptide is in an amount sufficient to induce protective immunity against Japanese encephalitis virus infection. 
     In one embodiment, the present invention relates to a vaccine composition for humans and animals against Japanese encephalitis virus infection, comprising a chimeric synthetic peptide. The chimeric peptide was selected from envelope protein, and consists of amino acids 149-SENHGNYSAQVGASQAAKF-167 (SEQ ID NO:3) AND 428-GSIGGVFNSIGKAVHQVFG-446 (SEQ ID NO:79). 
     In another embodiment, the present invention also relates to a vaccine composition wherein said peptide 149-SENHGNYSAQVGASQAAKF-167 (SEQ ID NO:3) induces neutralizing antibodies against Japanese encephalitis virus. 
     In a further embodiment, it also relates to a vaccine composition for humans and animals against Japanese Encephalitis Virus infection comprising a neutralizing antibody inducing peptide sequences from envelope glycoprotein of Japanese encephalitis virus. The said sequences are amino acids 39-PTLDVRMINIEA-50 (SEQ ID NO:4), 273-EYSSSVKLTSG-283 (SEQ ID NO:5). 
     In another embodiment, the present invention also relates to peptide sequences from Japanese encephalitis virus envelope glycoprotein, capsid protein, membrane protein, non structural protein-1 and non structural protein-3 capable of stimulating T helper cells from immunized animals. 
     In another embodiment, the present invention also relates to a combination of peptides mentioned above resulting in chimeric T helper B cell peptides capable of inducing protective immunity against Japanese encephalitis virus infection. 
     Either B or T lymphocytes through their receptors may define epitopes as the regions of part of proteins that are recognized. Based on the cell involved, epitopes may be classified as B cell, T helper cell or CTL epitopes that stimulate B cells, T helper (CD4+) and CTLs respectively. MHC molecules present T helper cell epitopes to the TCR present on the T helper cells. B cell epitopes in contrast to the T helper cell epitopes have dependence on the three dimensional structure. B cell epitopes can be predicted using several different methods. B cell determinants of envelope glycoprotein of Bakura (India) strain (733913) were identified. Briefly, antigenic propensity values are assigned to each of the twenty amino acid residues based an their frequency of occurrence in experimentally confirmed B cell antigenic determinants. These parameters along with appropriate cutoff values were used in a computer program developed. Table I shows the predicted B cell determinants of envelope glycoprotein of Japanese encephalitis virus. 
     
       
         
           
               
             
               
                 TABLE 1 
               
             
            
               
                   
               
               
                 Predicted B cell epitopes from envelope glycoprotein of 
               
               
                 Japanese encephalitis virus. 
               
               
                 (SEQ ID NOS 6-29, respectively in order of appearance) 
               
            
           
           
               
               
            
               
                 Kolaskar &amp; Tongaokar&#39;s method 
                 Kutubuddin et al 1993 
               
               
                   
               
               
                 18-TWVDLVLEGDSCLTIM-33 
                   
               
               
                 40-TLDVRMI-46 
               
               
                 48-IEAVQLAEVRSYCYHASVTDISTVARCP-75 
                 75-CPTTGEAHNEKRADSSYV-92 
               
               
                 88-SSYVCKQG-95 
               
               
                 113-IDTCAKFSCTSK-124 
               
               
                 155-YSAQVGASQAAKFTVTPNAPSITLKL-180 
                 146-TTTSENHGNYS-156 
               
               
                 155-YSAQVGASQAAKFTVTPNAPSITLKLGD-182 
               
               
                 185-EVTLDCE-191 
               
               
                 199-EAFYVMTV-206 
               
               
                 208-SKSFLVHRE-216 
                 226-WTPPSSTAWRNR-237 
               
               
                 262-LHQALAG-268 
                 243-FEEAHATKQ-251 
               
               
                 273-EYSSSVKLTSGHLKCRLK-290 
               
               
                 292-DKLALKG-298 
                 309-FAFAKNPADTG-319 
               
               
                 320-GTVVIELSYS-329 
                 328-SYSGSDGP-335 
               
               
                 351-VGRLVTVN-358 
               
               
                 367-NSKVLVEME-375 
                 363-ATSSANS-369 
               
               
                 379-GDSYIVVGR-387 
               
               
                   
               
            
           
         
       
     
     Table 1 depicts amino acid sequences predicted from envelope glycoprotein of Japanese encephalitis virus. The amino acid sequence derived is from Japanese encephalitis virus strain Bankura (733913). 
     In order to arrive at the unique sequences that might be useful in vaccine development amino acid sequences from other related flaviviruses viz., WVN, MVEV, DENV and YFV were downloaded from protein data banks and multiple alignments were carried out using CLUSTAL program. Similarly in order to understand amino acid sequences from a few Japanese encephalitis virus strains were also subjected to multiple alignment. 
     The multiple alignments were carried out using the CLUSTAL program. The regions in the envelope glycoprotein which were identified as being non-homologous with other flaviviruses were: 
     
       
         
           
               
               
               
               
            
               
                 1. 
                 149-SENHGNYSAQVGASQ-163 
                 (SEQ ID NO:1) 
                   
               
               
                   
               
               
                 2. 
                  40-TLDVRMINIEA-50 
                 (SEQ ID NO:30) 
               
               
                   
               
               
                 3. 
                 270-IVVEYSSSVKLTS-282 
                 (SEQ ID NO:31) 
               
            
           
         
       
     
     These sequences were conserved within different Japanese encephalitis virus strains (as shown in FIG. 2 of US published patent application, 20040076634). This means that regions 40-50, 155-163 and 270-290 are unique to Japanese encephalitis virus. Antibodies induced against these peptides from envelope glycoprotein would thus have better chances of being neutralizing antibodies. It should be noted here that there are no major differences between the amino acid sequence of Japanese encephalitis virus Nakayama strain and Bankura strain. 
     Synthesis of Peptides 
     These peptides were synthesized by time standard solid phase synthesis protocols. The synthesis was carried out using FMOC (9-Fluorenylmethoxycarbonyl)amino acid pentafluoraphenyl (O PFP) esters on Novasyn PA 500 resin (Novabiochem Ltd. UK) that yielded peptide acids an cleavage. Completion of the coupling of amino acid was strictly monitored to avoid short substituted peptides by qualitative monitoring of the coupling reaction color test for detection of free terminal amino groups in the solid-phase for detection of free amino groups. Coupling also was checked at 290 nm by monitoring the FMOC group released during the deprotection step by 20% piperidine solution in dimethyl formamide. Peptides were cleaved from the resin by trifluoroacetic acid (TFA) with appropriate scavengers dictated by the sequence. The peptides were precipitated in super dry diethyl ether. The ether precipitated peptides were purified an HPLC and peaks collected. The purity was checked by assessing the single peak elution of the peptide under a linear gradient elution of 80% acetonitrile in water containing 0.1% TFA on reverse phase 18 column. Purified peptides were lyophilized and stored at −20. 
     Peptide with a purity &gt;85% were used for conjugation purposes. Alternatively, peptides in the region of 270-290 were synthesized on Pin head peptide synthesis modules using Fmoc amino acids using manufacturer&#39;s protocols. Side chains of these peptides were also cleaved by Trifluoroacetic acid cleavage keeping peptides attached to the pins. 
     Reactivity of Peptides with Monoclonal Antibodies Against JE Virus 
     A panel of anti Japanese encephalitis virus monoclonal antibodies that have different immunological properties: Epitope mapping of Japanese encephalitis virus envelope protein using monoclonal antibodies against an Indian strain developed at NIV. These MAbs were used to probe the antigenicity of the peptides. The purpose of this study was to determine the epitope recognized by the Mabs and also find the optimum peptide length and sequence as an epitope. This would also elucidate the structural requirement if any, for antibody binding. The MAbs included Hs-1, Hs-2, Hs-3 that are Japanese encephalitis virus specific, Hemagglutination inhibition (HI) positive Epitope mapping of Japanese encephalitis virus envelope protein using monoclonal antibodies against an Indian strain, J. Gen Virol 69 2714-7. Peptides (1 ug/well) were passively coated on ELISA wells (Immulon II, Nunc) using Na 2 CO 3 /HCO 3  buffer pH 9.6. Blocking was carried out by 1% BSA in PBS. Reaction of with peptide and washing were carried out in 1% BSA in PBS (0.01 M phosphate 0.15 M NaCl, pH 7.2). Monoclonal antibody was diluted either 1:50 or 1:100 for reaction. Hundred micro liters of antibody diluted in 1% BSA in PBS, was added and incubated for 60 min at 37° C. After washing with PBS containing 0.1% Tween 20, bound antibodies (Sigma, USA). In case of ELISA on Pin heads after blocking pins with peptides were dipped into wells containing antibody. The color development was carried out using H 2 O 2  and O-phenyl diamine (OPD) as the chromogen. The OD values were monitored at 492 nm. Epitope mapping of Japanese encephalitis virus envelope protein using monoclonal antibodies against an Indian strain. SF2/0 AF was used as negative control. The data in Table 2 clearly indicate, e.g., that peptides 39-PTLDVRMI-46 (SEQ ID NO:38) and 269-AIVVEYSS-276 (SEQ ID NO:48) react with Mab Hs-1 and peptide 151-NHGNYSAQVGASQAAKF-167 (SEQ ID NO:34) reacts with MAb Hs-2 and MAD Hs-3. 
     ELISA with JE Virus 
     ELISA wells (Nunc Immulon II) were coated with purified JE antigen (10 g/well) overnight, in sodium carbonate buffer (0.05 M, pH 9.8). Subsequently, wells were blocked with 1% bovine serum albumin (BSA) in PBS (0.01 M phosphate 0.15 M NaCl, pH 7.2). Hundred micro liters of antibody diluted in 1% ovalbumin in PBS, was added and incubated for 60 min at 37° C. After washing with PBS containing 0.1% Tween 20, bound antibody was probed with goat-anti mouse 1 g-horseradish peroxidase conjugated antibodies (Sigma, USA). The color development was carried out using H 2 O 2  and O-phenyl diamine (OPD) as the chromogen. The OD values were monitored at 492 nm (Cecilia et. al., 1988). Antibody response against JE virus was tested for anti-peptide antibody sera. In all these experiments, sera from PBS control mice and ovalbumin immunized mice were used as negative controls. Polyclonal immune AF was used as the positive control and peritoneal AF from the nonimmune mice was used as negative control. In experiments with MAbs, AF obtained from SP2/0 inoculated mice were used as negative control. 
     
       
         
           
               
             
               
                 TABLE 2 
               
             
            
               
                   
               
               
                 Reactivity of Peptides with monoclonal Antibodies against JE virus 
               
               
                 (SEQ ID NOS 35-46, 1, 47, 34, 3, 48-55, respectively in order of 
               
               
                 appearance) 
               
            
           
           
               
               
               
               
            
               
                 PEPTIDE 
                 Hs-1 
                 Hs-2 
                 Hs-3 
               
               
                   
               
               
                 33-IMANDKPT-40 
                 0.110 
                 0.016 
                 0.017 
               
               
                 35-ANDKPTLD-42 
                 0.022 
                 0.016 
                 0.052 
               
               
                 37-DKPTLDVR-44 
                 0.029 
                 0.016 
                 0.035 
               
               
                 39-PTLDVRMI-46 
                 0.313 
                 0.006 
                 0.025 
               
               
                 40-TLDVRMIN-47 
                 0.329 
                 0.008 
                 0.064 
               
               
                 41-LDVRMINI-48 
                 0.277 
                 0.007 
                 0.082 
               
               
                 42-DVRMINIE-49 
                 0.155 
                 0.008 
                 0.043 
               
               
                 43-VRMINIEA-50 
                 0.338 
                 0.012 
                 0.133 
               
               
                 45-MINIEASQ-52 
                 0.177 
                 0.001 
                 0.080 
               
               
                 47-NIEASQLA-54 
                 0.07  
                 0.003 
                 0.081 
               
               
                 155-YSAQVGASQ-163 
                 0.118 
                 0.492 
                 0.334 
               
               
                 151-NHGNYSAQVGASQ-163 
                 0.074 
                 0.294 
                 0.258 
               
               
                 149-SENHGNYSAQVGASQ-163 
                 0.093 
                 0.415 
                 0.377 
               
               
                 155-YSAQVGASQAAKF-167 
                 0.106 
                 0.501 
                 0.377 
               
               
                 151-NHGNYSAQVGASQAAKF-167 
                 0.084 
                 0.561 
                 0.259 
               
               
                 149-SENHGNYSAQVGASQAAKF-167 
                 0.095 
                 0.412 
                 0.400 
               
               
                 269-AIVVEYSS-276 
                 0.696 
                 0.041 
                 0.115 
               
               
                 270-IVVEYSSS-277 
                 0.637 
                 0.030 
                 0.112 
               
               
                 271-VVEYSSSV-278 
                 0.659 
                 0.029 
                 0.090 
               
               
                 272-VEYSSSVK-279 
                 0.290 
                 0.040 
                 0.106 
               
               
                 273-EYSSSVKL-280 
                 0.538 
                 0.045 
                 0.110 
               
               
                 274-YSSSVKLT-281 
                 0.616 
                 0.054 
                 0.153 
               
               
                 275-SSSVKLTS-282 
                 0.765 
                 0.053 
                 0.136 
               
               
                 276-SSVKLTSG-283 
                 0.447 
                 0.061 
                 0.123 
               
               
                   
               
            
           
         
       
     
     Conjugation of peptide with carrier immunization of mice. Peptides 40-TLDVRMINIEASQ-52 (SEQ ID NO:56) AND 149-SENHGNYSAQVGASQA-164 (SEQ ID NO:57) were synthesized, purified, and conjugated to the carrier molecule. The carrier molecule used in these experiments was Ovalbumin (OA). The peptide was dissolved in HEPES buffer (50 mM pH 8.5) at a concentration of 10 mg ml −1  was kept for stirring. While stirring, equal volume of Citraconic anhydride solution (in water 10 mg ml −1 ) was slowly added. During the reaction pH was maintained between 8-9. The reaction mixture was incubated for one hour at room temperature. The peptide was diluted to a concentration of 1 mg ml −1 . EDC (3-dimethyl-aminopropyl-3-ethyl carbodiimide) was added to it at a final concentration of 10 mg ml −1 , the pH was kept at 8.0. After a incubation at room temperature for 5 min, an equal volume of Ovalbumin was added at a molar ratio of 1:20 (carrier:peptide). The reaction was incubated at room temperature for four hrs and was terminated by sodium acetate pH 4.2 to a final concentration of 100 mM. After incubation for one hour, the solution was dialyzed against sodium acetate pH 4.2 and then against 12 liters of PBS with four changes over 12 hours. The peptide protein conjugate was lyophilized and stored below 0° C. 
     For immunization, 40 μg of peptide-protein conjugate emulsified in Freund&#39;s complete adjuvant (1:1) was injected by sub cutaneous route in mice. A group of four mice was used per peptide-protein carrier conjugate. Two boosters containing the similar amount of peptide-carrier conjugate were administered at weekly intervals in Freund&#39;s incomplete adjuvant. Control groups received carrier protein without peptide and PBS, emulsified with adjuvant. The mice were bled from the retro-orbital plexus, on 7th, 14th and 21st days post immunization for checking the antibody titer. Sera were separated and stored at −20° C. until used. Anti Japanese encephalitis virus immune response was checked by ELISA where the anti-peptide sera was allowed to react with the native Japanese encephalitis virus vision by the method mentioned above.  FIG. 1  shows the reactivity at different dilutions in ELISA 
     In order to fine tune this region in terms of antibody eliciting and antibody binding capacity, set of overlapping peptides were synthesized that were used to probe the same. The following overlapping peptides were synthesized: 
     
       
         
           
               
               
               
               
            
               
                 155-163 
                       YSAQVGASQ 
                 (SEQ ID NO:45) 
                   
               
               
                   
               
               
                 151-163 
                   NHGNYSAQVGASQ 
                 (SEQ ID NO:46) 
               
               
                   
               
               
                 149-163 
                 SENHGNYSAQVGASQ 
                 (SEQ ID NO:1) 
               
               
                   
               
               
                 155-167 
                       YSAQVGASQAAKF 
                 (SEQ ID NO:47) 
               
               
                   
               
               
                 151-167 
                   NHGNYSAQVGASQAAKF 
                 (SEQ ID NO:34) 
               
            
           
         
       
     
     All of these peptides were conjugated to ovalbumin as essential, according to the protocol mentioned above. Four BALB/c mice each were immunized with 40 ug per mouse per dose of these peptide OA conjugates along with Freund&#39;s adjuvant. The mice were administered booster doses at weekly intervals and bled through the retro-orbital route at weekly intervals. The anti Japanese encephalitis virus response was monitored by ELISA by the method mentioned above. Values mentioned are mean optical density readings obtained. 
     
       
         
           
               
               
             
               
                 TABLE 3 
               
             
            
               
                   
               
               
                 Reactivity of Anti peptide sera with Japanese encephalitis virus by ELISA 
                   
               
            
           
           
               
               
               
            
               
                 Mice immunized with adjuvant + ovalbumin 
                 Sera collected on post inoculation days 
                   
               
            
           
           
               
               
               
               
            
               
                 conjugated with peptide 
                 7 
                 14 
                 21 
               
               
                   
               
            
           
           
               
               
               
               
               
               
            
               
                   155 YSAQVGASQ 163   
                 (SEQ ID NO:58) 
                 0.212 ± 0.076 
                 0.236 ± 0.028 
                 0.195 ± 0.047 
                   
               
               
                   
               
               
                   151 NHGNYSAQVGASQ 163   
                 (SEQ ID NO:59) 
                 0.286 ± 0.153 
                 0.270 ± 0.62 
                 0.246 ± 0.090 
               
               
                   
               
               
                   149 SENHGNYSAQVGASQ 163   
                 (SEQ ID NO:60) 
                 0.242 ± 0.157 
                 0.268 ± 0.096 
                 0.268 ± 0.057 
               
               
                   
               
               
                   155 YSAQVGASQAAKF 167   
                 (SEQ ID NO:61) 
                 0.223 ± 0.037 
                 0.262 ± 0.067 
                 0.198 ± 0.0178 
               
               
                   
               
               
                   155 NHGNYSAQVGASQAAKF 167   
                 (SEQ ID NO:62) 
                 0.226 ± 0.060 
                 0.220 ± 0.033 
                 0.144 ± 0.021 
               
               
                   
               
               
                   149 SENHGNYSAQVGASQAAKF 167   
                 (SEQ ID NO:63) 
                 0.191 ± 0.058 
                 0.255 ± 0.050 
                 0.217 ± 0.029 
               
               
                   
               
               
                 Ovalbumin 
                   
                 0.127 ± 0.022 
                 0.116 ± 0.072 
                 0.153 ± 0.003 
               
               
                   
               
               
                 PBS 
                   
                 0.113 ± 0.034 
                 0.124 ± 0.029 
                 0.183 ± 0.029 
               
               
                   
               
            
           
         
       
     
     Table 3 shows the reactivity of the antipeptide antibodies against Japanese encephalitis virus by ELISA. Anti peptide antibody response reactive to Japanese encephalitis virus could be observed in all peptide immunized mice by 7th day. P1, i.e after the first dose. Antisera against all peptides showed reactivity with native Japanese encephalitis virus in ELISA confirming the correctness of the prediction method. 
     Delineation of T Helper Epitopes from Structural and Nonstructural Proteins of Japanese Encephalitis Virus 
     The importance of T helper cells in the immune response is well known. In course of development of B cells and maturation of immune response, B cells require certain localized cognate signals and cell-cell contact originating from T cells. Using a combination of methods to predict amphipathic, tetramer and pentamer motifs, along with prediction of helix preferers and sequences which would have I-A and I-E binding motifs were predicted for all proteins of JE virus. Prediction of Th epitopes was carried out using EPIPLOT, which included amphipathic helix segments predicted by AMPHI program developed by Margalit et al (Margalit H, Sponge J. L., Cornette J. L., Cease K. B, DeLisi C. and Berzofsky J. A. (1987) Prediction of immunodominant helper T cell antigenic sites from the primary sequence. J. Immunology 138, 2213-2229). For the prediction of amphipathic segments, Fauchere and Pliska hydrophobicity scales of amino acids were used; a block length of seven was selected. Fauchere J. L and Pliska V., (1983) Hydrophobic parameters II of amino acid side chains from the partitioning of N-acetyl amino acid Eur. J. Med. Chem. 18, 369-375. Tetramer and pentamer motif [charged residues or glycine followed by 2-3 hydrophobic residues and then a polar residue] by Rothbard and Taylor (Rothbard J. and Taylor W. R. (1998) A common sequence pattern in T cell epitopes. EMB J.7, 93-100). The prediction of sequence motifs of immunodominant secondary structures capable of binding to MHC [1a/1e] with high affinity was carried out by method of [Sette et al. (Sette A., Buus S., colon S., Miles C. and Grey H. M. (1989) Structural analysis of peptides capable of binding to more than one I a antigen. J. Immunol. 142, 35-40). Multiple alignment of flaviviruses by using ALIGN program to choose flavivirus cross-reactive Th epitopes. T helper peptides with high scores in each of these prediction programs were chosen. Cross-reactive epitopes were chosen on the basis of homology amongst flaviviruses. After sequence alignments and homology analysis between various flaviviruses 14 peptide sequences were chosen. 
     These peptides were synthesized on Chiron Pin-head modules using cleavable option as per the manufacturer&#39;s methodology. Peptides were cleaved by Trifluoroacetic acid method as mentioned above. BALB/c mice were primed with 0.1 ml, 10 −2  dilution of mouse brain live Japanese encephalitis virus, West Nile virus intra-peritoneally, Primed mice were inoculated sub-cutaneously with 0.1 ml of Japanese encephalitis virus, West Nile virus inactivated mouse brain antigen [10 ug] and normal antigen in equal volume of Complete Freund&#39;s adjuvant. Booster dose of above antigens were given similarly in Incomplete Freund&#39;s Adjuvant four days before harvesting. T helper cell proliferation assay was performed using spleenocytes from immunized and unimmunized mice. Spleenocytes were added to 96-well flat bottom plates at a concentration of 2×10 5  cells/well/0.1 ml. Cultures were stimulated with 0.1 ml of JEV antigen [5, 2.5 &amp; 1 ug/ml] and peptide [10, 5 &amp; 2.5 ug/ml] After 6 days, cultures were pulsed with 1 uCi [ 3 H] Thymidine for 18 h. Cells were harvested and counted for radioactivity. Values are depicted as Net cpm Net cpm=cpm in virus immune lymphocytes-cpm in non-immune lymphocytes. As shown in the Figure and Table, peptides especially from the nonstructural proteins of JE virus have shown better stimulation. 
       FIG. 2  shows the stimulations of Japanese encephalitis virus immune spleenocytes with T helper peptides. 
                         TABLE 4                  delineation of T helper peptides from JE virus                                         Response               Pro-   to                                     tein   Sequence   JE   WN                                                 Peptide 1   WN Egp   135-IKYEVAIFVHG-145   ++   +                   (SEQ ID NO:64)               Peptide 2   JE Egp   260-GALHQALAGAI-270   −   −               (SEQ ID NO:65)               Peptide 3   JE Egp   140-GIFVHGTTTSE-150   +   +               (SEQ ID NO:66)               Peptide 4   JE Egp   346-HVLGRLTTVN-355   +++   −               (SEQ ID NO:67)               Peptide 5   JE M    17-EAWLDSTKAT-26   ++++   −               (SEQ ID NO:68)               Peptide 6   JE PrM    36-WVRAIDVG-43   ++   −               (SEQ ID NO:69)               Peptide 7   JE NS1    37-ETPRSLAKIVHKAH-50   +   −               (SEQ ID NO:70)               Peptide 8   JE NS1   297-SVRTTTDSGKLITD-310   ++++   +               (SEQ ID NO:71)               Peptide 9   JE NS1   156-EDFGFGITSTRV-167   ++++   −               (SEQ ID NO:72)               Peptide 10   JE NS1   404-TDLARYVVL-412   +++   ++               (SEQ ID NO:73)               Peptide 11   JE NS3   202-KILPQIIKDAIQ-212   +   −               (SEQ ID NO:74)               Peptide 12   JE NS3    17-DTTTGVYRIMARG-29   ++   ++               (SEQ ID NO:75)               Peptide 13   JE NS3   534-FLELLRTAD-543   +   −               (SEQ ID NO:76)               Peptide 14   JE Egp   429-SIGGVFNSIGKAVHQ-443   +++   +               (SEQ ID NO:77)                    
Based on the results shown in Figure and Table, the following peptides have been chosen as candidate T helper cell peptides to be incorporated in Chimeric T helper B cell vaccine.
 
                                JE Egp   346-HVLGRLTTVN-355   (SEQ ID NO:67)                   JE M    17-EAWLDSTKAT-26   (SEQ ID NO:68)               JE NS1   297-SVRTTTDSGKLITD-310   (SEQ ID NO:71)               JE NS1   156-EDFGFGITSTRV-167   (SEQ ID NO:72)               JE NS1   404-TDLARYVVL-412   (SEQ ID NO:73)               JE Egp   429-SIGGVFNSIGKAVHQ-443   (SEQ ID NO:77)            
Preparation of Chimeric T Helper Anid B Cell Peptides Immunization and Protection Studies
 
     T helper cell epitopes were derived from envelope glycoprotein, as their potential to stimulate T cells was earlier checked in our laboratory (Kutubuddin, M, Kolaskar, A S, Salande, S, Gore M M, Ghosh. S N, Banerjee, K. (1991) Recognition of helper T cell epitopes in envelope (E) glycoprotein of Japanese encephalitis West Nile and Dengue virus. Mol. Immunol. 28 149-54). It was thus decided to make a synthetic peptide which has both T helper and B cell epitopes in tandem. The peptide that was co-linearly synthesized was: 
     
       
         
           
               
               
            
               
                 (SEQ ID NO:78) 
                   
               
            
           
           
               
               
               
            
               
                   
                 NH2-SENHGNYSAQVGASQGSIGGVFNSIGKAVHQVFG-COOH 
                   
               
            
           
         
       
     
     This peptide had two components viz., 
     
       
         
           
               
               
               
               
            
               
                   
                 B cell epitope 
                   
                   
               
               
                   
                 149-SENHGNYSAQVGASQ-163 
                 (SEQ ID NO:1) 
               
               
                   
                   
               
               
                   
                 T helper cell epitope 
               
               
                   
                 429-SIGGVFNSIGKAVHQVFG-446 
                 (SEQ ID NO:2) 
               
            
           
         
       
     
     The peptide was synthesized as a single peptide co-linearly using solid phase synthesis using FMOC amino acids as mentioned above. 
     The purified peptide collected as a single peak was lyophilized and used for immunizations. The immunization was done in different strains of adult mice that were both inbred and outbred (n=8). The inbred strains were BALB/C(H-2 d ) and C3H(H-2 k ) while the outbred strain was SWISS/Albino. The antigens used for immunization were the chimeric peptide, B cell peptide, commercial Japanese encephalitis virus vaccine (Obtained from Central Research Institute, Kasauli, India) and PBS (sham). The immunizations were done with a variation in schedule. The immunization schedule was a dose of 50 ug of peptide per mouse per dose through sc route, administered along with Freund&#39;s adjuvant every 14 days. For the first dose Freund&#39;s complete adjuvant while for the subsequent doses incomplete adjuvant was used. A total of two booster doses were given. All the mice were bled through the retro-orbital route on days—3 (preimmune sera), 10, 22, 34 days post first dose. The mice were challenged with a lethal dose of live virus an day 35, which was a week after the last dose. The mice were scored for 21 days post challenge for sickness and death. The immune response was also characterized using usual methods like ELISA, Immunofluorescence assays and virological assays like neutralization and challenge experiments. 
     Anti Japanese encephalitis virus response was checked by ELISA. As depicted in  FIGS. 3A ,  3 B and  3 C, it can be seen that the peptides are capable of eliciting an immune response against JE virus, especially if the chimeric peptide is the immunogen. In terms of immune response, the best response was seen in mice immunized with Japanese encephalitis virus vaccine, followed by Chimeric peptide and B cell peptide in that order. 
     In vitro virus neutralization by anti chimeric peptide sera. Neutralization experiments were performed by a plaque reduction assay. Antichimeric peptide sera were diluted 1:50 in culture medium. Fifty microliters of the diluted serum and an equal volume of virus pool containing 48 plaque forming units were mixed and incubated at 37° C. for one hour. Virus antibody mixture was added on to the preformed Porcine stable kidney cells in 24 well plates. After one hour adsorption, a caboxymethyl cellulose overlay was added and plates were incubated for 3 days. The percentage plaque inhibition was calculated using virus plaque numbers without antibody.  FIG. 4  shows the efficiency of the anti-peptide sera to neutralize the virus. As seen from the figures, only antibodies raised against the chimeric peptides in C3H mice are capable of neutralizing Japanese encephalitis virus. 
     Protection of Mice Immunized with Chimeric Peptide from Lethal Challenge of Japanese Encephalitis Virus 
     Since the peptides are potential vaccine candidates, the mice immunized were assayed for their ability to resist the virus challenge. A lethal dose of Japanese encephalitis virus was administered according to the protocol by (Yeolekar &amp; Banerjee 1996 Yeolekar, L R and Banerjee, K. (1996) Immunogenicity of immunostimulating complexes of Japanese encephalitis virus in experimental animals. Acta Virological 40 245-250). Chimeric peptide immune mice were inoculated intraperitoneally with 0.1 ml Japanese encephalitis virus suspension, immediately followed by inoculation of 0.03 ml of 1% starch solution by intracerebral route. The mice were observed for 21 days post challenge. According to the survival curves in  FIG. 5 , it can be seen that the C3H mice that were immunized with chimeric peptides were able to resist the virus challenge. The other strains of mice (BALB/c or SWISS) were not able to neutralize the virus nor were they able to resist the virus challenge. 
       FIG. 5  shows survival of chimeric peptide KK immune mice from Japanese encephalitis virus challenge with a challenge virus dose of 2.3 log LD 50. 
     The data presented in this document clearly indicate that it is possible to protect mice from lethal challenge of Japanese encephalitis virus. The data also indicate that in addition to the peptide epitope 149-SENHGNYSAQVGASQAAKF-167 (SEQ ID NO:3), B cell epitopes 39-PTLDVRMINI-48 (SEQ ID NO:80) and 269-AIVVEYSSSVKLT-281 (SEQ ID NO:81) can also induce neutralizing antibodies to Japanese encephalitis virus and thus are unique. Data have also been presented to indicate that peptides JE Egp 346-HVLGRLTTVN-355 (SEQ ID NO:67), JE 17-EAWLDSTKAT-26 (SEQ ID NO:68), JE NS1 297-SVRTTTDSGKLITD-310 (SEQ ID NO:71), JE NS1 156-EDFGFGITSTRV-167 (SEQ ID NO:72), JE NS1 404-TDLARYVVL-412 (SEQ ID NO:73), JE Egp 429-SIGGVFNSIGKAVHQ-443 (SEQ ID NO:77) can be used as T helper cell peptides. As chimeric T helper B cell peptide has conclusively been shown to protect mice from lethal challenge, it is claimed that any or all the combinations of B cell and T helper peptides would be useful in developing vaccine against Japanese encephalitis virus. 
     Immuno-potentiation of Antibody Response by T Helper Peptides. 
     We ascertained the potentiation of the immune response by T helper peptides before chimeric peptides were synthesized. It has been observed that priming by T helper peptides can have a boosting effect on the antibody response, especially when it contains the priming T helper peptide. This method allows rapid screening of T helper peptides for desired effect. Mice were thus primed with 50 μg T helper peptides in aluminum hydroxide followed by two booster doses two weeks apart by BPL inactivated JE virus mouse brain antigen. The peptides used were: 
     
       
         
           
               
               
               
               
            
               
                 JE Mem 
                  17-EAWLDSTKAT-26 
                 (SEQ ID NO:68) 
                   
               
               
                   
               
               
                 JE NS1 
                 297-SVRTTTDSGKLITD-310 
                 (SEQ ID NO:71) 
               
               
                 and 
               
               
                   
               
               
                 JE Egp 
                 439-SIGGVFNSIGKAVHQ-455. 
                 (SEQ ID NO:77) 
               
            
           
         
       
     
     Sera were collected two weeks after each booster and neutralization was carried out by CPE assay with JE virus in PS cells. In parallel experiments, mouse brain antigen was mixed with T helper peptide in booster doses. The results depicted in  FIGS. 6 and 7  indicate that priming by T helper peptides from both structural and non-structural proteins can enhance a virus neutralizing antibody response. The augmentation was seen both in BALB/c and Swiss mice. Incorporation of T helper peptides in booster doses further augmented the neutralizing antibody responses. These results suggest that peptides from Nonstructural protein-1 (NS-1) and Membrane (Mem) are useful in the preparation of chimeric peptides to induce virus neutralizing and protective antibody response. 
     Protection of chimeric peptide immunized mice from lethal JEV challenge. 
     The data shown above clearly demonstrate that T helper peptides from NS-1 and Mem proteins can augment the antibody titers against whole virus antigen. Thus, to achieve the helper effect, T helper epitopes were co-linearly synthesized with antibody inducing epitopes from Egp (Chimeric peptides). These chimeric peptides were expected to induce neutralizing antibodies. BALB/c, C3H, Swiss Mice were immunized with following peptides in 2Al(OH) 3  adjuvant on 0, 14, 28 days S.C. and were bled on 34 th  day. 
     
       
         
           
               
               
               
            
               
                 1. NHGN-NS1 
                   
                   
               
               
                 NHGNYSAQVGASQ-SVRTTTDSGKLITDG 
                 (SEQ ID NO:86) 
               
               
                   
               
               
                 2. NHGN-Mem 
               
               
                 NHGNYSAQVGASQ-EAWLDSTKATG 
                 (SEQ ID NO:87) 
               
               
                   
               
               
                 3. TLD-Mem 
               
               
                 PTLDVRMINIE-EAWLDSTKATG 
                 (SEQ ID NO:88) 
               
               
                   
               
               
                 4. NS-1-TLD 
               
               
                 SVRTTTDSGKLITDG-TLDVRMINIE 
                 (SEQ ID NO:89) 
               
            
           
         
       
     
     Controls included mice immunized with PBS in Al(OH) and JE vaccine (Kasuali). The reactivity of sera with purified JE virus was tested by ELISA. Mice were challenged with 2 log LD 50 JEV 733913 and observed for 21 days. 
     The results, as depicted in  FIG. 8 , indicate that all the three strains of mice could produce JE virus reactive antibodies after immunization with chimeric peptides containing NS-1 and Mem T helper epitopes. 
     The results of the challenge studies, as depicted in  FIG. 9 , showed that most of the chimeric peptides tested could protect mice from lethal challenge of JE virus. The best results were obtained with the peptide containing TLD as the B cell epitope along with NS-1 T helper epitopes. It should be noted that even though other peptides did not protect mice as effectively, the average survival time in all these cases was very high compared to a PBS control. Routine variations can be made to optimize the use of these peptides as vaccines, e.g., altering the doses, using these peptides in combinations, and changing the immunization schedules. Additional well-known methods for increasing immunogenicity, e.g. the addition of suitable adjuvants, will be evident to the skilled worker. 
     One aspect of the invention is a synthetic polypeptide consisting of a B-cell epitope (e.g. a virus-neutralizing antibody-inducing B-cell epitope) linked to a T-helper cell epitope, wherein the epitopes are from proteins of Japanese Encephalitis Virus. The term “linked,” as used herein, means that the epitopes (peptides) are joined, either directly or indirectly, by an amino-carboxy bond. For example, the two epitopes can be joined directly, or they can be joined via a spacer of, e.g., between about 1 and 5 amino acids. In embodiments of the invention, the B-cell epitope has the sequence NHGNYSAQVGASQ (SEQ ID NO:46), and the T-helper cell epitope has the sequence SVRTTTDSGKLITDG (SEQ ID NO:82); the B-cell epitope has the sequence NHGNYSAQVGASQ (SEQ ID NO:46), and the T-helper cell epitope has the sequence EAWLDSTKATG (SEQ ID NO:83); the B-cell epitope has the sequence PTLDVRMINIE (SEQ ID NO:84), and the T-helper cell epitope has the sequence EAWLDSTKATG (SEQ ID NO:83); or the B-cell epitope has the sequence TLDVRMINIE (SEQ ID NO:85), and the T-helper cell epitope has the sequence SVRTTTDSGKLITDG (SEQ ID NO:82). In embodiments of the invention, the synthetic polypeptide has the sequence NHGNYSAQVGASQ-SVRTTTDSGKLITDG (SEQ ID NO:86); NHGNYSAQVGASQ-EAWLDSTKATG (SEQ ID NO:87); PTLDVRMINIE-EAWLDSTKATG (SEQ ID NO:88), or SVRTTTDSGKLITDG-TLDVRMINIE (SEQ ID NO:89). 
     Another aspect of the invention is an immunogenic composition comprising one or more of the synthetic polypeptides noted above. An “immunogenic composition,” as used herein, refers to a composition that can elicit an immune response. The response need not be a protective response against infection by Japanese encephalitis virus. in embodiments of the invention, the immunogenic composition is protective against infection by Japanese encephalitis virus. 
     From the foregoing description, one skilled in the art can easily ascertain the essential characteristics of this invention, and without departing from the spirit and scope thereof, can make changes and modifications of the invention to adapt it to various usage and conditions and to utilize the present invention to its fullest extent. The preceding preferred specific embodiments are to be construed as merely illustrative, and not limiting of the scope of the invention in any way whatsoever. The entire disclosure of all applications, patents, and publications (including U.S. Ser. No. 10/250,468, filed Nov. 4, 2003) cited above and in the figures are hereby incorporated in their entirety by reference.