Patent Publication Number: US-2021186026-A1

Title: Methylobacterium Compositions and Plants, Plant Parts and Seeds Coated Therewith

Description:
CROSS REFERENCE TO RELATED APPLICATIONS 
     This patent application is a Continuation of U.S. patent application Ser. No. 16/238,037, filed Jan. 2, 2019, which is a Divisional of U.S. patent application Ser. No. 15/101,374, filed Jun. 2, 2016, now U.S. Pat. No. 10,212,939, issued Feb. 26, 2019, which is a 35 U.S.C. § 371 US national stage application of International Patent Application PCT/US2014/068558, filed Dec. 4, 2014, which claims the benefit of U.S. Provisional Patent Application No. 61/954,840, filed Mar. 18, 2014, and U.S. Provisional Patent Application No. 61/911,516, filed Dec. 4, 2013, which are each incorporated herein by reference in their entireties. 
    
    
     SEQUENCE LISTING STATEMENT 
     A sequence listing containing the file named 53907_179989_SL.txt which is 15,167,424 bytes (measured in MS-Windows®) and created on Jan. 2, 2019, comprises 10,250 sequences, is provided herewith via the USPTO&#39;s EFS system, and is incorporated herein by reference in its entirety. 
     BACKGROUND 
     One-carbon organic compounds such as methane and methanol are found extensively in nature, and are utilized as carbon sources by bacteria classified as methanotrophs and methylotrophs. Methanotrophic bacteria include species in the genera  Methylobacter, Methylomonas, Methylomicrobium, Methylococcus, Methylosinus, Methylocystis, Methylosphaera, Methylocaldum , and  Methylocella  (Lidstrom, 2006). Methanotrophs possess the enzyme methane monooxygenase, that incorporates an atom of oxygen from 02 into methane, forming methanol. All methanotrophs are obligate one-carbon utilizers that are unable to use compounds containing carbon-carbon bonds. Methylotrophs, on the other hand, can also utilize more complex organic compounds, such as organic acids, higher alcohols, sugars, and the like. Thus, methylotrophic bacteria are facultative methylotrophs. Methylotrophic bacteria include species in the genera  Methylobacterium, Hyphomicrobium, Methylophilus, Methylobacillus, Methylophaga, Aminobacter, Methylorhabdus, Methylopila, Methylosulfonomonas, Marinosulfonomonas, Paracoccus, Xanthobacter, Ancylobacter  (also known as  Microcyclus ),  Thiobacillus, Rhodopseudomonas, Rhodobacter, Acetobacter, Bacillus, Mycobacterium, Arthobacter , and  Nocardia  (Lidstrom, 2006). 
     Most methylotrophic bacteria of the genus  Methylobacterium  are pink-pigmented. They are conventionally referred to as PPFM bacteria, being pink-pigmented facultative methylotrophs. Green (2005, 2006) identified twelve validated species in the genus  Methylobacterium , specifically  M. aminovorans, M. chloromethanicum, M. dichloromethanicum, M. extorquens, M. fujisawaense, M. mesophilicum, M. organophilum, M. radiotolerans, M. rhodesianum, M. rhodinum, M. thiocyanatum , and  M. zatmanii . However,  M. nidulans  is a nitrogen-fixing  Methylobacterium  that is not a PPFM (Sy et al., 2001).  Methylobacterium  are ubiquitous in nature, being found in soil, dust, fresh water, sediments, and leaf surfaces, as well as in industrial and clinical environments (Green, 2006). 
     SUMMARY 
     Provided herein are compositions comprising  Methylobacterium  that are depleted of substances that promote growth of resident bacteria on the plant or seed, compositions comprising a solid substance with adherent  Methylobacterium  grown thereon or an emulsion having  Methylobacterium  grown therein, compositions comprising certain  Methylobacterium  strains, methods of using the compositions to improve lettuce production, and methods of making the compositions. Such compositions are in certain instances referred to herein as simply “ Methylobacterium -containing compositions”. In certain embodiments, the  Methylobacterium  in the composition or that is used is strain NLS0020, NLS0066, NLS0017, NLS0065, NLS0089, NLS0042, or NLS0068. In certain embodiments, the  Methylobacterium  in the composition or that is used is  Methylobacterium  is selected from the group consisting of NLS0017 (NRRL B-50931), NLS0020 (NRRL B-50930), NLS0021 (NRRL B-50939), NLS0037 (NRRL B-50941), NLS0038 (NRRL B-50942), NLS0042 (NRRL B-50932), NLS0046 (NRRL B-50929), NLS0062 (NRRL B-50937), NLS0064 (NRRL B-50938), NLS0065 (NRRL B-50935), NLS0066 (NRRL B-50940), NLS0068 (NRRL B-50934), NLS0069 (NRRL B-50936), NLS0089 (NRRL B-50933), and derivatives thereof. In certain embodiments, the  Methylobacterium  in the composition or that is used is a  Methylobacterium  that has at least one gene encoding a protein that is orthologous to a protein having an amino acid sequence of SEQ ID NO: 1-5125. In certain embodiments, the  Methylobacterium  has at least one gene encoding a protein that is orthologous to a reference protein of Table 7. In certain embodiments, the  Methylobacterium  sp. can contain at least one gene encoding a protein that is orthologous to a reference protein having the amino acid sequence of 13, 14, 23, 27, 28, 30, 40, 43, 44, 51, 52, 57, 76, 85, 127, 197, 198, 199, 1094, 1100, 1106, 1114, 1116, 1117, 1120, 1180, 2180, 2190, 2463, 2467, 2468, 2471, 2510, 2515, 2676, 2971, 3357, 3370, 3372, 3394, 3427, 3429, 3430, 3950, 3952, 3968, 3987, 3996, 4004, 4006, and/or 4067 of Table 7. In certain embodiments the  Methylobacterium  has at least one gene encoding a protein that is orthologous to a reference protein is selected from the group consisting of SEQ ID NO: 13, 14, 23, 1094, 1100, 1106, 2467, 2468, 3357, 3370, and/or 3968. In certain embodiments the  Methylobacterium  has at least one gene encoding a protein that is orthologous to a reference protein is selected from the group consisting of SEQ ID NO: 1100, 1116, 2471 and/or 3950. In certain embodiments, the  Methylobacterium  in the composition or that is used is strain NLS0020, NLS0066, NLS0017, NLS0065, or NLS0089 and the composition is used to treat a lettuce seed. 
     Methods for improving lettuce production comprising applying a coating or partial coating of a composition comprising  Methylobacterium  to a lettuce plant, a part thereof, or to a lettuce seed, wherein said composition comprises: (a) a solid substance with adherent  Methylobacterium  grown thereon; (b) an emulsion having  Methylobacterium  grown therein; (c) certain  Methylobacterium  strains selected from the group consisting of NLS0017 (NRRL B-50931), NLS0020 (NRRL B-50930), NLS0021 (NRRL B-50939), NLS0037 (NRRL B-50941), NLS0038 (NRRL B-50942), NLS0042 (NRRL B-50932), NLS0046 (NRRL B-50929), NLS0062 (NRRL B-50937), NLS0064 (NRRL B-50938), NLS0065 (NRRL B-50935), NLS0066 (NRRL B-50940), NLS0068 (NRRL B-50934), NLS0069 (NRRL B-50936), NLS0089 (NRRL B-50933), and derivatives thereof and an agriculturally acceptable adjuvant, excipient, or combination thereof; or (d) a  Methylobacterium  that has at least one gene encoding at least one protein that is orthologous to a protein having an amino acid sequence of SEQ ID NO: 1-5125 and an agriculturally acceptable adjuvant, excipient, or combination thereof; and wherein said lettuce plant or lettuce plant grown from said seed exhibits a trait improvement selected from the group consisting of an increased rate of leaf growth, an increased rate of root growth, increased total biomass production, increased seed yield, decreased cycle time, and combinations thereof when compared to an untreated control lettuce plant or a control lettuce plant grown from an untreated seed are provided herein. In certain embodiments, the composition comprises  Methylobacterium  at a titer of about 1×10 6  CFU/gm to about 1×10 14  CFU/gm for a solid composition or at a titer of about 1×10 6  CFU/mL to about 1×10 11  CFU/mL for a liquid composition containing the solid substance or for the emulsion. In certain embodiments, the  Methylobacterium  has at least one gene encoding at least one protein that is orthologous to a protein having an amino acid sequence of SEQ ID NO: 1-5125. In certain embodiments, the  Methylobacterium  has at least one gene encoding a protein that is orthologous to a reference protein of Table 7. In certain embodiments, the  Methylobacterium  sp. can contain at least one gene encoding a protein that is orthologous to a reference protein having the amino acid sequence of 13, 14, 23, 27, 28, 30, 40, 43, 44, 51, 52, 57, 76, 85, 127, 197, 198, 199, 1094, 1100, 1106, 1114, 1116, 1117, 1120, 1180, 2180, 2190, 2463, 2467, 2468, 2471, 2510, 2515, 2676, 2971, 3357, 3370, 3372, 3394, 3427, 3429, 3430, 3950, 3952, 3968, 3987, 3996, 4004, 4006, and/or 4067 of Table 7. In certain embodiments the  Methylobacterium  has at least one gene encoding a protein that is orthologous to a reference protein is selected from the group consisting of SEQ ID NO: 13, 14, 23, 1094, 1100, 1106, 2467, 2468, 3357, 3370, and/or 3968. In certain embodiments the  Methylobacterium  has at least one gene encoding a protein that is orthologous to a reference protein is selected from the group consisting of SEQ ID NO: 1100, 1116, 2471 and/or 3950. In certain embodiments, the  Methylobacterium  in the composition or that is used is selected from the group consisting of NLS0017 (NRRL B-50931), NLS0020 (NRRL B-50930), NLS0021 (NRRL B-50939), NLS0037 (NRRL B-50941), NLS0038 (NRRL B-50942), NLS0042 (NRRL B-50932), NLS0046 (NRRL B-50929), NLS0062 (NRRL B-50937), NLS0064 (NRRL B-50938), NLS0065 (NRRL B-50935), NLS0066 (NRRL B-50940), NLS0068 (NRRL B-50934), NLS0069 (NRRL B-50936), NLS0089 (NRRL B-50933), and derivatives thereof. In certain embodiments, the  Methylobacterium  in the composition or that is used is selected from the group consisting of NLS0017, NLS0037, NLS0066, NLS0020, NLS0042, NLS0065, NLS0089, NLS0046, NLS0021. NLS0069, NLS0068, NLS0064, NLS0062, NLS0038, and derivatives thereof. In certain embodiments, the  Methylobacterium  has at least one polymorphic DNA element that is present in at least one  Methylobacterium  strain selected from the group consisting of NLS0020, NLS0066, NLS0017, NLS0065, NLS0089, NLS0042, and NLS0068 provided herein that improve lettuce production but that is absent from  Methylobacterium  sp. that do not improve lettuce production. In certain embodiments, the composition is applied to a lettuce seed and the least one polymorphic DNA element is present in at least one  Methylobacterium  strain selected from the group consisting of NLS0020, NLS0066, NLS0017, NLS0065, and NLS0089. In certain embodiments, the composition is applied to a lettuce seed and the  Methylobacterium  is selected from the group consisting of NLS0020, NLS0066, NLS0017, NLS0065, and NLS0089. In certain embodiments, the composition is applied to a lettuce plant or a part thereof and the least one polymorphic DNA element is present in at least one  Methylobacterium  strain selected from the group consisting of NLS0042, NLS0017, NLS0020, and NLS0068. In certain embodiments, the composition is applied to a lettuce plant or a part thereof and the  Methylobacterium  is selected from the group consisting of NLS0042, NLS0017, NLS0020, and NLS0068. In certain embodiments, the applied composition coats or partially coats said plant or a part thereof, or said seed. In certain embodiments, the methods further comprise: (i) growing said lettuce plant or lettuce plant grown from said seed; and/or (ii) harvesting leaves or seed from said lettuce plant or lettuce plant grown from said seed. In certain embodiments, the solid substance with adherent  Methylobacterium  is not a substance that promotes growth of resident microorganisms on the lettuce plant, the part thereof, or the lettuce seed. In certain embodiments, the composition comprises an agriculturally acceptable adjuvant and/or excipient. In certain embodiments of any of the aforementioned methods, the composition is depleted of substances that promote growth of resident microorganisms on said plant or seed. Also provided are lettuce plant parts or lettuce seeds obtained by any of the aforementioned methods and that are coated or partially coated with a composition comprising  Methylobacterium.    
     Methods for improving lettuce plant production comprising applying a composition comprising  Methylobacterium  to a lettuce plant, a part thereof, or lettuce seed, wherein said composition is depleted of substances that promote growth of resident microorganisms on said plant or seed and wherein said plant or plant grown from said seed exhibits a trait improvement selected from the group consisting of an increased rate of leaf growth, an increased rate of root growth, increased total biomass production, increased seed yield, decreased cycle time, and combinations thereof when compared to an untreated control lettuce plant or a control lettuce plant grown from an untreated seed. In certain embodiments, the composition comprises a solid substance with adherent  Methylobacterium  grown thereon. In certain embodiments, the solid substance is not a substance that promotes growth of resident microorganisms on the lettuce plant, the part thereof, or the lettuce seed. In certain embodiments, the composition comprises  Methylobacterium  at a titer of about 1×10 6  CFU/gm to about 1×10 14  CFU/gm. In certain embodiments, the composition comprises a liquid, a solid substance with  Methylobacterium  adhered thereto in a liquid, a solid substance with  Methylobacterium  adhered thereto in an emulsion, or an emulsion. In certain embodiments, the composition comprises  Methylobacterium  at a titer of about 1×10 6  CFU/mL to about 1×10 11  CFU/mL. In certain embodiments, the methods further comprise: (i) growing said lettuce plant or lettuce plant grown from said seed; and/or (ii) harvesting leaves or seed from said lettuce plant or lettuce plant grown from said seed. In certain embodiments, the  Methylobacterium  has at least one gene encoding at least one protein that is orthologous to a protein having an amino acid sequence of SEQ ID NO: 1-5125. In certain embodiments, the  Methylobacterium  has at least one gene encoding a protein that is orthologous to a reference protein of Table 7. In certain embodiments, the  Methylobacterium  sp. can contain at least one gene encoding a protein that is orthologous to a reference protein having the amino acid sequence of 13, 14, 23, 27, 28, 30, 40, 43, 44, 51, 52, 57, 76, 85, 127, 197, 198, 199, 1094, 1100, 1106, 1114, 1116, 1117, 1120, 1180, 2180, 2190, 2463, 2467, 2468, 2471, 2510, 2515, 2676, 2971, 3357, 3370, 3372, 3394, 3427, 3429, 3430, 3950, 3952, 3968, 3987, 3996, 4004, 4006, and/or 4067 of Table 7. In certain embodiments the  Methylobacterium  has at least one gene encoding a protein that is orthologous to a reference protein is selected from the group consisting of SEQ ID NO: 13, 14, 23, 1094, 1100, 1106, 2467, 2468, 3357, 3370, and/or 3968. In certain embodiments the  Methylobacterium  has at least one gene encoding a protein that is orthologous to a reference protein is selected from the group consisting of SEQ ID NO: 1100, 1116, 2471 and/or 3950. In certain embodiments, the  Methylobacterium  in the composition or that is used is selected from the group consisting of NLS0017 (NRRL B-50931), NLS0020 (NRRL B-50930), NLS0021 (NRRL B-50939), NLS0037 (NRRL B-50941), NLS0038 (NRRL B-50942), NLS0042 (NRRL B-50932), NLS0046 (NRRL B-50929), NLS0062 (NRRL B-50937), NLS0064 (NRRL B-50938), NLS0065 (NRRL B-50935), NLS0066 (NRRL B-50940), NLS0068 (NRRL B-50934), NLS0069 (NRRL B-50936), NLS0089 (NRRL B-50933), and derivatives thereof. In certain embodiments, the  Methylobacterium  in the composition or that is used is selected from the group consisting of NLS0017, NLS0037, NLS0066, NLS0020, NLS0042, NLS0065, NLS0089, NLS0046, NLS0021. NLS0069, NLS0068, NLS0064, NLS0062, NLS0038, and derivatives thereof. In certain embodiments the reference protein is selected from the group consisting of SEQ ID NO: 11000, 1116, 2471 and/or 3950. In certain embodiments, the  Methylobacterium  has at least one polymorphic DNA element that is present in at least one  Methylobacterium  strain selected from the group consisting of NLS0020, NLS0066, NLS0017, NLS0065, NLS0089, NLS0042, and NLS0068 provided herein that improve lettuce production but that is absent from  Methylobacterium  sp. that do not improve lettuce production. In certain embodiments, the composition is applied to a lettuce seed and the least one polymorphic DNA element is present in at least one  Methylobacterium  strain selected from the group consisting of NLS0020, NLS0066, NLS0017, NLS0065, and NLS0089. In certain embodiments, the composition is applied to a lettuce seed and the  Methylobacterium  is selected from the group consisting of NLS0020, NLS0066, NLS0017, NLS0065, and NLS0089. In certain embodiments, the composition is applied to a lettuce plant or a part thereof and the least one polymorphic DNA element is present in at least one  Methylobacterium  strain selected from the group consisting of NLS0042, NLS0017, NLS0020, and NLS0068. In certain embodiments, the composition is applied to a lettuce plant or a part thereof and the  Methylobacterium  is selected from the group consisting of NLS0042, NLS0017, NLS0020, and NLS0068. In certain embodiments of any of the aforementioned methods, the composition coats or partially coats said plant or a part thereof, or said seed. Also provided are lettuce plant parts or lettuce seeds obtained by any of the aforementioned methods and that are coated or partially coated with a composition comprising  Methylobacterium.    
     Compositions comprising: (i) a solid substance with adherent  Methylobacterium  grown thereon wherein said  Methylobacterium  has at least one gene encoding a protein that is orthologous to a protein having an amino acid sequence of SEQ ID NO: 1-5125; (ii) an emulsion with  Methylobacterium  grown therein wherein said  Methylobacterium  has at least one gene encoding a protein that is orthologous to a protein having an amino acid sequence of SEQ ID NO: 1-5125; or (iii) certain  Methylobacterium  strains selected from the group consisting of NLS0017 (NRRL B-50931), NLS0020 (NRRL B-50930), NLS0021 (NRRL B-50939), NLS0037 (NRRL B-50941), NLS0038 (NRRL B-50942), NLS0042 (NRRL B-50932), NLS0046 (NRRL B-50929), NLS0062 (NRRL B-50937), NLS0064 (NRRL B-50938), NLS0065 (NRRL B-50935), NLS0066 (NRRL B-50940), NLS0068 (NRRL B-50934), NLS0069 (NRRL B-50936), NLS0089 (NRRL B-50933), and derivatives thereof and an agriculturally acceptable adjuvant, excipient, or combination thereof are provided herein. Also provided herein are compositions comprising: (a) (i) a solid substance with adherent  Methylobacterium  grown thereon; (ii) an emulsion with  Methylobacterium  grown therein; or (iii) a  Methylobacterium  that has at least one gene encoding a protein that is orthologous to a protein having an amino acid sequence of SEQ ID NO: 1-5125; and (b) an agriculturally acceptable excipient, adjuvant, or combination thereof. In certain embodiments, the  Methylobacterium  has at least one gene encoding a protein that is orthologous to a reference protein of Table 7. In certain embodiments, the reference protein is selected from the group consisting of SEQ ID NO: 13, 14, 23, 1094, 1100, 1106, 2467, 2468, 3357, 3370, and/or 3968. In certain embodiments, the  Methylobacterium  is selected from the group consisting of NLS0017 (NRRL B-50931), NLS0020 (NRRL B-50930), NLS0037 (NRRL B-50941), NLS0042 (NRRL B-50932), NLS0065 (NRRL B-50935), NLS0066 (NRRL B-50940), and derivatives thereof. Also provided are compositions comprising: (i) a solid substance with adherent  Methylobacterium  grown thereon; or (ii) an emulsion with  Methylobacterium  grown therein, wherein said  Methylobacterium  has at least one polymorphic DNA element that is present in at least one  Methylobacterium  strain selected from the group consisting of NLS0020, NLS0066, NLS0017, NLS0065, NLS0089, NLS0042, and NLS0068 provided herein that improve lettuce production but that is absent from  Methylobacterium  sp. that do not improve lettuce production. In certain embodiments, the at least one polymorphic DNA element is present in at least one  Methylobacterium  strain selected from the group consisting of NLS0020, NLS0066, NLS0017, NLS0065, and NLS0089. In certain embodiments, the least one polymorphic DNA element is present in at least one  Methylobacterium  strain selected from the group consisting of NLS0042, NLS0017, NLS0020, and NLS0068. In certain embodiments, the  Methylobacterium  is selected from the group consisting of NLS0020, NLS0066, NLS0017, NLS0065, NLS0089, NLS0042, and NLS0068. In certain embodiments, the composition is depleted of substances that promote growth of resident microorganisms on a plant or seed. In certain embodiments, the substance that promotes growth of resident microorganisms on a plant or seed is selected from the group consisting of a carbon source, a nitrogen source, a phosphorous source, a sulfur source, a magnesium source, and combinations thereof. In certain embodiments, the compositions further comprise an agriculturally acceptable adjuvant and/or excipient. In certain embodiments, the solid substance with adherent  Methylobacterium  grown thereon has a  Methylobacterium  titer of at least about 5×10 8  CFU/gm to at least about 1×10 14  CFU/gm. In certain embodiments, the  Methylobacterium  is selected from the group consisting of NLS0020, NLS0066, NLS0017, NLS0065, and NLS0089. In certain embodiments, the aforementioned compositions are adapted for use in treating a plant or seed or is used to treat a plant or seed. Also provided herein is a lettuce plant part or lettuce seed that is coated or partially coated with any of the aforementioned the compositions. In certain embodiments, the coated or partially coated lettuce plant part or lettuce seed is obtained by any of the aforementioned methods. 
     Also provided is an isolated  Methylobacterium  selected from the group consisting of NLS0017 (NRRL B-50931), NLS0020 (NRRL B-50930), NLS0021 (NRRL B-50939), NLS0037 (NRRL B-50941), NLS0038 (NRRL B-50942), NLS0042 (NRRL B-50932), NLS0046 (NRRL B-50929), NLS0062 (NRRL B-50937), NLS0064 (NRRL B-50938), NLS0065 (NRRL B-50935), NLS0066 (NRRL B-50940), NLS0068 (NRRL B-50934), NLS0069 (NRRL B-50936), NLS0089 (NRRL B-50933), and derivatives thereof. 
     Also provided are compositions comprising: (i) an isolated  Methylobacterium  selected from the group consisting of NLS0017 (NRRL B-50931), NLS0020 (NRRL B-50930), NLS0021 (NRRL B-50939), NLS0037 (NRRL B-50941), NLS0038 (NRRL B-50942), NLS0042 (NRRL B-50932), NLS0046 (NRRL B-50929), NLS0062 (NRRL B-50937), NLS0064 (NRRL B-50938), NLS0065 (NRRL B-50935), NLS0066 (NRRL B-50940), NLS0068 (NRRL B-50934), NLS0069 (NRRL B-50936), NLS0089 (NRRL B-50933), derivatives thereof; and (ii) an agriculturally acceptable adjuvant, excipient, or combination thereof. 
     Also provided are plants, plant parts, and plant seeds that are coated or partially coated with any of the aforementioned compositions. In certain embodiments, a lettuce plant, plant part, or plant seed is coated or partially coated with the aforementioned compositions. 
     Also provided herein are methods of identifying compositions, plant parts, plant seeds, or processed plant products comprising  Methylobacterium  sp. NLS0017 (NRRL B-50931), NLS0020 (NRRL B-50930), NLS0037 (NRRL B-50941), NLS0042 (NRRL B-50932), NLS0065 (NRRL B-50935), or NLS0066 (NRRL B-50940) by assaying for the presence of nucleic acid sequences contained in SEQ ID NO: 5126-10250 in those materials. In certain embodiments, such methods can comprise subjecting a sample suspected of containing  Methylobacterium  sp. NLS0017 (NRRL B-50931), NLS0020 (NRRL B-50930), NLS0037 (NRRL B-50941), NLS0042 (NRRL B-50932), NLS0065 (NRRL B-50935), or NLS0066 (NRRL B-50940) to a nucleic acid analysis technique and determining that the sample contains one or more nucleic acid containing a sequence of at least about 20, 50, 100, 200, 500, or a 1000 nucleotides that is identical to at least one of SEQ ID NO: 5126-10250, wherein the presence of a sequence that is identical to at least one of SEQ ID NO: 5126-6211 is indicative of the presence of NLS017, wherein the presence of a sequence that is identical to at least one of SEQ ID NO: 6212-7301 is indicative of the presence of NLS020, wherein the presence of a sequence that is identical to at least one of SEQ ID NO: 7302-7586 is indicative of the presence of NLS037, wherein the presence of a sequence that is identical to at least one of SEQ ID NO: 7587-8472 is indicative of the presence of NLS042, wherein the presence of a sequence that is identical to at least one of SEQ ID NO: 8473-9074 is indicative of the presence of NLS065, and wherein the presence of a sequence that is identical to at least one of SEQ ID NO: 9075-10250 is indicative of the presence of NLS066. Such nucleic acid analyses include, but are not limited to, techniques based on nucleic acid hybridization, polymerase chain reactions, mass spectroscopy, nanopore based detection, branched DNA analyses, combinations thereof, and the like. 
     Also provided herein are methods of identifying  Methylobacterium  sp. that can confer useful traits to plants by assaying for the presence of nucleic acid sequences contained in SEQ ID NO: 5126-10250 in the  Methylobacterium  sp. In certain embodiments, such methods can comprise subjecting a candidate  Methylobacterium  sp. to a nucleic acid analysis technique and determining that the sample contains one or more nucleic acid containing a sequence of at least about 20, 50, 100, 200, 500, or a 1000 nucleotides that is identical to at least one of SEQ ID NO: 5126-10250 indicates that the candidate  Methylobacterium  sp. that can confer a useful traits to a plant. Such nucleic acid analyses include, but are not limited to, techniques based on nucleic acid hybridization, polymerase chain reactions, mass spectroscopy, nanopore based detection, branched DNA analyses, combinations thereof, and the like. 
    
    
     DESCRIPTION 
     Definitions 
     As used herein, the phrases “adhered thereto” and “adherent” refer to  Methylobacterium  that are associated with a solid substance by growing, or having been grown, on a solid substance. 
     As used herein, the phrase “agriculturally acceptable adjuvant” refers to a substance that enhances the performance of an active agent in a composition for treatment of plants and/or plant parts. In certain compositions, an active agent can comprise a mono-culture or co-culture of  Methylobacterium.    
     As used herein, the phrase “agriculturally acceptable excipient” refers to an essentially inert substance that can be used as a diluent and/or carrier for an active agent in a composition for treatment of plants and/or plant parts. In certain compositions, an active agent can comprise a mono-culture or co-culture of  Methylobacterium.    
     As used herein, the term “ Methylobacterium ” refers to bacteria that are facultative methylotrophs of the genus  Methylobacterium . The term  Methylobacterium , as used herein, thus does not encompass includes species in the genera  Methylobacter, Methylomonas, Methylomicrobium, Methylococcus, Methylosinus, Methylocystis, Methylosphaera, Methylocaldum , and  Methylocella , which are obligate methanotrophs. 
     As used herein, the phrase “co-culture of  Methylobacterium ” refers to a  Methylobacterium  culture comprising at least two strains of  Methylobacterium  or at least two species of  Methylobacterium.    
     As used herein, the phrase “contaminating microorganism” refers to microorganisms in a culture, fermentation broth, fermentation broth product, or composition that were not identified prior to introduction into the culture, fermentation broth, fermentation broth product, or composition. 
     As used herein, the phrase “derivatives thereof”, when used in the context of a  Methylobacterium  isolate, refers to any strain that is obtained from the  Methylobacterium  isolate. Derivatives of a  Methylobacterium  isolate include, but are not limited to, variants of the strain obtained by selection, variants of the strain selected by mutagenesis and selection, and a genetically transformed strain obtained from the  Methylobacterium  isolate. 
     As used herein, the term “emulsion” refers to a colloidal mixture of two immiscible liquids wherein one liquid is the continuous phase and the other liquid is the dispersed phase. In certain embodiments, the continuous phase is an aqueous liquid and the dispersed phase is liquid that is not miscible, or partially miscible, in the aqueous liquid. 
     As used herein, the phrase “essentially free of contaminating microorganisms” refers to a culture, fermentation broth, fermentation product, or composition where at least about 95% of the microorganisms present by amount or type in the culture, fermentation broth, fermentation product, or composition are the desired  Methylobacterium  or other desired microorganisms of pre-determined identity. 
     As used herein, the phrase “inanimate solid substance” refers to a substance which is insoluble or partially soluble in water or aqueous solutions and which is either non-living or which is not a part of a still-living organism from which it was derived. 
     As used herein, the phrase “mono-culture of  Methylobacterium ” refers to a  Methylobacterium  culture consisting of a single strain of  Methylobacterium.    
     As used herein, the term “peptide” refers to any polypeptide of 50 amino acid residues or less. 
     As used herein, the term “lettuce” refers to  Lactuca  sp. plants.  Lactuca  sp. plants include, but are not limited to,  Lactuca biennis, Lactuca canadensis, Lactuca floridana, Lactuca graminifolia, Lactuca hirsuta, Lactuca indica, Lactuca ludoviciana, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca terrae - novae, Lactuca virosa , and  Lactuca  X  morssii  species. 
     As used herein, the term “protein” refers to any polypeptide having 51 or more amino acid residues. 
     As used herein, a “pesticide” refers to an agent that is insecticidal, fungicidal, nematocidal, bacteriocidal, or any combination thereof. 
     As used herein, the phrase “bacteriostatic agent” refers to agents that inhibit growth of bacteria but do not kill the bacteria. 
     As used herein, the phrase “pesticide does not substantially inhibit growth of said  Methylobacterium ” refers to any pesticide that when provided in a composition comprising a fermentation product comprising a solid substance wherein a mono-culture or co-culture of  Methylobacterium  is adhered thereto, results in no more than a 50% inhibition of  Methylobacterium  growth when the composition is applied to a plant or plant part in comparison to a composition lacking the pesticide. In certain embodiments, the pesticide results in no more than a 40%, 20%, 10%, 5%, or 1% inhibition of  Methylobacterium  growth when the composition is applied to a plant or plant part in comparison to a composition lacking the pesticide. 
     As used herein, the term “PPFM bacteria” refers without limitation to bacterial species in the genus  Methylobacterium  other than  M. nodulans.    
     As used herein, the phrase “solid substance” refers to a substance which is insoluble or partially soluble in water or aqueous solutions. 
     As used herein, the phrase “solid phase that can be suspended therein” refers to a solid substance that can be distributed throughout a liquid by agitation. 
     As used herein, the term “non-regenerable” refers to either a plant part or processed plant product that cannot be regenerated into a whole plant. 
     As used herein, the phrase “substantially all of the solid phase is suspended in the liquid phase” refers to media wherein at least 95%, 98%, or 99% of solid substance(s) comprising the solid phase are distributed throughout the liquid by agitation. 
     As used herein, the phrase “substantially all of the solid phase is not suspended in the liquid phase” refers to media where less than 5%, 2%, or 1% of the solid is in a particulate form that is distributed throughout the media by agitation. 
     As used herein, the phrase “resident microorganism” refers to resident bacteria, fungi or yeast. 
     As used herein, the phrase “substance that promotes growth of resident microorganisms on a plant or seed” refers to a carbon source, a nitrogen source, a phosphorous source, and combinations thereof. 
     To the extent to which any of the preceding definitions is inconsistent with definitions provided in any patent or non-patent reference incorporated herein by reference, any patent or non-patent reference cited herein, or in any patent or non-patent reference found elsewhere, it is understood that the preceding definition will be used herein. 
       Methylobacterium -Containing Compositions Depleted of Substances that Promote Growth of Resident Bacteria on a Plant or Seed, Methods of their Use, and Methods of Making 
     Compositions comprising  Methylobacterium  that are depleted of substances that promote growth of resident bacteria on a plant or seed, methods of using the compositions to improve lettuce production, and methods of making the compositions are provided herein. In certain embodiments of any of the aforementioned compositions, the composition comprises a solid substance wherein a mono-culture or co-culture of  Methylobacterium  is adhered thereto. In certain embodiments where the  Methylobacterium  is adhered to a solid substance, the composition comprises a colloid formed by the solid substance wherein a mono-culture or co-culture of  Methylobacterium  is adhered thereto and a liquid. In certain embodiments, the colloid is a gel. In certain embodiments of certain aforementioned compositions, composition is an emulsion that does not contain a solid substance. 
     Compositions that comprise a solid substance with adherent  Methylobacterium  grown thereon is provided. In certain embodiments, the adherent  Methylobacterium  can be at a titer of at least about 5×10 8  CFU/gm to at least about 5×10 13  CFU/gm or about 1×10 14  CFU/gm and the composition is depleted of substances that promote growth of resident microorganisms on a plant or seed. 
     In certain embodiments, the compositions containing  Methylobacterium  provided or used herein are depleted of substances that promote growth of the resident microorganisms when one or more of those substances are absent or are essentially absent. In certain embodiments, the composition is depleted of substances that promote growth of the resident microorganisms when those substances are present at a percentage of no more than about 5%, 2%, 1%, 0.5%, 0.2%, or 0.1% of the total mass, mass/total volume, or total volume of the composition. In certain embodiments, substance that promotes growth of resident microorganisms on a plant or seed is selected from the group consisting of a carbon source, a nitrogen source, a phosphorous source, a sulfur source, a magnesium source, and combinations thereof. Carbon sources include, but are not limited to, alcohols, monosaccharides, disaccharides, polysaccharides, lipids, fatty acids, and the like. Alcohols that are depleted include, but are not limited to, methanol, ethanol, glycerol, and the like. Nitrogen sources include, but are not limited to, ammonia and various compounds containing amino groups that can be metabolized by microorganisms. In certain embodiments, the substance that is depleted is a source of two or more of a carbon source, a nitrogen source, a phosphorous source, a sulfur source, and a magnesium source. For example, the composition that is depleted of amino acids or peptides and lacks other carbon or nitrogen sources is depleted for both a carbon and a nitrogen source. In certain embodiments, the composition comprises an agriculturally acceptable adjuvant and/or excipient. 
     Resident microorganisms on the plant or seed include, but are not limited to bacteria, fungi, and yeast. Substances that promote the growth of such microorganisms can be identified by methods including, but not limited to, assaying the plant or seed surface for the amount or number of microorganisms present prior to exposure of the plant or seed to the substance (or to a composition containing the substance), exposing the assayed plant or seed to the substance or composition in parallel with a control composition lacking the substance, and then re-assaying the plant or seed surface for the amount or number of microorganisms present after a suitable time interval and under suitable conditions of temperature to allow growth of the resident microorganisms. Assays for numbers of microorganisms include, but are not limited to, determinations of colony forming units per an amount of plant or seed exposed to the substance and the control. 
     Without seeking to be limited by theory, it is believed that the compositions containing  Methylobacterium  provided or used herein that are depleted of substances that promote growth of the resident microorganisms can result in superior results in comparison to other compositions containing such substances when applied to plants, plant parts, or seeds. Such superior results are believed to include, but are not limited to, improved plant yield, pathogen resistance, insect resistance, fruit ripening and the like. While not seeking to be limited by theory, it is believed that the compositions containing  Methylobacterium  that are depleted of substances that promote growth of the resident microorganisms allow for more efficient and or extensive colonization of the plant, part thereof, or seed as competition for one or more of space or nutrients by the resident microorganisms is reduced. 
     Also provided herein are methods for improving lettuce production that comprise applying any of the aforementioned compositions or  Methylobacterium  provided herein to a lettuce plant, lettuce plant part, or lettuce seed, and, optionally, growing the plant and/or harvesting leaves or seed from the plant or a plant grown from the seed. In certain embodiments, the composition coats or partially coats the lettuce plant, plant part, or seed. The treated lettuce plant or plant grown from the seed exhibits an increased rate of root growth, an increased rate of leaf growth, increased seed production, a decreased cycle time (from seed planting to seed production) and/or increased total biomass compared to an untreated control lettuce plant or control lettuce plant grown from untreated seed, thereby obtaining improved lettuce production. In certain embodiments, application of the composition provides for at least about a 5%, 10%, 15%, 20%, 30% or 40% increase in root growth rate, leaf growth rate, seed production, and/or increased total biomass in the lettuce plant, lettuce plant part, or a lettuce plant derived therefrom in comparison to an untreated control lettuce plant or control lettuce plant grown from an untreated seed. In certain embodiments, application of the composition provides for about a 5% or 10% to about a 15%, 20%, 25%, 30%, 35%, 40%, 45%, 50%, 60%, or 70% increase in root growth rate, leaf growth rate, seed production, and/or increased total biomass in the plant, plant part, or a plant derived therefrom in comparison to an untreated control lettuce plant or control lettuce plant grown from an untreated seed. In certain embodiments, application of the composition provides for at least about a 5%, 10%, 15%, 20%, 30% or 40% decrease in cycle time in the treated lettuce plant or a lettuce plant grown from a treated seed in comparison to the untreated control lettuce plant or control lettuce plant grown from an un-treated seed. In certain embodiments, application of the composition provides for about a 5% or 10% to about a 15%, 20%, 25%, 30%, 35%, 40%, 45%, or 50% decrease in cycle time in the treated lettuce plant or a lettuce plant grown from a treated seed in comparison to an untreated control lettuce plant or control lettuce plant grown from an untreated seed. In certain embodiments, the lettuce plant part is a leaf, a stem, a flower, a root, a tuber, or a seed. In certain embodiments, the method further comprises the steps of growing the plant and/or the step of harvesting at least one plant part selected from the group consisting of a leaf, a stem, a flower, a root, a tuber, or a seed from the lettuce plant or plant part. In certain embodiments of any of the aforementioned methods, the methods further comprise obtaining a processed food or feed composition from the plant or plant part. In certain embodiments, the processed food composition comprises chopped or cut lettuce leaves. 
     Also provided are methods of making a lettuce plant or plant seed treatment composition that comprises  Methylobacterium  and is depleted of substances that promote growth of resident bacteria on a plant or seed is provided herein. Such method comprises (i) growing a mono-culture or co-culture of  Methylobacterium  in media that comprises an aqueous phase, a liquid phase and a solid phase, or an emulsion, thereby obtaining a  Methylobacterium -containing media; (ii) separating the  Methylobacterium  from at least one other portion of the  Methylobacterium -containing media; and (iii) reconstituting the  Methylobacterium  in a matrix lacking substances that promote growth of resident bacteria on a plant or seed. In certain embodiments, the separation step is effected by centrifugation, filtration, or settling of the  Methylobacterium -containing media and removal of excess liquid or emulsion therefrom. In certain embodiments, the substance that promotes growth of resident bacteria on a plant or seed is selected from the group consisting of a carbon source, a nitrogen source, a phosphorous source, and combinations thereof. In certain embodiments, the matrix is a liquid, an emulsion, or one or more solids, and comprises an agriculturally acceptable adjuvant and/or excipient. Still in certain embodiments; the  Methylobacterium  are grown in media comprising a liquid phase and a solid substance with adherent  Methylobacterium  grown thereon. The solid substance is separated from the liquid phase of the  Methylobacterium -containing media, and the solid substance with adherent  Methylobacterium  grown thereon is reconstituted in the aforementioned matrix. In certain embodiments of the methods, the  Methylobacterium  sp., is selected from the group consisting of  M. aminovorans, M. extorquens, M. fujisawaense, M. mesophilicum, M. radiotolerans, M. rhodesianum, M. nodulans, M. phyllosphaerae, M. thiocyanatum , and  M. oryzae . In certain embodiments of the methods, the  Methylobacterium  is not  M. radiotolerans  or  M. oryzae . In certain embodiments of the methods, the  Methylobacterium  is adhered to a solid substance. In certain embodiments of the methods, the  Methylobacterium  is adhered to the solid substance is combined with a liquid to form a composition that is a colloid. In certain embodiments of the methods, the colloid is a gel. In certain embodiments of the methods, the  Methylobacterium  adhered to the solid substance is provided by culturing the  Methylobacterium  in the presence of the solid substance. In certain embodiments of the methods, the composition comprises an emulsion. In certain embodiments of the methods, the  Methylobacterium  is provided by culturing the  Methylobacterium  in an emulsion. 
     Methods where  Methylobacterium  are cultured in biphasic media comprising a liquid phase and a solid substance have been found to significantly increase the resultant yield of  Methylobacterium  relative to methods where the  Methylobacterium  are cultured in liquid media alone. In certain embodiments, the methods can comprise growing the  Methylobacterium  in liquid media with a particulate solid substance that can be suspended in the liquid by agitation under conditions that provide for  Methylobacterium  growth. In certain embodiments where particulate solid substances are used, at least substantially all of the solid phase can thus be suspended in the liquid phase upon agitation. Such particulate solid substances can comprise materials that are about 1 millimeter or less in length or diameter. In certain embodiments, the degree of agitation is sufficient to provide for uniform distribution of the particulate solid substance in the liquid phase and/or optimal levels of culture aeration. However, in other embodiments provided herein, at least substantially all of the solid phase is not suspended in the liquid phase, or portions of the solid phase are suspended in the liquid phase and portions of the solid phase are not suspended in the liquid phase. Non-particulate solid substances can be used in certain biphasic media where the solid phase is not suspended in the liquid phase. Such non-particulate solid substances include, but are not limited to, materials that are greater than about 1 millimeter in length or diameter. Such particulate and non-particulate solid substances also include, but are not limited to, materials that are porous, fibrous, or otherwise configured to provide for increased surface areas for adherent growth of the  Methylobacterium . Biphasic media where portions of the solid phase are suspended in the liquid phase and portions of the solid phase are not suspended in the liquid phase can comprise a mixture of particulate and non-particulate solid substances. Such particulate and non-particulate solid substances used in any of the aforementioned biphasic media also include, but are not limited to, materials that are porous, fibrous, or otherwise configured to provide for increased surface areas for adherent growth of the  Methylobacterium . In certain embodiments, the media comprises a colloid formed by a solid and a liquid phase. A colloid comprising a solid and a liquid can be pre-formed and added to liquid media or can be formed in media containing a solid and a liquid. Colloids comprising a solid and a liquid can be formed by subjecting certain solid substances to a chemical and/or thermal change. In certain embodiments, the colloid is a gel. In certain embodiments, the liquid phase of the media is an emulsion. In certain embodiments, the emulsion comprises an aqueous liquid and a liquid that is not miscible, or only partially miscible, in the aqueous liquid. Liquids that are not miscible, or only partially miscible, in water include, but are not limited to, any of the following: (1) liquids having a miscibility in water that is equal to or less than that of pentanol, hexanol, or heptanol at 25 degrees C.; (2) liquids comprising an alcohol, an aldehyde, a ketone, a fatty acid, a phospholipid, or any combination thereof, (3) alcohols selected from the group consisting of aliphatic alcohols containing at least 5 carbons and sterols; (4) an animal oil, microbial oil, synthetic oil, plant oil, or combination thereof; and/or, (5) a plant oil is selected from the group consisting of corn, soybean, cotton, peanut, sunflower, olive, flax, coconut, palm, rapeseed, sesame seed, safflower, and combinations thereof. In certain embodiments, the immiscible or partially immiscible liquid can comprises at least about 0.02% to about 20% of the liquid phase by mass. In certain embodiments, the methods can comprise obtaining a biphasic culture media comprising the liquid, the solid, and  Methylobacterium  and incubating the culture under conditions that provide for growth of the  Methylobacterium . Biphasic culture medias comprising the liquid, the solid, and  Methylobacterium  can be obtained by a variety of methods that include, but are not limited to, any of: (a) inoculating a biphasic media comprising the liquid and the solid substance with  Methylobacterium ; (b) inoculating the solid substance with  Methylobacterium  and then introducing the solid substance comprising the  Methylobacterium  into the liquid media; (c) inoculating the solid substance with  Methylobacterium , incubating the  Methylobacterium  on the solid substance, and then introducing the solid substance comprising the  Methylobacterium  into the liquid media; or (d) any combination of (a), (b), or (c). Methods and compositions for growing  Methylobacterium  in biphasic media comprising a liquid and a solid are disclosed in co-assigned U.S. patent application Ser. No. 13/907,161, filed May 31, 2013, which is incorporated herein by reference in its entirety, and in co-assigned International Patent Application PCT/US13/43722, filed May 31, 2013, which is incorporated herein by reference in its entirety. 
     Methods where  Methylobacterium  are cultured in media comprising an emulsion have also been found to significantly increase the resultant yield of  Methylobacterium  relative to methods where the  Methylobacterium  are cultured in liquid media alone. In certain embodiments, the methods for making the compositions provided herein can comprise growing the  Methylobacterium  agent in an emulsion under conditions that provide for  Methylobacterium  growth. Medias comprising the emulsion and  Methylobacterium  can be obtained by a variety of methods that include, but are not limited to, any of: (a) inoculating a media comprising the emulsion with  Methylobacterium ; (b) inoculating the aqueous liquid with the  Methylobacterium , introducing the non-aqueous liquid, and mixing to form an emulsion; (c) inoculating the aqueous liquid with the  Methylobacterium , introducing the non-aqueous liquid, and mixing to form an emulsion; or (d) any combination of (a), (b), or (c). In certain embodiments, the emulsion comprises an aqueous liquid and a liquid that is not miscible, or only partially miscible, in the aqueous liquid. Non-aqueous liquids that are not miscible, or only partially miscible, in water include, but are not limited to, any of the following: (1) liquids having a miscibility in water that is equal to or less than that of n-pentanol, n-hexanol, or n-heptanol at 25 degrees C.; (2) liquids comprising an alcohol, an aldehyde, a ketone, a fatty acid, a phospholipid, or any combination thereof (3) alcohols is selected from the group consisting of aliphatic alcohols containing at least 5, 6, or 7 carbons and sterols; (4) an animal oil, microbial oil, synthetic oil, plant oil, or combination thereof; and/or, (5) a plant oil is selected from the group consisting of corn, soybean, cotton, peanut, sunflower, olive, flax, coconut, palm, rapeseed, sesame seed, safflower, and combinations thereof. In certain embodiments, the immiscible or partially immiscible non-aqueous liquid can comprise at least about 0.02% to about 20% of the emulsion by mass. In certain embodiments, the immiscible or partially immiscible non-aqueous liquid can comprise at least about any of about 0.05%, 0.1%, 0.5%, or 1% to about 3%, 5%, 10%, or 20% of the emulsion by mass. Methods and compositions for growing  Methylobacterium  in media comprising an emulsion are disclosed in co-assigned International Patent Application PCT/US2014/040218, filed May 30, 2014, which is incorporated herein by reference in its entirety. 
     In certain embodiments, the fermentation broth, fermentation broth product, or compositions that comprise  Methylobacterium  sp. can further comprise one or more introduced microorganisms of pre-determined identity other than  Methylobacterium . Other microorganisms that can be added include, but are not limited to, microorganisms that are biopesticidal or provide some other benefit when applied to a plant or plant part. Biopesticidal or otherwise beneficial microorganisms thus include, but are not limited to, various  Bacillus  sp.,  Pseudomonas  sp.,  Coniothyrium  sp.,  Pantoea  sp.,  Streptomyces  sp., and  Trichoderma  sp. Microbial biopesticides can be a bacterium, fungus, virus, or protozoan. Particularly useful biopesticidal microorganisms include various  Bacillus subtilis, Bacillus thuringiensis, Bacillus pumilis, Pseudomonas syringae, Trichoderma harzianum, Trichoderma vixens , and  Streptomyces lydicus  strains. Other microorganisms that are added can be genetically engineered or naturally occurring isolates that are available as pure cultures. In certain embodiments, it is anticipated that the bacterial or fungal microorganism can be provided in the fermentation broth, fermentation broth product, or composition in the form of a spore. 
     In certain embodiments, the liquid culture medium is prepared from inexpensive and readily available components, including, but not limited to, inorganic salts such as potassium phosphate, magnesium sulfate and the like, carbon sources such as glycerol, methanol, glutamic acid, aspartic acid, succinic acid and the like, and amino acid blends such as peptone, tryptone, and the like. Exemplary liquid media that can be used include, but are not limited to, ammonium mineral salts (AMS) medium (Whittenbury et al., 1970), Vogel-Bonner (VB) minimal culture medium (Vogel and Bonner, 1956), and LB broth (“Luria-Bertani Broth”). 
     In general, the solid substance used in the methods and compositions that provide for the efficient growth of  Methylobacterium  can be any suitable solid substance which is insoluble or only partially soluble in water or aqueous solutions. Such suitable solid substances are also non-bacteriocidal or non-bacteriostatic with respect to  Methylobacterium  when the solid substances are provided in the liquid culture media. In certain embodiments, such suitable solid substances are also solid substances that are readily obtained in sterile form or rendered sterile. Solid substances used herein can be sterilized by any method that provides for removal of contaminating microorganisms and thus include, but are not limited to, methods such as autoclaving, irradiation, chemical treatment, and any combination thereof. These solid substances include natural substances of animal, plant, microbial, fungal, or mineral origin, manmade substances, or combinations of natural and manmade substances. In certain embodiments, the solid substances are inanimate solid substances. Inanimate solid substances of animal, plant, microbial, or fungal origin can be obtained from animals, plants, microbes, or fungi that are unviable (i.e. no longer living) or that have been rendered unviable. Diatom shells are thus inanimate solid substances when previously associated diatom algae have been removed or otherwise rendered inviable. Since diatom shells are inanimate solid substances, they are not considered to be photosynthetic organisms or photosynthetic microorganisms. In certain embodiments, solid substances include, but are not limited to, sand, silt, soil, clay, ash, charcoal, diatomaceous earth and other similar minerals, ground glass or glass beads, ground ceramic materials, ceramic beads, bentonite, kaolin, talc, perlite, mica, vermiculite, silicas, quartz powder, montmorillonite, and combinations thereof. In certain embodiments, the solid substance can be a polymer or polymeric beads. Polymers that can be used as a solid substance include, but are not limited to, various polysaccharides such as cellulosic polymers and chitinous polymers which are insoluble or only partially soluble in water or aqueous solutions, agar (i.e. galactans), and combinations thereof. In certain embodiments, the solid substance can be an insoluble or only partially soluble salt crystal. Salt crystals that can be used include, but are not limited to, insoluble or only partially soluble carbonates, chromates, sulfites, phosphates, hydroxides, oxides, and sulfides. In certain embodiments, the solid substance can be a microbial cell, fungal cell, microbial spore, or fungal spore. In certain embodiments, the solid substance can be a microbial cell or microbial spore wherein the microbial cell or microbial spore is not a photosynthetic microorganism. In certain embodiments, the microbial cell or microbial spore is not a photosynthetic microorganism, where the photosynthetic microorganism is selected from the group consisting of algae, cyanobacteria, diatoms,  Botryococcus braunii, Chlorella, Dunaliella tertiolecta, Gracilaria, Pleurochrysis carterae, Sargassum , and  Ulva . In still other embodiments, the solid substance can be an inactivated (i.e., unviable) microbial cell, fungal cell, microbial spore, or fungal spore. In still other embodiments, the solid substance can be a quiescent (i.e. viable but not actively dividing) microbial cell, fungal cell, microbial spore, or fungal spore. In still other embodiments, the solid substance can be cellular debris of microbial origin. In still other embodiments, the solid substance can be particulate matter from any part of a plant. Plant parts that can be used to obtain the solid substance include, but are not limited to, cobs, husks, hulls, leaves, roots, flowers, stems, barks, seeds, and combinations thereof. Products obtained from processed plant parts including, but not limited to, bagasse, wheat bran, soy grits, crushed seed cake, stover, and the like can also be used. Such plant parts, processed plants, and/or processed plant parts can be milled to obtain the solid material in a particulate form that can be used. In certain embodiments, wood or a wood product including, but not limited to, wood pulp, sawdust, shavings, and the like can be used. In certain embodiments, the solid substance can be a particulate matter from an animal(s), including, but not limited to, bone meal, gelatin, ground or powdered shells, hair, macerated hide, and the like. 
     In certain embodiments, the solid substance is provided in a particulate form that provides for distribution of the solid substance in the culture media. In certain embodiments, the solid substance is comprised of particle of about 2 microns to about 1000 microns in average length or average diameter. In certain embodiments, the solid substance is comprised of particle of about 1 microns to about 1000 microns in average length or average diameter. In certain embodiments, the solid substance is a particle of about 1, 2, 4, 10, 20, or 40 microns to any of about 100, 200, 500, 750, or 1000 microns in average length or average diameter. Desirable characteristics of particles used in the methods and compositions provided herein include suitable wettability such that the particles can be suspended throughout the media upon agitation. 
     In certain embodiments, the solid substance is provided in the media as a colloid wherein the continuous phase is a liquid and the dispersed phase is the solid. Suitable solids that can be used to form colloids in liquid media used to grow  Methylobacterium  include, but are not limited to, various solids that are referred to as hydrocolloids. Such hydrocolloids used in the media, methods and compositions provided herein can be hydrophilic polymers, of plant, animal, microbial, or synthetic origin. Hydrocolloid polymers used in the methods can contain many hydroxyl groups and/or can be polyelectrolytes. Hydrocolloid polymers used in the compositions and methods provided herein include, but are not limited to, agar, alginate, arabinoxylan, carrageenan, carboxymethylcellulose, cellulose, curdlan, gelatin, gellan, β-glucan, guar gum, gum arabic, locust bean gum, pectin, starch, xanthan gum, and mixtures thereof. In certain embodiments, the colloid used in the media, methods, and compositions provided herein can comprise a hydrocolloid polymer and one or more proteins. 
     In certain embodiments, the solid substance can be a solid substance that provides for adherent growth of  Methylobacterium  on the solid substance.  Methylobacterium  that are adhered to a solid substance are  Methylobacterium  that cannot be substantially removed by simply washing the solid substance with the adherent  Methylobacterium  with growth media whereas non-adherent  Methylobacterium  can be substantially removed by washing the solid substance with liquid growth media. In this context, “substantially removed” means that at least about 30%, 40%, 50%, 60%, 70%, or 80% the  Methylobacterium  present are removed when the solid substance is washed with three volumes of liquid growth media. Such washing can be effected by a variety of methods including, but not limited to, decanting liquid from a washed solid phase or passing liquid through a solid phase on a filter that permits flow through of bacteria in the liquid. In certain embodiments, the adherent  Methylobacterium  that are associated with the solid can include both  Methylobacterium  that are directly attached to the solid and/or  Methylobacterium  that are indirectly attached to the solid substance.  Methylobacterium  that are indirectly attached to the solid substance include, but are not limited to,  Methylobacterium  that are attached to another  Methylobacterium  or to another microorganism that is attached to the solid substance,  Methylobacterium  that are attached to the solid substance by being attached to another substance that is attached to the solid substance, and the like. In certain embodiments, at least 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90%, 95%, 98%, 99%, 99.5% or 99.9% of the  Methylobacterium  in the fermentation broth, fermentation broth product, or compositions are  Methylobacterium  that are adhered to the solid substance. In certain embodiments, adherent  Methylobacterium  can be present on the surface of the solid substance in the fermentation broth, fermentation broth product, or composition at a density of at least about 1  Methylobacterium/ 20 square micrometers, of at least about 1  Methylobacterium/ 10 square micrometers, of at least about 1  Methylobacterium/ 10 square micrometers, of at least about 1  Methylobacterium/ 5 square micrometers, of at least about 1  Methylobacterium/ 2 square micrometers, or of at least about 1  Methylobacterium /square micrometer. In certain embodiments, adherent  Methylobacterium  can be present on the surface of the solid substance in the fermentation broth, fermentation broth product, or composition at a density of at least about 1  Methylobacterium/ 20 square micrometers to about 1  Methylobacterium /square micrometer, of at least about 1  Methylobacterium/ 10 square micrometers to about 1  Methylobacterium /square micrometer, of at least about 1  Methylobacterium/ 10 square micrometers to about 1  Methylobacterium /square micrometer, of at least about 1  Methylobacterium/ 5 square micrometers to about 1  Methylobacterium /square micrometer, or of at least about 1  Methylobacterium/ 2 square micrometers to about 1  Methylobacterium /square micrometer. In certain embodiments, adherent  Methylobacterium  can be present on the surface of the solid substance in the fermentation broth, fermentation broth product, or composition at a density of at least about 1  Methylobacterium/ 20 square micrometers to about 1  Methylobacterium/ 2 square micrometers, of at least about 1  Methylobacterium/ 10 square micrometers to about 1  Methylobacterium/ 2 square micrometers, of at least about 1  Methylobacterium/ 10 square micrometers to about 1  Methylobacterium/ 2 square micrometers, or of at least about 1  Methylobacterium/ 5 square micrometers to about 1  Methylobacterium/ 2 square micrometers. Biphasic fermentation broths provided herein can comprise a liquid phase that contains non-adherent  Methylobacterium . In certain embodiments, titers of non-adherent  Methylobacterium  in the liquid phase can be less than about 100,000, 10,000, or 1,000 CFU/ml. 
     Biphasic culture methods provided can yield fermentation broths with  Methylobacterium  at a titer of greater than about 5×10 8  colony-forming units per milliliter, at a titer of greater than about 1×10 9  colony-forming units per milliliter, at a titer of greater than about 1×10 10  colony-forming units per milliliter, at a titer of at least about 3×10 10  colony-forming units per milliliter. In certain embodiments, fermentation broths provided herein can comprise  Methylobacterium  at a titer of at least about 5×10 8  colony-forming units per milliliter to at least about 3×10 10  colony-forming units per milliliter, at least about 5×10 8  colony-forming units per milliliter to at least about 4×10 10  colony-forming units per milliliter, or at least about 5×10 8  colony-forming units per milliliter to at least about 6×10 10  colony-forming units per milliliter. In certain embodiments, fermentation broths provided herein can comprise  Methylobacterium  at a titer of at least about 1×10 9  colony-forming units per milliliter to at least about 3×10 10  colony-forming units per milliliter, at least about 1×10 9  colony-forming units per milliliter to at least about 4×10 10  colony-forming units per milliliter, or at least about 1×10 9  colony-forming units per milliliter to at least about 6×10 10  colony-forming units per milliliter. In certain embodiments, fermentation broths provided herein will comprise  Methylobacterium  at a titer of at least about 1×10 10  colony-forming units per milliliter to at least about 3×10 10  colony-forming units per milliliter, at least about 1×10 10  colony-forming units per milliliter to at least about 4×10 10  colony-forming units per milliliter, or at least about 1×10 10  colony-forming units per milliliter to at least about 6×10 10  colony-forming units per milliliter. In certain embodiments, fermentation broths provided herein will comprise  Methylobacterium  at a titer of, at least about 3×10 10  colony-forming units per milliliter to at least about 4×10 10  colony-forming units per milliliter, or at least about 3×10 10  colony-forming units per milliliter to at least about 6×10 10  colony-forming units per milliliter. 
     Solid substances with adherent  Methylobacterium  can be obtained as fermentation products can be used to make various compositions useful for treating plants or plant parts to improve plant yield, plant insect resistance, plant fungal disease resistance, and/or to improve lettuce production. In certain embodiments, the composition comprises  Methylobacterium  and is depleted of substances that promote growth of resident bacteria. Compositions provided herein comprising  Methylobacterium , solid substances with  Methylobacterium  grown thereon, or comprising emulsions with  Methylobacterium  grown therein can be used to treat plants or plant parts. Plants, plant parts, and, in particular, plant seeds that have been at least partially coated or coated with the fermentation broth products or compositions comprising  Methylobacterium  are thus provided. Also provided are processed plant products that contain the fermentation broth products or compositions with  Methylobacterium  or adherent  Methylobacterium . Solid substances with adherent  Methylobacterium  can be used to make various compositions that are particularly useful for treating plant seeds. Seeds that have been at least partially coated with the fermentation broth products or compositions are thus provided. Also provided are processed seed products, including, but not limited to, meal, flour, feed, and flakes that contain the fermentation broth products or compositions provided herein. In certain embodiments, the processed plant product will be non-regenerable (i.e. will be incapable of developing into a plant). In certain embodiments, the solid substance used in the fermentation product or composition that at least partially coats the plant, plant part, or plant seed or that is contained in the processed plant, plant part, or seed product comprises a solid substance and associated or adherent  Methylobacterium  that can be readily identified by comparing a treated and an untreated plant, plant part, plant seed, or processed product thereof. Partial coating of a plant, a plant part, or a seed includes, but is not limited to coating at least about 5%, 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90%, 95%, 98%, 99%, or about 99.5% of the surface area of the plant, plant part, or plant seed. 
     Methods of preparing a plant or plant seed treatment composition that comprises  Methylobacterium  and is depleted of substances that promote growth of resident bacteria on a plant or seed are also provided herein. Such methods can comprise (i) growing a mono-culture or co-culture of  Methylobacterium  in media that comprises: (a) an aqueous phase; (b) a liquid phase and a solid phase; or (c) an emulsion, thereby obtaining a  Methylobacterium -containing media; (ii) separating the  Methylobacterium  from at least one other portion of the  Methylobacterium -containing media; and (iii) reconstituting the  Methylobacterium  in a matrix lacking substances that promote growth of resident bacteria on a plant or seed. In certain embodiments, the separation step is effected by centrifugation, filtration, or settling of the  Methylobacterium -containing media and removal of excess liquid or emulsion therefrom. In certain embodiments where the  Methylobacterium  are grown in the presence of a solid substance, the separation will provide a fraction containing  Methylobacterium  with adherent growth to the solid substance and some non-adherent  Methylobacterium  that can be reconstituted in the matrix. In certain embodiments, the substance that promotes growth of resident bacteria on a plant or seed is selected from the group consisting of a carbon source, a nitrogen source, a phosphorous source, a sulfur source, a magnesium source, and combinations thereof. In certain embodiments, the matrix is a liquid, an emulsion, or one or more solids, and comprises an agriculturally acceptable adjuvant and/or excipient. In certain embodiments; the  Methylobacterium  are grown in media comprising a liquid phase and a solid substance with adherent  Methylobacterium  grown thereon. The solid substance is separated from the liquid phase of the  Methylobacterium -containing media, and the solid substance with adherent  Methylobacterium  grown thereon is reconstituted in the aforementioned matrix. In certain embodiments, the matrix can be a liquid including, but not limited to, water, and aqueous buffer depleted of substances that promote growth of resident bacteria on a plant or seed, or an aqueous solution depleted of substances that promote growth of resident bacteria on a plant or seed. 
     In certain embodiments, the  Methylobacterium  sp. that improve lettuce production can be identified by testing newly isolated candidate  Methylobacterium  sp. for the presence of polymorphic nucleic acid sequences that are present in exemplary  Methylobacterium  sp. provided herein that improve lettuce production and that are absent from  Methylobacterium  sp. provided herein that do not improve lettuce production. In certain embodiments, the polymorphic nucleic acid sequences that are present in the identified  Methylobacterium  sp. that improve lettuce production are also present in one or more of the exemplary  Methylobacterium  sp. isolates NLS0020, NLS0066, NLS0017, NLS0065, NLS0089, NLS0042, and NLS0068 provided herein that improve lettuce production but are absent from one or more of the  Methylobacterium  sp. isolates provided herein that do not improve lettuce production. In certain embodiments, the polymorphic nucleic acid sequences that are present in the identified  Methylobacterium  sp. that improve lettuce production are also present in one or more of the exemplary  Methylobacterium  sp. isolates NLS0020, NLS0066, NLS0017, NLS0065 and/or NLS0089 provided herein that improve lettuce production when applied as seed treatments but are absent from one or more of the  Methylobacterium  sp. isolates provided herein that do not improve lettuce production when applied as seed treatments. In certain embodiments, the polymorphic nucleic acid sequences that are present in the identified  Methylobacterium  sp. that improve lettuce production are also present in one or more of the exemplary  Methylobacterium  sp. isolates NLS0020, NLS0017, NLS0042, and NLS0068 provided herein that improve lettuce production when applied as foliar treatments but are absent from one or more of the  Methylobacterium  sp. isolates provided herein that do not improve lettuce production when applied as foliar treatments. In certain embodiments, the polymorphic nucleic acid sequences that are present in the identified  Methylobacterium  sp. that improve lettuce production are also present in two or more of the exemplary  Methylobacterium  sp. isolates NLS0020, NLS0066, NLS0017, NLS0065, NLS0089, NLS0042, and NLS0068 provided herein that improve lettuce production but are absent in two or more of the  Methylobacterium  sp. isolates provided herein that do not improve lettuce production. In certain embodiments, the polymorphic nucleic acid sequences that are present in the identified  Methylobacterium  sp. that improve lettuce production are also present in one or more of the exemplary  Methylobacterium  sp. isolates NLS0020, NLS0066, NLS0017, NLS0065, NLS0089, NLS0042, and/or NLS0068 provided herein that improve lettuce production but are absent from all of the  Methylobacterium  sp. isolates provided herein that do not improve lettuce production. In certain embodiments, the polymorphic nucleic acid sequences present in the identified  Methylobacterium  sp. that improve lettuce production are present in all of the exemplary  Methylobacterium  sp. isolates NLS0020, NLS0066, NLS0017, NLS0065, NLS0089, NLS0042, and NLS0068 provided herein that improve lettuce production but are absent in all of the  Methylobacterium  sp. isolates provided herein that do not improve lettuce production. Such nucleic acid polymorphisms that occur in the  Methylobacterium  sp. that improve lettuce production can include, but are not limited to, single nucleotide polymorphisms, RFLP, AFLP and/or other DNA variations such as repetitive sequences, insertion sequences, transposons, and genomic islands occurring as a result of insertions, deletions, and substitutions (Indels) in the bacterial genome which includes both the chromosomal DNA as well as any extrachromosomal nucleic acid elements that may be present in the  Methylobacterium  sp. that improve lettuce production. Such extrachromosomal nucleic acid elements include, but are not limited to, plasmids, bacteriophage DNA or RNA, and the like. Methods used to identify such nucleotide polymorphisms include, but are not limited to, single base extension (SBE) techniques, allele specific hybridization (ASH), real-time PCR detection (i.e. TaqMan™; U.S. Pat. Nos. 5,804,375; 5,538,848; 5,487,972; and 5,210,015, which are each incorporated herein by reference in their entireties), combinations of ASH and RT-PCR (KASP™ detection systems, LGC Genomics, Middlesex, UK) and deep sequencing techniques (U.S. Patent Appl. No. 20120264632, incorporated herein by reference in its entirety). 
     Also provided herein are compositions, methods of making the compositions, and methods of using the compositions to improve lettuce production where the compositions or methods comprise or use any of the following  Methylobacterium  sp. isolates provided in the following Table 1 or derivatives of the isolates. In certain embodiments, such derivatives can include variants but are not limited to, variants of the isolates obtained by selection, variants of the isolates selected by mutagenesis and selection, and genetically transformed isolates obtained from the isolates. 
     
       
         
           
               
             
               
                 TABLE 1 
               
             
            
               
                   
               
               
                   Methylobacterium  sp. isolates 
               
            
           
           
               
               
               
            
               
                   
                   
                 USDA ARS 
               
               
                   
                 NLS 
                 NRRL No. 1   
               
               
                   
                   
               
               
                   
                 NLS0017 
                 NRRL B-50931 
               
               
                   
                 NLS0020 
                 NRRL B-50930 
               
               
                   
                 NLS0021 
                 NRRL B-50939 
               
               
                   
                 NLS0037 
                 NRRL B-50941 
               
               
                   
                 NLS0038 
                 NRRL B-50942 
               
               
                   
                 NLS0042 
                 NRRL B-50932 
               
               
                   
                 NLS0046 
                 NRRL B-50929 
               
               
                   
                 NLS0062 
                 NRRL B-50937 
               
               
                   
                 NLS0064 
                 NRRL B-50938 
               
               
                   
                 NLS0065 
                 NRRL B-50935 
               
               
                   
                 NLS0066 
                 NRRL B-50940 
               
               
                   
                 NLS0068 
                 NRRL B-50934 
               
               
                   
                 NLS0069 
                 NRRL B-50936 
               
               
                   
                 NLS0089 
                 NRRL B-50933 
               
               
                   
                   
               
               
                   
                   1 Deposit number for strain to be deposited with the AGRICULTURAL RESEARCH SERVICE CULTURE COLLECTION (NRRL) of the National Center for Agricultural Utilization Research, Agricultural Research Service, U.S. Department of Agriculture, 1815 North University Street, Peoria, Illinois 61604 U.S.A. under the terms of the Budapest Treaty on the International Recognition of the Deposit of Microorganisms for the Purposes of Patent Procedure. Subject to 37 CFR §1.808(b), all restrictions imposed by the depositor on the availability to the public of the deposited material will be irrevocably removed upon the granting of any patent from this patent application. 
               
            
           
         
       
     
     Co-assigned patent applications that disclose additional specific uses of the  Methylobacterium  strains of Table 1 such as: (1) increasing corn yield (U.S. 61/911,780, filed Dec. 4, 2013; and International Application claiming benefit of the same filed on Dec. 4, 2014); (2) increasing soybean yield (U.S. 61/911,698, filed Dec. 4, 2013; and International Application claiming benefit of the same filed on Dec. 4, 2014); (3) improving tomato growth (U.S. 61/954,390, filed Mar. 17, 2014; and International Application claiming benefit of the same filed on Dec. 4, 2014); (4) improving fruit maturation (U.S. 61/911,577, filed Dec. 4, 2013; and International Application claiming benefit of the same filed on Dec. 4, 2014); (5) providing fungal disease resistance (U.S. 62/045,950, filed Sep. 4, 2014; U.S. 62/013,464, filed Jun. 17, 2014) and are each incorporated herein by reference in their entireties. Specifically incorporated herein by reference in their entireties are the amino acid and genomic nucleic acid sequences of NLS017 and NLS066 disclosed in the International Application for Compositions And Methods For Improved Tomato Growth, filed Dec. 4, 2014 and claiming benefit of U.S. 61/954,390, filed Mar. 17, 2014. 
     Also provided herein are  Methylobacterium  sp. that provide for improved lettuce production where the  Methylobacterium  sp. have any of: (i) at least one gene encoding at least one protein that is orthologous to a protein having an amino acid sequence of SEQ ID NO: 1-5125; or (ii) at least one gene encoding at least one protein that is orthologous to a reference protein of Table 7. A  Methylobacterium  sp. has at least one gene that is orthologous to a protein having an amino acid sequence of at least one of SEQ ID NO: 1-5125, or to the corresponding SEQ ID NO of a reference protein of Table 7, when a chromosome and/or any extrachromosomal DNA in that  Methylobacterium  sp. contains a gene encoding a protein that has at least 50%, at least 60%, at least 70%, at least 80%, at least 90%, at least 95%, at least 97%, at least 98%, at least 99%, or 100% sequence identity across the entire length of the amino acid sequence of at least one of SEQ ID NO: 1-5125. The  Methylobacterium  sp. can also have at least two, three, four, six, eight, 10, 15, or 20 genes encoding proteins that are orthologous to proteins having an amino acid sequence of SEQ ID NO: 1-5125 or encoding proteins that are orthologous to the corresponding SEQ ID NO of a reference protein of Table 7. In certain embodiments, the  Methylobacterium  sp. can contain at least one gene encoding a protein that is orthologous to a reference protein having the amino acid sequence of 13, 14, 23, 27, 28, 30, 40, 43, 44, 51, 52, 57, 76, 85, 127, 197, 198, 199, 1094, 1100, 1106, 1114, 1116, 1117, 1120, 1180, 2180, 2190, 2463, 2467, 2468, 2471, 2510, 2515, 2676, 2971, 3357, 3370, 3372, 3394, 3427, 3429, 3430, 3950, 3952, 3968, 3987, 3996, 4004, 4006, and/or 4067 of Table 7. In certain embodiments, the  Methylobacterium  sp. can contain at least one gene encoding a protein that is orthologous to reference protein having the amino acid sequence of SEQ ID NO: 13, 14, 23, 1094, 1100, 1106, 2467, 2468, 3357, 3370, and/or 3968 of Table 7. In certain embodiments, the  Methylobacterium  sp. can contain at least one gene encoding a protein that is orthologous to reference protein having the amino acid sequence of SEQ ID NO: 1100, 1116, 2471, 2971, and/or 3950 of Table 7. Examples of proteins that are orthologous to SEQ ID NO: 1094 include, but are not limited to, the orthologous proteins identified as transcriptional regulators that are provided in Table 7. Examples of proteins that are orthologous to SEQ ID NO: 23 include, but are not limited to, the orthologous proteins identified as transcriptional regulator XRE family proteins that are provided in Table 7. Examples of proteins that are orthologous to SEQ ID NO: 1100 include, but are not limited to, proteins having the amino acid sequence of SEQ ID NO: 17, 1110, 2179, 2484, and 3367 that are similar to proteins identified as ABC transporter-like proteins. Examples of proteins that are orthologous to SEQ ID NO: 1116 include, but are not limited to, proteins having the amino acid sequence of SEQ ID NO: 37, 1116, 2182, and 2521 that are similar to proteins identified as multidrug transporter MatE. Examples of proteins that are orthologous to SEQ ID NO: 2471 include, but are not limited to, proteins having the amino acid sequence of SEQ ID NO: 10, 2471, 3356, and 3958 that are similar to proteins identified as arsenite efflux pump ACR proteins. Examples of proteins that are orthologous to SEQ ID NO: 2971 include, but are not limited to, proteins having the amino acid sequence of SEQ ID NO: 250, 1309, 2263, and 2971 that are similar to proteins identified as members of the LysR family transcriptional regulators. In certain embodiments, the  Methylobacterium  sp. has at least one gene that is orthologous to a protein having an amino acid sequence of at least one of SEQ ID NO: 1-5125, or to the corresponding SEQ ID NO of a reference protein of Table 7, with the proviso that the gene is not found in  M. extorquens  AM1,  M. extorquens  PA1, or  M. extorquens  ME4. Compositions comprising any of the aforementioned  Methylobacterium  sp. and an agriculturally acceptable excipient, adjuvant, or combination thereof are also provided along with lettuce seeds or leaves that are at least partially coated with such compositions and methods of using such compositions as seed or foliar treatments to improve lettuce production. 
     A  Methylobacterium  sp. can be determined to contain a gene encoding a protein that is orthologous to a protein having an amino acid sequence of SEQ ID NO: 1-5125 by a variety of different techniques. In certain embodiments, a  Methylobacterium  sp. can be determined to contain a gene encoding a protein that is orthologous to a protein having an amino acid sequence of SEQ ID NO: 1-5125 by assembling a complete electronic genomic sequence comprising chromosomal and extrachromosomal DNA sequences present in that  Methylobacterium  sp. with a computer and associated software, and determining if any of the open reading frames (ORF) present in that DNA sequence encode a protein having the aforementioned percent sequence identity. In such embodiments, the ORF can be identified by performing a six-way translation of the electronically assembled sequence and querying the translated with an amino acid sequence of SEQ ID NO: 1-5125 or the corresponding SEQ ID NO: of a reference protein of Table 7. In other embodiments, the present or absence of a given sequence within a  Methylobacterium  sp. an amino acid sequence of SEQ ID NO: 1-5125 or the corresponding SEQ ID NO: of a reference protein of Table 7 can be determined by a nucleic acid analysis or protein analysis technique. Examples of nucleic acid sequences that encode the proteins of SEQ ID NO:1-5125 include, but are not limited to, SEQ ID NO: 5126-10250, respectively. Such nucleic acid analyses include, but are not limited to, techniques based on nucleic acid hybridization, polymerase chain reactions, mass spectroscopy, nanopore based detection, combinations thereof, and the like. Protein analysis techniques include, but are not limited to, immuno-detection, mass spectroscopy, combinations thereof, and the like. 
     Compositions provided herein that are useful for treating lettuce plants or plant parts that comprise  Methylobacterium , and/or are depleted of substances that promote growth of resident bacteria on a plant or seed, contain a solid substance with adherent  Methylobacterium  grown thereon, or that comprise emulsions with  Methylobacterium  grown therein can also further comprise an agriculturally acceptable adjuvant or an agriculturally acceptable excipient. An agriculturally acceptable adjuvant or an agriculturally acceptable excipient is typically an ingredient that does not cause undue phytotoxicity or other adverse effects when exposed to a plant or plant part. In certain embodiments, the solid substance can itself be an agriculturally acceptable adjuvant or an agriculturally acceptable excipient so long as it is not bacteriocidal or bacteriostatic to the  Methylobacterium . In other embodiments, the composition further comprises at least one of an agriculturally acceptable adjuvant or an agriculturally acceptable excipient. Any of the aforementioned compositions can also further comprise a pesticide. Pesticides used in the composition include, but are not limited to, an insecticide, a fungicide, a nematocide, and a bacteriocide. In certain embodiments, the pesticide used in the composition is a pesticide that does not substantially inhibit growth of the  Methylobacterium . As  Methylobacterium  are gram negative bacteria, suitable bacteriocides used in the compositions can include, but are not limited to, bacteriocides that exhibit activity against gram positive bacteria but not gram negative bacteria. Compositions provided herein can also comprise a bacteriostatic agent that does not substantially inhibit growth of the  Methylobacterium . Bacteriostatic agents suitable for use in compositions provided herein include, but are not limited to, those that exhibit activity against gram positive bacteria but not gram negative bacteria. Any of the aforementioned compositions can also be an essentially dry product (i.e. having about 5% or less water content), a mixture of the composition with an emulsion, or a suspension. Any of the compositions provided herein can be used to coat or partially coat a plant, plant, part, or plant seed. Partial coating of a plant, a plant part, or a seed includes, but is not limited to coating at least about 5%, 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90%, 95%, 98%, 99%, or about 99.5% of the surface area of the plant, plant part, or plant seed. 
     Agriculturally acceptable adjuvants used in the compositions that comprise  Methylobacterium  include, but are not limited to, components that enhance product efficacy and/or products that enhance ease of product application. Adjuvants that enhance product efficacy can include various wetters/spreaders that promote adhesion to and spreading of the composition on plant parts, stickers that promote adhesion to the plant part, penetrants that can promote contact of the active agent with interior tissues, extenders that increase the half-life of the active agent by inhibiting environmental degradation, and humectants that increase the density or drying time of sprayed compositions. Wetters/spreaders used in the compositions can include, but are not limited to, non-ionic surfactants, anionic surfactants, cationic surfactants, amphoteric surfactants, organo-silicate surfactants, and/or acidified surfactants. Stickers used in the compositions can include, but are not limited to, latex-based substances, terpene/pinolene, and pyrrolidone-based substances. Penetrants can include mineral oil, vegetable oil, esterified vegetable oil, organo-silicate surfactants, and acidified surfactants. Extenders used in the compositions can include, but are not limited to, ammonium sulphate, or menthene-based substances. Humectants used in the compositions can include, but are not limited to, glycerol, propylene glycol, and diethyl glycol. Adjuvants that improve ease of product application include, but are not limited to, acidifying/buffering agents, anti-foaming/de-foaming agents, compatibility agents, drift-reducing agents, dyes, and water conditioners. Anti-foaming/de-foaming agents used in the compositions can include, but are not limited to, dimethopolysiloxane. Compatibility agents used in the compositions can include, but are not limited to, ammonium sulphate. Drift-reducing agents used in the compositions can include, but are not limited to, polyacrylamides, and polysaccharides. Water conditioners used in the compositions can include, but are not limited to, ammonium sulphate. 
     Methods of treating plants and/or plant parts with the fermentation broths, fermentation broth products, and compositions comprising  Methylobacterium  are also provided herein. Treated plants, and treated plant parts obtained therefrom, include, but are not limited to, a pepper, tomato, berry, or banana plant. Plant parts that are treated include, but are not limited to, leaves, stems, flowers, roots, seeds, fruit, tubers, coleoptiles, and the like. Seeds or other propagules of any of the aforementioned plants can be treated with the fermentation broths, fermentation broth products, fermentation products, and/or compositions provided herein. 
     In certain embodiments, plants and/or plant parts are treated by applying the fermentation broths, fermentation broth products, fermentation products, and compositions that comprise  Methylobacterium  as a spray. Such spray applications include, but are not limited to, treatments of a single plant part or any combination of plant parts. Spraying can be achieved with any device that will distribute the fermentation broths, fermentation broth products, fermentation products, and compositions to the plant and/or plant part(s). Useful spray devices include a boom sprayer, a hand or backpack sprayer, crop dusters (i.e. aerial spraying), and the like. Spraying devices and or methods providing for application of the fermentation broths, fermentation broth products, fermentation products, and compositions to either one or both of the adaxial surface and/or abaxial surface can also be used. Plants and/or plant parts that are at least partially coated with any of a biphasic fermentation broth, a fermentation broth product, fermentation product, or compositions that comprise a solid substance with  Methylobacterium  adhered thereto are also provided herein. Also provided herein are processed plant products that comprise a solid substance with  Methylobacterium  adhered thereto. Any of the compositions provided herein can be used to coat or partially coat a plant, plant, part, or plant seed. Partial coating of a plant, a plant part, or a seed includes, but is not limited to coating at least about 5%, 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90%, 95%, 98%, 99%, or about 99.5% of the surface area of the plant, plant part, or plant seed 
     In certain embodiments, lettuce seeds are treated by exposing the seeds to the fermentation broths, fermentation broth products, fermentation products, and compositions that comprise  Methylobacterium . Seeds can be treated with the fermentation broths, fermentation broth products, and compositions provided herein by methods including, but not limited to, imbibition, coating, spraying, and the like. In certain embodiments, surface sterilized seeds are treated with a composition comprising  Methylobacterium . In certain embodiments, non-sterilized seeds (i.e. seeds that have not been subjected to surface sterilization) are treated with a composition comprising  Methylobacterium  that has been depleted of substances that promote growth of resident microorganisms on the seed. Seed treatments can be effected with both continuous and/or a batch seed treaters. In certain embodiments, the coated seeds may be prepared by slurrying seeds with a coating composition containing a fermentation broth, fermentation broth product, or compositions that comprise the solid substance with  Methylobacterium  and air drying the resulting product. Air drying can be accomplished at any temperature that is not deleterious to the seed or the  Methylobacterium , but will typically not be greater than 30 degrees Centigrade. The proportion of coating that comprises a solid substance and  Methylobacterium  includes, but is not limited to, a range of 0.1 to 25% by weight of the seed, 0.5 to 5% by weight of the seed, and 0.5 to 2.5% by weight of seed. Partial coating of a seed can includes, but is not limited to coating at least about 5%, 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90%, 95%, 98%, 99%, or about 99.5% of the surface area of the seed. In certain embodiments, a solid substance used in the seed coating or treatment will have  Methylobacterium  adhered thereon. In certain embodiments, a solid substance used in the seed coating or treatment will be associated with  Methylobacterium  and will be a fermentation broth, fermentation broth product, or composition obtained by the methods provided herein. Various seed treatment compositions and methods for seed treatment disclosed in U.S. Pat. Nos. 5,106,648, 5,512,069, and 8,181,388 are incorporated herein by reference in their entireties and can be adapted for use with an active agent comprising the fermentation broths, fermentation broth products, or compositions provided herein. In certain embodiments, the composition used to treat the seed can contain agriculturally acceptable excipients that include, but are not limited to, woodflours, clays, activated carbon, diatomaceous earth, fine-grain inorganic solids, calcium carbonate and the like. Clays and inorganic solids that can be used with the fermentation broths, fermentation broth products, or compositions provided herein include, but are not limited to, calcium bentonite, kaolin, china clay, talc, perlite, mica, vermiculite, silicas, quartz powder, montmorillonite and mixtures thereof. Agriculturally acceptable adjuvants that promote sticking to the seed that can be used include, but are not limited to, polyvinyl acetates, polyvinyl acetate copolymers, hydrolyzed polyvinyl acetates, polyvinylpyrrolidone-vinyl acetate copolymer, polyvinyl alcohols, polyvinyl alcohol copolymers, polyvinyl methyl ether, polyvinyl methyl ether-maleic anhydride copolymer, waxes, latex polymers, celluloses including ethylcelluloses and methylcelluloses, hydroxy methylcelluloses, hydroxypropylcellulose, hydroxymethylpropylcelluloses, polyvinyl pyrrolidones, alginates, dextrins, malto-dextrins, polysaccharides, fats, oils, proteins, karaya gum, jaguar gum, tragacanth gum, polysaccharide gums, mucilage, gum arabics, shellacs, vinylidene chloride polymers and copolymers, soybean-based protein polymers and copolymers, lignosulfonates, acrylic copolymers, starches, polyvinylacrylates, zeins, gelatin, carboxymethylcellulose, chitosan, polyethylene oxide, acrylamide polymers and copolymers, polyhydroxyethyl acrylate, methylacrylamide monomers, alginate, ethylcellulose, polychloroprene and syrups or mixtures thereof. Other useful agriculturally acceptable adjuvants that can promote coating include, but are not limited to, polymers and copolymers of vinyl acetate, polyvinylpyrrolidone-vinyl acetate copolymer and water-soluble waxes. Various surfactants, dispersants, anticaking-agents, foam-control agents, and dyes disclosed herein and in U.S. Pat. No. 8,181,388 can be adapted for use with an active agent comprising the fermentation broths, fermentation broth products, or compositions provided herein. 
     Provided herein are compositions that comprise  Methylobacterium  that provide improved lettuce production relative to untreated plants that have not been exposed to the compositions. In certain embodiments, plant parts, including, but not limited to, a seed, a leaf, a fruit, a stem, a root, a tuber, or a coleoptile can be treated with the compositions provided herein to improve lettuce production. Treatments or applications can include, but are not limited to, spraying, coating, partially coating, immersing, and/or imbibing the plant or plant parts with the compositions provided herein. In certain embodiments, a seed, a leaf, a fruit, a stem, a root, a tuber, or a coleoptile can be immersed and/or imbibed with a liquid, semi-liquid, emulsion, or slurry of a composition provided herein. Such seed immersion or imbibition can be sufficient to provide for improved lettuce production in a treated plant or plant part in comparison to an untreated plant or plant part. Improved lettuce production includes, but is not limited, to increased root growth, increased leaf growth, increased seed production, and/or increased total biomass relative to untreated plants. In certain embodiments, plant seeds can be immersed and/or imbibed for at least 1, 2, 3, 4, 5, or 6 hours. Such immersion and/or imbibition can, in certain embodiments, be conducted at temperatures that are not deleterious to the plant seed or the  Methylobacterium . In certain embodiments, the seeds can be treated at about 15 to about 30 degrees Centigrade or at about 20 to about 25 degrees Centigrade. In certain embodiments, seed imbibition and/or immersion can be performed with gentle agitation. 
     Compositions provided herein comprising  Methylobacterium  are therefore expected to be useful in improving lettuce production. 
     In certain embodiments, an amount of a composition provided herein that is sufficient to provide for improved lettuce production can be a composition with  Methylobacterium  at a titer of at least about 1×10 6  colony-forming units per milliliter, at least about 5×10 6  colony-forming units per milliliter, at least about 1×10 7  colony-forming units per milliliter, at least about 5×10 8  colony-forming units per milliliter, at least about 1×10 9  colony-forming units per milliliter, at least about 1×10 10  colony-forming units per milliliter, or at least about 3×10 10  colony-forming units per milliliter. In certain embodiments, an amount of a composition provided herein that is sufficient to provide for improving lettuce production can be a composition with  Methylobacterium  at a titer of about least about 1×10 6  colony-forming units per milliliter, at least about 5×10 6  colony-forming units per milliliter, at least about 1×10 7  colony-forming units per milliliter, or at least about 5×10 8  colony-forming units per milliliter to at least about 6×10 10  colony-forming units per milliliter of a liquid or an emulsion. In certain embodiments, an amount of a composition provided herein that is sufficient to provide for improving lettuce production can be a fermentation broth product with a  Methylobacterium  titer of a solid phase of that product is at least about 5×10 8  colony-forming units per milliliter to at least about 5×10 13  colony-forming units of  Methylobacterium  per gram of the solid phase. In certain embodiments, an amount of a composition provided herein that is sufficient to provide for improving lettuce production can be a composition with a  Methylobacterium  titer of at least about 1×10 6  colony-forming units per gram, at least about 5×10 6  colony-forming units per gram, at least about 1×10 7  colony-forming units per gram, or at least about 5×10 8  colony-forming units per gram to at least about 6×10 10  colony-forming units of  Methylobacterium  per gram of particles in the composition containing the particles that comprise a solid substance wherein a mono-culture or co-culture of  Methylobacterium  is adhered thereto. In certain embodiments, an amount of a composition provided herein that is sufficient to provide for improving lettuce production can be a composition with a  Methylobacterium  titer of at least about 1×10 6  colony-forming units per mL, at least about 5×10 6  colony-forming units per mL, at least about 1×10 7  colony-forming units per mL, or at least about 5×10 8  colony-forming units per mL to at least about 6×10 10  colony-forming units of  Methylobacterium  per mL in a composition comprising an emulsion wherein a mono-culture or co-culture of a  Methylobacterium  adhered to a solid substance is provided therein or grown therein. In certain embodiments, an amount of a composition provided herein that is sufficient to provide for improving lettuce production can be a composition with a  Methylobacterium  titer of at least about 1×10 6  colony-forming units per mL, at least about 5×10 6  colony-forming units per mL, at least about 1×10 7  colony-forming units per mL, or at least about 5×10 8  colony-forming units per mL to at least about 6×10 10  colony-forming units of  Methylobacterium  per mL of in a composition comprising an emulsion wherein a mono-culture or co-culture of a  Methylobacterium  is provided therein or grown therein. 
     In certain embodiments, an amount of a composition provided herein that is sufficient to provide for improved lettuce production can be a composition with a  Methylobacterium  sp. at a titer of at least about 1×10 4  colony-forming units per milliliter, at least about 1×10 5  colony-forming units per milliliter, at least about 1×10 6  colony-forming units per milliliter, at least about 5×10 6  colony-forming units per milliliter, at least about 1×10 7  colony-forming units per milliliter, at least about 5×10 8  colony-forming units per milliliter, at least about 1×10 9  colony-forming units per milliliter, at least about 1×10 10  colony-forming units per milliliter, or at least about 3×10 10  colony-forming units per milliliter. In certain embodiments, an amount of a composition provided herein that is sufficient to provide for improved lettuce production can be a composition with  Methylobacterium  sp. at a titer of at least about 1×10 4  colony-forming units per milliliter, at least about 1×10 5  colony-forming units per milliliter, about least about 1×10 6  colony-forming units per milliliter, at least about 5×10 6  colony-forming units per milliliter, at least about 1×10 7  colony-forming units per milliliter, or at least about 5×10 8  colony-forming units per milliliter to at least about 6×10 10  colony-forming units per milliliter of a liquid or an emulsion. In certain embodiments, an amount of a composition provided herein that is sufficient to provide for improved lettuce production can be a fermentation broth product with a  Methylobacterium  sp. titer of a solid phase of that product is at least about 1×10 4  colony-forming units per gram, at least about 1×10 5  colony-forming units per gram, at least about 1×10 6  colony-forming units per gram, at least about 5×10 6  colony-forming units per gram, at least about 1×10 7  colony-forming units per gram, at least about 5×10 8  colony-forming units per gram, at least about 1×10 9  colony-forming units per gram, or at least about 5×10 9  colony-forming units per gram to at least about 6×10 10  colony-forming units of  Methylobacterium  per gram, at least about 1×10 11  colony-forming units of  Methylobacterium  per gram, at least about 1×10 12  colony-forming units of  Methylobacterium  per gram, at least about 1×10 13  colony-forming units of  Methylobacterium  per gram, or at least about 5×10 13  colony-forming units of  Methylobacterium  per gram of the solid phase. In certain embodiments, an amount of a composition provided herein that is sufficient to provide for improved lettuce production can be a composition with a  Methylobacterium  titer of at least about 1×10 6  colony-forming units per gram, at least about 5×10 6  colony-forming units per gram, at least about 1×10 7  colony-forming units per gram, at least about 5×10 8  colony-forming units per gram, at least about 1×10 9  colony-forming units per gram, or at least about 5×10 9  colony-forming units per gram to at least about 6×10 10  colony-forming units of  Methylobacterium  per gram, at least about 1×10 11  colony-forming units of  Methylobacterium  per gram, at least about 1×10 12  colony-forming units of  Methylobacterium  per gram, at least about 1×10 13  colony-forming units of  Methylobacterium  per gram, or at least about 5×10 13  colony-forming units of  Methylobacterium  per gram of particles in the composition containing the particles that comprise a solid substance wherein a mono-culture or co-culture of  Methylobacterium  sp. is adhered thereto. In certain embodiments, an amount of a composition provided herein that is sufficient to provide for improved lettuce production can be a composition with a  Methylobacterium  titer of at least about 1×10 6  colony-forming units per mL, at least about 5×10 6  colony-forming units per mL, at least about 1×10 7  colony-forming units per mL, or at least about 5×10 8  colony-forming units per mL to at least about 6×10 10  colony-forming units of  Methylobacterium  per mL in a composition comprising an emulsion wherein a mono-culture or co-culture of a  Methylobacterium  sp. adhered to a solid substance is provided therein or grown therein. In certain embodiments, an amount of a composition provided herein that is sufficient to provide for improved lettuce production can be a composition with a  Methylobacterium  titer of at least about 1×10 6  colony-forming units per mL, at least about 5×10 6  colony-forming units per mL, at least about 1×10 7  colony-forming units per mL, or at least about 5×10 8  colony-forming units per mL to at least about 6×10 10  colony-forming units of  Methylobacterium  per mL of in a composition comprising an emulsion wherein a mono-culture or co-culture of a  Methylobacterium  sp. is provided therein or grown therein. 
     In certain embodiments, compositions with a  Methylobacterium  sp. at a titer of at least about 1×10 4  colony-forming units per milliliter, at least about 1×10 5  colony-forming units per milliliter, at least about 1×10 6  colony-forming units per milliliter, at least about 5×10 6  colony-forming units per milliliter, at least about 1×10 7  colony-forming units per milliliter, at least about 5×10 8  colony-forming units per milliliter, at least about 1×10 9  colony-forming units per milliliter, at least about 1×10 10  colony-forming units per milliliter, or at least about 3×10 10  colony-forming units per milliliter are provided or used. In certain embodiments, compositions with  Methylobacterium  sp. at a titer of at least about 1×10 4  colony-forming units per milliliter, at least about 1×10 5  colony-forming units per milliliter, about least about 1×10 6  colony-forming units per milliliter, at least about 5×10 6  colony-forming units per milliliter, at least about 1×10 7  colony-forming units per milliliter, or at least about 5×10 8  colony-forming units per milliliter to at least about 6×10 10  colony-forming units per milliliter of a liquid or an emulsion are provided. In certain embodiments, fermentation broth products with a  Methylobacterium  sp. titer of a solid phase of that product is at least about 1×10 4  colony-forming units per gram, at least about 1×10 5  colony-forming units per gram, at least about 1×10 6  colony-forming units per gram, at least about 5×10 6  colony-forming units per gram, at least about 1×10 7  colony-forming units per gram, at least about 5×10 8  colony-forming units per gram, at least about 1×10 9  colony-forming units per gram, or at least about 5×10 9  colony-forming units per gram to at least about 6×10 10  colony-forming units of  Methylobacterium  per gram, at least about 1×10 11  colony-forming units of  Methylobacterium  per gram, at least about 1×10 12  colony-forming units of  Methylobacterium  per gram, at least about 1×10 13  colony-forming units of  Methylobacterium  per gram, or at least about 5×10 13  colony-forming units of  Methylobacterium  per gram of the solid phase are provided. In certain embodiments, compositions with a  Methylobacterium  titer of at least about 1×10 6  colony-forming units per gram, at least about 5×10 6  colony-forming units per gram, at least about 1×10 7  colony-forming units per gram, at least about 5×10 8  colony-forming units per gram, at least about 1×10 9  colony-forming units per gram, or at least about 5×10 9  colony-forming units per gram to at least about 6×10 10  colony-forming units of  Methylobacterium  per gram, at least about 1×10 11  colony-forming units of  Methylobacterium  per gram, at least about 1×10 12  colony-forming units of  Methylobacterium  per gram, at least about 1×10 13  colony-forming units of  Methylobacterium  per gram, or at least about 5×10 13  colony-forming units of  Methylobacterium  per gram of particles in the composition containing the particles that comprise a solid substance wherein a mono-culture or co-culture of  Methylobacterium  sp. is adhered thereto are provided. In certain embodiments, compositions with a  Methylobacterium  titer of at least about 1×10 6  colony-forming units per mL, at least about 5×10 6  colony-forming units per mL, at least about 1×10 7  colony-forming units per mL, or at least about 5×10 8  colony-forming units per mL to at least about 6×10 10  colony-forming units of  Methylobacterium  per mL in a composition comprising an emulsion wherein a mono-culture or co-culture of a  Methylobacterium  sp. adhered to a solid substance is provided therein or grown therein are provided. In certain embodiments, compositions with a  Methylobacterium  titer of at least about 1×10 6  colony-forming units per mL, at least about 5×10 6  colony-forming units per mL, at least about 1×10 7  colony-forming units per mL, or at least about 5×10 8  colony-forming units per mL to at least about 6×10 10  colony-forming units of  Methylobacterium  per mL of in a composition comprising an emulsion wherein a mono-culture or co-culture of a  Methylobacterium  sp. is provided therein or grown therein is provided. In certain embodiments of any of the aforementioned compositions, the  Methylobacterium  sp. is selected from the group consisting of NLS0017 (NRRL B-50931), NLS0020 (NRRL B-50930), NLS0021 (NRRL B-50939), NLS0037 (NRRL B-50941), NLS0038 (NRRL B-50942), NLS0042 (NRRL B-50932), NLS0046 (NRRL B-50929), NLS0062 (NRRL B-50937), NLS0064 (NRRL B-50938), NLS0065 (NRRL B-50935), NLS0066 (NRRL B-50940), NLS0068 (NRRL B-50934), NLS0069 (NRRL B-50936), NLS0089 (NRRL B-50933), and derivatives thereof. In certain embodiments of any of the aforementioned compositions, the composition can further comprise an agriculturally acceptable adjuvant, an agriculturally acceptable excipient, or combination thereof. In certain embodiments of any of the aforementioned compositions, the  Methylobacterium  sp. is selected from the group consisting of NLS0017 (NRRL B-50931), NLS0020 (NRRL B-50930), NLS0021 (NRRL B-50939), NLS0037 (NRRL B-50941), NLS0038 (NRRL B-50942), NLS0042 (NRRL B-50932), NLS0046 (NRRL B-50929), NLS0062 (NRRL B-50937), NLS0064 (NRRL B-50938), NLS0065 (NRRL B-50935), NLS0066 (NRRL B-50940), NLS0068 (NRRL B-50934), NLS0069 (NRRL B-50936), NLS0089 (NRRL B-50933), derivatives thereof; and also comprises an agriculturally acceptable adjuvant, excipient, or combination thereof. 
     EXAMPLES 
     The following examples are included to demonstrate preferred embodiments of the invention. It will be appreciated by those of skill in the art that the techniques disclosed in the following examples represent techniques discovered by the Applicants to function well in the practice of the invention, and thus can be considered to constitute preferred modes for its practice. However, those of skill in the art should, in light of the instant disclosure, appreciate that many changes can be made in the specific embodiments that are disclosed, while still obtaining like or similar results, without departing from the scope of the invention**. 
     Example 1. Culturing of PPFM Strains in a Liquid Growth Media Supplemented with a Solid Substance 
     The liquid growth medium used to culture the PPFM cultures was a base salts medium supplemented with glycerol, peptone, and diatomaceous earth. The base salts medium used was ammonium mineral salts (AMS) medium. AMS medium contains, per liter, 700 milligrams of dibasic potassium phosphate anhydrous, 540 milligrams of monobasic potassium phosphate anhydrous, one gram of magnesium sulfate heptahydrate, 500 milligrams of ammonium chloride anhydrous, and 200 milligrams of calcium chloride dihydrate. 
     AMS base medium was prepared from three stock solutions, listed below: 
     Stock Solution I: For One Liter at 50× Concentration 
     
       
         
           
               
               
               
             
               
                   
                   
               
             
            
               
                   
                 dibasic potassium phosphate, anhydrous 
                 35 grams 
               
               
                   
                 monobasic potassium phosphate, anhydrous 
                 27 grams 
               
               
                   
                   
               
            
           
         
       
     
     Stock Solution II: For One Liter at 50× Concentration 
     
       
         
           
               
               
               
             
               
                   
                   
               
             
            
               
                   
                 magnesium sulfate heptahydrate 
                 50 grams 
               
               
                   
                 ammonium chloride, anhydrous 
                 25 grams 
               
               
                   
                   
               
            
           
         
       
     
     Stock Solution III: For One Liter at 50× Concentration 
     
       
         
           
               
               
               
             
               
                   
                   
               
             
            
               
                   
                 calcium chloride dihydrate 
                 10 grams 
               
               
                   
                   
               
            
           
         
       
     
     Stock solutions I, II, and III were autoclaved separately. 
     To prepare one liter of liquid AMS medium with glycerol, peptone, and diatomaceous earth, the following were added to 920 ml of distilled water: 
     20 ml of stock solution I 
     20 ml of stock solution II 
     20 ml of stock solution III 
     20 ml of a 50% glycerol stock solution 
     10 grams of peptone 
     2 grams of diatomaceous earth 
     The resulting solution with suspended diatomaceous earth was sterilized by autoclaving. 
     Two liters of the above AMS medium were placed into a four-liter flask. Two milliliters of liquid culture PPFMs were added to the media to inoculate. The flask was then placed in an incubated shaker set to 240 RPM and 30 degrees Celsius. The cultures were grown for six days and then stored at 4 degrees Celsius for future use. 
     Example 2. Seed Inoculation of ‘Rex’ Lettuce to Identify PPFMs that Enhance Root and Shoot Growth 
     Seeding 
     A 104 cell Oasis HorticubeXL™ (bottom grooved, single dibble; Smithers-Oasis North America, Kent, Ohio, USA) was placed into a 1020 flat without holes. Four cubes were removed in the center of grid to allow for bottom watering. The Oasis HorticubeXL™ was watered in so that it was fully saturated, the shower setting with tempered water was used. One seed was placed in each cell for a total of 100 seeds per group. 
     Inoculation of Lettuce Seeds 
     The PPFM strains to be tested were grown as described in Example 1 in a liquid medium supplemented with a solid substance. In the biohood, the desired amount of PPFM solution was pipetted into conical tubes (make sure to swirl/shake bottle vigorously before pipetting to suspend particulates). A centrifuge was used to spin down at 3500 RPM for 15 minutes at 23° C. While tubes were spun, a volume of tepid tap water was measured out to bring the volume of each sample up to total volume. 
     Liquid was carefully poured off from each tube, careful to keep the pellet intact. The appropriate volume of tap water was added to each tube to match its initial volume of PPFM solution. Water re-suspended PPFMS were used as quickly as possible. 
     100 microliters of solution (PPFM solution for treated groups and tap water for control groups) was pipetted onto the top of each seed. After every 3 rows, the tube was capped and shaken to resuspend any PPFMs that may have settled to the bottom. Pipette tips were changed between each group to avoid cross contamination. Tags were labeled and dated for each flat and clear humidity domes place on top of flat. The flat were placed in a growth chamber with temperature settings at 20 C and 12 hour days with 200 micromole lighting. 
     Growth 
     After five to six days, domes were removed after seeds were germinated. Flats were bottom watered only and fertilized with Jack&#39;s™ 15-16-17 (JR PETERS, Inc. Allentown, Pa., USA) at every watering (approximately every other day). 
     Daily repositioning of the flats was carried out to prevent potential effects on growth due to variations of light conditions in the growth chamber. 
     Processing 
     Flats were harvested between two and three weeks. Clear humidity domes were placed on each flat to prevent evapotranspiration during transport. Domes were left in place until flat was being processed. Each plant was cut directly below the cotyledons and immediately weighed on an analytical balance. 
     Observations 
     It was observed that some strains repeatedly showed an increase in shoot biomass of Lettuce seedlings when a seed was treated at the time of planting. Visual observations of root mass and development were also made, treated groups showed more growth at the time of harvest. Due to the natural variance of biological systems all samples sizes were 98-100 plants minimum and anything below 12% difference was not considered significant. 
     Conclusion 
     It was apparent that strains NLS0017, NLS0020, NLS0066, NLS0065, and NLS0089 show an increase in wet weight of lettuce seedlings following seed treatment. Strains NLS0069, NLS0037, NLS0038, and NLS0062 exhibited negligible increases in wet weight in comparison to the controls. Also noted along with an increase in shoot biomass is a corresponding increase in root development. 
     
       
         
           
               
             
               
                 TABLE 2 
               
             
            
               
                   
               
               
                 Effects of seed treatments on lettuce growth 
               
            
           
           
               
               
               
               
            
               
                   
                 seedling wet weight (mg) 
                 difference 
                 confidence 
               
            
           
           
               
               
               
               
               
               
            
               
                 strain 
                 titer 
                 control 
                 experimental 
                 (%) 
                 interval 
               
               
                   
               
            
           
           
               
               
               
               
               
               
            
               
                 NLS0017 
                 2.7E+08 
                 226.18 
                 306.36 
                 35.45% 
                 0.000 
               
               
                 NLS0017 
                 1.4E+08 
                 298.27 
                 353.34 
                 18.46% 
                 0.012 
               
               
                 NLS0017 
                 2.7E+08 
                 169.56 
                 176.68 
                 4.20% 
                 0.567 
               
               
                 NLS0017 
                 1.1E+09 
                 98.92 
                 167.51 
                 69.34% 
                 0.000 
               
               
                 NLS0020 
                 7.2E+08 
                 226.18 
                 274.46 
                 21.35% 
                 0.027 
               
               
                 NLS0020 
                 1.2E+09 
                 98.92 
                 157.11 
                 58.83% 
                 0.000 
               
               
                 NLS0020 
                 1.2E+09 
                 462.20 
                 614.72 
                 33.00% 
                 0.000 
               
               
                 NLS0021 
                 ND 2   
                 462.20 
                 539.39 
                 16.70% 
                 0.008 
               
               
                 NLS0037 
                 3.0E+08 
                 226.18 
                 258.68 
                 14.37% 
                 0.085 
               
               
                 NLS0038 
                 5.2E+07 
                 462.20 
                 514.99 
                 11.42% 
                 0.070 
               
               
                 NLS0042 
                 2.1E+08 
                 226.18 
                 310.85 
                 37.44% 
                 0.000 
               
               
                 NLS0042 
                 1.1E+08 
                 169.56 
                 189.46 
                 11.73% 
                 0.105 
               
               
                 NLS0046 
                 1.8E+09 
                 462.20 
                 511.78 
                 10.73% 
                 0.084 
               
               
                 NLS0062 
                 1.8E+08 
                 169.56 
                 187.62 
                 10.65% 
                 0.121 
               
               
                 NLS0064 
                 ND 2   
                 169.56 
                 157.67 
                 −7.01% 
                 0.275 
               
               
                 NLS0065 
                 1.2E+08 
                 169.56 
                 211.92 
                 24.98% 
                 0.001 
               
               
                 NLS0065 
                 9.1E+07 
                 98.92 
                 132.35 
                 33.80% 
                 0.000 
               
               
                 NLS0066 
                 5.9E+08 
                 56.15 
                 69.57 
                 23.91% 
                 0.000 
               
               
                 NLS0066 
                 4.2E+08 
                 546.61 
                 665.46 
                 21.74% 
                 0.000 
               
               
                 NLS0066 
                 1.2E+08 
                 98.92 
                 129.81 
                 31.23% 
                 0.000 
               
               
                 NLS0068 
                 3.1E+08 
                 213.52 
                 234.95 
                 10.04% 
                 0.029 
               
               
                 NLS0069 
                 5.6E+07 
                 226.18 
                 244.25 
                 7.99% 
                 0.307 
               
               
                 NLS0069 
                 5.6E+07 
                 298.27 
                 332.53 
                 11.49% 
                 0.144 
               
               
                 NLS0089 
                 1.5E+08 
                 98.92 
                 146.99 
                 48.60% 
                 0.000 
               
               
                 NLS0089 
                 ND 2   
                 462.20 
                 600.82 
                 29.99% 
                 0.000 
               
               
                   
               
               
                   1 Each line represents data obtained from a separate flats of plants obtained from treated seed versus control seed. 
               
               
                   2 ND: not determined. 
               
            
           
         
       
     
     Example 3. Foliar Application of ‘Rex’ Lettuce to Observe how PPFMs Effect Root and Shoot Growth 
     Seeding 
     A 104 cell Oasis HorticubeXL (bottom grooved, single dibble) was placed into a 1020 flat without holes. Four cubes were removed in the center of grid to allow for bottom watering. Oasis was watered in so that it was fully saturated, the shower setting with tempered water was used. One seed was placed in each cell for a total of 100 seeds per group. Tags were labeled and dated for each flat and clear humidity domes place on top of flat. The flat were placed in a growth chamber with temperature settings at 20 C and 12-hour days with 200 micromole lighting. 
     Inoculation of Lettuce Seedlings 
     After five to six days, domes were removed after seeds had germinated. Plants were inoculated at this time, when only the cotyledons had emerged. The PPFM strains to be tested were grown as described in Example 1 in a liquid medium supplemented with a solid substance. The PPFM strains to be tested were grown as described in Example 1 in a liquid medium supplemented with a solid substance. In the biohood, the desired amount of PPFM solution was pipetted into conical tubes (make sure to swirl/shake bottle vigorously before pipetting to suspend particulates). A centrifuge was used to spin down at 3500 RPM for 15 minutes at 23° C. While tubes were spun, a volume of tepid tap water was measured out to bring the volume of each sample up to total volume. 
     Liquid was carefully poured off from each tube, careful to keep the pellet intact. The appropriate volume of tap water was added to each tube to match its initial volume of PPFM solution. Water re-suspended PPFMS were used as quickly as possible. 
     100 mL of PPFM solution (tap water for control) was poured into a 1 L Solo™ Handheld Sprayer (Solo™, Newport News, Va., USA). The flat was removed from the group to avoid cross contamination. The finest mist setting was used and an even coat of solution was sprayed over the top of the seedlings, ensuring even coverage across the entire flat. For each group this was repeated, using appropriate treatment. 
     Growth 
     Flats were bottom watered only and fertilized with Jack&#39;s™ 15-16-17 (JR PETERS, Inc. Allentown, Pa., USA) at every watering (approximately every other day). Daily repositioning of the flats was carried out to prevent potential effects on growth due to variations of light conditions in the growth chamber. 
     Processing 
     Flats were harvested between two and three weeks. Clear humidity domes were placed on each flat to prevent evapotranspiration during transport. Domes were left in place until flat was being processed. Each plant was cut directly below the cotyledons and immediately weighed on an analytical balance. 
     Observations 
     It was been observed that some strains repeatedly show an increase in shoot biomass of Lettuce seedlings when the seedling was treated at the cotyledon stage. Visual observations of root mass and development were also made, that treated groups showed more growth at the time of harvest. Due to the natural variance of biological systems all samples sizes were a 98-100 plants minimum and anything below 12% difference was not considered significant. 
     Conclusion 
     It is apparent that strains NLS0042, NLS0017, NLS0020, and NLS0068 show an increase in wet weight of lettuce seedlings following foliar application. Strains NLS0069, NLS0037, NLS0038, and NLS0062 exhibited negligible increases in wet weight in comparison to the controls. Also noted along with an increase in shoot biomass is a corresponding increase in root development. 
     
       
         
           
               
             
               
                 TABLE 3 
               
             
            
               
                   
               
               
                 Effects of foliar treatments on lettuce growth 
               
            
           
           
               
               
               
               
            
               
                   
                 seedling wet weight (mg) 
                 difference 
                 confidence 
               
            
           
           
               
               
               
               
               
               
            
               
                 strain 
                 titers 
                 control 
                 experimental 
                 (%) 
                 interval 
               
               
                   
               
            
           
           
               
               
               
               
               
               
            
               
                 NLS0017 
                 1.4E+08 
                 197.04 
                 213.76 
                 8.49% 
                 0.075 
               
               
                 NLS0017 
                 1.1E+09 
                 157.72 
                 211.03 
                 33.81% 
                 0.000 
               
               
                 NLS0020 
                 2.2E+08 
                 104.41 
                 145.95 
                 39.79% 
                 0.000 
               
               
                 NLS0020 
                 7.2E+08 
                 205.34 
                 247.12 
                 20.34% 
                 0.030 
               
               
                 NLS0020 
                 1.2E+09 
                 280.84 
                 260.95 
                 −7.08% 
                 0.224 
               
               
                 NLS0021 
                 1.6E+07 
                 157.72 
                 178.46 
                 13.15% 
                 0.021 
               
               
                 NLS0037 
                 ND 2   
                 197.04 
                 198.93 
                 0.96% 
                 0.846 
               
               
                 NLS0038 
                 7.4E+07 
                 197.04 
                 186.04 
                 −5.58% 
                 0.250 
               
               
                 NLS0042 
                 9.3E+07 
                 103.36 
                 127.05 
                 22.92% 
                 0.000 
               
               
                 NLS0042 
                 2.1E+08 
                 205.34 
                 235.92 
                 14.89% 
                 0.095 
               
               
                 NLS0042 
                 6.4E+07 
                 298.27 
                 331.62 
                 11.18% 
                 0.138 
               
               
                 NLS0042 
                 1.1E+08 
                 157.72 
                 196.12 
                 24.35% 
                 0.000 
               
               
                 NLS0046 
                 1.8E+09 
                 157.72 
                 195.03 
                 23.66% 
                 0.000 
               
               
                 NLS0062 
                 ND 2   
                 280.84 
                 243.09 
                 −13.44% 
                 0.018 
               
               
                 NLS0064 
                 ND 2   
                 205.34 
                 240.47 
                 17.10% 
                 0.042 
               
               
                 NLS0064 
                 ND 2   
                 298.27 
                 306.88 
                 2.89% 
                 0.691 
               
               
                 NLS0065 
                 4.2E+08 
                 197.04 
                 214.59 
                 8.91% 
                 0.077 
               
               
                 NLS0066 
                 5.9E+08 
                 205.34 
                 241.92 
                 17.81% 
                 0.035 
               
               
                 NLS0066 
                 1.2E+08 
                 280.84 
                 166.98 
                 −40.54% 
                 0.000 
               
               
                 NLS0068 
                 1.7E+08 
                 104.41 
                 204.26 
                 95.65% 
                 0.000 
               
               
                 NLS0068 
                 1.6E+08 
                 205.34 
                 288.46 
                 40.47% 
                 0.000 
               
               
                 NLS0068 
                 3.1E+08 
                 298.27 
                 296.68 
                 −0.53% 
                 0.944 
               
               
                 NLS0068 
                 3.1E+08 
                 280.84 
                 264.65 
                 −5.76% 
                 0.337 
               
               
                 NLS0068 
                 3.1E+08 
                 157.72 
                 183.84 
                 16.56% 
                 0.010 
               
               
                 NLS0069 
                 4.5E+07 
                 99.85 
                 103.54 
                 3.70% 
                 0.711 
               
               
                 NLS0089 
                 1.3E+09 
                 280.84 
                 282.94 
                 0.75% 
                 0.896 
               
               
                   
               
               
                   1 Each line represents data obtained from a separate flat of treated versus control plants. 
               
               
                   2 ND: not determined. 
               
            
           
         
       
     
     Example 4. Identification of Nucleic Acid Polymorphisms Present in  Methylobacterium  that Improve Lettuce Production 
     Whole genome sequencing libraries for the Illumina™ high-throughput sequencing platform are generated for  Methylobacterium  sp. isolates provided in Table 1 using Illumina TRUSEQ™ or NEXTERA™ DNA sample preparation kits (described on the internet sites res.illumina.com/documents/products/datasheets/datasheet_truseq_dna_sample_prep_kits.pdf and res.illumina.com/documents/products/datasheets/datasheet_nextera_dna_sample_prep.pdf) using the methods described by the manufacturer. The resultant libraries are then subjected to pyrosequencing (Siqueira J F et al. J Oral Microbiol. 2012; 4: 10.3402/jom.v4i0.10743). Raw pyrosequencing-generated genomic sequence data are subjected to adaptor- and quality-based trimming for quality control. Whole-genome Shotgun Sequence Assembly (1) is achieved by assembling quality-passed data using the de novo assembler Velvet (2). For gene finding and annotation, reference training data is leveraged from TIGRFAM (9), Pfam, COG (10), and UniRef100 (11). The rRNAs are identified with RNAmmer (5), protein-coding genes are identified with Glimmer (3) or Maker (6), and tRNAs are identified with tRNAscan-SE (4). Gene functions are assigned with blastx (7), blastp (7), HMMER (8), and InterProScan against comprehensive protein databases described above (Reference Data). 
     Detection of polymorphisms (SNP or other DNA variations occurring as a result of insertions, deletions, and substitutions (Indels)) in the  Methylobacterium  sp. isolates of Table 1 is performed with BWA (12) and the Samtools suite (on the internet at samtools.sourceforge.net/), structural variation is identified with BreakDancer (on the internet at breakdancer.sourceforge.net/) and CoGE (on the internet at genomevolution.org/CoGe/). Polymorphisms diagnostic for  Methylobacterium  that provide for improved lettuce production are identified by comparisons of the sequences of exemplary  Methylobacterium  isolates NLS0020, NLS0066, NLS0017, NLS0065, NLS0089, NLS0042, and/or NLS0068 that improve lettuce production but that are absent from one or more  Methylobacterium  isolates that do not improve lettuce production. Polymorphisms present in exemplary  Methylobacterium  isolates NLS0020, NLS0066, NLS0017, NLS0065, NLS0089, NLS0042, and/or NLS0068 that improve lettuce production but that are absent in exemplary  Methylobacterium  isolates that do not improve lettuce production are then used to identify other  Methylobacterium  isolates that improve lettuce production. 
     REFERENCES FOR EXAMPLE 4 
     
         
         1. Miller J R, Koren S, Sutton G (2010) Assembly algorithms for next-generation sequencing data. Genomics 95: 315-327. 
         2. Zerbino D R, Birney E (2008) Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res 18: 821-829. 
         3. Delcher A L, Bratke K A, Powers E C, Salzberg S L (2007) Identifying bacterial genes and endosymbiont DNA with Glimmer. Bioinformatics 23: 673-679. 
         4. Lowe T M, Eddy S R (1997) tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res 25: 955-964. 
         5. Lagesen K, Hallin P, Rodland E A, Staerfeldt H H, Rognes T, et al. (2007) RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res 35: 3100-3108. 
         6. Cantarel B, Korf I, Robb S, et al. (2008) MAKER: An easy-to-use annotation pipeline designed for emerging model organism genomes. Genome Research 18: 188-196. 
         7. Altschul S F, Madden T L, Schaffer A A, Zhang J, Zhang Z, et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402. 
         8. Eddy S R (2009) A new generation of homology search tools based on probabilistic inference. Genome Inform 23: 205-211. 
         9. Haft D H, Selengut J D, White O (2003) The TIGRFAMs database of protein families. Nucleic Acids Res 31: 371-373. 
         10. Tatusov R L, Fedorova N D, Jackson J D, Jacobs A R, Kiryutin B, et al. (2003) The COG database: an updated version includes eukaryotes. BMC Bioinformatics 4: 41. 
         11. Suzek B E, Huang H, McGarvey P, Mazumder R, Wu C H (2007) UniRef: comprehensive and non-redundant UniProt reference clusters. Bioinformatics 23: 1282-1288. 
         12. Li H. and Durbin R. (2009) Fast and accurate short read alignment with Burrows-Wheeler Transform. Bioinformatics, 25:1754-60. 
       
    
     Example 5. Seed Inoculation of ‘Flandria’ Lettuce with PPFMs Increases Shoot and Root Biomass 
     Seeding 
     A 276 cell sheet of Oasis HORTICUBES® (1-inch Thin-Cut; Smithers-Oasis North America, Kent, Ohio, USA) was placed into a 1020 mesh flat. The flat was divided in half with a piece of plastic to allow for two groups per flat. The Oasis HORTICUBES® were watered to full saturation. Flandria lettuce seed from Rijk Zwaan USA (Salinas, Calif., USA) was used. One seed was placed in each cell for a total of 132 or 144 seeds per group. 
     Inoculation of Lettuce Seeds 
     The PPFM strains to be tested were grown as described in Example 1 in a liquid medium supplemented with diatomaceous earth at 2 grams/liter. At the bench, the desired amount of PPFM solution was pipetted into conical tubes (making sure to swirl/shake bottle vigorously before pipetting to suspend particulates). A centrifuge was used to pellet the cells at 7500 RPM for 5 minutes at 23° C. The supernatant was discarded, and the PPFM pellets were resuspended in an equal volume of water. 
     100 microliters of solution (PPFM solution for treated groups and tap water for control groups) were pipetted onto the top of each seed. The tube was shaken periodically to keep the PPFM cells in suspension. Clear humidity domes were placed over each flat. The flats were placed in a greenhouse with temperature settings of 30° C. during the day, 28° C. at night and with a 16-hour day length attained with using supplemental light as necessary. 
     Growth 
     After two to three days after planting, the seeds had germinated, and the humidity domes were removed. The flats were top watered and fertilized with Jack&#39;s™ 15-16-17 (JR PETERS, Inc. Allentown, Pa., USA) at every watering. Daily repositioning of the flats was carried out to prevent potential effects on growth due to variations of light conditions in the growth chamber. 
     Processing 
     The lettuce seedlings were harvested at 10 days after planting. Each plant was cut directly below the cotyledons and immediately weighed on an analytical balance. 
     Observations 
     It was observed that some strains repeatedly showed an increase in shoot biomass of the lettuce seedlings following seed treatment. Visual observations of root mass and development were also made, and it was noted that treated groups showed more growth at the time of harvest. The outside row of each group was not harvested in order to eliminate any edge effects in the flats. 
     Conclusion 
     It was apparent that PPFM strains NLS0017, NLS0020, NLS0066 and NLS0068 showed a reproducible and statistically significant increase in the wet weight of lettuce seedlings following seed treatment. Also noted along with an increase in shoot biomass was a corresponding increase in root development. 
     
       
         
           
               
             
               
                 TABLE 4 
               
             
            
               
                   
               
               
                 Results for Seed inoculation of ‘Flandria’ Lettuce 
               
            
           
           
               
               
               
            
               
                   
                 seedling wet weight 
                   
               
            
           
           
               
               
               
               
               
               
            
               
                   
                 Titer 
                 Control 
                 Experimental 
                 Difference 
                 confidence 
               
               
                 Strain 
                 (CFU/mL) 
                 (Water) 
                 (PPFM) 
                 (%) 
                 interval 
               
               
                   
               
            
           
           
               
               
               
               
               
               
            
               
                 NLS0017 
                 1.1E+09 
                 103.38 
                 152.14 
                 47.16% 
                 0.000 
               
               
                 NLS0017 
                 1.1E+09 
                 90.98 
                 174.23 
                 91.51% 
                 0.000 
               
               
                 NLS0017 
                 1.1E+09 
                 45.47 
                 80.74 
                 77.57% 
                 0.000 
               
               
                 NLS0017 
                 1.1E+09 
                 101.46 
                 174.29 
                 71.78% 
                 0.000 
               
               
                 NLS0017 
                 1.1E+09 
                 265.34 
                 296.75 
                 11.84% 
                 0.000 
               
               
                 NLS0020 
                 1.2E+09 
                 103.38 
                 123.00 
                 18.98% 
                 0.000 
               
               
                 NLS0020 
                 1.2E+09 
                 90.98 
                 174.92 
                 92.27% 
                 0.000 
               
               
                 NLS0020 
                 1.2E+09 
                 45.47 
                 72.21 
                 58.80% 
                 0.000 
               
               
                 NLS0020 
                 1.2E+09 
                 41.85 
                 62.27 
                 48.79% 
                 0.000 
               
               
                 NLS0020 
                 1.2E+09 
                 195.98 
                 232.44 
                 18.60% 
                 0.000 
               
               
                 NLS0020 
                 1.2E+09 
                 89.68 
                 121.69 
                 35.68% 
                 0.000 
               
               
                 NLS0020 
                 1.2E+09 
                 136.75 
                 171.62 
                 25.50% 
                 0.000 
               
               
                 NLS0020 
                 1.2E+09 
                 69.18 
                 141.55 
                 104.59% 
                 0.000 
               
               
                 NLS0020 
                 1.2E+09 
                 38.38 
                 63.65 
                 65.84% 
                 0.000 
               
               
                 NLS0020 
                 1.2E+09 
                 49.53 
                 85.78 
                 73.18% 
                 0.000 
               
               
                 NLS0037 
                 not 
                 183.18 
                 199.05 
                 8.67% 
                 0.008 
               
               
                   
                 determined 
               
               
                 NLS0037 
                 1.8E+08 
                 68.26 
                 136.58 
                 100.08% 
                 0.000 
               
               
                 NLS0038 
                 5.2E+07 
                 183.18 
                 201.56 
                 10.03% 
                 0.007 
               
               
                 NLS0038 
                 5.2E+07 
                 68.26 
                 108.01 
                 58.23% 
                 0.000 
               
               
                 NLS0038 
                 5.2E+07 
                 129.32 
                 154.95 
                 19.82% 
                 0.000 
               
               
                 NLS0042 
                 1.1E+08 
                 59.84 
                 110.04 
                 83.90% 
                 0.000 
               
               
                 NLS0042 
                 1.1E+08 
                 183.18 
                 186.49 
                 1.81% 
                 0.650 
               
               
                 NLS0042 
                 1.1E+08 
                 68.26 
                 99.76 
                 46.15% 
                 0.000 
               
               
                 NLS0062 
                 3.6E+07 
                 129.32 
                 156.18 
                 20.77% 
                 0.000 
               
               
                 NLS0062 
                 3.6E+07 
                 140.95 
                 190.36 
                 35.06% 
                 0.000 
               
               
                 NLS0064 
                 4.5E+08 
                 129.32 
                 158.58 
                 22.63% 
                 0.000 
               
               
                 NLS0064 
                 4.5E+08 
                 140.95 
                 231.99 
                 64.60% 
                 0.000 
               
               
                 NLS0065 
                 3.7E+07 
                 140.95 
                 211.13 
                 49.80% 
                 0.000 
               
               
                 NLS0066 
                 1.2E+08 
                 103.38 
                 180.71 
                 74.80% 
                 0.000 
               
               
                 NLS0066 
                 1.2E+08 
                 90.98 
                 163.37 
                 79.57% 
                 0.000 
               
               
                 NLS0066 
                 1.2E+08 
                 45.47 
                 96.07 
                 111.28% 
                 0.000 
               
               
                 NLS0066 
                 1.2E+08 
                 91.32 
                 114.02 
                 24.86% 
                 0.000 
               
               
                 NLS0066 
                 1.2E+08 
                 209.04 
                 279.74 
                 33.83% 
                 0.000 
               
               
                 NLS0068 
                 2.1E+08 
                 68.26 
                 98.67 
                 44.55% 
                 0.000 
               
               
                 NLS0068 
                 1.7E+08 
                 129.32 
                 181.12 
                 40.06% 
                 0.000 
               
               
                 NLS0068 
                 1.7E+08 
                 140.95 
                 217.89 
                 54.59% 
                 0.000 
               
               
                 NLS0069 
                 1.6E+08 
                 59.84 
                 113.78 
                 90.15% 
                 0.000 
               
               
                 NLS0069 
                 5.6E+07 
                 68.26 
                 75.17 
                 10.12% 
                 0.095 
               
               
                 NLS0069 
                 1.5E+08 
                 129.32 
                 164.10 
                 26.89% 
                 0.000 
               
               
                 NLS0089 
                 3.0E+07 
                 140.95 
                 225.72 
                 60.14% 
                 0.000 
               
               
                   
               
            
           
         
       
     
     REFERENCES 
     
         
         1. Abanda-Nkpwatt, D., M. Musch, J. Tschiersch, M. Boettner, and W. Schwab. 2006. Molecular interaction between  Methylobacterium extorquens  and seedlings: growth promotion, methanol consumption, and localization of the methanol emission site. J. Exp. Bot. 57: 4025-4032. 
         2. Broekaert W F, Terras F R, Cammue B P, Vanderleyden J (1990) An automated quantitative assay for fungal growth inhibition. FEMS Microbiology Letters 69: 55-60. 
         3. Cao, Y-R, Wang, Q., Jin, R-X., Tang, S-K., He, W-X., Lai, H-X, Xu, L-H., and C-L Jiang. 2011.  Methylobacterium soli  sp. nov. a methanol-utilizing bacterium isolated from the forest soil. Antonie van Leeuwenhoek (2011) 99:629-634. 
         4. Corpe, W. A., and D. V. Basile. 1982. Methanol-utilizing bacteria associated with green plants. Devel. Industr. Microbiol. 23: 483-493. 
         5. Corpe, W. A., and S. Rheem. 1989. Ecology of the methylotrophic bacteria on living leaf surfaces. FEMS Microbiol. Ecol. 62: 243-250. 
         6. Green, P. N. 2005.  Methylobacterium . In Brenner, D. J., N. R. Krieg, and J. T. Staley (eds.). “Bergey&#39;s Manual of Systematic Bacteriology. Volume two, The Proteobacteria. Part C, The alpha-, beta-, delta-, and epsilonproteobacteria.” Second edition. Springer, New York. Pages 567-571. 
         7. Green, P. N. 2006.  Methylobacterium . In Dworkin, M., S. Falkow, E. Rosenberg, K.-H. Schleifer, and E. Stackebrandt (eds.). “The Prokaryotes. A Handbook on the Biology of Bacteria. Volume 5. Proteobacteria: Alpha and Beta Subclasses.” Third edition. Springer, New York. Pages 257-265. 
         8. Holland, M. A. 1997.  Methylobacterium  and plants. Recent. Res. Devel. in Plant Physiol. 1: 207-213. 
         9. Holland, M. A., and J. C. Polacco. 1994. PPFMs and other covert contaminants: Is there more to plant physiology than just plant? Annu. Rev. Plant Physiol. Plant Mol. Biol. 45: 197-209. 
         10. Kutschera, U. 2007. Plant-associated methylobacteria as co-evolved phytosymbionts. A hypothesis. Plant Signal Behav. 2: 74-78. 
         11. Lidstrom, M. E. 2006. Aerobic methylotrophic prokaryotes. In Dworkin, M., S. Falkow, E. Rosenberg, K.-H. Schleifer, and E. Stackebrandt (eds.). “The Prokaryotes. A Handbook on the Biology of Bacteria. Volume 2. Ecophysiology and biochemistry.” Third edition. Springer, New York. Pages 618-634. 
         12. Madhaiyan, M., S. Poonguzhali, H. S. Lee, K. Hari, S. P. Sundaram, and T. M. Sa. 2005. Pink-pigmented facultative methylotrophic bacteria accelerate germination, growth and yield of sugarcane clone Co86032 ( Saccharum officinarum  L.) Biol. Fertil. Soils 41: 350-358. 
         13. Madhaiyan, M., S. Poonguzhali, M. Senthilkumar, S. Seshadri, H. Chung, J. Yang, S. Sundaram, and T. Sa. 2004. Growth promotion and induction of systemic resistance in rice cultivar C0-47 ( Oryza sativa  L.) by  Methylobacterium  spp. Bot. Bull. Acad. Sin. 45: 315-324. 
         14. Madhaiyan, M., S. Poonguzhali, and T. Sa. 2007. Influence of plant species and environmental conditions on epiphytic and endophytic pink-pigmented facultative methylotrophic bacterial populations associated with field-grown rice cultivars. J Microbiol Biotechnol. 2007 October; 17(10):1645-54. 
         15. Stanier, R. Y., N. J. Palleroni, and M. Doudoroff. 1966. The aerobic pseudomonads: A taxonomic study. J. Gen. Microbiol. 43: 159-271. 
         16. Sy, A., Giraud, E., Jourand, P., Garcia, N., Willems, A., De Lajudie, P., Prin, Y., Neyra, M., Gillis, M., Boivin-Masson, C., and Dreyfus, B. 2001. Methylotrophic  Methylobacterium  Bacteria Nodulate and Fix Nitrogen in Symbiosis with Legumes. Jour. Bacteriol. 183(1):214-220, 
         17. Sy, A., A. C. J. Timmers, C. Knief, and J. A. Vorholt. 2005. Methylotrophic metabolism is advantageous for  Methylobacterium extorquens  during colonization of  Medicago truncatula  under competitive conditions. Appl. Environ. Microbiol. 71: 7245-7252. 
         18. Vogel, H. J., and D. M. Bonner. 1956. Acetylornithinase of  Escherichia coli : Partial purification and some properties. J. Biol. Chem. 218: 97-106. 
         19. Vogel, H. J. 1956. A convenient growth medium for  Neurospora  (Medium N). Microbial Genet Bull 13: 42-43 
         20. Whittenbury, R., S. L. Davies, and J. F. Wilkinson. 1970. Enrichment, isolation and some properties of methane-utilizing bacteria. J. Gen. Microbiol. 61: 205-218. 
         21. Vuilleumier S, Chistoserdova L, Lee M C, Bringel F, Lajus A, Zhou Y, Gourion B, Barbe V, Chang J, Cruveiller S, Dossat C, Gillett W, Gruffaz C, Haugen E, Hourcade E, Levy R, Mangenot S, Muller E, Nadalig T, Pagni M, Penny C, Peyraud R, Robinson D G, Roche D, Rouy Z, Saenampechek C, Salvignol G, Vallenet D, Wu Z, Marx C J, Vorholt J A, Olson M V, Kaul R, Weissenbach J, Medigue C, Lidstrom M E.  Methylobacterium  genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources. PLoS One. 2009; 4(5):e5584. doi: 10.1371/journal.pone.0005584. Epub 2009 May 18. PubMed PMID: 19440302; PubMed Central PMCID: PMC2680597. 
         22. Marx C J, Bringel F, Chistoserdova L, Moulin L, Farhan Ul Haque M, Fleischman D E, Gruffaz C, Jourand P, Knief C, Lee M C, Muller E E, Nadalig T, Peyraud R, Roselli S, Russ L, Goodwin L A, Ivanova N, Kyrpides N, Lajus A, Land M L, Médigue C, Mikhailova N, Nolan M, Woyke T, Stolyar S, Vorholt J A, Vuilleumier S. Complete genome sequences of six strains of the genus  Methylobacterium . J Bacteriol. 2012 September; 194(17):4746-8. doi: 10.1128/JB.01009-12. PubMed PMID: 22887658; PubMed Central PMCID: PMC3415506. 
         23. Knief C, Frances L, Vorholt J A. Competitiveness of diverse  Methylobacterium  strains in the phyllosphere of  Arabidopsis thaliana  and identification of representative models, including  M. extorquens  PA1. Microb Ecol. 2010 August; 60(2):440-52. doi: 10.1007/s00248-010-9725-3. Epub 2010 Aug. 11. PubMed PMID: 20700590. 
       
    
     Example 6. Seed Inoculation of ‘Rex’ Lettuce with PPFMs Increases Shoot and Root Biomass 
     Seeding 
     A 276 cell sheet of Oasis HORTICUBES® (1-inch Thin-Cut; Smithers-Oasis North America, Kent, Ohio, USA) was placed into a 1020 mesh flat. The flat was divided in half with a piece of plastic to allow for two groups per flat. The Oasis HORTICUBES® were watered to full saturation. Rex lettuce seed was used. One seed was placed in each cell for a total of 132 or 144 seeds per group. 
     Inoculation of Lettuce Seeds 
     The PPFM strains to be tested were grown as described in Example 1 in a liquid medium supplemented with diatomaceous earth at 2 grams/liter. At the bench, the desired amount of PPFM solution was pipetted into conical tubes (making sure to swirl/shake bottle vigorously before pipetting to suspend particulates). A centrifuge was used to pellet the cells at 7500 RPM for 5 minutes at 23° C. The supernatant was discarded, and the PPFM pellets were resuspended in an equal volume of water. 
     100 microliters of solution (PPFM solution for treated groups and tap water for control groups) were pipetted onto the top of each seed. The tube was shaken periodically to keep the PPFM cells in suspension. Clear humidity domes were placed over each flat. The flats were placed in a greenhouse with temperature settings of 30° C. during the day, 28° C. at night and with a 16-hour day length attained with using supplemental light as necessary. 
     Growth 
     After two to three days after planting, the seeds had germinated, and the humidity domes were removed. The flats were top watered and fertilized with Jack&#39;s™ 15-16-17 (JR PETERS, Inc. Allentown, Pa., USA) at every watering. Daily repositioning of the flats was carried out to prevent potential effects on growth due to variations of light conditions in the growth chamber. 
     Processing 
     The lettuce seedlings were harvested at 10 days after planting. Each plant was cut directly below the cotyledons and immediately weighed on an analytical balance. 
     Observations 
     It was observed that some strains repeatedly showed an increase in shoot biomass of the lettuce seedlings following seed treatment. Visual observations of root mass and development were also made, and it was noted that treated groups showed more growth at the time of harvest. The outside row of each group was not harvested in order to eliminate any edge effects in the flats. The results are as shown in the following Table. 
     
       
         
           
               
               
               
               
             
               
                   
                 TABLE 5 
               
               
                   
                   
               
               
                   
                   
                 avg % Increase in 
                   
               
               
                   
                   
                 Shoot Biomass in 
               
               
                   
                 Strain 
                 comparison to control 
                 # of tests 
               
               
                   
                   
               
             
            
               
                   
               
            
           
           
               
               
               
               
            
               
                   
                 NLS0062 
                 44.00% 
                 3 
               
               
                   
                 NLS0020 
                 37.73% 
                 3 
               
               
                   
                 NLS0042 
                 33.82% 
                 4 
               
               
                   
                 NLS0046 
                 30.86% 
                 3 
               
               
                   
                 NLS0068 
                 30.83% 
                 3 
               
               
                   
                 NLS0038 
                 29.43% 
                 3 
               
               
                   
                 NLS0089 
                 29.16% 
                 3 
               
               
                   
                 NLS0017 
                 28.53% 
                 5 
               
               
                   
                 NLS0021 
                 28.27% 
                 3 
               
               
                   
                 NLS0037 
                 26.02% 
                 3 
               
               
                   
                 NLS0066 
                 25.63% 
                 3 
               
               
                   
                 NLS0065 
                 23.35% 
                 3 
               
               
                   
                 NLS0064 
                 21.88% 
                 3 
               
               
                   
                 NLS0069 
                 4.87% 
                 3 
               
               
                   
                   
               
            
           
         
       
     
     Conclusion 
     It was apparent that PPFM strains NLS0017, NLS0020, NLS21, NLS0037, NLS0038, NLS42, NLS46, NLS62, NLS64, NLS0065, NLS0066, NLS0068, and NLS0089 showed a reproducible and statistically significant increase in the wet weight of lettuce seedlings following seed treatment. Also noted along with an increase in shoot biomass was a corresponding increase in root development. 
     Example 7. Flandria Seed Tests 
     Flandria lettuce seed were treated with the indicated PPFM isolates essentially as described in Example 5 to yield the following results. 
     
       
         
           
               
               
               
             
               
                   
                 TABLE 6 
               
             
            
               
                   
                   
               
               
                   
                 wet weight (mg) 
                   
               
            
           
           
               
               
               
               
               
               
            
               
                   
                 strain 
                 control 
                 experimental 
                 difference 
                 CI 
               
               
                   
                   
               
            
           
           
               
               
               
               
               
               
            
               
                   
                 NLS0017 
                 103.38 
                 152.14 
                 47.16% 
                 0.000 
               
               
                   
                 NLS0017 
                 90.98 
                 174.23 
                 91.51% 
                 0.000 
               
               
                   
                 NLS0017 
                 45.47 
                 80.74 
                 77.57% 
                 0.000 
               
               
                   
                 NLS0017 
                 101.46 
                 174.29 
                 71.78% 
                 0.000 
               
               
                   
                 NLS0017 
                 265.34 
                 296.75 
                 11.84% 
                 0.000 
               
               
                   
                 NLS0017 
                 99.82 
                 163.01 
                 63.30% 
                 0.000 
               
               
                   
                 NLS0020 
                 103.38 
                 123.00 
                 18.98% 
                 0.000 
               
               
                   
                 NLS0020 
                 90.98 
                 174.92 
                 92.27% 
                 0.000 
               
               
                   
                 NLS0020 
                 45.47 
                 72.21 
                 58.80% 
                 0.000 
               
               
                   
                 NLS0020 
                 41.85 
                 62.27 
                 48.79% 
                 0.000 
               
               
                   
                 NLS0020 
                 195.98 
                 232.44 
                 18.60% 
                 0.000 
               
               
                   
                 NLS0020 
                 89.68 
                 121.69 
                 35.68% 
                 0.000 
               
               
                   
                 NLS0020 
                 136.75 
                 171.62 
                 25.50% 
                 0.000 
               
               
                   
                 NLS0020 
                 69.18 
                 141.55 
                 104.59%  
                 0.000 
               
               
                   
                 NLS0020 
                 38.38 
                 63.65 
                 65.84% 
                 0.000 
               
               
                   
                 NLS0020 
                 49.53 
                 85.78 
                 73.18% 
                 0.000 
               
               
                   
                 NLS0037 
                 59.84 
                 109.56 
                 83.10% 
                 0.000 
               
               
                   
                 NLS0037 
                 183.18 
                 199.05 
                  8.67% 
                 0.008 
               
               
                   
                 NLS0037 
                 68.26 
                 136.58 
                 100.08%  
                 0.000 
               
               
                   
                 NLS0037 
                 97.72 
                 156.97 
                 60.63% 
                 0.000 
               
               
                   
                 NLS0037 
                 91.74 
                 130.58 
                 42.34% 
                 0.000 
               
               
                   
                 NLS0037 
                 99.08 
                 108.96 
                  9.97% 
                 0.030 
               
               
                   
                 NLS0037 
                 61.72 
                 120.61 
                 95.41% 
                 0.000 
               
               
                   
                 NLS0042 
                 59.84 
                 110.04 
                 83.90% 
                 0.000 
               
               
                   
                 NLS0042 
                 183.18 
                 184.47 
                  0.70% 
                 0.650 
               
               
                   
                 NLS0042 
                 68.26 
                 99.76 
                 46.15% 
                 0.000 
               
               
                   
                 NLS0042 
                 61.72 
                 109.42 
                 77.28% 
                 0.000 
               
               
                   
                 NLS0065 
                 140.95 
                 211.13 
                 49.80% 
                 0.000 
               
               
                   
                 NLS0065 
                 61.72 
                 109.38 
                 77.22% 
                 0.000 
               
               
                   
                 NLS0065 
                 86.75 
                 154.51 
                 78.11% 
                 0.000 
               
               
                   
                 NLS0065 
                 97.67 
                 99.42 
                  1.79% 
                 0.691 
               
               
                   
                 NLS0066 
                 103.38 
                 180.71 
                 74.80% 
                 0.000 
               
               
                   
                 NLS0066 
                 90.98 
                 163.37 
                 79.57% 
                 0.000 
               
               
                   
                 NLS0066 
                 45.47 
                 96.07 
                 111.28%  
                 0.000 
               
               
                   
                 NLS0066 
                 91.32 
                 114.02 
                 24.86% 
                 0.000 
               
               
                   
                 NLS0066 
                 209.04 
                 279.74 
                 33.83% 
                 0.000 
               
               
                   
                 NLS0066 
                 99.82 
                 101.20 
                  1.38% 
                 0.920 
               
               
                   
                 NLS0135 
                 223.15 
                 227.21 
                  1.82% 
                 0.588 
               
               
                   
                 NLS0135 
                 90.94 
                 111.89 
                   23% 
                 0.000 
               
               
                   
                 NLS0135 
                 145.2 
                 118.14 
                     −19% 
                 0.000 
               
               
                   
                 NLS0071 
                 223.15 
                 220.13 
                 −1.35% 
                 0.716 
               
               
                   
                 NLS0071 
                 90.94 
                 107.2 
                   18% 
                 0.000 
               
               
                   
                 NLS0071 
                 145.2 
                 129.62 
                     −11% 
                 0.002 
               
               
                   
                 NLS0109 
                 223.15 
                 215.45 
                 −3.45% 
                 0.316 
               
               
                   
                 NLS0109 
                 90.94 
                 109.91 
                   21% 
                 0.000 
               
               
                   
                 NLS0109 
                 145.2 
                 126.9 
                     −13% 
                 0.001 
               
               
                   
                 NLS0142 
                 223.15 
                 197.98 
                 −11.28%  
                 0.002 
               
               
                   
                 NLS0142 
                 90.94 
                 94.89 
                    4% 
                 0.324 
               
               
                   
                 NLS0142 
                 145.2 
                 121.09 
                     −17% 
                 0.000 
               
               
                   
                   
               
            
           
         
       
     
     It was evident that the PPFM strains NLS0017, NLS0037, NLS0066, NLS0020, NLS0042, NLS0065, NLS0089, NLS0046, NLS0021. NLS0069, NLS0068, NLS0064, NLS0062, and NLS0038 could provide for increased lettuce biomass relative to control treatments. 
     Example 8. Identification of Orthologous Genes Present in  Methylobacterium  sp. that can Improve Lettuce Production 
     The PPFM strains listed in Table 1 were grown on solid agar media comprising Ammonium Mineral Salts (AMS) plus glycerol and peptone at 30° C. for 5 days, essentially as described in co-assigned U.S. Patent Application Publication No. US20130324407 and incorporated herein by reference in its entirety. Genomic DNA was extracted using MO-BIO (Carlsbad, Calif.) Ultra Clean Microbial DNA Isolation kit, and 1 μg of high quality DNA was used for Illumina Nextera XT library preparation followed by Illumina 2×100 paired-end sequencing on a HiSeq2000 system. Raw Illumina genomic sequence data were subjected to adaptor- and quality-based trimming for quality control. Whole-genome Shotgun Sequence Assembly was achieved by assembling quality-passed data using the de novo assembler SPADES (33). For gene finding and annotation, reference training data was leveraged from TIGRFAM (9), Pfam, COG (10), and UniRef100 (11). The rRNAs were identified with RNAmmer (5), protein-coding genes were identified with Glimmer (3) and Maker (6), and tRNAs were identified with tRNAscan-SE (4). Gene functions were assigned with blastx (7), blastp (7), HMMER (8), and InterProScan against comprehensive protein databases described above (Reference Data). Detection of polymorphisms (SNP or other DNA variations occurring as a result of insertions, deletions, and substitutions (Indels)) in the  Methylobacterium  sp. isolates was performed with BWA (12) and the Samtools suite (on the internet at samtools.sourceforge.net/) and the Genome Analysis Toolkit (GATK, on the world wide web internet site “broadinstitute.org/gatk/”), structural variation was identified with BreakDancer (on the internet at breakdancer.sourceforge.net/) and CoGE (on the internet at genomevolution.org/CoGe/). 
     Genes that encoded open reading frames were predicted from the assembled whole genomic sequences of NLS0017, NLS0020, NLS0037, NLS0042, NLS0065, NLS0066, NLS0135, NLS0071, NLS0109, and NLS0142 essentially as described above. Within and between genome orthologous genes were clustered using OrthoMCL (available on the world wide web internet site “orthomcl.org/orthomcl/”). Putative functional annotations were assigned to gene products using BLASTP (available on the internet site “blast.ncbi.nlm.nih.gov/Blast.cgi”) against the UniProt database (available on the world wide web internet site “uniprot.org/”). Genes present in individual genomes of NLS0017, NLS0020, NLS0037, NLS0042, NLS0065, and NLS0066 that could improve lettuce production (as shown in Example 7) but absent in the whole set of genomes of NLS0135, NLS0071, NLS0109, and NLS0142 that did not improve lettuce production (as shown in Example 7) were identified in OrthoMCL clusters using custom software. The encoded proteins found in the  Methylobacterium  NLS0017, NLS0020, NLS0037, NLS0042, NLS0065, and NLS0066 that could improve lettuce production are provided in the sequencing listing as SEQ ID NO: 1-5125. The nucleic acid sequences that encode the proteins of SEQ ID NO: 1-5125 are SEQ ID NO: 5126-10250, respectively. The proteins encoded by genes present in NLS0017 but absent from NLS0135, NLS0071, NLS0109, and NLS0142 are provided as SEQ ID NO: 1-1086. The proteins encoded by genes present in NLS0020 but absent from NLS0135, NLS0071, NLS0109, and NLS0142 are provided as SEQ ID NO: 1087-2176. The proteins encoded by genes present in NLS0037 but absent from NLS0135, NLS0071, NLS0109, and NLS0142 are provided as SEQ ID NO: 2177-2461. The proteins encoded by genes present in NLS0042 but absent from NLS0135, NLS0071, NLS0109, and NLS0142 are provided as SEQ ID NO: 2462-3347. The proteins encoded by genes present in NLS0065 but absent from NLS0135, NLS0071, NLS0109, and NLS0142 are provided as SEQ ID NO: 3348-3949. The proteins encoded by genes present in NLS0066 but absent from NLS0135, NLS0071, NLS0109, and NLS0142 are provided as SEQ ID NO: 3950-5125. Orthologous gene groups representing genes encoding proteins found in the genomes of at least two individual genomes of NLS0017, NLS0020, NLS0037, NLS0042, NLS0065, and/or NLS0066 that could improve lettuce production (as shown in Example 7) but that are absent in the whole set of genomes of NLS0135, NLS0071, NLS0109, and NLS0142 that did not improve lettuce production are provided in Table 7. In Table 7, groups of orthologous genes are provided in each row, where the longest sequence and associated unique Seq ID Number are designated as a reference sequence to represent the ortholog cluster (Column 3 of Table 7). The ortholog group identification number is provided in column 1 of Table 7, the closest gene identity based on database comparisons is provided in column 2 of Table 7, and the reference sequence for each ortholog cluster is provided in column 3 of Table 7. Examples of ortholog sequences found in NLS0017, NLS0020, NLS0037, NLS0042, NLS0065, and NLS0066 are provided as SEQ ID NO: in Table 7, columns 4, 5, 6, 7, 8, and 9, respectively. 
     
       
         
           
               
             
               
                 TABLE 7 
               
             
            
               
                   
               
               
                 Orthologous Gene Groups 
               
            
           
           
               
               
               
               
               
               
               
               
               
            
               
                   
                   
                 Reference. 
                 NLS0017 
                 NLS0020 
                 NLS0037 
                 NLS0042 
                 NLS0065 
                 NLS0066 
               
               
                 Unique 
                   
                 Ortholog 
                 Ortholog 
                 Ortholog 
                 Ortholog 
                 Ortholog 
                 Ortholog 
                 Ortholog 
               
               
                 Ortholog Group 
                   
                 SEQ ID 
                 SEQ ID 
                 SEQ ID 
                 SEQ ID 
                 SEQ ID 
                 SEQ ID 
                 SEQ ID 
               
               
                 Identifier 
                 Annotation 
                 NO: 
                 NO: 
                 NO: 
                 NO: 
                 NO: 
                 NO: 
                 NO: 
               
               
                   
               
            
           
           
               
               
               
               
               
               
               
               
               
            
               
                 4678v20141116 
                 hypothetical protein 
                 2467 
                 8 
                 1091 
                 NA 
                 2467 
                 3352 
                 3954 
               
               
                   
                 Mpop_4447 
               
               
                 4682v20141116 
                 hypothetical protein 
                 2468 
                 9 
                 1092 
                 NA 
                 2468 
                 3353 
                 3955 
               
               
                   
                 Mchl_0132 
               
               
                 4747v20141116 
                 histidine kinase 
                 3357 
                 11 
                 1093 
                 NA 
                 2472 
                 3357 
                 3959 
               
               
                 4748v20141116 
                 transcriptional 
                 1094 
                 12 
                 1094 
                 NA 
                 2473 
                 3358 
                 3960 
               
               
                   
                 regulator 
               
               
                 4749v20141116 
                 histidine kinase 
                 13 
                 13 
                 1095 
                 NA 
                 2474 
                 3359 
                 3961 
               
               
                 4809v20141116 
                 saccharopine 
                 14 
                 14 
                 1097 
                 NA 
                 2481 
                 3365 
                 3966 
               
               
                   
                 dehydrogenase 
               
               
                 4837v20141116 
                 ABC transporter-like 
                 1100 
                 17 
                 1100 
                 2179 
                 2484 
                 3367 
                 NA 
               
               
                   
                 protein 
               
               
                 4841v20141116 
                 hypothetical protein 
                 3968 
                 19 
                 1102 
                 NA 
                 2486 
                 3368 
                 3968 
               
               
                   
                 Mpop_0734 
               
               
                 4904v20141116 
                 HlyD family type I 
                 3370 
                 22 
                 1103 
                 NA 
                 2491 
                 3370 
                 3972 
               
               
                   
                 secretion membrane 
               
               
                   
                 fusion protein 
               
               
                 4905v20141116 
                 Transcriptional 
                 23 
                 23 
                 1104 
                 NA 
                 2492 
                 3371 
                 3973 
               
               
                   
                 regulator XRE family 
               
               
                 4942v20141116 
                 type I secretion system 
                 1106 
                 25 
                 1106 
                 NA 
                 2494 
                 3373 
                 3974 
               
               
                   
                 ATPase 
               
               
                 3799v20141116 
                 hypothetical protein 
                 3950 
                 1 
                 1088 
                 NA 
                 2462 
                 NA 
                 3950 
               
               
                 4369v20141116 
                 hypothetical protein 
                 3952 
                 6 
                 1090 
                 2177 
                 NA 
                 NA 
                 3952 
               
               
                   
                 METDI0048 
               
               
                 4454v20141116 
                 FAD-dependent 
                 2463 
                 7 
                 NA 
                 2178 
                 2463 
                 3348 
                 NA 
               
               
                   
                 pyridine nucleotide- 
               
               
                   
                 disulfide 
               
               
                   
                 oxidoreductase 
               
               
                 4740v20141116 
                 arsenite efflux pump 
                 2471 
                 10 
                 NA 
                 NA 
                 2471 
                 3356 
                 3958 
               
               
                   
                 ACR3 
               
               
                 4926v20141116 
                 LysR family 
                 3372 
                 24 
                 1105 
                 NA 
                 2493 
                 3372 
                 NA 
               
               
                   
                 transcriptional 
               
               
                   
                 regulator 
               
               
                 4948v20141116 
                 hypothetical protein 
                 2180 
                 26 
                 NA 
                 2180 
                 2495 
                 3374 
                 NA 
               
               
                   
                 Mchl_1383 
               
               
                 5012v20141116 
                 COG3293: Transposase 
                 27 
                 27 
                 1107 
                 NA 
                 2500 
                 3377 
                 NA 
               
               
                   
                 and inactivated 
               
               
                   
                 derivatives 
               
               
                 5041v20141116 
                 hypothetical protein 
                 28 
                 28 
                 1108 
                 NA 
                 2502 
                 3378 
                 NA 
               
               
                 5096v20141116 
                 hypothetical protein 
                 30 
                 30 
                 1109 
                 NA 
                 2504 
                 3380 
                 NA 
               
               
                 5122v20141116 
                 hypothetical protein 
                 2510 
                 31 
                 1110 
                 NA 
                 2510 
                 3385 
                 NA 
               
               
                   
                 Mchl_3038 
               
               
                 5202v20141116 
                 hypothetical protein 
                 2515 
                 33 
                 1113 
                 NA 
                 2515 
                 3387 
                 NA 
               
               
                   
                 Mext_4122 
               
               
                 5212v20141116 
                 hypothetical protein 
                 1114 
                 35 
                 1114 
                 NA 
                 2516 
                 3388 
                 NA 
               
               
                 5238v20141116 
                 OmpA/MotB domain- 
                 3987 
                 36 
                 1115 
                 NA 
                 NA 
                 3392 
                 3987 
               
               
                   
                 containing protein 
               
               
                 5246v20141116 
                 multidrug transporter 
                 1116 
                 37 
                 1116 
                 2182 
                 2521 
                 NA 
                 NA 
               
               
                   
                 MatE 
               
               
                 5258v20141116 
                 hypothetical protein 
                 1117 
                 38 
                 1117 
                 NA 
                 2522 
                 3393 
                 NA 
               
               
                 5263v20141116 
                 porin 
                 3394 
                 39 
                 1118 
                 NA 
                 2523 
                 3394 
                 NA 
               
               
                 5363v20141116 
                 hypothetical protein 
                 40 
                 40 
                 1119 
                 NA 
                 2533 
                 3401 
                 NA 
               
               
                 5374v20141116 
                 cytochrome P450 
                 1120 
                 41 
                 1120 
                 NA 
                 2534 
                 NA 
                 3992 
               
               
                 5433v20141116 
                 peptidase C14 
                 3996 
                 42 
                 1121 
                 NA 
                 NA 
                 3412 
                 3996 
               
               
                 5434v20141116 
                 hypothetical protein 
                 43 
                 43 
                 1122 
                 NA 
                 NA 
                 3413 
                 3997 
               
               
                 5497v20141116 
                 ATPase 
                 44 
                 44 
                 NA 
                 NA 
                 2561 
                 3425 
                 4003 
               
               
                 5506v20141116 
                 hypothetical protein 
                 4004 
                 45 
                 1123 
                 NA 
                 NA 
                 3426 
                 4004 
               
               
                 5507v20141116 
                 hypothetical protein 
                 3427 
                 46 
                 1124 
                 NA 
                 NA 
                 3427 
                 4005 
               
               
                 5508v20141116 
                 hypothetical protein 
                 4006 
                 47 
                 1125 
                 NA 
                 NA 
                 3428 
                 4006 
               
               
                   
                 Mpop_0725 
               
               
                 5509v20141116 
                 hypothetical protein 
                 3429 
                 48 
                 1126 
                 NA 
                 NA 
                 3429 
                 4007 
               
               
                 5510v20141116 
                 hypothetical protein 
                 3430 
                 49 
                 1127 
                 NA 
                 NA 
                 3430 
                 4008 
               
               
                 5585v20141116 
                 hypothetical protein 
                 51 
                 51 
                 1128 
                 NA 
                 NA 
                 3443 
                 4012 
               
               
                   
                 Mpop_0722 
               
               
                 5586v20141116 
                 hypothetical protein 
                 52 
                 52 
                 1129 
                 NA 
                 NA 
                 3444 
                 4013 
               
               
                   
                 Mpop_0723 
               
               
                 5790v20141116 
                 hypothetical protein 
                 57 
                 57 
                 1134 
                 NA 
                 2619 
                 3476 
                 NA 
               
               
                 5984v20141116 
                 Penicillin-binding 
                 2676 
                 60 
                 1136 
                 NA 
                 2676 
                 3502 
                 NA 
               
               
                   
                 protein 
               
               
                 6022v20141116 
                 plasmid stabilization 
                 2190 
                 NA 
                 1139 
                 2190 
                 2680 
                 NA 
                 4021 
               
               
                   
                 protein ParE 
               
               
                 6819v20141116 
                 short-chain 
                 76 
                 76 
                 1155 
                 2201 
                 NA 
                 3542 
                 NA 
               
               
                   
                 dehydrogenase 
               
               
                 7006v20141116 
                 binding-protein- 
                 4067 
                 84 
                 1163 
                 NA 
                 2796 
                 NA 
                 4067 
               
               
                   
                 dependent transport 
               
               
                   
                 system inner 
               
               
                   
                 membrane protein 
               
               
                 7040v20141116 
                 hypothetical protein 
                 85 
                 85 
                 1164 
                 NA 
                 2799 
                 NA 
                 4069 
               
               
                 7299v20141116 
                 glycosyltransferase 
                 1180 
                 105 
                 1180 
                 2206 
                 NA 
                 NA 
                 4087 
               
               
                   
                 family 2 
               
               
                 7707v20141116 
                 metal-dependent 
                 127 
                 127 
                 1203 
                 2214 
                 NA 
                 NA 
                 4111 
               
               
                   
                 phosphohydrolase 
               
               
                 8313v20141116 
                 GDP-L-fucose synthase 
                 197 
                 197 
                 1264 
                 2237 
                 NA 
                 NA 
                 4171 
               
               
                 8314v20141116 
                 NAD-dependent 
                 198 
                 198 
                 1265 
                 2238 
                 NA 
                 NA 
                 4172 
               
               
                   
                 epimerase/dehydratase 
               
               
                 8315v20141116 
                 NAD-dependent 
                 199 
                 199 
                 1266 
                 2239 
                 NA 
                 NA 
                 4173 
               
               
                   
                 epimerase/dehydratase 
               
               
                 8898v20141116 
                 Transcriptional 
                 2971 
                 250 
                 1309 
                 2263 
                 2971 
                 NA 
                 NA 
               
               
                   
                 regulator LysR family 
               
               
                 4353v20141116 
                 transposase partial 
                 5 
                 5 
                 1089 
                 NA 
                 NA 
                 NA 
                 3951 
               
               
                 4597v20141116 
                 peroxiredoxin 
                 2464 
                 NA 
                 NA 
                 NA 
                 2464 
                 3350 
                 3953 
               
               
                 4733v20141116 
                 acyl-CoA 
                 3956 
                 NA 
                 NA 
                 NA 
                 2469 
                 3354 
                 3956 
               
               
                   
                 dehydrogenase type 2 
               
               
                   
                 domain 
               
               
                 4734v20141116 
                 ABC transporter 
                 3355 
                 NA 
                 NA 
                 NA 
                 2470 
                 3355 
                 3957 
               
               
                 4782v20141116 
                 ABC transporter inner 
                 2475 
                 NA 
                 NA 
                 NA 
                 2475 
                 3360 
                 3962 
               
               
                   
                 membrane protein 
               
               
                 4783v20141116 
                 twin-arginine 
                 2476 
                 NA 
                 NA 
                 NA 
                 2476 
                 3361 
                 3963 
               
               
                   
                 translocation pathway 
               
               
                   
                 signal 
               
               
                 4792v20141116 
                 COG3293: Transposase 
                 1096 
                 NA 
                 1096 
                 NA 
                 2477 
                 3362 
                 NA 
               
               
                   
                 and inactivated 
               
               
                   
                 derivatives 
               
               
                 4797v20141116 
                 hypothetical protein 
                 3364 
                 NA 
                 NA 
                 NA 
                 2480 
                 3364 
                 3964 
               
               
                   
                 METDI2339 
               
               
                 4829v20141116 
                 diguanylate cyclase 
                 3366 
                 NA 
                 NA 
                 NA 
                 2482 
                 3366 
                 3967 
               
               
                 4831v20141116 
                 Hypothetical protein 
                 16 
                 16 
                 1098 
                 NA 
                 2483 
                 NA 
                 NA 
               
               
                 4839v20141116 
                 hypothetical protein 
                 2485 
                 18 
                 1101 
                 NA 
                 2485 
                 NA 
                 NA 
               
               
                 4901v20141116 
                 OmpW family protein 
                 3971 
                 NA 
                 NA 
                 NA 
                 2490 
                 3369 
                 3971 
               
               
                 5103v20141116 
                 hypothetical protein 
                 3381 
                 NA 
                 NA 
                 NA 
                 2506 
                 3381 
                 3977 
               
               
                   
                 METDI2906 
               
               
                 5118v20141116 
                 aminoglycoside 
                 2508 
                 NA 
                 NA 
                 NA 
                 2508 
                 3383 
                 3978 
               
               
                   
                 phosphotransferase 
               
               
                 5144v20141116 
                 hypothetical protein 
                 1111 
                 NA 
                 1111 
                 2181 
                 NA 
                 NA 
                 3980 
               
               
                 5183v20141116 
                 ABC transporter 
                 2513 
                 32 
                 1112 
                 NA 
                 2513 
                 NA 
                 NA 
               
               
                 5217v20141116 
                 hemolysin 
                 2517 
                 NA 
                 NA 
                 NA 
                 2517 
                 3389 
                 3985 
               
               
                 5283v20141116 
                 BadM/Rrf2 family 
                 3988 
                 NA 
                 NA 
                 NA 
                 2525 
                 3396 
                 3988 
               
               
                   
                 transcriptional 
               
               
                   
                 regulator 
               
               
                 5391v20141116 
                 5′-nucleotidase 
                 2543 
                 NA 
                 NA 
                 NA 
                 2543 
                 3407 
                 3994 
               
               
                 5420v20141116 
                 virulence-associated 
                 3411 
                 NA 
                 NA 
                 NA 
                 2547 
                 3411 
                 3995 
               
               
                   
                 protein D 
               
               
                 5471v20141116 
                 hypothetical protein 
                 3416 
                 NA 
                 NA 
                 NA 
                 2550 
                 3416 
                 3998 
               
               
                   
                 Mpop_1169 
               
               
                 5473v20141116 
                 hypothetical protein 
                 2551 
                 NA 
                 NA 
                 NA 
                 2551 
                 3417 
                 3999 
               
               
                   
                 Mpop_3884 
               
               
                 5487v20141116 
                 hypothetical protein 
                 2558 
                 NA 
                 NA 
                 NA 
                 2558 
                 3422 
                 4002 
               
               
                 5513v20141116 
                 hypothetical protein 
                 3431 
                 50 
                 NA 
                 NA 
                 2563 
                 3431 
                 NA 
               
               
                   
                 Mext_2210 
               
               
                 5566v20141116 
                 hypothetical protein 
                 4010 
                 NA 
                 NA 
                 NA 
                 2572 
                 3439 
                 4010 
               
               
                   
                 METDI0649 
               
               
                 5669v20141116 
                 hypothetical protein 
                 53 
                 53 
                 1130 
                 NA 
                 NA 
                 3458 
                 NA 
               
               
                 5675v20141116 
                 GreA/GreB family 
                 54 
                 54 
                 1131 
                 NA 
                 NA 
                 3460 
                 NA 
               
               
                   
                 elongation factor 
               
               
                 5683v20141116 
                 RND family efflux 
                 2590 
                 NA 
                 NA 
                 2183 
                 2590 
                 3462 
                 NA 
               
               
                   
                 transporter MFP 
               
               
                   
                 subunit 
               
               
                 5728v20141116 
                 permease of ABC 
                 2603 
                 NA 
                 NA 
                 2184 
                 2603 
                 NA 
                 4016 
               
               
                   
                 transporter 
               
               
                 5782v20141116 
                 hypothetical protein 
                 2617 
                 56 
                 NA 
                 NA 
                 2617 
                 3474 
                 NA 
               
               
                   
                 METDI1995 
               
               
                 5850v20141116 
                 hypothetical protein 
                 4018 
                 NA 
                 NA 
                 NA 
                 2631 
                 3485 
                 4018 
               
               
                 5911v20141116 
                 hypothetical protein 
                 2647 
                 NA 
                 NA 
                 NA 
                 2647 
                 3497 
                 4019 
               
               
                   
                 MexAM1_META1p1120 
               
               
                 5989v20141116 
                 hypothetical protein 
                 61 
                 61 
                 1137 
                 NA 
                 2677 
                 NA 
                 NA 
               
               
                 6009v20141116 
                 TetR family 
                 1138 
                 62 
                 1138 
                 NA 
                 2679 
                 NA 
                 NA 
               
               
                   
                 transcriptional 
               
               
                   
                 regulator 
               
               
                 6028v20141116 
                 UDP-glucose 6- 
                 63 
                 63 
                 1140 
                 NA 
                 NA 
                 3504 
                 NA 
               
               
                   
                 dehydrogenase 
               
               
                 6091v20141116 
                 DNA topoisomerase III 
                 64 
                 64 
                 1141 
                 NA 
                 NA 
                 NA 
                 4024 
               
               
                 6093v20141116 
                 Fe—S type 
                 65 
                 65 
                 1142 
                 NA 
                 NA 
                 NA 
                 4025 
               
               
                   
                 tartrate/fumarate 
               
               
                   
                 subfamily hydro-lyase 
               
               
                   
                 subunit alpha 
               
               
                 6183v20141116 
                 PAS/PAC sensor hybrid 
                 2697 
                 NA 
                 NA 
                 NA 
                 2697 
                 3513 
                 4028 
               
               
                   
                 histidine kinase 
               
               
                 6196v20141116 
                 hypothetical protein 
                 67 
                 67 
                 NA 
                 2191 
                 2700 
                 NA 
                 NA 
               
               
                 6235v20141116 
                 hypothetical protein 
                 1144 
                 70 
                 1144 
                 NA 
                 NA 
                 NA 
                 4031 
               
               
                 6301v20141116 
                 hypothetical protein 
                 2709 
                 NA 
                 NA 
                 NA 
                 2709 
                 3517 
                 4032 
               
               
                   
                 Mchl_1527 
               
               
                 6437v20141116 
                 Sel1 domain- 
                 3521 
                 72 
                 1146 
                 NA 
                 NA 
                 3521 
                 NA 
               
               
                   
                 containing protein 
               
               
                 6442v20141116 
                 fumarate hydratase 
                 2724 
                 73 
                 1147 
                 NA 
                 2724 
                 NA 
                 NA 
               
               
                 6618v20141116 
                 hypothetical protein 
                 2745 
                 NA 
                 NA 
                 2199 
                 2745 
                 NA 
                 4045 
               
               
                   
                 Mpop_4203 
               
               
                 6687v20141116 
                 peptide ABC 
                 75 
                 75 
                 1152 
                 NA 
                 NA 
                 3534 
                 NA 
               
               
                   
                 transporter substrate- 
               
               
                   
                 binding protein 
               
               
                 6785v20141116 
                 hydrolase alpha/beta 
                 2763 
                 NA 
                 NA 
                 NA 
                 2763 
                 3540 
                 4052 
               
               
                   
                 hydrolase fold family 
               
               
                   
                 protein 
               
               
                 6823v20141116 
                 thioesterase 
                 77 
                 77 
                 1157 
                 NA 
                 NA 
                 3543 
                 NA 
               
               
                   
                 superfamily protein 
               
               
                 7042v20141116 
                 arginine ABC 
                 86 
                 86 
                 1165 
                 NA 
                 NA 
                 NA 
                 4070 
               
               
                   
                 transporter ATP- 
               
               
                   
                 binding protein 
               
               
                 7043v20141116 
                 glyoxalase/bleomycin 
                 2800 
                 87 
                 1166 
                 NA 
                 2800 
                 NA 
                 NA 
               
               
                   
                 resistance 
               
               
                   
                 protein/dioxygenase 
               
               
                 7048v20141116 
                 glyoxalase 
                 89 
                 89 
                 1167 
                 NA 
                 NA 
                 NA 
                 4071 
               
               
                 7189v20141116 
                 hypothetical protein 
                 1172 
                 97 
                 1172 
                 NA 
                 NA 
                 NA 
                 4077 
               
               
                   
                 VOLCADRAFT_119358 
               
               
                 7290v20141116 
                 succinate 
                 4080 
                 98 
                 1173 
                 NA 
                 NA 
                 NA 
                 4080 
               
               
                   
                 dehydrogenase and 
               
               
                   
                 fumarate reductase 
               
               
                   
                 iron-sulfur protein 
               
               
                 7291v20141116 
                 succinate 
                 99 
                 99 
                 1174 
                 NA 
                 NA 
                 NA 
                 4081 
               
               
                   
                 dehydrogenase 
               
               
                   
                 membrane anchor 
               
               
                 7292v20141116 
                 succinate 
                 100 
                 100 
                 1175 
                 NA 
                 NA 
                 NA 
                 4082 
               
               
                   
                 dehydrogenase 
               
               
                   
                 cytochrome b subunit 
               
               
                 7293v20141116 
                 L(+)-tartrate or 
                 101 
                 101 
                 1176 
                 NA 
                 NA 
                 NA 
                 4083 
               
               
                   
                 fumarate dehydratase 
               
               
                   
                 subunit beta 
               
               
                 7294v20141116 
                 fumarate reductase 
                 102 
                 102 
                 1177 
                 NA 
                 NA 
                 NA 
                 4084 
               
               
                 7295v20141116 
                 YCII-like protein 
                 103 
                 103 
                 1178 
                 NA 
                 NA 
                 NA 
                 4085 
               
               
                 7297v20141116 
                 TRAP-type transport 
                 104 
                 104 
                 1179 
                 NA 
                 NA 
                 NA 
                 4086 
               
               
                   
                 system periplasmic 
               
               
                   
                 component-like 
               
               
                   
                 protein 
               
               
                 7310v20141116 
                 ABC transporter 
                 4088 
                 106 
                 1183 
                 NA 
                 NA 
                 NA 
                 4088 
               
               
                   
                 substrate-binding 
               
               
                   
                 protein 
               
               
                 7311v20141116 
                 glutathione ABC 
                 107 
                 107 
                 1184 
                 NA 
                 NA 
                 NA 
                 4089 
               
               
                   
                 transporter permease 
               
               
                   
                 GsiD 
               
               
                 7312v20141116 
                 oligopeptide/dipeptide 
                 1185 
                 108 
                 1185 
                 NA 
                 NA 
                 NA 
                 4090 
               
               
                   
                 ABC transporter 
               
               
                   
                 ATPase 
               
               
                 7313v20141116 
                 ABC transporter-like 
                 109 
                 109 
                 1186 
                 NA 
                 NA 
                 NA 
                 4091 
               
               
                   
                 protein 
               
               
                 7338v20141116 
                 acyl-CoA 
                 113 
                 113 
                 1188 
                 2208 
                 NA 
                 NA 
                 NA 
               
               
                   
                 dehydrogenase 
               
               
                   
                 domain-containing 
               
               
                   
                 protein 
               
               
                 7341v20141116 
                 hypothetical protein 
                 4094 
                 114 
                 1189 
                 NA 
                 NA 
                 NA 
                 4094 
               
               
                   
                 M446_1279 
               
               
                 7508v20141116 
                 hypothetical protein 
                 2856 
                 NA 
                 1193 
                 NA 
                 2856 
                 NA 
                 4104 
               
               
                 7536v20141116 
                 FAD-binding 
                 121 
                 121 
                 1194 
                 NA 
                 NA 
                 3583 
                 NA 
               
               
                   
                 monooxygenase 
               
               
                 7711v20141116 
                 2-hydroxyacid 
                 4112 
                 128 
                 1204 
                 NA 
                 NA 
                 NA 
                 4112 
               
               
                   
                 dehydrogenase 
               
               
                 7729v20141116 
                 amino acid ABC 
                 4113 
                 130 
                 1206 
                 NA 
                 NA 
                 NA 
                 4113 
               
               
                   
                 transporter 
               
               
                 7730v20141116 
                 GntR family 
                 131 
                 131 
                 1207 
                 NA 
                 NA 
                 NA 
                 4114 
               
               
                   
                 transcriptional 
               
               
                   
                 regulator 
               
               
                 7750v20141116 
                 alpha-amylase 
                 135 
                 135 
                 1209 
                 NA 
                 NA 
                 NA 
                 4115 
               
               
                 7844v20141116 
                 hypothetical protein 
                 139 
                 139 
                 1214 
                 NA 
                 2890 
                 NA 
                 NA 
               
               
                 7845v20141116 
                 FAD-dependent 
                 2216 
                 140 
                 1215 
                 2216 
                 NA 
                 NA 
                 NA 
               
               
                   
                 oxidoreductase 
               
               
                 7868v20141116 
                 hypothetical protein 
                 143 
                 143 
                 1217 
                 NA 
                 NA 
                 NA 
                 4126 
               
               
                 7877v20141116 
                 hypothetical protein 
                 4127 
                 145 
                 1220 
                 NA 
                 NA 
                 NA 
                 4127 
               
               
                   
                 Mchl_0532 
               
               
                 7885v20141116 
                 binding-protein- 
                 146 
                 146 
                 1221 
                 NA 
                 NA 
                 NA 
                 4128 
               
               
                   
                 dependent transport 
               
               
                   
                 system inner 
               
               
                   
                 membrane protein 
               
               
                 7890v20141116 
                 taurine ABC 
                 1223 
                 148 
                 1223 
                 NA 
                 NA 
                 NA 
                 4129 
               
               
                   
                 transporter permease 
               
               
                 7907v20141116 
                 regulator 
                 3602 
                 151 
                 1225 
                 NA 
                 NA 
                 3602 
                 NA 
               
               
                 7912v20141116 
                 Asp/Glu/hydantoin 
                 1226 
                 153 
                 1226 
                 2218 
                 NA 
                 NA 
                 NA 
               
               
                   
                 racemase 
               
               
                 7913v20141116 
                 D-lactate 
                 154 
                 154 
                 1227 
                 NA 
                 NA 
                 NA 
                 4130 
               
               
                   
                 dehydrogenase 
               
               
                 8031v20141116 
                 hypothetical protein 
                 155 
                 155 
                 1231 
                 2221 
                 NA 
                 NA 
                 NA 
               
               
                 8053v20141116 
                 acetyltransferase 
                 158 
                 158 
                 1234 
                 NA 
                 NA 
                 NA 
                 4143 
               
               
                 8056v20141116 
                 amidohydrolase 
                 159 
                 159 
                 1235 
                 2222 
                 NA 
                 NA 
                 NA 
               
               
                 8057v20141116 
                 ABC transporter 
                 160 
                 160 
                 1236 
                 2223 
                 NA 
                 NA 
                 NA 
               
               
                 8058v20141116 
                 ABC transporter 
                 161 
                 161 
                 1237 
                 2224 
                 NA 
                 NA 
                 NA 
               
               
                   
                 permease 
               
               
                 8059v20141116 
                 putative ABC 
                 162 
                 162 
                 1238 
                 2225 
                 NA 
                 NA 
                 NA 
               
               
                   
                 transporter 
               
               
                   
                 periplasmic substrate- 
               
               
                   
                 binding protein 
               
               
                 8080v20141116 
                 hypothetical protein 
                 163 
                 163 
                 1239 
                 NA 
                 NA 
                 NA 
                 4145 
               
               
                 8083v20141116 
                 N-ethylammeline 
                 164 
                 164 
                 1240 
                 2226 
                 NA 
                 NA 
                 NA 
               
               
                   
                 chlorohydrolase 
               
               
                 8084v20141116 
                 hydantoin racemase 
                 165 
                 165 
                 1241 
                 2227 
                 NA 
                 NA 
                 NA 
               
               
                 8095v20141116 
                 glucose-methanol- 
                 2228 
                 169 
                 1242 
                 2228 
                 NA 
                 NA 
                 NA 
               
               
                   
                 choline oxidoreductase 
               
               
                 8099v20141116 
                 Asp/Glu/hydantoin 
                 2229 
                 172 
                 1244 
                 2229 
                 NA 
                 NA 
                 NA 
               
               
                   
                 racemase 
               
               
                 8114v20141116 
                 polysaccharide 
                 175 
                 175 
                 1245 
                 NA 
                 NA 
                 NA 
                 4150 
               
               
                   
                 deacetylase 
               
               
                 8273v20141116 
                 ABC transporter 
                 2234 
                 186 
                 1255 
                 2234 
                 NA 
                 NA 
                 NA 
               
               
                   
                 permease 
               
               
                 8289v20141116 
                 hypothetical protein 
                 2235 
                 188 
                 1257 
                 2235 
                 NA 
                 NA 
                 NA 
               
               
                 8300v20141116 
                 Holliday junction DNA 
                 191 
                 191 
                 1259 
                 NA 
                 NA 
                 NA 
                 4168 
               
               
                   
                 helicase RuvB 
               
               
                 8303v20141116 
                 amidase 
                 1260 
                 193 
                 1260 
                 2236 
                 NA 
                 NA 
                 NA 
               
               
                 8310v20141116 
                 monooxygenase 
                 195 
                 195 
                 1262 
                 NA 
                 NA 
                 NA 
                 4170 
               
               
                 8318v20141116 
                 hypothetical protein 
                 200 
                 200 
                 1267 
                 NA 
                 NA 
                 NA 
                 4174 
               
               
                 8331v20141116 
                 hypothetical protein 
                 202 
                 202 
                 1268 
                 NA 
                 NA 
                 NA 
                 4175 
               
               
                 8335v20141116 
                 hypothetical protein 
                 4176 
                 205 
                 1271 
                 NA 
                 NA 
                 NA 
                 4176 
               
               
                 8475v20141116 
                 hypothetical protein 
                 210 
                 210 
                 1276 
                 2249 
                 NA 
                 NA 
                 NA 
               
               
                 8524v20141116 
                 oxidoreductase 
                 215 
                 215 
                 1280 
                 NA 
                 NA 
                 NA 
                 4190 
               
               
                 8538v20141116 
                 dehydrogenase 
                 218 
                 218 
                 1283 
                 2250 
                 NA 
                 NA 
                 NA 
               
               
                 8539v20141116 
                 AraC family 
                 2251 
                 219 
                 1284 
                 2251 
                 NA 
                 NA 
                 NA 
               
               
                   
                 transcriptional 
               
               
                   
                 regulator 
               
               
                 8573v20141116 
                 alkanal 
                 221 
                 221 
                 1286 
                 NA 
                 NA 
                 NA 
                 4191 
               
               
                   
                 monooxygenase 
               
               
                 8579v20141116 
                 hypothetical protein 
                 223 
                 223 
                 1287 
                 NA 
                 NA 
                 NA 
                 4192 
               
               
                 8592v20141116 
                 hydroxymethylglutaryl- 
                 226 
                 226 
                 1289 
                 2255 
                 NA 
                 NA 
                 NA 
               
               
                   
                 CoA lyase 
               
               
                 8593v20141116 
                 hypothetical protein 
                 3631 
                 227 
                 1290 
                 NA 
                 NA 
                 3631 
                 NA 
               
               
                 8599v20141116 
                 hypothetical protein 
                 2939 
                 229 
                 1292 
                 NA 
                 2939 
                 NA 
                 NA 
               
               
                 8603v20141116 
                 GntR family 
                 232 
                 232 
                 1294 
                 2256 
                 NA 
                 NA 
                 NA 
               
               
                   
                 transcriptional 
               
               
                   
                 regulator 
               
               
                 8642v20141116 
                 binding-protein- 
                 235 
                 235 
                 1297 
                 2257 
                 NA 
                 NA 
                 NA 
               
               
                   
                 dependent transport 
               
               
                   
                 system inner 
               
               
                   
                 membrane protein 
               
               
                 8643v20141116 
                 ABC transporter 
                 2258 
                 236 
                 1298 
                 2258 
                 NA 
                 NA 
                 NA 
               
               
                   
                 permease 
               
               
                 8644v20141116 
                 ABC transporter 
                 237 
                 237 
                 1299 
                 2259 
                 NA 
                 NA 
                 NA 
               
               
                   
                 substrate-binding 
               
               
                   
                 protein 
               
               
                 8867v20141116 
                 hypothetical protein 
                 244 
                 244 
                 1305 
                 NA 
                 2969 
                 NA 
                 NA 
               
               
                 8906v20141116 
                 methylcrotonoyl-CoA 
                 254 
                 254 
                 1312 
                 2265 
                 NA 
                 NA 
                 NA 
               
               
                   
                 carboxylase 
               
               
                 8907v20141116 
                 TetR family 
                 2266 
                 255 
                 1313 
                 2266 
                 NA 
                 NA 
                 NA 
               
               
                   
                 transcriptional 
               
               
                   
                 regulator 
               
               
                 8922v20141116 
                 response regulator 
                 4206 
                 257 
                 1315 
                 NA 
                 NA 
                 NA 
                 4206 
               
               
                   
                 receiver protein 
               
               
                 8932v20141116 
                 transthyretin 
                 266 
                 266 
                 1319 
                 2267 
                 NA 
                 NA 
                 NA 
               
               
                 8957v20141116 
                 hypothetical protein 
                 274 
                 274 
                 1327 
                 NA 
                 NA 
                 3647 
                 NA 
               
               
                 9274v20141116 
                 hypothetical protein 
                 2278 
                 291 
                 1350 
                 2278 
                 NA 
                 NA 
                 NA 
               
               
                   
                 Mrad2831_4275 
               
               
                 9275v20141116 
                 3-methylcrotonyl-CoA 
                 2279 
                 292 
                 1351 
                 2279 
                 NA 
                 NA 
                 NA 
               
               
                   
                 carboxylase subunit 
               
               
                   
                 alpha 
               
               
                 9277v20141116 
                 transposase 
                 293 
                 293 
                 1352 
                 NA 
                 NA 
                 NA 
                 4244 
               
               
                 9280v20141116 
                 glycosyltransferase 
                 2990 
                 295 
                 1354 
                 NA 
                 2990 
                 NA 
                 NA 
               
               
                 9320v20141116 
                 hydrolase 
                 314 
                 314 
                 1365 
                 2283 
                 NA 
                 NA 
                 NA 
               
               
                 9324v20141116 
                 hypothetical protein 
                 316 
                 316 
                 1367 
                 NA 
                 NA 
                 3664 
                 NA 
               
               
                 9342v20141116 
                 hypothetical protein 
                 2284 
                 NA 
                 1372 
                 2284 
                 NA 
                 3665 
                 NA 
               
               
                 9755v20141116 
                 hypothetical protein 
                 362 
                 362 
                 1419 
                 2290 
                 NA 
                 NA 
                 NA 
               
               
                 9774v20141116 
                 ATPase 
                 1424 
                 374 
                 1424 
                 NA 
                 NA 
                 3678 
                 NA 
               
               
                 9781v20141116 
                 UDP- 
                 2292 
                 376 
                 1426 
                 2292 
                 NA 
                 NA 
                 NA 
               
               
                   
                 glucosyltransferase 
               
               
                 10245v20141116 
                 acetolactate synthase 
                 393 
                 393 
                 1448 
                 2303 
                 NA 
                 NA 
                 NA 
               
               
                 10246v20141116 
                 GntR family 
                 2304 
                 394 
                 1449 
                 2304 
                 NA 
                 NA 
                 NA 
               
               
                   
                 transcriptional 
               
               
                   
                 regulator 
               
               
                 10263v20141116 
                 hypothetical protein 
                 409 
                 409 
                 1463 
                 2305 
                 NA 
                 NA 
                 NA 
               
               
                 10329v20141116 
                 fatty acid--CoA ligase 
                 456 
                 456 
                 1507 
                 2309 
                 NA 
                 NA 
                 NA 
               
               
                 10348v20141116 
                 None 
                 469 
                 469 
                 1517 
                 NA 
                 NA 
                 3694 
                 NA 
               
               
                 11120v20141116 
                 hypothetical protein 
                 577 
                 577 
                 1629 
                 2319 
                 NA 
                 NA 
                 NA 
               
               
                 15411v20141116 
                 NAD-binding 6- 
                 925 
                 925 
                 2062 
                 2369 
                 NA 
                 NA 
                 NA 
               
               
                   
                 phosphogluconate 
               
               
                   
                 dehydrogenase 
               
               
                 4672v20141116 
                 heme peroxidase with 
                 3351 
                 NA 
                 NA 
                 NA 
                 2466 
                 3351 
                 NA 
               
               
                   
                 hemolysin-type 
               
               
                   
                 calcium-binding 
               
               
                   
                 domain 
               
               
                 4897v20141116 
                 elongation factor Tu 
                 2489 
                 NA 
                 NA 
                 NA 
                 2489 
                 NA 
                 3970 
               
               
                 5002v20141116 
                 thiol-disulfide 
                 2498 
                 NA 
                 NA 
                 NA 
                 2498 
                 3375 
                 NA 
               
               
                   
                 oxidoreductase 
               
               
                 5040v20141116 
                 AraC family 
                 2501 
                 NA 
                 NA 
                 NA 
                 2501 
                 NA 
                 3976 
               
               
                   
                 transcriptional 
               
               
                   
                 regulator 
               
               
                 5079v20141116 
                 flagellar hook-length 
                 3379 
                 NA 
                 NA 
                 NA 
                 2503 
                 3379 
                 NA 
               
               
                   
                 control protein 
               
               
                 5117v20141116 
                 hypothetical protein 
                 3382 
                 NA 
                 NA 
                 NA 
                 2507 
                 3382 
                 NA 
               
               
                 5119v20141116 
                 multidrug ABC 
                 3384 
                 NA 
                 NA 
                 NA 
                 2509 
                 3384 
                 NA 
               
               
                   
                 transporter ATP- 
               
               
                   
                 binding protein 
               
               
                 5147v20141116 
                 hypothetical protein 
                 2511 
                 NA 
                 NA 
                 NA 
                 2511 
                 NA 
                 3981 
               
               
                   
                 Mpop_1464 
               
               
                 5180v20141116 
                 glycoside hydrolase 
                 3386 
                 NA 
                 NA 
                 NA 
                 2512 
                 3386 
                 NA 
               
               
                   
                 family 3 
               
               
                 5184v20141116 
                 hypothetical protein 
                 2514 
                 NA 
                 NA 
                 NA 
                 2514 
                 NA 
                 3982 
               
               
                 5205v20141116 
                 DNA invertase gene 
                 34 
                 34 
                 NA 
                 NA 
                 NA 
                 NA 
                 3984 
               
               
                   
                 rlgA 
               
               
                 5219v20141116 
                 hypothetical protein 
                 3986 
                 NA 
                 NA 
                 NA 
                 2518 
                 NA 
                 3986 
               
               
                   
                 MexAM1_META1p0208 
               
               
                 5228v20141116 
                 ABC transporter 
                 3390 
                 NA 
                 NA 
                 NA 
                 2519 
                 3390 
                 NA 
               
               
                   
                 permease 
               
               
                 5233v20141116 
                 membrane protein 
                 3391 
                 NA 
                 NA 
                 NA 
                 2520 
                 3391 
                 NA 
               
               
                 5275v20141116 
                 gamma- 
                 2524 
                 NA 
                 NA 
                 NA 
                 2524 
                 3395 
                 NA 
               
               
                   
                 glutamyltransferase 
               
               
                 5284v20141116 
                 hypothetical protein 
                 2526 
                 NA 
                 NA 
                 NA 
                 2526 
                 3397 
                 NA 
               
               
                   
                 MexAM1_META1p3378 
               
               
                 5287v20141116 
                 FAD linked oxidase 
                 2527 
                 NA 
                 NA 
                 NA 
                 2527 
                 3398 
                 NA 
               
               
                   
                 domain-containing 
               
               
                   
                 protein 
               
               
                 5289v20141116 
                 Siderophore 
                 2528 
                 NA 
                 NA 
                 NA 
                 2528 
                 3399 
                 NA 
               
               
                   
                 synthetase component 
               
               
                 5318v20141116 
                 hypothetical protein 
                 2529 
                 NA 
                 NA 
                 NA 
                 2529 
                 NA 
                 3989 
               
               
                   
                 Mpop_4361 
               
               
                 5335v20141116 
                 AraC family 
                 3990 
                 NA 
                 NA 
                 NA 
                 2531 
                 NA 
                 3990 
               
               
                   
                 transcriptional 
               
               
                   
                 regulator 
               
               
                 5337v20141116 
                 hypothetical protein 
                 2532 
                 NA 
                 NA 
                 NA 
                 2532 
                 3400 
                 NA 
               
               
                   
                 Mpop_4929 
               
               
                 5379v20141116 
                 hypothetical protein 
                 2535 
                 NA 
                 NA 
                 NA 
                 2535 
                 3402 
                 NA 
               
               
                   
                 MexAM1_META1p2104 
               
               
                 5381v20141116 
                 4Fe—4S ferredoxin 
                 3403 
                 NA 
                 NA 
                 NA 
                 2537 
                 3403 
                 NA 
               
               
                 5382v20141116 
                 hypothetical protein 
                 3404 
                 NA 
                 NA 
                 NA 
                 2538 
                 3404 
                 NA 
               
               
                   
                 METDI4726 
               
               
                 5383v20141116 
                 hypothetical protein 
                 2539 
                 NA 
                 NA 
                 NA 
                 2539 
                 3405 
                 NA 
               
               
                   
                 Mext_3764 
               
               
                 5384v20141116 
                 N-acetyltransferase 
                 3406 
                 NA 
                 NA 
                 NA 
                 2540 
                 3406 
                 NA 
               
               
                   
                 GCN5 
               
               
                 5390v20141116 
                 hypothetical protein 
                 3993 
                 NA 
                 NA 
                 NA 
                 2541 
                 NA 
                 3993 
               
               
                 5392v20141116 
                 hypothetical protein 
                 3408 
                 NA 
                 NA 
                 NA 
                 2544 
                 3408 
                 NA 
               
               
                   
                 Mext_3467 
               
               
                 5398v20141116 
                 hypothetical protein 
                 2545 
                 NA 
                 NA 
                 NA 
                 2545 
                 3409 
                 NA 
               
               
                   
                 Mchl_3886 
               
               
                 5419v20141116 
                 diguanylate cyclase 
                 3410 
                 NA 
                 NA 
                 NA 
                 2546 
                 3410 
                 NA 
               
               
                 5437v20141116 
                 hypothetical protein 
                 2548 
                 NA 
                 NA 
                 NA 
                 2548 
                 3414 
                 NA 
               
               
                   
                 Mpop_2189 
               
               
                 5466v20141116 
                 hypothetical protein 
                 2549 
                 NA 
                 NA 
                 NA 
                 2549 
                 3415 
                 NA 
               
               
                   
                 Mpop_0206 
               
               
                 5475v20141116 
                 conserved hypothetical 
                 2552 
                 NA 
                 NA 
                 NA 
                 2552 
                 NA 
                 4000 
               
               
                   
                 protein 
               
               
                 5476v20141116 
                 hypothetical protein 
                 4001 
                 NA 
                 NA 
                 NA 
                 2553 
                 NA 
                 4001 
               
               
                   
                 AZOLI_p40379 
               
               
                 5477v20141116 
                 HAD-superfamily 
                 2554 
                 NA 
                 NA 
                 NA 
                 2554 
                 3418 
                 NA 
               
               
                   
                 hydrolase 
               
               
                 5480v20141116 
                 hypothetical protein 
                 3419 
                 NA 
                 NA 
                 NA 
                 2555 
                 3419 
                 NA 
               
               
                   
                 METDI4261 
               
               
                 5482v20141116 
                 hypothetical protein 
                 2556 
                 NA 
                 NA 
                 NA 
                 2556 
                 3420 
                 NA 
               
               
                   
                 MexAM1_META1p3862 
               
               
                 5483v20141116 
                 hypothetical protein 
                 3421 
                 NA 
                 NA 
                 NA 
                 2557 
                 3421 
                 NA 
               
               
                 5488v20141116 
                 fatty acid desaturase; 
                 2559 
                 NA 
                 NA 
                 NA 
                 2559 
                 3423 
                 NA 
               
               
                   
                 membrane protein 
               
               
                 5490v20141116 
                 hypothetical protein 
                 2560 
                 NA 
                 NA 
                 NA 
                 2560 
                 3424 
                 NA 
               
               
                   
                 MexAM1_META1p1300 
               
               
                 5524v20141116 
                 hypothetical protein 
                 3432 
                 NA 
                 NA 
                 NA 
                 2564 
                 3432 
                 NA 
               
               
                 5525v20141116 
                 hypothetical protein 
                 2565 
                 NA 
                 NA 
                 NA 
                 2565 
                 3433 
                 NA 
               
               
                   
                 Mpop_5158 
               
               
                 5526v20141116 
                 hypothetical protein 
                 2566 
                 NA 
                 NA 
                 NA 
                 2566 
                 3434 
                 NA 
               
               
                   
                 Mext_4623 
               
               
                 5530v20141116 
                 Bacterial extracellular 
                 4009 
                 NA 
                 NA 
                 NA 
                 2567 
                 NA 
                 4009 
               
               
                   
                 solute-binding protein 
               
               
                   
                 family 3 
               
               
                 5536v20141116 
                 hypothetical protein 
                 2568 
                 NA 
                 NA 
                 NA 
                 2568 
                 3435 
                 NA 
               
               
                 5543v20141116 
                 xylose isomerase 
                 2569 
                 NA 
                 NA 
                 NA 
                 2569 
                 3436 
                 NA 
               
               
                   
                 domain-containing 
               
               
                   
                 protein 
               
               
                 5546v20141116 
                 hypothetical protein 
                 3437 
                 NA 
                 NA 
                 NA 
                 2570 
                 3437 
                 NA 
               
               
                   
                 MexAM1_META1p0483 
               
               
                 5556v20141116 
                 diguanylate cyclase 
                 3438 
                 NA 
                 NA 
                 NA 
                 2571 
                 3438 
                 NA 
               
               
                 5568v20141116 
                 protein transcription 
                 3440 
                 NA 
                 NA 
                 NA 
                 NA 
                 3440 
                 4011 
               
               
                   
                 factor 
               
               
                 5577v20141116 
                 hypothetical protein 
                 2573 
                 NA 
                 NA 
                 NA 
                 2573 
                 3441 
                 NA 
               
               
                   
                 Mpop_1561 
               
               
                 5578v20141116 
                 sodium:solute 
                 2574 
                 NA 
                 NA 
                 NA 
                 2574 
                 3442 
                 NA 
               
               
                   
                 symporter 
               
               
                 5610v20141116 
                 hypothetical protein 
                 2575 
                 NA 
                 NA 
                 NA 
                 2575 
                 3445 
                 NA 
               
               
                   
                 Mchl_2392 
               
               
                 5612v20141116 
                 hypothetical protein 
                 2576 
                 NA 
                 NA 
                 NA 
                 2576 
                 3446 
                 NA 
               
               
                   
                 MexAM1_META1p5060 
               
               
                 5618v20141116 
                 hypothetical protein 
                 3447 
                 NA 
                 NA 
                 NA 
                 2577 
                 3447 
                 NA 
               
               
                 5619v20141116 
                 hypothetical protein 
                 3448 
                 NA 
                 NA 
                 NA 
                 2578 
                 3448 
                 NA 
               
               
                   
                 MexAM1_META1p2965 
               
               
                 5625v20141116 
                 hypothetical protein 
                 2580 
                 NA 
                 NA 
                 NA 
                 2580 
                 3449 
                 NA 
               
               
                   
                 Mchl_4383 
               
               
                 5626v20141116 
                 hypothetical protein 
                 3450 
                 NA 
                 NA 
                 NA 
                 2581 
                 3450 
                 NA 
               
               
                   
                 Mext_3503 
               
               
                 5627v20141116 
                 protein-L-isoaspartate 
                 2582 
                 NA 
                 NA 
                 NA 
                 2582 
                 3451 
                 NA 
               
               
                   
                 O-methyltransferase 
               
               
                 5628v20141116 
                 hypothetical protein 
                 2583 
                 NA 
                 NA 
                 NA 
                 2583 
                 3452 
                 NA 
               
               
                 5635v20141116 
                 hypothetical protein 
                 2584 
                 NA 
                 NA 
                 NA 
                 2584 
                 3453 
                 NA 
               
               
                   
                 Mext_4188 
               
               
                 5636v20141116 
                 hypothetical protein 
                 2585 
                 NA 
                 NA 
                 NA 
                 2585 
                 3454 
                 NA 
               
               
                   
                 Mpop_4705 
               
               
                 5642v20141116 
                 hypothetical protein 
                 4014 
                 NA 
                 NA 
                 NA 
                 NA 
                 3455 
                 4014 
               
               
                   
                 METDI0650 
               
               
                 5650v20141116 
                 ATPase 
                 2586 
                 NA 
                 NA 
                 NA 
                 2586 
                 3456 
                 NA 
               
               
                 5657v20141116 
                 two component LuxR 
                 2587 
                 NA 
                 NA 
                 NA 
                 2587 
                 3457 
                 NA 
               
               
                   
                 family transcriptional 
               
               
                   
                 regulator 
               
               
                 5672v20141116 
                 hypothetical protein 
                 2588 
                 NA 
                 NA 
                 NA 
                 2588 
                 3459 
                 NA 
               
               
                   
                 MexAM1_META1p1076 
               
               
                 5679v20141116 
                 acetate kinase 
                 2589 
                 NA 
                 NA 
                 NA 
                 2589 
                 3461 
                 NA 
               
               
                 5684v20141116 
                 hypothetical protein 
                 2591 
                 NA 
                 NA 
                 NA 
                 2591 
                 NA 
                 4015 
               
               
                 5686v20141116 
                 EAL domain-containing 
                 2592 
                 NA 
                 NA 
                 NA 
                 2592 
                 3463 
                 NA 
               
               
                   
                 protein 
               
               
                 5689v20141116 
                 AsnC family 
                 2593 
                 NA 
                 NA 
                 NA 
                 2593 
                 3464 
                 NA 
               
               
                   
                 transcriptional 
               
               
                   
                 regulator 
               
               
                 5691v20141116 
                 hypothetical protein 
                 2594 
                 NA 
                 NA 
                 NA 
                 2594 
                 3465 
                 NA 
               
               
                   
                 Mchl_3961 
               
               
                 5692v20141116 
                 two-component LuxR 
                 2595 
                 NA 
                 NA 
                 NA 
                 2595 
                 3466 
                 NA 
               
               
                   
                 family transcriptional 
               
               
                   
                 regulator 
               
               
                 5693v20141116 
                 hypothetical protein 
                 2596 
                 NA 
                 NA 
                 NA 
                 2596 
                 3467 
                 NA 
               
               
                   
                 Mpop_0877 
               
               
                 5695v20141116 
                 secretion protein HlyD 
                 2598 
                 NA 
                 NA 
                 NA 
                 2598 
                 3468 
                 NA 
               
               
                 5698v20141116 
                 hypothetical protein 
                 3469 
                 NA 
                 NA 
                 NA 
                 2599 
                 3469 
                 NA 
               
               
                   
                 Mext_0717 
               
               
                 5699v20141116 
                 transcriptional 
                 2600 
                 NA 
                 NA 
                 NA 
                 2600 
                 3470 
                 NA 
               
               
                   
                 regulator 
               
               
                 5712v20141116 
                 HlyD family type I 
                 2602 
                 NA 
                 NA 
                 NA 
                 2602 
                 3471 
                 NA 
               
               
                   
                 secretion membrane 
               
               
                   
                 fusion protein 
               
               
                 5735v20141116 
                 integrase catalytic 
                 55 
                 55 
                 1132 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 subunit 
               
               
                 5737v20141116 
                 putative transposase 
                 2185 
                 NA 
                 1133 
                 2185 
                 NA 
                 NA 
                 NA 
               
               
                 5745v20141116 
                 hypothetical protein 
                 4017 
                 NA 
                 NA 
                 NA 
                 2606 
                 NA 
                 4017 
               
               
                   
                 Mpop_0065 
               
               
                 5752v20141116 
                 hypothetical protein 
                 2610 
                 NA 
                 NA 
                 NA 
                 2610 
                 3472 
                 NA 
               
               
                   
                 Mpop_0858 
               
               
                 5756v20141116 
                 hypothetical protein 
                 2612 
                 NA 
                 NA 
                 NA 
                 2612 
                 3473 
                 NA 
               
               
                   
                 Mext_1191 
               
               
                 5783v20141116 
                 rhizobiocin secretion 
                 2618 
                 NA 
                 NA 
                 NA 
                 2618 
                 3475 
                 NA 
               
               
                   
                 protein rspD 
               
               
                 5802v20141116 
                 hypothetical protein 
                 3477 
                 NA 
                 NA 
                 NA 
                 2620 
                 3477 
                 NA 
               
               
                   
                 Mext_3619 
               
               
                 5803v20141116 
                 NADP-dependent 
                 2621 
                 NA 
                 NA 
                 NA 
                 2621 
                 3478 
                 NA 
               
               
                   
                 alcohol dehydrogenase 
               
               
                 5812v20141116 
                 Urease accessory 
                 2625 
                 NA 
                 NA 
                 NA 
                 2625 
                 3479 
                 NA 
               
               
                   
                 protein UreD 
               
               
                 5813v20141116 
                 urea transporter 
                 2626 
                 NA 
                 NA 
                 NA 
                 2626 
                 3480 
                 NA 
               
               
                 5814v20141116 
                 ammonium 
                 2627 
                 NA 
                 NA 
                 NA 
                 2627 
                 3481 
                 NA 
               
               
                   
                 transporter 
               
               
                 5822v20141116 
                 hypothetical protein 
                 2628 
                 NA 
                 NA 
                 NA 
                 2628 
                 3482 
                 NA 
               
               
                   
                 MexAM1_META1p3379 
               
               
                 5845v20141116 
                 hypothetical protein 
                 2630 
                 NA 
                 NA 
                 2186 
                 2630 
                 NA 
                 NA 
               
               
                   
                 Mpop_0716 
               
               
                 5859v20141116 
                 hemolysin-type 
                 3486 
                 NA 
                 NA 
                 NA 
                 2632 
                 3486 
                 NA 
               
               
                   
                 calcium-binding 
               
               
                   
                 protein 
               
               
                 5866v20141116 
                 hypothetical protein 
                 3487 
                 NA 
                 NA 
                 NA 
                 2633 
                 3487 
                 NA 
               
               
                   
                 Mchl_1323 
               
               
                 5872v20141116 
                 hypothetical protein 
                 2636 
                 NA 
                 NA 
                 NA 
                 2636 
                 3488 
                 NA 
               
               
                   
                 Mpop_3121 
               
               
                 5881v20141116 
                 hypothetical protein 
                 2187 
                 NA 
                 NA 
                 2187 
                 2638 
                 NA 
                 NA 
               
               
                   
                 Mpop_1945 
               
               
                 5884v20141116 
                 urease subunit gamma 
                 3489 
                 NA 
                 NA 
                 NA 
                 2640 
                 3489 
                 NA 
               
               
                 5885v20141116 
                 urease subunit beta 
                 2641 
                 NA 
                 NA 
                 NA 
                 2641 
                 3490 
                 NA 
               
               
                 5886v20141116 
                 camphor resistance 
                 2642 
                 NA 
                 NA 
                 NA 
                 2642 
                 3491 
                 NA 
               
               
                   
                 protein CrcB 
               
               
                 5887v20141116 
                 UreE urease accessory 
                 3492 
                 NA 
                 NA 
                 NA 
                 2643 
                 3492 
                 NA 
               
               
                   
                 domain-containing 
               
               
                   
                 protein 
               
               
                 5888v20141116 
                 urease accessory 
                 2644 
                 NA 
                 NA 
                 NA 
                 2644 
                 3493 
                 NA 
               
               
                   
                 protein UreF 
               
               
                 5889v20141116 
                 urease accessory 
                 3494 
                 NA 
                 NA 
                 NA 
                 2645 
                 3494 
                 NA 
               
               
                   
                 protein UreG 
               
               
                 5890v20141116 
                 hypothetical protein 
                 3495 
                 NA 
                 NA 
                 NA 
                 2646 
                 3495 
                 NA 
               
               
                 5934v20141116 
                 carbon monoxide 
                 58 
                 58 
                 1135 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 dehydrogenase subunit 
               
               
                   
                 G 
               
               
                 5937v20141116 
                 hypothetical protein 
                 59 
                 59 
                 NA 
                 NA 
                 2662 
                 NA 
                 NA 
               
               
                 5952v20141116 
                 nucleotidyltransferase 
                 4020 
                 NA 
                 NA 
                 NA 
                 2664 
                 NA 
                 4020 
               
               
                 5958v20141116 
                 hypothetical protein 
                 3498 
                 NA 
                 NA 
                 NA 
                 2668 
                 3498 
                 NA 
               
               
                   
                 Mpop_2489 
               
               
                 5963v20141116 
                 camphor resistance 
                 3499 
                 NA 
                 NA 
                 NA 
                 2670 
                 3499 
                 NA 
               
               
                   
                 CrcB protein 
               
               
                 5964v20141116 
                 acid-resistance protein 
                 2671 
                 NA 
                 NA 
                 NA 
                 2671 
                 3500 
                 NA 
               
               
                 5970v20141116 
                 hypothetical protein 
                 3501 
                 NA 
                 NA 
                 NA 
                 2672 
                 3501 
                 NA 
               
               
                 5976v20141116 
                 hypothetical protein 
                 2188 
                 NA 
                 NA 
                 2188 
                 2673 
                 NA 
                 NA 
               
               
                   
                 Mext_2198 
               
               
                 6008v20141116 
                 chloride channel 
                 2678 
                 NA 
                 NA 
                 NA 
                 2678 
                 3503 
                 NA 
               
               
                   
                 protein 
               
               
                 6037v20141116 
                 hypothetical protein 
                 2681 
                 NA 
                 NA 
                 NA 
                 2681 
                 NA 
                 4022 
               
               
                   
                 Mext_2029 
               
               
                 6040v20141116 
                 diguanylate cyclase 
                 2682 
                 NA 
                 NA 
                 NA 
                 2682 
                 3505 
                 NA 
               
               
                 6045v20141116 
                 hypothetical protein 
                 3506 
                 NA 
                 NA 
                 NA 
                 NA 
                 3506 
                 4023 
               
               
                   
                 Mpop_3879 
               
               
                 6100v20141116 
                 N-acetyltransferase 
                 2684 
                 NA 
                 NA 
                 NA 
                 2684 
                 3507 
                 NA 
               
               
                   
                 GCN5 
               
               
                 6123v20141116 
                 TetR family 
                 66 
                 66 
                 1143 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 transcriptional 
               
               
                   
                 regulator 
               
               
                 6155v20141116 
                 hypothetical protein 
                 3508 
                 NA 
                 NA 
                 NA 
                 2690 
                 3508 
                 NA 
               
               
                   
                 Mext_0184 
               
               
                 6156v20141116 
                 hypothetical protein 
                 2691 
                 NA 
                 NA 
                 NA 
                 2691 
                 3509 
                 NA 
               
               
                   
                 MexAM1_META1p2841 
               
               
                 6179v20141116 
                 hypothetical protein 
                 2694 
                 NA 
                 NA 
                 NA 
                 2694 
                 3510 
                 NA 
               
               
                   
                 METDI1994 
               
               
                 6180v20141116 
                 oleate hydratase 
                 2695 
                 NA 
                 NA 
                 NA 
                 2695 
                 3511 
                 NA 
               
               
                 6182v20141116 
                 hypothetical protein 
                 2696 
                 NA 
                 NA 
                 NA 
                 2696 
                 3512 
                 NA 
               
               
                   
                 Mext_4657 
               
               
                 6187v20141116 
                 hypothetical protein 
                 2699 
                 NA 
                 NA 
                 NA 
                 2699 
                 NA 
                 4029 
               
               
                   
                 Mpop_4217 
               
               
                 6198v20141116 
                 hypothetical protein 
                 2701 
                 NA 
                 NA 
                 NA 
                 2701 
                 NA 
                 4030 
               
               
                   
                 Mchl_4111 
               
               
                 6211v20141116 
                 LysR family 
                 2702 
                 69 
                 NA 
                 NA 
                 2702 
                 NA 
                 NA 
               
               
                   
                 transcriptional 
               
               
                   
                 regulator 
               
               
                 6228v20141116 
                 MucR family 
                 2704 
                 NA 
                 NA 
                 NA 
                 2704 
                 3514 
                 NA 
               
               
                   
                 transcriptional 
               
               
                   
                 regulator 
               
               
                 6266v20141116 
                 hypothetical protein 
                 2707 
                 NA 
                 NA 
                 NA 
                 2707 
                 3515 
                 NA 
               
               
                   
                 Mpop_4875 
               
               
                 6267v20141116 
                 hypothetical protein 
                 2708 
                 NA 
                 NA 
                 NA 
                 2708 
                 3516 
                 NA 
               
               
                   
                 Mpop_0711 
               
               
                 6302v20141116 
                 hypothetical protein 
                 2710 
                 NA 
                 NA 
                 NA 
                 2710 
                 3518 
                 NA 
               
               
                   
                 Mext_4665 
               
               
                 6316v20141116 
                 hypothetical protein 
                 1145 
                 71 
                 1145 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 6323v20141116 
                 hypothetical protein 
                 2712 
                 NA 
                 NA 
                 NA 
                 2712 
                 NA 
                 4034 
               
               
                   
                 Mchl_1272 
               
               
                 6355v20141116 
                 hypothetical protein 
                 2713 
                 NA 
                 NA 
                 2192 
                 2713 
                 NA 
                 NA 
               
               
                   
                 MexAM1_META1p2729 
               
               
                 6403v20141116 
                 hypothetical protein 
                 4036 
                 NA 
                 NA 
                 2194 
                 NA 
                 NA 
                 4036 
               
               
                 6404v20141116 
                 hypothetical protein 
                 4037 
                 NA 
                 NA 
                 2195 
                 NA 
                 NA 
                 4037 
               
               
                 6405v20141116 
                 hypothetical protein 
                 2196 
                 NA 
                 NA 
                 2196 
                 NA 
                 NA 
                 4038 
               
               
                 6409v20141116 
                 hypothetical protein 
                 3519 
                 NA 
                 NA 
                 NA 
                 2718 
                 3519 
                 NA 
               
               
                 6410v20141116 
                 putative 2 4 
                 3520 
                 NA 
                 NA 
                 NA 
                 2719 
                 3520 
                 NA 
               
               
                   
                 dihydroxyhept-2-ene-l 
               
               
                   
                 7-dioic acid aldolase 
               
               
                 6412v20141116 
                 amidohydrolase 
                 2720 
                 NA 
                 NA 
                 NA 
                 2720 
                 NA 
                 4039 
               
               
                 6451v20141116 
                 integrase family 
                 74 
                 74 
                 NA 
                 NA 
                 NA 
                 3522 
                 NA 
               
               
                   
                 protein 
               
               
                 6472v20141116 
                 hypothetical protein 
                 2197 
                 NA 
                 1148 
                 2197 
                 NA 
                 NA 
                 NA 
               
               
                   
                 FBFL15_0362 
               
               
                 6475v20141116 
                 hypothetical protein 
                 3523 
                 NA 
                 1149 
                 NA 
                 NA 
                 3523 
                 NA 
               
               
                 6566v20141116 
                 hypothetical protein 
                 2738 
                 NA 
                 NA 
                 NA 
                 2738 
                 NA 
                 4040 
               
               
                   
                 Mchl_1240 
               
               
                 6568v20141116 
                 hypothetical protein 
                 2740 
                 NA 
                 NA 
                 NA 
                 2740 
                 NA 
                 4041 
               
               
                   
                 Mchl_4341 
               
               
                 6571v20141116 
                 hypothetical protein 
                 3524 
                 NA 
                 NA 
                 NA 
                 NA 
                 3524 
                 4042 
               
               
                   
                 MexAM1_META1p4650 
               
               
                 6576v20141116 
                 hypothetical protein 
                 2741 
                 NA 
                 NA 
                 NA 
                 2741 
                 NA 
                 4043 
               
               
                 6587v20141116 
                 hypothetical protein 
                 3525 
                 NA 
                 NA 
                 NA 
                 2743 
                 3525 
                 NA 
               
               
                   
                 METDI5212 
               
               
                 6615v20141116 
                 hypothetical protein 
                 1151 
                 NA 
                 1151 
                 NA 
                 NA 
                 3526 
                 NA 
               
               
                 6616v20141116 
                 hypothetical protein 
                 3527 
                 NA 
                 NA 
                 NA 
                 NA 
                 3527 
                 4044 
               
               
                 6649v20141116 
                 hypothetical protein 
                 2748 
                 NA 
                 NA 
                 NA 
                 2748 
                 3530 
                 NA 
               
               
                 6655v20141116 
                 hypothetical protein 
                 3531 
                 NA 
                 NA 
                 NA 
                 2751 
                 3531 
                 NA 
               
               
                 6656v20141116 
                 hypothetical protein 
                 2753 
                 NA 
                 NA 
                 NA 
                 2753 
                 3532 
                 NA 
               
               
                   
                 Mext_0808 
               
               
                 6665v20141116 
                 hypothetical protein 
                 2754 
                 NA 
                 NA 
                 NA 
                 2754 
                 NA 
                 4048 
               
               
                 6670v20141116 
                 ubiE/COQ5 
                 2756 
                 NA 
                 NA 
                 NA 
                 2756 
                 3533 
                 NA 
               
               
                   
                 methyltransferase 
               
               
                   
                 family enzyme 
               
               
                 6713v20141116 
                 cytochrome C 
                 3535 
                 NA 
                 NA 
                 NA 
                 NA 
                 3535 
                 4049 
               
               
                   
                 biogenesis protein 
               
               
                   
                 CcsA 
               
               
                 6749v20141116 
                 hypothetical protein 
                 1153 
                 NA 
                 1153 
                 NA 
                 NA 
                 3537 
                 NA 
               
               
                 6750v20141116 
                 hypothetical protein 
                 1154 
                 NA 
                 1154 
                 NA 
                 NA 
                 3538 
                 NA 
               
               
                 6777v20141116 
                 hypothetical protein 
                 2200 
                 NA 
                 NA 
                 2200 
                 NA 
                 NA 
                 4051 
               
               
                 6778v20141116 
                 choloylglycine 
                 3539 
                 NA 
                 NA 
                 NA 
                 2759 
                 3539 
                 NA 
               
               
                   
                 hydrolase 
               
               
                 6824v20141116 
                 transposase of ISMex3 
                 78 
                 78 
                 1158 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 IS256 family 
               
               
                 6829v20141116 
                 hypothetical protein 
                 2765 
                 NA 
                 NA 
                 NA 
                 2765 
                 3544 
                 NA 
               
               
                 6832v20141116 
                 HEPN domain- 
                 4055 
                 NA 
                 NA 
                 NA 
                 2766 
                 NA 
                 4055 
               
               
                   
                 containing protein 
               
               
                 6833v20141116 
                 regulatory protein LysR 
                 3546 
                 NA 
                 NA 
                 NA 
                 2767 
                 3546 
                 NA 
               
               
                 6835v20141116 
                 hypothetical protein 
                 2202 
                 NA 
                 NA 
                 2202 
                 NA 
                 NA 
                 4056 
               
               
                   
                 Mchl_5553 
               
               
                 6876v20141116 
                 fermentative D-lactate 
                 2774 
                 NA 
                 NA 
                 NA 
                 2774 
                 3553 
                 NA 
               
               
                   
                 dehydrogenase NAD- 
               
               
                   
                 dependent 
               
               
                 6881v20141116 
                 hypothetical protein 
                 2777 
                 NA 
                 NA 
                 NA 
                 2777 
                 NA 
                 4057 
               
               
                 6892v20141116 
                 hypothetical protein 
                 2778 
                 NA 
                 NA 
                 NA 
                 2778 
                 NA 
                 4059 
               
               
                 6923v20141116 
                 Hypothetical protein 
                 1159 
                 82 
                 1159 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 6941v20141116 
                 hypothetical protein 
                 2779 
                 83 
                 NA 
                 NA 
                 2779 
                 NA 
                 NA 
               
               
                   
                 Mext_1123 
               
               
                 6946v20141116 
                 hypothetical protein 
                 1161 
                 NA 
                 1161 
                 NA 
                 NA 
                 NA 
                 4061 
               
               
                 6982v20141116 
                 hypothetical protein 
                 2790 
                 NA 
                 NA 
                 NA 
                 2790 
                 3558 
                 NA 
               
               
                   
                 Mext_1327 
               
               
                 7002v20141116 
                 esterase 
                 2794 
                 NA 
                 NA 
                 NA 
                 2794 
                 3559 
                 NA 
               
               
                 7004v20141116 
                 hypothetical protein 
                 2795 
                 NA 
                 NA 
                 NA 
                 2795 
                 NA 
                 4065 
               
               
                   
                 Mpop_1856 
               
               
                 7028v20141116 
                 hypothetical protein 
                 2797 
                 NA 
                 NA 
                 NA 
                 2797 
                 NA 
                 4068 
               
               
                 7057v20141116 
                 hypothetical protein 
                 3560 
                 NA 
                 1169 
                 NA 
                 NA 
                 3560 
                 NA 
               
               
                 7068v20141116 
                 xylose isomerase 
                 2801 
                 NA 
                 NA 
                 NA 
                 2801 
                 NA 
                 4072 
               
               
                   
                 domain-containing 
               
               
                   
                 protein 
               
               
                 7077v20141116 
                 NADPH-dependent 
                 2203 
                 NA 
                 NA 
                 2203 
                 2802 
                 NA 
                 NA 
               
               
                   
                 FMN reductase 
               
               
                 7083v20141116 
                 glutathione S- 
                 2204 
                 NA 
                 NA 
                 2204 
                 NA 
                 NA 
                 4073 
               
               
                   
                 transferase 
               
               
                 7096v20141116 
                 diguanylate cyclase 
                 2808 
                 NA 
                 NA 
                 NA 
                 2808 
                 3563 
                 NA 
               
               
                 7116v20141116 
                 transposase mutator 
                 1170 
                 90 
                 1170 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 type 
               
               
                 7127v20141116 
                 hypothetical protein 
                 4074 
                 94 
                 NA 
                 NA 
                 NA 
                 NA 
                 4074 
               
               
                   
                 Mnod_6985 
               
               
                 7149v20141116 
                 hypothetical protein 
                 4075 
                 NA 
                 NA 
                 NA 
                 NA 
                 3564 
                 4075 
               
               
                 7158v20141116 
                 short-chain 
                 3565 
                 NA 
                 NA 
                 NA 
                 2816 
                 3565 
                 NA 
               
               
                   
                 dehydrogenase/reductase SDR 
               
               
                 7238v20141116 
                 methyl-accepting 
                 4078 
                 NA 
                 NA 
                 NA 
                 NA 
                 3568 
                 4078 
               
               
                   
                 chemotaxis sensory 
               
               
                   
                 transducer 
               
               
                 7242v20141116 
                 flagellar hook length 
                 2817 
                 NA 
                 NA 
                 NA 
                 2817 
                 3570 
                 NA 
               
               
                   
                 determination protein 
               
               
                 7272v20141116 
                 hypothetical protein 
                 4079 
                 NA 
                 NA 
                 NA 
                 2823 
                 NA 
                 4079 
               
               
                   
                 MexAM1_META1p0887 
               
               
                 7303v20141116 
                 glycosyl hydrolase 
                 2827 
                 NA 
                 1182 
                 NA 
                 2827 
                 NA 
                 NA 
               
               
                 7316v20141116 
                 hypothetical protein 
                 4092 
                 NA 
                 NA 
                 2207 
                 NA 
                 NA 
                 4092 
               
               
                   
                 Mpop_4411 
               
               
                 7318v20141116 
                 hypothetical protein 
                 110 
                 110 
                 1187 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 Mrad2831_3608 
               
               
                 7330v20141116 
                 short-chain 
                 2831 
                 NA 
                 NA 
                 NA 
                 2831 
                 NA 
                 4093 
               
               
                   
                 dehydrogenase/reductase SDR 
               
               
                 7334v20141116 
                 hypothetical protein 
                 112 
                 112 
                 NA 
                 NA 
                 2832 
                 NA 
                 NA 
               
               
                 7364v20141116 
                 IclR family 
                 2833 
                 NA 
                 NA 
                 NA 
                 2833 
                 NA 
                 4095 
               
               
                   
                 transcriptional 
               
               
                   
                 regulator 
               
               
                 7384v20141116 
                 hypothetical protein 
                 4096 
                 NA 
                 NA 
                 NA 
                 NA 
                 3576 
                 4096 
               
               
                   
                 Mpop_4088 
               
               
                 7388v20141116 
                 hypothetical protein 
                 2834 
                 NA 
                 NA 
                 NA 
                 2834 
                 NA 
                 4097 
               
               
                   
                 Mpop_4204 
               
               
                 7389v20141116 
                 peptidase M24 
                 2835 
                 NA 
                 NA 
                 NA 
                 2835 
                 NA 
                 4098 
               
               
                 7390v20141116 
                 thiamine 
                 2836 
                 NA 
                 NA 
                 NA 
                 2836 
                 NA 
                 4099 
               
               
                   
                 pyrophosphate protein 
               
               
                   
                 central region 
               
               
                 7399v20141116 
                 hypothetical protein 
                 3577 
                 NA 
                 NA 
                 NA 
                 2842 
                 3577 
                 NA 
               
               
                 7418v20141116 
                 hypothetical protein 
                 2209 
                 NA 
                 NA 
                 2209 
                 2843 
                 NA 
                 NA 
               
               
                 7420v20141116 
                 hypothetical protein 
                 2844 
                 NA 
                 NA 
                 NA 
                 2844 
                 3578 
                 NA 
               
               
                   
                 Mchl_5174 
               
               
                 7422v20141116 
                 hypothetical protein 
                 2845 
                 NA 
                 NA 
                 NA 
                 2845 
                 3579 
                 NA 
               
               
                   
                 Mext_4882 
               
               
                 7435v20141116 
                 hypothetical protein 
                 2852 
                 NA 
                 NA 
                 NA 
                 2852 
                 NA 
                 4101 
               
               
                 7437v20141116 
                 hypothetical protein 
                 4102 
                 NA 
                 NA 
                 NA 
                 NA 
                 3581 
                 4102 
               
               
                   
                 LILAB_22195 
               
               
                 7465v20141116 
                 hypothetical protein 
                 3582 
                 NA 
                 NA 
                 2210 
                 NA 
                 3582 
                 NA 
               
               
                 7482v20141116 
                 phage putative protein 
                 1190 
                 117 
                 1190 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 7484v20141116 
                 hypothetical protein 
                 119 
                 119 
                 1191 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 7489v20141116 
                 enoyl-CoA 
                 120 
                 120 
                 1192 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 hydratase/isomerase 
               
               
                 7517v20141116 
                 inner-membrane 
                 2857 
                 NA 
                 NA 
                 NA 
                 2857 
                 NA 
                 4105 
               
               
                   
                 translocator 
               
               
                 7518v20141116 
                 branched chain amino 
                 4106 
                 NA 
                 NA 
                 NA 
                 2858 
                 NA 
                 4106 
               
               
                   
                 acid ABC transporter 
               
               
                   
                 substrate-binding 
               
               
                   
                 protein 
               
               
                 7558v20141116 
                 hypothetical protein 
                 3584 
                 NA 
                 1195 
                 NA 
                 NA 
                 3584 
                 NA 
               
               
                 7562v20141116 
                 integrase catalytic 
                 123 
                 123 
                 1196 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 subunit 
               
               
                 7586v20141116 
                 hypothetical protein 
                 3586 
                 NA 
                 1198 
                 NA 
                 NA 
                 3586 
                 NA 
               
               
                 7587v20141116 
                 hypothetical protein 
                 3587 
                 NA 
                 1199 
                 NA 
                 NA 
                 3587 
                 NA 
               
               
                 7588v20141116 
                 hypothetical protein 
                 1200 
                 NA 
                 1200 
                 NA 
                 NA 
                 3588 
                 NA 
               
               
                 7589v20141116 
                 hypothetical protein 
                 1201 
                 NA 
                 1201 
                 NA 
                 NA 
                 3589 
                 NA 
               
               
                 7590v20141116 
                 hypothetical protein 
                 2211 
                 NA 
                 NA 
                 2211 
                 NA 
                 NA 
                 4107 
               
               
                   
                 Mrad2831_2637 
               
               
                 7624v20141116 
                 N-acetyltransferase 
                 2212 
                 NA 
                 NA 
                 2212 
                 2861 
                 NA 
                 NA 
               
               
                   
                 GCN5 
               
               
                 7699v20141116 
                 hypothetical protein 
                 126 
                 126 
                 1202 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 7713v20141116 
                 hypothetical protein 
                 129 
                 129 
                 1205 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 7734v20141116 
                 hypothetical protein 
                 2215 
                 132 
                 NA 
                 2215 
                 NA 
                 NA 
                 NA 
               
               
                   
                 Mnod_8620 
               
               
                 7748v20141116 
                 hypothetical protein 
                 1208 
                 133 
                 1208 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 7749v20141116 
                 integrase 
                 134 
                 134 
                 NA 
                 NA 
                 2875 
                 NA 
                 NA 
               
               
                 7751v20141116 
                 integrase catalytic 
                 1210 
                 136 
                 1210 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 subunit 
               
               
                 7782v20141116 
                 hypothetical protein 
                 2878 
                 NA 
                 NA 
                 NA 
                 2878 
                 3597 
                 NA 
               
               
                 7783v20141116 
                 GntR family 
                 4116 
                 NA 
                 NA 
                 NA 
                 2879 
                 NA 
                 4116 
               
               
                   
                 transcriptional 
               
               
                   
                 regulator 
               
               
                 7813v20141116 
                 None 
                 2883 
                 NA 
                 NA 
                 NA 
                 2883 
                 NA 
                 4118 
               
               
                 7814v20141116 
                 hypothetical protein 
                 2884 
                 NA 
                 NA 
                 NA 
                 2884 
                 NA 
                 4119 
               
               
                 7815v20141116 
                 RNA polymerase 
                 2885 
                 NA 
                 NA 
                 NA 
                 2885 
                 NA 
                 4120 
               
               
                   
                 subunit sigma-24 
               
               
                 7829v20141116 
                 hypothetical protein 
                 1213 
                 138 
                 1213 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 7855v20141116 
                 hypothetical protein 
                 141 
                 141 
                 1216 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 7856v20141116 
                 hypothetical protein 
                 4125 
                 142 
                 NA 
                 NA 
                 NA 
                 NA 
                 4125 
               
               
                 7869v20141116 
                 hypothetical protein 
                 144 
                 144 
                 1218 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 Mchl_2588 
               
               
                 7889v20141116 
                 hypothetical protein 
                 147 
                 147 
                 1222 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 Mnod_5347 
               
               
                 7899v20141116 
                 hypothetical protein 
                 150 
                 150 
                 1224 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 7909v20141116 
                 hypothetical protein 
                 2217 
                 152 
                 NA 
                 2217 
                 NA 
                 NA 
                 NA 
               
               
                   
                 Mpop_3836 
               
               
                 7919v20141116 
                 hypothetical protein 
                 2895 
                 NA 
                 1230 
                 NA 
                 2895 
                 NA 
                 NA 
               
               
                 7926v20141116 
                 hypothetical protein 
                 3604 
                 NA 
                 NA 
                 NA 
                 NA 
                 3604 
                 4133 
               
               
                 7931v20141116 
                 None 
                 3605 
                 NA 
                 NA 
                 NA 
                 NA 
                 3605 
                 4134 
               
               
                 7981v20141116 
                 transposase IS3/IS911 family protein 
                 2909 
                 NA 
                 NA 
                 NA 
                 2909 
                 NA 
                 4141 
               
               
                 8024v20141116 
                 short-chain 
                 3609 
                 NA 
                 NA 
                 2220 
                 NA 
                 3609 
                 NA 
               
               
                   
                 dehydrogenase/reductase SDR 
               
               
                 8042v20141116 
                 Hypothetical protein 
                 156 
                 156 
                 1232 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 8052v20141116 
                 MFS transporter 
                 157 
                 157 
                 1233 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 8092v20141116 
                 ABC transporter inner 
                 4146 
                 166 
                 NA 
                 NA 
                 NA 
                 NA 
                 4146 
               
               
                   
                 membrane protein 
               
               
                 8093v20141116 
                 ABC transporter 
                 167 
                 167 
                 NA 
                 NA 
                 NA 
                 NA 
                 4147 
               
               
                 8094v20141116 
                 nitrate/sulfonate/bicarbonate ABC 
                 4148 
                 168 
                 NA 
                 NA 
                 NA 
                 NA 
                 4148 
               
               
                   
                 transporter 
               
               
                 8098v20141116 
                 hypothetical protein 
                 170 
                 170 
                 1243 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 8113v20141116 
                 adenylate/guanylate 
                 4149 
                 174 
                 NA 
                 NA 
                 NA 
                 NA 
                 4149 
               
               
                   
                 cyclase 
               
               
                 8115v20141116 
                 integrase family 
                 2910 
                 176 
                 NA 
                 NA 
                 2910 
                 NA 
                 NA 
               
               
                   
                 protein 
               
               
                 8116v20141116 
                 ISGsu7 transposase 
                 177 
                 177 
                 1246 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 OrfA 
               
               
                 8117v20141116 
                 hypothetical protein 
                 178 
                 178 
                 1247 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 Mrad2831_5711 
               
               
                 8124v20141116 
                 Mobile element 
                 3611 
                 NA 
                 1249 
                 NA 
                 NA 
                 3611 
                 NA 
               
               
                   
                 protein 
               
               
                 8136v20141116 
                 hypothetical protein 
                 2230 
                 NA 
                 NA 
                 2230 
                 2911 
                 NA 
                 NA 
               
               
                   
                 Mpop_2878 
               
               
                 8171v20141116 
                 hypothetical protein 
                 4155 
                 NA 
                 NA 
                 NA 
                 2912 
                 NA 
                 4155 
               
               
                 8179v20141116 
                 response regulator 
                 2232 
                 NA 
                 NA 
                 2232 
                 NA 
                 NA 
                 4156 
               
               
                   
                 receiver 
               
               
                 8180v20141116 
                 None 
                 2233 
                 NA 
                 NA 
                 2233 
                 NA 
                 NA 
                 4157 
               
               
                 8205v20141116 
                 hypothetical protein 
                 2917 
                 NA 
                 NA 
                 NA 
                 2917 
                 NA 
                 4160 
               
               
                 8206v20141116 
                 rhodanese 
                 4161 
                 NA 
                 NA 
                 NA 
                 2918 
                 NA 
                 4161 
               
               
                 8237v20141116 
                 integrase family 
                 2919 
                 NA 
                 NA 
                 NA 
                 2919 
                 3619 
                 NA 
               
               
                   
                 protein 
               
               
                 8258v20141116 
                 hypothetical protein 
                 180 
                 180 
                 NA 
                 NA 
                 NA 
                 3620 
                 NA 
               
               
                 8267v20141116 
                 porin 
                 181 
                 181 
                 1250 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 8268v20141116 
                 hypothetical protein 
                 182 
                 182 
                 1251 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 Mrad2831_0222 
               
               
                 8269v20141116 
                 hypothetical protein 
                 183 
                 183 
                 1252 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 8270v20141116 
                 two component 
                 184 
                 184 
                 1253 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 transcriptional 
               
               
                   
                 regulator 
               
               
                 8271v20141116 
                 RND family efflux 
                 185 
                 185 
                 1254 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 transporter MFP 
               
               
                   
                 subunit 
               
               
                 8284v20141116 
                 thiamine 
                 187 
                 187 
                 1256 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 pyrophosphate binding 
               
               
                   
                 domain-containing 
               
               
                   
                 protein 
               
               
                 8299v20141116 
                 hypothetical protein 
                 190 
                 190 
                 1258 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 8301v20141116 
                 None 
                 4169 
                 192 
                 NA 
                 NA 
                 NA 
                 NA 
                 4169 
               
               
                 8308v20141116 
                 hypothetical protein 
                 194 
                 194 
                 1261 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 8311v20141116 
                 enoyl-CoA hydratase 
                 196 
                 196 
                 1263 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 8332v20141116 
                 hypothetical protein 
                 203 
                 203 
                 1269 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 BJ6T_24320 
               
               
                 8334v20141116 
                 hypothetical protein 
                 204 
                 204 
                 1270 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 8339v20141116 
                 ATP-hydrolyzing 
                 1272 
                 NA 
                 1272 
                 2240 
                 NA 
                 NA 
                 NA 
               
               
                   
                 enzyme 
               
               
                 8361v20141116 
                 plasmid stability 
                 3621 
                 NA 
                 NA 
                 2243 
                 NA 
                 3621 
                 NA 
               
               
                   
                 protein StbC 
               
               
                 8411v20141116 
                 methyltransferase type 
                 4180 
                 NA 
                 NA 
                 NA 
                 NA 
                 3627 
                 4180 
               
               
                   
                 11 
               
               
                 8412v20141116 
                 oxidoreductase 
                 3628 
                 NA 
                 NA 
                 NA 
                 NA 
                 3628 
                 4181 
               
               
                   
                 FAD/NAD(P)-binding 
               
               
                   
                 domain-containing 
               
               
                   
                 protein 
               
               
                 8413v20141116 
                 hypothetical protein 
                 2929 
                 NA 
                 NA 
                 NA 
                 2929 
                 NA 
                 4182 
               
               
                   
                 Mchl_5368 
               
               
                 8445v20141116 
                 integrase family 
                 2937 
                 NA 
                 NA 
                 NA 
                 2937 
                 3629 
                 NA 
               
               
                   
                 protein 
               
               
                 8450v20141116 
                 hypothetical protein 
                 4188 
                 NA 
                 NA 
                 2246 
                 NA 
                 NA 
                 4188 
               
               
                   
                 GDI_3938 
               
               
                 8463v20141116 
                 linear gramicidin 
                 1274 
                 208 
                 1274 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 synthetase subunit C 
               
               
                 8468v20141116 
                 hypothetical protein 
                 209 
                 209 
                 1275 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 8477v20141116 
                 hypothetical protein 
                 211 
                 211 
                 1277 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 8478v20141116 
                 ABC transporter-like 
                 212 
                 212 
                 1278 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 protein 
               
               
                 8479v20141116 
                 acetamidase 
                 213 
                 213 
                 1279 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 8535v20141116 
                 C4-dicarboxylate ABC 
                 216 
                 216 
                 1281 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 transporter 
               
               
                 8536v20141116 
                 nitrate ABC transporter 
                 217 
                 217 
                 1282 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 substrate-binding 
               
               
                   
                 protein 
               
               
                 8572v20141116 
                 replication protein C 
                 220 
                 220 
                 1285 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 8583v20141116 
                 putative radical SAM 
                 224 
                 224 
                 NA 
                 2254 
                 NA 
                 NA 
                 NA 
               
               
                   
                 domain protein 
               
               
                 8588v20141116 
                 4-carboxy 
                 225 
                 225 
                 1288 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 muconolactone 
               
               
                   
                 decarboxylase 
               
               
                 8598v20141116 
                 LysR family 
                 228 
                 228 
                 1291 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 transcriptional 
               
               
                   
                 regulator 
               
               
                 8601v20141116 
                 hypothetical protein 
                 231 
                 231 
                 1293 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 8607v20141116 
                 hypothetical protein 
                 233 
                 233 
                 1295 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 8631v20141116 
                 hypothetical protein 
                 234 
                 234 
                 1296 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 8716v20141116 
                 hypothetical protein 
                 3638 
                 NA 
                 NA 
                 NA 
                 NA 
                 3638 
                 4196 
               
               
                 8826v20141116 
                 phage integrase 
                 2960 
                 NA 
                 NA 
                 2262 
                 2960 
                 NA 
                 NA 
               
               
                 8844v20141116 
                 transposase ISDvu2 
                 239 
                 239 
                 1300 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 8857v20141116 
                 alpha/beta hydrolase 
                 241 
                 241 
                 1302 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 8858v20141116 
                 putative chemotaxis 
                 242 
                 242 
                 1303 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 phosphatase CheZ 
               
               
                 8862v20141116 
                 hypothetical protein 
                 243 
                 243 
                 1304 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 Swoo_4771 
               
               
                 8870v20141116 
                 methionine gamma- 
                 246 
                 246 
                 1306 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 lyase 
               
               
                 8871v20141116 
                 CoA-binding domain- 
                 247 
                 247 
                 NA 
                 NA 
                 2970 
                 NA 
                 NA 
               
               
                   
                 containing protein 
               
               
                 8892v20141116 
                 metal dependent 
                 248 
                 248 
                 1307 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 phosphohydrolase 
               
               
                 8894v20141116 
                 hypothetical protein 
                 249 
                 249 
                 1308 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 8900v20141116 
                 mercuric reductase 
                 252 
                 252 
                 1310 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 8903v20141116 
                 MFS transporter 
                 253 
                 253 
                 1311 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 8908v20141116 
                 hypothetical protein 
                 1314 
                 256 
                 1314 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 Mrad2831_1442 
               
               
                 8923v20141116 
                 hypothetical protein 
                 258 
                 258 
                 1316 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 Mrad2831_5910 
               
               
                 8924v20141116 
                 Xaa-Pro 
                 259 
                 259 
                 1317 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 aminopeptidase 
               
               
                 8925v20141116 
                 hypothetical protein 
                 260 
                 260 
                 1318 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 8933v20141116 
                 multi-sensor signal 
                 267 
                 267 
                 1320 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 transduction histidine 
               
               
                   
                 kinase 
               
               
                 8938v20141116 
                 endoribonuclease L- 
                 268 
                 268 
                 1321 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 PSP 
               
               
                 8940v20141116 
                 hypothetical protein 
                 269 
                 269 
                 1322 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 8941v20141116 
                 hypothetical protein 
                 1323 
                 270 
                 1323 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 8947v20141116 
                 hypothetical protein 
                 1324 
                 271 
                 1324 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 8949v20141116 
                 hypothetical protein 
                 272 
                 272 
                 1325 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 Mnod_5935 
               
               
                 8963v20141116 
                 ATPase AAA 
                 4207 
                 NA 
                 1328 
                 NA 
                 NA 
                 NA 
                 4207 
               
               
                 8968v20141116 
                 None 
                 4208 
                 NA 
                 1330 
                 NA 
                 NA 
                 NA 
                 4208 
               
               
                 8975v20141116 
                 two component LuxR 
                 1333 
                 NA 
                 1333 
                 NA 
                 NA 
                 NA 
                 4209 
               
               
                   
                 family transcriptional 
               
               
                   
                 regulator 
               
               
                 9009v20141116 
                 LysR family 
                 2270 
                 NA 
                 NA 
                 2270 
                 NA 
                 3651 
                 NA 
               
               
                   
                 transcriptional 
               
               
                   
                 regulator 
               
               
                 9033v20141116 
                 cobyrinic acid ac- 
                 2975 
                 NA 
                 NA 
                 NA 
                 2975 
                 NA 
                 4211 
               
               
                   
                 diamide synthase 
               
               
                 9049v20141116 
                 hypothetical protein 
                 2272 
                 NA 
                 NA 
                 2272 
                 2977 
                 NA 
                 NA 
               
               
                   
                 Mrad2831_5209 
               
               
                 9054v20141116 
                 hypothetical protein 
                 3656 
                 NA 
                 NA 
                 NA 
                 NA 
                 3656 
                 4213 
               
               
                   
                 MexAM1_META1p1280 
               
               
                 9082v20141116 
                 None 
                 2273 
                 NA 
                 NA 
                 2273 
                 NA 
                 NA 
                 4214 
               
               
                 9083v20141116 
                 hypothetical protein 
                 2274 
                 NA 
                 NA 
                 2274 
                 NA 
                 NA 
                 4215 
               
               
                 9087v20141116 
                 short-chain 
                 4216 
                 NA 
                 NA 
                 2275 
                 NA 
                 NA 
                 4216 
               
               
                   
                 dehydrogenase 
               
               
                 9112v20141116 
                 hypothetical protein 
                 4221 
                 NA 
                 NA 
                 NA 
                 NA 
                 3659 
                 4221 
               
               
                 9113v20141116 
                 hypothetical protein 
                 3660 
                 NA 
                 NA 
                 NA 
                 NA 
                 3660 
                 4222 
               
               
                 9114v20141116 
                 tricarboxylate 
                 4223 
                 NA 
                 NA 
                 NA 
                 NA 
                 3661 
                 4223 
               
               
                   
                 transporter 
               
               
                 9117v20141116 
                 hypothetical protein 
                 2981 
                 NA 
                 NA 
                 NA 
                 2981 
                 NA 
                 4225 
               
               
                   
                 Mchl_5371 
               
               
                 9125v20141116 
                 hypothetical protein 
                 2986 
                 NA 
                 NA 
                 NA 
                 2986 
                 3662 
                 NA 
               
               
                   
                 Mchl_0715 
               
               
                 9136v20141116 
                 hypothetical protein 
                 3663 
                 NA 
                 NA 
                 NA 
                 NA 
                 3663 
                 4235 
               
               
                   
                 Mnod_6346 
               
               
                 9205v20141116 
                 hypothetical protein 
                 276 
                 276 
                 1334 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 9230v20141116 
                 acetyl-CoA 
                 278 
                 278 
                 1336 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 acetyltransferase 
               
               
                 9241v20141116 
                 hypothetical protein 
                 279 
                 279 
                 1338 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 9245v20141116 
                 family 1 extracellular 
                 281 
                 281 
                 1339 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 solute-binding protein 
               
               
                 9247v20141116 
                 two-component sensor 
                 282 
                 282 
                 1340 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 histidine kinase 
               
               
                 9254v20141116 
                 carboxymethylenebutenolidase 
                 283 
                 283 
                 1342 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 9257v20141116 
                 hypothetical protein 
                 284 
                 284 
                 1343 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 9260v20141116 
                 beta-lactamase 
                 285 
                 285 
                 1344 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 domain-containing 
               
               
                   
                 protein 
               
               
                 9261v20141116 
                 nucleotide sugar 
                 286 
                 286 
                 1345 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 dehydrogenase 
               
               
                 9268v20141116 
                 carbon monoxide 
                 287 
                 287 
                 1346 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 dehydrogenase 
               
               
                 9269v20141116 
                 hypothetical protein 
                 288 
                 288 
                 1347 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 9270v20141116 
                 peptidase M19 
                 289 
                 289 
                 1348 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 9271v20141116 
                 hypothetical protein 
                 1349 
                 290 
                 1349 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 9278v20141116 
                 hypothetical protein 
                 294 
                 294 
                 1353 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 9281v20141116 
                 glycosyl transferase 
                 296 
                 296 
                 1355 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 family 1 
               
               
                 9282v20141116 
                 substrate-binding 
                 297 
                 297 
                 NA 
                 2280 
                 NA 
                 NA 
                 NA 
               
               
                   
                 protein 
               
               
                 9283v20141116 
                 integral membrane 
                 1356 
                 298 
                 1356 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 sensor hybrid histidine 
               
               
                   
                 kinase 
               
               
                 9284v20141116 
                 acyltransferase 3 
                 299 
                 299 
                 1357 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 9290v20141116 
                 diguanylate cyclase 
                 300 
                 300 
                 NA 
                 NA 
                 NA 
                 NA 
                 4245 
               
               
                 9291v20141116 
                 hypothetical protein 
                 301 
                 301 
                 NA 
                 2281 
                 NA 
                 NA 
                 NA 
               
               
                 9292v20141116 
                 hypothetical protein 
                 302 
                 302 
                 NA 
                 2282 
                 NA 
                 NA 
                 NA 
               
               
                 9295v20141116 
                 hypothetical protein 
                 303 
                 303 
                 1358 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 9297v20141116 
                 hypothetical protein 
                 1359 
                 304 
                 1359 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 9298v20141116 
                 hypothetical protein 
                 306 
                 306 
                 1360 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 Mrad2831_0240 
               
               
                 9300v20141116 
                 nitrate ABC transporter 
                 307 
                 307 
                 1361 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 ATP-binding protein 
               
               
                 9309v20141116 
                 XRE family 
                 4246 
                 310 
                 NA 
                 NA 
                 NA 
                 NA 
                 4246 
               
               
                   
                 transcriptional 
               
               
                   
                 regulator 
               
               
                 9311v20141116 
                 Hypothetical protein 
                 311 
                 311 
                 1362 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 9313v20141116 
                 hypothetical protein 
                 1363 
                 312 
                 1363 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 9315v20141116 
                 hypothetical protein 
                 313 
                 313 
                 1364 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 9321v20141116 
                 nucleotidyltransferase 
                 315 
                 315 
                 1366 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 9331v20141116 
                 PadR family 
                 317 
                 317 
                 1368 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 transcriptional 
               
               
                   
                 regulator 
               
               
                 9347v20141116 
                 ABC transporter inner 
                 2994 
                 NA 
                 1373 
                 NA 
                 2994 
                 NA 
                 NA 
               
               
                   
                 membrane protein 
               
               
                 9348v20141116 
                 hypothetical protein 
                 4247 
                 NA 
                 1374 
                 NA 
                 NA 
                 NA 
                 4247 
               
               
                 9467v20141116 
                 hypothetical protein 
                 2287 
                 NA 
                 NA 
                 2287 
                 NA 
                 NA 
                 4253 
               
               
                 9504v20141116 
                 hypothetical protein 
                 3674 
                 NA 
                 NA 
                 NA 
                 3007 
                 3674 
                 NA 
               
               
                   
                 Mnod_4882 
               
               
                 9669v20141116 
                 Hypothetical protein 
                 1376 
                 319 
                 1376 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 9675v20141116 
                 conserved hypothetical 
                 3017 
                 NA 
                 NA 
                 NA 
                 3017 
                 3676 
                 NA 
               
               
                   
                 protein 
               
               
                 9680v20141116 
                 NUDIX hydrolase 
                 322 
                 322 
                 1377 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 9687v20141116 
                 polysaccharide 
                 323 
                 323 
                 1378 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 biosynthesis protein 
               
               
                 9689v20141116 
                 fumarylacetoacetate 
                 324 
                 324 
                 1380 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 (FAA) hydrolase 
               
               
                 9690v20141116 
                 hypothetical protein 
                 325 
                 325 
                 1381 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 Mrad2831_3421 
               
               
                 9692v20141116 
                 muconolactone delta- 
                 327 
                 327 
                 1382 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 isomerase 
               
               
                 9693v20141116 
                 shkimate 
                 328 
                 328 
                 1383 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 dehydrogenase 
               
               
                 9694v20141116 
                 alcohol dehydrogenase 
                 329 
                 329 
                 1384 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 9695v20141116 
                 TadE family protein 
                 330 
                 330 
                 1385 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 9696v20141116 
                 hypothetical protein 
                 331 
                 331 
                 1386 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 9698v20141116 
                 hypothetical protein 
                 332 
                 332 
                 1388 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 9701v20141116 
                 membrane protein 
                 333 
                 333 
                 1389 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 9702v20141116 
                 MFS transporter 
                 334 
                 334 
                 1390 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 9703v20141116 
                 Transcriptional 
                 335 
                 335 
                 1391 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 regulator GntR family 
               
               
                 9707v20141116 
                 hypothetical protein 
                 336 
                 336 
                 1392 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 9708v20141116 
                 phosphate ABC 
                 337 
                 337 
                 1393 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 transporter substrate- 
               
               
                   
                 binding protein 
               
               
                 9709v20141116 
                 ferredoxin 
                 338 
                 338 
                 1394 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 9710v20141116 
                 hypothetical protein 
                 339 
                 339 
                 1395 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 Mrad2831_0220 
               
               
                 9712v20141116 
                 hypothetical protein 
                 340 
                 340 
                 1396 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 9717v20141116 
                 GntR family 
                 1397 
                 342 
                 1397 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 transcriptional 
               
               
                   
                 regulator 
               
               
                 9718v20141116 
                 hypothetical protein 
                 1398 
                 343 
                 1398 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 9719v20141116 
                 monooxygenase FAD- 
                 344 
                 344 
                 1400 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 binding protein 
               
               
                 9720v20141116 
                 hypothetical protein 
                 345 
                 345 
                 1401 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 Mrad2831_1283 
               
               
                 9725v20141116 
                 hypothetical protein 
                 1402 
                 347 
                 1402 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 9727v20141116 
                 hypothetical protein 
                 348 
                 348 
                 1403 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 9728v20141116 
                 hypothetical protein 
                 349 
                 349 
                 1404 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 9730v20141116 
                 hypothetical protein 
                 350 
                 350 
                 1405 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 9731v20141116 
                 amidase 
                 351 
                 351 
                 1406 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 9732v20141116 
                 hypothetical protein 
                 352 
                 352 
                 1407 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 9735v20141116 
                 hypothetical protein 
                 353 
                 353 
                 1408 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 9736v20141116 
                 methyl-accepting 
                 1409 
                 NA 
                 1409 
                 NA 
                 NA 
                 NA 
                 4279 
               
               
                   
                 chemotaxis protein 
               
               
                 9739v20141116 
                 hypothetical protein 
                 354 
                 354 
                 1410 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 9744v20141116 
                 hypothetical protein 
                 355 
                 355 
                 1411 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 9745v20141116 
                 alpha/beta hydrolase 
                 356 
                 356 
                 1413 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 fold protein 
               
               
                 9749v20141116 
                 hypothetical protein 
                 357 
                 357 
                 1414 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 Mrad2831_1349 
               
               
                 9750v20141116 
                 carbon monoxide 
                 358 
                 358 
                 1415 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 dehydrogenase 
               
               
                 9751v20141116 
                 hypothetical protein 
                 1416 
                 359 
                 1416 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 9752v20141116 
                 glyoxalase 
                 360 
                 360 
                 1417 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 9754v20141116 
                 hypothetical protein 
                 1418 
                 361 
                 1418 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 9759v20141116 
                 hypothetical protein 
                 366 
                 366 
                 NA 
                 2291 
                 NA 
                 NA 
                 NA 
               
               
                 9761v20141116 
                 UDP-glucose 6- 
                 367 
                 367 
                 1420 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 dehydrogenase 
               
               
                 9763v20141116 
                 Hypothetical protein 
                 369 
                 369 
                 1421 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 9766v20141116 
                 LysR family 
                 370 
                 370 
                 1422 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 transcriptional 
               
               
                   
                 regulator 
               
               
                 9769v20141116 
                 glutathione S- 
                 371 
                 371 
                 1423 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 transferase 
               
               
                 9776v20141116 
                 hypothetical protein 
                 4282 
                 NA 
                 NA 
                 NA 
                 3019 
                 NA 
                 4282 
               
               
                   
                 Msil_2170 
               
               
                 9778v20141116 
                 peptidase S8 
                 1425 
                 375 
                 1425 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 9787v20141116 
                 LuxR family 
                 377 
                 377 
                 1427 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 transcriptional 
               
               
                   
                 regulator 
               
               
                 9789v20141116 
                 hypothetical protein 
                 378 
                 378 
                 1428 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 9790v20141116 
                 hypothetical protein 
                 379 
                 379 
                 1429 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 9791v20141116 
                 hypothetical protein 
                 380 
                 380 
                 1430 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 9796v20141116 
                 cyclic nucleotide- 
                 1431 
                 382 
                 1431 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 binding protein 
               
               
                 9802v20141116 
                 hypothetical protein 
                 3679 
                 NA 
                 1432 
                 NA 
                 NA 
                 3679 
                 NA 
               
               
                   
                 Mrad2831_5170 
               
               
                 9804v20141116 
                 Holliday junction ATP- 
                 4283 
                 NA 
                 1433 
                 NA 
                 NA 
                 NA 
                 4283 
               
               
                   
                 dependent DNA 
               
               
                   
                 helicase 
               
               
                 9989v20141116 
                 Hypothetical protein 
                 2297 
                 NA 
                 NA 
                 2297 
                 NA 
                 NA 
                 4288 
               
               
                 10005v20141116 
                 Hypothetical protein 
                 4289 
                 NA 
                 NA 
                 NA 
                 NA 
                 3684 
                 4289 
               
               
                 10053v20141116 
                 hypothetical protein 
                 3033 
                 NA 
                 NA 
                 NA 
                 3033 
                 3690 
                 NA 
               
               
                   
                 Mchl_4474 
               
               
                 10058v20141116 
                 hypothetical protein 
                 3039 
                 NA 
                 NA 
                 NA 
                 3039 
                 NA 
                 4296 
               
               
                   
                 Mnod_7738 
               
               
                 10065v20141116 
                 NAD-dependent malic 
                 4302 
                 NA 
                 NA 
                 NA 
                 NA 
                 3691 
                 4302 
               
               
                   
                 enzyme mitochondrial 
               
               
                 10194v20141116 
                 RTX toxins and related 
                 385 
                 385 
                 NA 
                 NA 
                 NA 
                 NA 
                 4331 
               
               
                   
                 Ca2+-binding protein 
               
               
                 10195v20141116 
                 hypothetical protein 
                 386 
                 386 
                 1440 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 10216v20141116 
                 hypothetical protein 
                 388 
                 388 
                 1442 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 10219v20141116 
                 hypothetical protein 
                 390 
                 390 
                 1443 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 10247v20141116 
                 hypothetical protein 
                 395 
                 395 
                 1450 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 10250v20141116 
                 hypothetical protein 
                 1451 
                 397 
                 1451 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 10251v20141116 
                 hypothetical protein 
                 398 
                 398 
                 1452 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 10252v20141116 
                 hypothetical protein 
                 399 
                 399 
                 1453 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 10253v20141116 
                 histidine kinase 
                 400 
                 400 
                 1454 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 10254v20141116 
                 hypothetical protein 
                 401 
                 401 
                 1455 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 Mnod_1661 
               
               
                 10255v20141116 
                 peroxidase 
                 402 
                 402 
                 1456 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 10256v20141116 
                 sn-glycerol-3- 
                 1457 
                 403 
                 1457 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 phosphate transporter 
               
               
                 10257v20141116 
                 hypothetical protein 
                 1458 
                 404 
                 1458 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 10258v20141116 
                 acyl-CoA 
                 405 
                 405 
                 1459 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 dehydrogenase 
               
               
                 10259v20141116 
                 IclR family 
                 406 
                 406 
                 1460 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 transcriptional 
               
               
                   
                 regulator 
               
               
                 10260v20141116 
                 aldehyde 
                 407 
                 407 
                 1461 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 dehydrogenase 
               
               
                 10261v20141116 
                 Dihydrodipicolinate 
                 408 
                 408 
                 1462 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 synthase 
               
               
                 10264v20141116 
                 hypothetical protein 
                 410 
                 410 
                 1464 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 10265v20141116 
                 None 
                 411 
                 411 
                 1465 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 10266v20141116 
                 hypothetical protein 
                 412 
                 412 
                 1466 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 10268v20141116 
                 hypothetical protein 
                 413 
                 413 
                 1467 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 Atu3845 
               
               
                 10269v20141116 
                 hypothetical protein 
                 414 
                 414 
                 1468 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 10272v20141116 
                 hypothetical protein 
                 1469 
                 415 
                 1469 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 10277v20141116 
                 TetR family 
                 417 
                 417 
                 1470 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 transcriptional 
               
               
                   
                 regulator 
               
               
                 10278v20141116 
                 hypothetical protein 
                 418 
                 418 
                 1471 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 10280v20141116 
                 hypothetical protein 
                 1473 
                 420 
                 1473 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 MexAM1_META2p1146 
               
               
                 10282v20141116 
                 hypothetical protein 
                 421 
                 421 
                 1474 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 Mrad2831_4849 
               
               
                 10283v20141116 
                 citrate synthase 
                 422 
                 422 
                 1475 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 10284v20141116 
                 oxidoreductase 
                 423 
                 423 
                 1476 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 10285v20141116 
                 hypothetical protein 
                 424 
                 424 
                 1477 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 10286v20141116 
                 hypothetical protein 
                 1478 
                 425 
                 1478 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 10287v20141116 
                 major facilitator 
                 426 
                 426 
                 1479 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 superfamily protein 
               
               
                 10290v20141116 
                 hypothetical protein 
                 1480 
                 427 
                 1480 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 10291v20141116 
                 MFS transporter 
                 428 
                 428 
                 1481 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 10292v20141116 
                 aldehyde 
                 429 
                 429 
                 1482 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 dehydrogenase 
               
               
                 10293v20141116 
                 GntR family 
                 430 
                 430 
                 1483 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 transcriptional 
               
               
                   
                 regulator 
               
               
                 10294v20141116 
                 thioesterase 
                 431 
                 431 
                 1484 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 10295v20141116 
                 hypothetical protein 
                 432 
                 432 
                 1485 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 10296v20141116 
                 hypothetical protein 
                 433 
                 433 
                 1486 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 10298v20141116 
                 hypothetical protein 
                 1487 
                 434 
                 1487 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 10299v20141116 
                 hypothetical protein 
                 435 
                 435 
                 1488 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 10300v20141116 
                 MFS transporter 
                 436 
                 436 
                 1489 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 10301v20141116 
                 crotonase 
                 437 
                 437 
                 1490 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 10302v20141116 
                 AMP-dependent 
                 438 
                 438 
                 1491 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 synthetase and ligase 
               
               
                 10303v20141116 
                 (2Fe—2S)-binding 
                 439 
                 439 
                 1492 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 domain-containing 
               
               
                   
                 protein 
               
               
                 10304v20141116 
                 transcriptional 
                 440 
                 440 
                 1493 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 regulator 
               
               
                 10305v20141116 
                 hydrolase 
                 441 
                 441 
                 1494 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 10306v20141116 
                 twin-arginine 
                 1495 
                 442 
                 1495 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 translocation pathway 
               
               
                   
                 signal 
               
               
                 10307v20141116 
                 hypothetical protein 
                 443 
                 443 
                 1496 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 10309v20141116 
                 hypothetical protein 
                 444 
                 444 
                 1497 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 10310v20141116 
                 hypothetical protein 
                 445 
                 445 
                 1498 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 10313v20141116 
                 hypothetical protein 
                 446 
                 446 
                 1499 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 10315v20141116 
                 hypothetical protein 
                 1500 
                 447 
                 1500 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 10316v20141116 
                 group 1 glycosyl 
                 448 
                 448 
                 1501 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 transferase 
               
               
                 10317v20141116 
                 group 1 glycosyl 
                 449 
                 449 
                 1502 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 transferase 
               
               
                 10318v20141116 
                 non-specific protein- 
                 450 
                 450 
                 1503 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 tyrosine kinase 
               
               
                 10319v20141116 
                 hypothetical protein 
                 1504 
                 451 
                 1504 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 10323v20141116 
                 AraC family 
                 452 
                 452 
                 NA 
                 2306 
                 NA 
                 NA 
                 NA 
               
               
                   
                 transcriptional 
               
               
                   
                 regulator 
               
               
                 10324v20141116 
                 hypothetical protein 
                 2307 
                 453 
                 NA 
                 2307 
                 NA 
                 NA 
                 NA 
               
               
                 10326v20141116 
                 aminotransferase class 
                 2308 
                 454 
                 NA 
                 2308 
                 NA 
                 NA 
                 NA 
               
               
                   
                 I/II 
               
               
                 10328v20141116 
                 hypothetical protein 
                 455 
                 455 
                 1506 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 10331v20141116 
                 acyl-CoA 
                 458 
                 458 
                 1508 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 dehydrogenase 
               
               
                 10334v20141116 
                 hypothetical protein 
                 459 
                 459 
                 1509 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 10335v20141116 
                 hypothetical protein 
                 460 
                 460 
                 NA 
                 NA 
                 NA 
                 NA 
                 4342 
               
               
                   
                 Mnod_7733 
               
               
                 10337v20141116 
                 hypothetical protein 
                 1510 
                 462 
                 1510 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 10341v20141116 
                 glyoxalase/bleomycin 
                 463 
                 463 
                 1511 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 resistance 
               
               
                   
                 protein/dioxygenase 
               
               
                 10343v20141116 
                 CitMHS family 
                 1512 
                 464 
                 1512 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 citrate/H+ symporter 
               
               
                 10344v20141116 
                 ABC transporter 
                 465 
                 465 
                 1513 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 substrate-binding 
               
               
                   
                 protein 
               
               
                 10345v20141116 
                 beta-lactamase 
                 466 
                 466 
                 1514 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 10346v20141116 
                 endoribonuclease L- 
                 1515 
                 467 
                 1515 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 PSP 
               
               
                 10347v20141116 
                 hypothetical protein 
                 1516 
                 468 
                 1516 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 Mrad2831_4429 
               
               
                 10349v20141116 
                 hypothetical protein 
                 1518 
                 470 
                 1518 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 10350v20141116 
                 hypothetical protein 
                 1519 
                 471 
                 1519 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 10354v20141116 
                 Hypothetical protein 
                 4343 
                 472 
                 NA 
                 NA 
                 NA 
                 NA 
                 4343 
               
               
                 10356v20141116 
                 Hypothetical protein 
                 473 
                 473 
                 1520 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 10358v20141116 
                 hypothetical protein 
                 474 
                 474 
                 NA 
                 NA 
                 NA 
                 NA 
                 4345 
               
               
                 10361v20141116 
                 hypothetical protein 
                 1522 
                 NA 
                 1522 
                 NA 
                 NA 
                 NA 
                 4346 
               
               
                   
                 Mrad2831_5665 
               
               
                 10655v20141116 
                 hypothetical protein 
                 2312 
                 NA 
                 NA 
                 2312 
                 3049 
                 NA 
                 NA 
               
               
                 10656v20141116 
                 hypothetical protein 
                 2313 
                 NA 
                 NA 
                 2313 
                 3050 
                 NA 
                 NA 
               
               
                   
                 Mrad2831_5208 
               
               
                 10675v20141116 
                 transposase 
                 3697 
                 NA 
                 NA 
                 2314 
                 NA 
                 3697 
                 NA 
               
               
                 10688v20141116 
                 None 
                 2316 
                 NA 
                 NA 
                 2316 
                 NA 
                 NA 
                 4354 
               
               
                 10941v20141116 
                 hypothetical protein 
                 1529 
                 475 
                 1529 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 10942v20141116 
                 peptidoglycan-binding 
                 478 
                 478 
                 1530 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 protein 
               
               
                 10980v20141116 
                 hypothetical protein 
                 1534 
                 479 
                 1534 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 10994v20141116 
                 hypothetical protein 
                 1535 
                 480 
                 1535 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 10999v20141116 
                 hypothetical protein 
                 482 
                 482 
                 1536 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11000v20141116 
                 hypothetical protein 
                 483 
                 483 
                 1537 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11001v20141116 
                 ABC transporter 
                 484 
                 484 
                 1538 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 permease 
               
               
                 11002v20141116 
                 hypothetical protein 
                 485 
                 485 
                 1539 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11003v20141116 
                 3-ketoacyl-ACP 
                 486 
                 486 
                 1540 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 reductase 
               
               
                 11004v20141116 
                 branched-chain amino 
                 487 
                 487 
                 1541 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 acid ABC transporter 
               
               
                   
                 ATP-binding protein 
               
               
                 11005v20141116 
                 NADPH quinone 
                 488 
                 488 
                 1542 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 oxidoreductase 
               
               
                 11006v20141116 
                 hypothetical protein 
                 489 
                 489 
                 1543 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11007v20141116 
                 hypothetical protein 
                 490 
                 490 
                 1544 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11008v20141116 
                 aliphatic amidase 
                 491 
                 491 
                 1545 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 expression-regulating 
               
               
                   
                 protein AmiC 
               
               
                 11009v20141116 
                 hypothetical protein 
                 492 
                 492 
                 1546 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11010v20141116 
                 short-chain 
                 493 
                 493 
                 1547 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 dehydrogenase/reductase SDR 
               
               
                 11013v20141116 
                 hypothetical protein 
                 494 
                 494 
                 1548 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11014v20141116 
                 hypothetical protein 
                 495 
                 495 
                 1549 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11015v20141116 
                 hypothetical protein 
                 496 
                 496 
                 1550 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11016v20141116 
                 ECF subfamily RNA 
                 497 
                 497 
                 1551 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 polymerase sigma-24 
               
               
                   
                 factor 
               
               
                 11019v20141116 
                 major facilitator 
                 498 
                 498 
                 1552 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 transporter 
               
               
                 11022v20141116 
                 hypothetical protein 
                 499 
                 499 
                 1553 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 Mrad2831_2880 
               
               
                 11023v20141116 
                 hypothetical protein 
                 1554 
                 500 
                 1554 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11024v20141116 
                 hypothetical protein 
                 501 
                 501 
                 1555 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11025v20141116 
                 hypothetical protein 
                 502 
                 502 
                 1556 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11026v20141116 
                 None 
                 503 
                 503 
                 1557 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11027v20141116 
                 helicase 
                 504 
                 504 
                 1558 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11029v20141116 
                 Hypothetical protein 
                 1559 
                 506 
                 1559 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11030v20141116 
                 hypothetical protein 
                 1560 
                 507 
                 1560 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11031v20141116 
                 hypothetical protein 
                 508 
                 508 
                 1561 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 Mrad2831_3995 
               
               
                 11032v20141116 
                 hypothetical protein 
                 509 
                 509 
                 1562 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11033v20141116 
                 hypothetical protein 
                 510 
                 510 
                 1563 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11034v20141116 
                 hypothetical protein 
                 511 
                 511 
                 1564 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11035v20141116 
                 fatty acid hydroxylase 
                 512 
                 512 
                 1565 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11036v20141116 
                 DNA-binding two- 
                 513 
                 513 
                 1566 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 component response 
               
               
                   
                 regulator 
               
               
                 11037v20141116 
                 hypothetical protein 
                 514 
                 514 
                 1567 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11038v20141116 
                 hypothetical protein 
                 515 
                 515 
                 1568 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11040v20141116 
                 hypothetical protein 
                 516 
                 516 
                 1569 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 Mrad2831_4848 
               
               
                 11041v20141116 
                 hypothetical protein 
                 517 
                 517 
                 1570 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 Mrad2831_4850 
               
               
                 11042v20141116 
                 AraC family 
                 518 
                 518 
                 1571 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 transcriptional 
               
               
                   
                 regulator 
               
               
                 11043v20141116 
                 MucR family 
                 1572 
                 519 
                 1572 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 transcriptional 
               
               
                   
                 regulator 
               
               
                 11044v20141116 
                 hypothetical protein 
                 520 
                 520 
                 1573 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11045v20141116 
                 hypothetical protein 
                 521 
                 521 
                 1574 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11046v20141116 
                 hypothetical protein 
                 522 
                 522 
                 1575 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11047v20141116 
                 hypothetical protein 
                 523 
                 523 
                 1576 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 Mrad2831_4872 
               
               
                 11048v20141116 
                 MucR family 
                 524 
                 524 
                 1577 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 transcriptional 
               
               
                   
                 regulator 
               
               
                 11049v20141116 
                 hypothetical protein 
                 525 
                 525 
                 1578 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11050v20141116 
                 hypothetical protein 
                 526 
                 526 
                 1579 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11051v20141116 
                 hypothetical protein 
                 1580 
                 527 
                 1580 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11053v20141116 
                 hypothetical protein 
                 528 
                 528 
                 1581 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11055v20141116 
                 hypothetical protein 
                 529 
                 529 
                 1582 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11056v20141116 
                 hypothetical protein 
                 530 
                 530 
                 1583 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11058v20141116 
                 CDP-diacylglycerol 
                 531 
                 531 
                 1584 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 diphosphatase 
               
               
                 11059v20141116 
                 hypothetical protein 
                 532 
                 532 
                 1585 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11060v20141116 
                 hypothetical protein 
                 533 
                 533 
                 1586 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11062v20141116 
                 hypothetical protein 
                 534 
                 534 
                 1587 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11065v20141116 
                 hypothetical protein 
                 1588 
                 535 
                 1588 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 Mrad2831_4173 
               
               
                 11066v20141116 
                 hypothetical protein 
                 536 
                 536 
                 1589 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11067v20141116 
                 hypothetical protein 
                 1590 
                 537 
                 1590 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11068v20141116 
                 hypothetical protein 
                 538 
                 538 
                 1591 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11069v20141116 
                 hypothetical protein 
                 539 
                 539 
                 1592 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11071v20141116 
                 hypothetical protein 
                 540 
                 540 
                 1593 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11072v20141116 
                 hypothetical protein 
                 541 
                 541 
                 1594 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11073v20141116 
                 hypothetical protein 
                 542 
                 542 
                 1595 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11074v20141116 
                 hypothetical protein 
                 543 
                 543 
                 1596 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 Mrad2831_2451 
               
               
                 11075v20141116 
                 hypothetical protein 
                 1597 
                 544 
                 1597 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11077v20141116 
                 hypothetical protein 
                 545 
                 545 
                 1598 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 Mrad2831_4594 
               
               
                 11078v20141116 
                 hypothetical protein 
                 546 
                 546 
                 1599 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 Mrad2831_4604 
               
               
                 11079v20141116 
                 hypothetical protein 
                 547 
                 547 
                 1600 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11082v20141116 
                 hypothetical protein 
                 548 
                 548 
                 1601 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11083v20141116 
                 hypothetical protein 
                 549 
                 549 
                 1602 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11085v20141116 
                 hypothetical protein 
                 550 
                 550 
                 1603 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11086v20141116 
                 methyl-accepting 
                 1604 
                 551 
                 1604 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 chemotaxis sensory 
               
               
                   
                 transducer 
               
               
                 11087v20141116 
                 hypothetical protein 
                 1605 
                 552 
                 1605 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11090v20141116 
                 hypothetical protein 
                 1606 
                 553 
                 1606 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11091v20141116 
                 hypothetical protein 
                 554 
                 554 
                 1607 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11092v20141116 
                 putative 
                 555 
                 555 
                 1608 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 transmembrane 
               
               
                   
                 protein 
               
               
                 11093v20141116 
                 hypothetical protein 
                 556 
                 556 
                 1609 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 Mrad2831_5620 
               
               
                 11094v20141116 
                 hypothetical protein 
                 557 
                 557 
                 1610 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11095v20141116 
                 hypothetical protein 
                 558 
                 558 
                 1611 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 Mrad2831_5792 
               
               
                 11096v20141116 
                 hypothetical protein 
                 559 
                 559 
                 1612 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11097v20141116 
                 hypothetical protein 
                 560 
                 560 
                 1613 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11098v20141116 
                 hypothetical protein 
                 561 
                 561 
                 1614 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11099v20141116 
                 hypothetical protein 
                 562 
                 562 
                 1615 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11100v20141116 
                 hypothetical protein 
                 563 
                 563 
                 1616 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11101v20141116 
                 hypothetical protein 
                 564 
                 564 
                 1617 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11102v20141116 
                 hypothetical protein 
                 565 
                 565 
                 1618 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11103v20141116 
                 HxlR family 
                 566 
                 566 
                 1619 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 transcriptional 
               
               
                   
                 regulator 
               
               
                 11105v20141116 
                 hypothetical protein 
                 567 
                 567 
                 1620 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 Mrad2831_1263 
               
               
                 11106v20141116 
                 hypothetical protein 
                 568 
                 568 
                 1621 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 Mrad2831_1264 
               
               
                 11108v20141116 
                 hypothetical protein 
                 569 
                 569 
                 1622 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11109v20141116 
                 type III effector Hrp- 
                 570 
                 570 
                 1623 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 dependent protein 
               
               
                 11110v20141116 
                 hypothetical protein 
                 1624 
                 571 
                 1624 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11114v20141116 
                 hypothetical protein 
                 573 
                 573 
                 1625 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11117v20141116 
                 hypothetical protein 
                 574 
                 574 
                 1626 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11118v20141116 
                 hypothetical protein 
                 575 
                 575 
                 1627 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11119v20141116 
                 hypothetical protein 
                 1628 
                 576 
                 1628 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11121v20141116 
                 hypothetical protein 
                 578 
                 578 
                 1630 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11125v20141116 
                 hypothetical protein 
                 581 
                 581 
                 1631 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11126v20141116 
                 hypothetical protein 
                 582 
                 582 
                 1632 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 Mrad2831_4291 
               
               
                 11127v20141116 
                 hypothetical protein 
                 583 
                 583 
                 1633 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11128v20141116 
                 putative aldo/keto 
                 1634 
                 584 
                 1634 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 reductase protein 
               
               
                 11129v20141116 
                 hypothetical protein 
                 585 
                 585 
                 1635 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 Mrad2831_1223 
               
               
                 11130v20141116 
                 hypothetical protein 
                 586 
                 586 
                 1636 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11131v20141116 
                 hypothetical protein 
                 587 
                 587 
                 1637 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11134v20141116 
                 hypothetical protein 
                 589 
                 589 
                 1638 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11136v20141116 
                 hypothetical protein 
                 590 
                 590 
                 1639 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 Mrad2831_4454 
               
               
                 11137v20141116 
                 phosphoglycolate 
                 1640 
                 591 
                 1640 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 phosphatase 
               
               
                 11138v20141116 
                 substrate-binding 
                 592 
                 592 
                 1641 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 protein 
               
               
                 11139v20141116 
                 hypothetical protein 
                 1642 
                 593 
                 1642 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11140v20141116 
                 FAD-dependent 
                 1643 
                 594 
                 1643 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 pyridine nucleotide- 
               
               
                   
                 disulfide 
               
               
                   
                 oxidoreductase 
               
               
                 11141v20141116 
                 hypothetical protein 
                 1644 
                 595 
                 1644 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11142v20141116 
                 5-oxopent-3-ene-1 2 5- 
                 596 
                 596 
                 1645 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 tricarboxylate 
               
               
                   
                 decarboxylase 
               
               
                 11143v20141116 
                 hypothetical protein 
                 1646 
                 597 
                 1646 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 Mrad2831_1904 
               
               
                 11149v20141116 
                 hypothetical protein 
                 600 
                 600 
                 1647 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11150v20141116 
                 hypothetical protein 
                 601 
                 601 
                 1648 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 Mrad2831_1911 
               
               
                 11151v20141116 
                 hypothetical protein 
                 602 
                 602 
                 1649 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11152v20141116 
                 hypothetical protein 
                 603 
                 603 
                 1650 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11153v20141116 
                 hypothetical protein 
                 604 
                 604 
                 1651 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11154v20141116 
                 hypothetical protein 
                 605 
                 605 
                 1652 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11155v20141116 
                 hypothetical protein 
                 606 
                 606 
                 1653 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11156v20141116 
                 methyl-accepting 
                 1654 
                 607 
                 1654 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 chemotaxis sensory 
               
               
                   
                 transducer 
               
               
                 11157v20141116 
                 hypothetical protein 
                 608 
                 608 
                 1655 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11161v20141116 
                 MucR family 
                 610 
                 610 
                 1656 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 transcriptional 
               
               
                   
                 regulator 
               
               
                 11162v20141116 
                 hypothetical protein 
                 611 
                 611 
                 1657 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11164v20141116 
                 hypothetical protein 
                 612 
                 612 
                 1658 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11165v20141116 
                 MarR family 
                 613 
                 613 
                 1659 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 transcriptional 
               
               
                   
                 regulator 
               
               
                 11167v20141116 
                 capsule polysaccharide 
                 614 
                 614 
                 1660 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 transporter 
               
               
                 11168v20141116 
                 hypothetical protein 
                 615 
                 615 
                 1661 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11169v20141116 
                 hypothetical protein 
                 616 
                 616 
                 1662 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11171v20141116 
                 hypothetical protein 
                 617 
                 617 
                 1663 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11172v20141116 
                 hypothetical protein 
                 618 
                 618 
                 1664 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 Mrad2831_1654 
               
               
                 11176v20141116 
                 hypothetical protein 
                 619 
                 619 
                 1665 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11177v20141116 
                 hypothetical protein 
                 620 
                 620 
                 1666 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11178v20141116 
                 hypothetical protein 
                 621 
                 621 
                 1667 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11180v20141116 
                 hypothetical protein 
                 624 
                 624 
                 1668 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11181v20141116 
                 hypothetical protein 
                 625 
                 625 
                 1669 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11182v20141116 
                 hypothetical protein 
                 626 
                 626 
                 1670 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11183v20141116 
                 hypothetical protein 
                 627 
                 627 
                 1671 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11184v20141116 
                 hypothetical protein 
                 1672 
                 628 
                 1672 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11185v20141116 
                 hypothetical protein 
                 1673 
                 629 
                 1673 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11186v20141116 
                 hypothetical protein 
                 630 
                 630 
                 1674 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11187v20141116 
                 hypothetical protein 
                 631 
                 631 
                 1675 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11188v20141116 
                 GntR family 
                 1676 
                 633 
                 1676 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 transcriptional 
               
               
                   
                 regulator 
               
               
                 11189v20141116 
                 hypothetical protein 
                 634 
                 634 
                 1677 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 Mrad2831_2999 
               
               
                 11190v20141116 
                 hypothetical protein 
                 635 
                 635 
                 1678 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11191v20141116 
                 Hypothetical protein 
                 1679 
                 636 
                 1679 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11193v20141116 
                 haloacid dehalogenase 
                 637 
                 637 
                 1680 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11196v20141116 
                 hypothetical protein 
                 1681 
                 638 
                 1681 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11197v20141116 
                 Holliday junction DNA 
                 639 
                 639 
                 1682 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 helicase RuvB 
               
               
                 11198v20141116 
                 hypothetical protein 
                 640 
                 640 
                 1683 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 partial 
               
               
                 11199v20141116 
                 hypothetical protein 
                 641 
                 641 
                 1684 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11200v20141116 
                 hypothetical protein 
                 642 
                 642 
                 1685 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11201v20141116 
                 hypothetical protein 
                 643 
                 643 
                 1686 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11203v20141116 
                 hypothetical protein 
                 1687 
                 644 
                 1687 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 Mrad2831_5411 
               
               
                 11204v20141116 
                 hypothetical protein 
                 645 
                 645 
                 1688 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11206v20141116 
                 glycosyl transferase 
                 1689 
                 646 
                 1689 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 family protein 
               
               
                 11207v20141116 
                 hypothetical protein 
                 1690 
                 647 
                 1690 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 11213v20141116 
                 hypothetical protein 
                 3075 
                 NA 
                 1692 
                 NA 
                 3075 
                 NA 
                 NA 
               
               
                   
                 Mchl_1645 
               
               
                 11233v20141116 
                 None 
                 1706 
                 NA 
                 1706 
                 NA 
                 NA 
                 NA 
                 4407 
               
               
                 11447v20141116 
                 None 
                 3088 
                 NA 
                 NA 
                 NA 
                 3088 
                 3711 
                 NA 
               
               
                 11497v20141116 
                 None 
                 2323 
                 NA 
                 NA 
                 2323 
                 NA 
                 NA 
                 4420 
               
               
                 11506v20141116 
                 amidase 
                 2324 
                 NA 
                 NA 
                 2324 
                 NA 
                 NA 
                 4422 
               
               
                 11507v20141116 
                 ABC transporter ATP- 
                 4423 
                 NA 
                 NA 
                 2325 
                 NA 
                 NA 
                 4423 
               
               
                   
                 binding protein 
               
               
                 11508v20141116 
                 nitrate/sulfonate/bicarbonate 
                 4424 
                 NA 
                 NA 
                 2326 
                 NA 
                 NA 
                 4424 
               
               
                   
                 ABC transporter 
               
               
                   
                 periplasmic protein 
               
               
                 11511v20141116 
                 None 
                 4425 
                 NA 
                 NA 
                 2327 
                 NA 
                 NA 
                 4425 
               
               
                 11576v20141116 
                 hypothetical protein 
                 3103 
                 NA 
                 NA 
                 NA 
                 3103 
                 NA 
                 4436 
               
               
                 12016v20141116 
                 hypothetical protein 
                 1708 
                 651 
                 1708 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12018v20141116 
                 hypothetical protein 
                 653 
                 653 
                 1709 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12020v20141116 
                 hypothetical protein 
                 654 
                 654 
                 1710 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12021v20141116 
                 transcriptional 
                 655 
                 655 
                 1711 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 regulator 
               
               
                 12022v20141116 
                 hypothetical protein 
                 656 
                 656 
                 1712 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 Mrad2831_0355 
               
               
                 12025v20141116 
                 hypothetical protein 
                 658 
                 658 
                 1713 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12026v20141116 
                 hypothetical protein 
                 659 
                 659 
                 1714 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12027v20141116 
                 hypothetical protein 
                 660 
                 660 
                 1715 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12028v20141116 
                 hypothetical protein 
                 661 
                 661 
                 1716 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12029v20141116 
                 hypothetical protein 
                 662 
                 662 
                 1717 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12030v20141116 
                 hypothetical protein 
                 663 
                 663 
                 1718 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12031v20141116 
                 hypothetical protein 
                 664 
                 664 
                 1719 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12032v20141116 
                 hypothetical protein 
                 665 
                 665 
                 1720 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12033v20141116 
                 hypothetical protein 
                 666 
                 666 
                 1721 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12034v20141116 
                 MFS transporter 
                 667 
                 667 
                 1722 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12035v20141116 
                 3-hydroxyisobutyrate 
                 668 
                 668 
                 1723 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 dehydrogenase 
               
               
                 12036v20141116 
                 gamma- 
                 669 
                 669 
                 1724 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 carboxymuconolactone 
               
               
                   
                 decarboxylase 
               
               
                 12037v20141116 
                 None 
                 670 
                 670 
                 1725 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12039v20141116 
                 hypothetical protein 
                 671 
                 671 
                 1726 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12040v20141116 
                 hypothetical protein 
                 1727 
                 672 
                 1727 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12041v20141116 
                 None 
                 673 
                 673 
                 1728 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12043v20141116 
                 None 
                 674 
                 674 
                 1729 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12044v20141116 
                 None 
                 675 
                 675 
                 1730 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12045v20141116 
                 None 
                 676 
                 676 
                 1731 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12046v20141116 
                 None 
                 677 
                 677 
                 1732 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12047v20141116 
                 None 
                 678 
                 678 
                 1733 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12048v20141116 
                 None 
                 679 
                 679 
                 1734 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12049v20141116 
                 hypothetical protein 
                 680 
                 680 
                 1735 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12050v20141116 
                 hypothetical protein 
                 681 
                 681 
                 1736 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12051v20141116 
                 None 
                 682 
                 682 
                 1737 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12052v20141116 
                 None 
                 683 
                 683 
                 1738 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12053v20141116 
                 hypothetical protein 
                 684 
                 684 
                 1739 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12054v20141116 
                 None 
                 685 
                 685 
                 1740 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12055v20141116 
                 hypothetical protein 
                 1741 
                 686 
                 1741 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12056v20141116 
                 hypothetical protein 
                 687 
                 687 
                 1742 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12057v20141116 
                 acetyltransferase 
                 688 
                 688 
                 1743 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 GNAT family 
               
               
                 12058v20141116 
                 hypothetical protein 
                 689 
                 689 
                 1744 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 Msil_3108 
               
               
                 12059v20141116 
                 hypothetical protein 
                 690 
                 690 
                 1745 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12060v20141116 
                 hypothetical protein 
                 691 
                 691 
                 1746 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12061v20141116 
                 None 
                 692 
                 692 
                 1747 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12062v20141116 
                 hypothetical protein 
                 693 
                 693 
                 1748 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12063v20141116 
                 hypothetical protein 
                 694 
                 694 
                 1749 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12064v20141116 
                 hypothetical protein 
                 695 
                 695 
                 1750 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12065v20141116 
                 None 
                 696 
                 696 
                 1751 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12066v20141116 
                 hypothetical protein 
                 697 
                 697 
                 1752 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12067v20141116 
                 hypothetical protein 
                 698 
                 698 
                 1753 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 AZOLI_2591 
               
               
                 12068v20141116 
                 None 
                 699 
                 699 
                 1754 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12071v20141116 
                 None 
                 702 
                 702 
                 NA 
                 NA 
                 NA 
                 NA 
                 4635 
               
               
                 12073v20141116 
                 hypothetical protein 
                 703 
                 703 
                 1755 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12074v20141116 
                 hypothetical protein 
                 704 
                 704 
                 1756 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12076v20141116 
                 hypothetical protein 
                 1757 
                 705 
                 1757 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12077v20141116 
                 cystathionine beta- 
                 706 
                 706 
                 1758 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 lyase 
               
               
                 12078v20141116 
                 hypothetical protein 
                 707 
                 707 
                 1759 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12079v20141116 
                 hypothetical protein 
                 708 
                 708 
                 1760 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12080v20141116 
                 None 
                 709 
                 709 
                 1761 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12081v20141116 
                 prevent-host-death 
                 710 
                 710 
                 1762 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 protein 
               
               
                 12082v20141116 
                 hypothetical protein 
                 711 
                 711 
                 1763 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12083v20141116 
                 ABC transporter 
                 712 
                 712 
                 1764 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 permease 
               
               
                 12085v20141116 
                 None 
                 713 
                 713 
                 1765 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12086v20141116 
                 hypothetical protein 
                 1766 
                 714 
                 1766 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12087v20141116 
                 hypothetical protein 
                 715 
                 715 
                 1767 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12089v20141116 
                 histone 
                 716 
                 716 
                 1768 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 acetyltransferase 
               
               
                 12091v20141116 
                 TetR family 
                 717 
                 717 
                 1769 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 transcriptional 
               
               
                   
                 regulator 
               
               
                 12092v20141116 
                 None 
                 718 
                 718 
                 1770 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12093v20141116 
                 hypothetical protein 
                 1771 
                 719 
                 1771 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12095v20141116 
                 hypothetical protein 
                 720 
                 720 
                 1772 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12097v20141116 
                 hypothetical protein 
                 722 
                 722 
                 1773 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12099v20141116 
                 hypothetical protein 
                 723 
                 723 
                 1774 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 Mrad2831_4561 
               
               
                 12100v20141116 
                 hypothetical protein 
                 724 
                 724 
                 1775 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12103v20141116 
                 endo-1 3-beta- 
                 725 
                 725 
                 1776 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 glucanase 
               
               
                 12104v20141116 
                 hypothetical protein 
                 726 
                 726 
                 1777 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12105v20141116 
                 hypothetical protein 
                 727 
                 727 
                 1778 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12106v20141116 
                 hypothetical protein 
                 728 
                 728 
                 1779 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12107v20141116 
                 hypothetical protein 
                 729 
                 729 
                 1780 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12108v20141116 
                 hypothetical protein 
                 730 
                 730 
                 1781 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12110v20141116 
                 hypothetical protein 
                 1782 
                 731 
                 1782 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12111v20141116 
                 hypothetical protein 
                 732 
                 732 
                 1783 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12112v20141116 
                 hypothetical protein 
                 733 
                 733 
                 1784 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12113v20141116 
                 hypothetical protein 
                 734 
                 734 
                 1785 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12115v20141116 
                 hypothetical protein 
                 735 
                 735 
                 1786 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12116v20141116 
                 hypothetical protein 
                 736 
                 736 
                 1787 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12117v20141116 
                 hypothetical protein 
                 737 
                 737 
                 1788 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 Mrad2831_2464 
               
               
                 12118v20141116 
                 hypothetical protein 
                 738 
                 738 
                 1789 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12119v20141116 
                 hypothetical protein 
                 739 
                 739 
                 1790 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 Mrad2831_4587 
               
               
                 12121v20141116 
                 hypothetical protein 
                 740 
                 740 
                 1791 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 Mrad2831_4596 
               
               
                 12122v20141116 
                 aldehyde 
                 741 
                 741 
                 1792 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 dehydrogenase 
               
               
                 12123v20141116 
                 hypothetical protein 
                 742 
                 742 
                 1793 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12124v20141116 
                 hypothetical protein 
                 743 
                 743 
                 1794 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12125v20141116 
                 transcriptional 
                 744 
                 744 
                 1795 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 regulator 
               
               
                 12126v20141116 
                 hypothetical protein 
                 745 
                 745 
                 1796 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12127v20141116 
                 hypothetical protein 
                 746 
                 746 
                 1797 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12129v20141116 
                 hypothetical protein 
                 747 
                 747 
                 1798 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12130v20141116 
                 coenzyme PQQ 
                 748 
                 748 
                 1799 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 biosynthesis protein A 
               
               
                 12132v20141116 
                 hypothetical protein 
                 749 
                 749 
                 1800 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12133v20141116 
                 None 
                 750 
                 750 
                 1801 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12134v20141116 
                 hypothetical protein 
                 751 
                 751 
                 1802 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12135v20141116 
                 hypothetical protein 
                 752 
                 752 
                 1803 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12136v20141116 
                 hypothetical protein 
                 753 
                 753 
                 1804 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12137v20141116 
                 hypothetical protein 
                 754 
                 754 
                 1805 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12138v20141116 
                 hypothetical protein 
                 755 
                 755 
                 1806 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12140v20141116 
                 hypothetical protein 
                 1807 
                 756 
                 1807 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12141v20141116 
                 Hypothetical protein 
                 757 
                 757 
                 1808 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12142v20141116 
                 hypothetical protein 
                 758 
                 758 
                 1809 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12143v20141116 
                 hypothetical protein 
                 759 
                 759 
                 1810 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12144v20141116 
                 hypothetical protein 
                 760 
                 760 
                 1811 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12145v20141116 
                 hypothetical protein 
                 761 
                 761 
                 1812 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12146v20141116 
                 deaminase reductase 
                 762 
                 762 
                 1813 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12147v20141116 
                 hypothetical protein 
                 763 
                 763 
                 1814 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12149v20141116 
                 hypothetical protein 
                 765 
                 765 
                 1815 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12151v20141116 
                 histidine kinase 
                 767 
                 767 
                 1816 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12152v20141116 
                 hypothetical protein 
                 768 
                 768 
                 1817 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12153v20141116 
                 hypothetical protein 
                 769 
                 769 
                 1818 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12154v20141116 
                 hypothetical protein 
                 770 
                 770 
                 1819 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12155v20141116 
                 hypothetical protein 
                 771 
                 771 
                 1820 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12160v20141116 
                 hypothetical protein 
                 772 
                 772 
                 1821 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12161v20141116 
                 hypothetical protein 
                 4637 
                 773 
                 NA 
                 NA 
                 NA 
                 NA 
                 4637 
               
               
                   
                 MexAM1_META1p3214 
               
               
                 12162v20141116 
                 putative 
                 774 
                 774 
                 1822 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 transmembrane 
               
               
                   
                 protein 
               
               
                 12164v20141116 
                 hypothetical protein 
                 775 
                 775 
                 1823 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12165v20141116 
                 ABC transporter 
                 776 
                 776 
                 NA 
                 2328 
                 NA 
                 NA 
                 NA 
               
               
                   
                 substrate-binding 
               
               
                   
                 protein family 5 
               
               
                 12166v20141116 
                 signal peptide protein 
                 1824 
                 777 
                 1824 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12167v20141116 
                 hypothetical protein 
                 778 
                 778 
                 1825 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12168v20141116 
                 hypothetical protein 
                 779 
                 779 
                 1826 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12169v20141116 
                 hypothetical protein 
                 780 
                 780 
                 1827 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12170v20141116 
                 hypothetical protein 
                 781 
                 781 
                 1828 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12171v20141116 
                 hypothetical protein 
                 782 
                 782 
                 1829 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12172v20141116 
                 hypothetical protein 
                 783 
                 783 
                 1830 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12173v20141116 
                 hypothetical protein 
                 784 
                 784 
                 1831 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12174v20141116 
                 adenylate cyclase 
                 785 
                 785 
                 1832 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12175v20141116 
                 hypothetical protein 
                 786 
                 786 
                 1833 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12176v20141116 
                 hypothetical protein 
                 787 
                 787 
                 1834 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12177v20141116 
                 hypothetical protein 
                 788 
                 788 
                 1835 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 Mrad2831_3657 
               
               
                 12178v20141116 
                 hypothetical protein 
                 789 
                 789 
                 1836 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12179v20141116 
                 hypothetical protein 
                 790 
                 790 
                 1837 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12180v20141116 
                 hypothetical protein 
                 791 
                 791 
                 1838 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12185v20141116 
                 None 
                 793 
                 793 
                 1839 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12186v20141116 
                 hypothetical protein 
                 1840 
                 794 
                 1840 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12187v20141116 
                 hypothetical protein 
                 1841 
                 795 
                 1841 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12189v20141116 
                 hypothetical protein 
                 796 
                 796 
                 1843 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12190v20141116 
                 hypothetical protein 
                 797 
                 797 
                 1844 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12191v20141116 
                 hypothetical protein 
                 1845 
                 798 
                 1845 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12192v20141116 
                 oxidoreductase 
                 799 
                 799 
                 1846 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12193v20141116 
                 hypothetical protein 
                 800 
                 800 
                 1847 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12194v20141116 
                 hypothetical protein 
                 801 
                 801 
                 1848 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12195v20141116 
                 hypothetical protein 
                 1849 
                 802 
                 1849 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12196v20141116 
                 hypothetical protein 
                 803 
                 803 
                 1850 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12197v20141116 
                 hypothetical protein 
                 1851 
                 804 
                 1851 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12198v20141116 
                 porin 
                 1852 
                 805 
                 1852 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12200v20141116 
                 hypothetical protein 
                 1853 
                 806 
                 1853 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12202v20141116 
                 hypothetical protein 
                 807 
                 807 
                 1854 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 Mrad2831_3327 
               
               
                 12207v20141116 
                 hypothetical protein 
                 809 
                 809 
                 1855 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12208v20141116 
                 hypothetical protein 
                 810 
                 810 
                 1856 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12209v20141116 
                 hypothetical protein 
                 811 
                 811 
                 1857 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12210v20141116 
                 hypothetical protein 
                 812 
                 812 
                 1858 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12212v20141116 
                 hypothetical protein 
                 813 
                 813 
                 1859 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12214v20141116 
                 None 
                 814 
                 814 
                 1860 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12217v20141116 
                 hypothetical protein 
                 816 
                 816 
                 1861 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12218v20141116 
                 hypothetical protein 
                 817 
                 817 
                 1862 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12219v20141116 
                 hypothetical protein 
                 818 
                 818 
                 1863 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12220v20141116 
                 RNA polymerase sigma 
                 819 
                 819 
                 1864 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 factor SigJ 
               
               
                 12221v20141116 
                 hypothetical protein 
                 820 
                 820 
                 1865 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12222v20141116 
                 hypothetical protein 
                 1866 
                 821 
                 1866 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12223v20141116 
                 hypothetical protein 
                 822 
                 822 
                 1867 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12226v20141116 
                 hypothetical protein 
                 823 
                 823 
                 1868 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12227v20141116 
                 hypothetical protein 
                 824 
                 824 
                 1869 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12228v20141116 
                 None 
                 825 
                 825 
                 1870 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12230v20141116 
                 hypothetical protein 
                 1871 
                 826 
                 1871 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12231v20141116 
                 hypothetical protein 
                 1872 
                 827 
                 1872 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12232v20141116 
                 None 
                 828 
                 828 
                 1873 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12233v20141116 
                 hypothetical protein 
                 1874 
                 829 
                 1874 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12234v20141116 
                 PAS domain-containing 
                 830 
                 830 
                 1875 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 protein 
               
               
                 12235v20141116 
                 hypothetical protein 
                 1876 
                 831 
                 1876 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12236v20141116 
                 hypothetical protein 
                 832 
                 832 
                 1877 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12237v20141116 
                 None 
                 833 
                 833 
                 1878 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12239v20141116 
                 hypothetical protein 
                 834 
                 834 
                 1879 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12240v20141116 
                 None 
                 835 
                 835 
                 1880 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12241v20141116 
                 hypothetical protein 
                 836 
                 836 
                 1881 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12242v20141116 
                 hypothetical protein 
                 837 
                 837 
                 1882 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12244v20141116 
                 AraC family 
                 838 
                 838 
                 1883 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 transcriptional 
               
               
                   
                 regulator 
               
               
                 12245v20141116 
                 hypothetical protein 
                 839 
                 839 
                 1884 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12246v20141116 
                 hypothetical protein 
                 1885 
                 840 
                 1885 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12248v20141116 
                 hypothetical protein 
                 1886 
                 842 
                 1886 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12251v20141116 
                 hypothetical protein 
                 844 
                 844 
                 1887 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12252v20141116 
                 porin 
                 845 
                 845 
                 1888 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 12270v20141116 
                 hypothetical protein 
                 4642 
                 NA 
                 1900 
                 NA 
                 NA 
                 NA 
                 4642 
               
               
                 12282v20141116 
                 carbohydrate-selective 
                 3725 
                 NA 
                 1905 
                 NA 
                 NA 
                 3725 
                 NA 
               
               
                   
                 porin OprB 
               
               
                 13420v20141116 
                 hypothetical protein 
                 3739 
                 NA 
                 NA 
                 NA 
                 3131 
                 3739 
                 NA 
               
               
                   
                 Mchl_5363 
               
               
                 14119v20141116 
                 hypothetical protein 
                 848 
                 848 
                 NA 
                 NA 
                 3156 
                 NA 
                 NA 
               
               
                   
                 BBta_6573 
               
               
                 14131v20141116 
                 hypothetical protein 
                 853 
                 853 
                 1912 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 CcrKarma_gp008 
               
               
                 14132v20141116 
                 None 
                 854 
                 854 
                 1913 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 14133v20141116 
                 None 
                 855 
                 855 
                 1914 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 14134v20141116 
                 None 
                 856 
                 856 
                 1915 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 14136v20141116 
                 None 
                 857 
                 857 
                 1916 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 14137v20141116 
                 None 
                 858 
                 858 
                 1917 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 14138v20141116 
                 None 
                 859 
                 859 
                 1918 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 14139v20141116 
                 hypothetical protein 
                 860 
                 860 
                 1919 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 14152v20141116 
                 glycosyl transferase 
                 867 
                 867 
                 1920 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 family protein 
               
               
                 14156v20141116 
                 None 
                 869 
                 869 
                 1921 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 14168v20141116 
                 integrase catalytic 
                 1923 
                 871 
                 1923 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 region (modular 
               
               
                   
                 protein) 
               
               
                 14170v20141116 
                 hypothetical protein 
                 1925 
                 872 
                 1925 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 14172v20141116 
                 Fis family 
                 873 
                 873 
                 NA 
                 NA 
                 NA 
                 NA 
                 4875 
               
               
                   
                 transcriptional 
               
               
                   
                 regulator 
               
               
                 14174v20141116 
                 hypothetical protein 
                 874 
                 874 
                 1926 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 Mrad2831_5180 
               
               
                 14176v20141116 
                 hypothetical protein 
                 1927 
                 875 
                 1927 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 14181v20141116 
                 magnesium chelatase 
                 878 
                 878 
                 1929 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 14182v20141116 
                 hypothetical protein 
                 879 
                 879 
                 1930 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 14189v20141116 
                 hypothetical protein 
                 884 
                 884 
                 1931 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 14190v20141116 
                 None 
                 1932 
                 885 
                 1932 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 14196v20141116 
                 WGR domain- 
                 1934 
                 889 
                 1934 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 containing protein 
               
               
                 14200v20141116 
                 hypothetical protein 
                 893 
                 893 
                 1935 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 14291v20141116 
                 hypothetical protein 
                 2020 
                 NA 
                 2020 
                 2342 
                 NA 
                 NA 
                 NA 
               
               
                 14320v20141116 
                 membrane protein 
                 3160 
                 NA 
                 2046 
                 NA 
                 3160 
                 NA 
                 NA 
               
               
                 14649v20141116 
                 dienelactone hydrolase 
                 3173 
                 NA 
                 NA 
                 NA 
                 3173 
                 3768 
                 NA 
               
               
                 14657v20141116 
                 hypothetical protein 
                 3180 
                 NA 
                 NA 
                 NA 
                 3180 
                 NA 
                 4881 
               
               
                 15376v20141116 
                 transcriptional 
                 2058 
                 904 
                 2058 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 regulator 
               
               
                 15391v20141116 
                 hypothetical protein 
                 916 
                 916 
                 2059 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 15392v20141116 
                 None 
                 917 
                 917 
                 2060 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 15394v20141116 
                 RluA family 
                 918 
                 918 
                 2061 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 pseudouridine 
               
               
                   
                 synthase 
               
               
                 15437v20141116 
                 PAS sensor protein 
                 2063 
                 938 
                 2063 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 15441v20141116 
                 integrase catalytic 
                 940 
                 940 
                 2064 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 subunit 
               
               
                 15442v20141116 
                 hypothetical protein 
                 2370 
                 941 
                 NA 
                 2370 
                 NA 
                 NA 
                 NA 
               
               
                 15451v20141116 
                 hypothetical protein 
                 946 
                 946 
                 2065 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 15452v20141116 
                 molecular chaperone 
                 947 
                 947 
                 2066 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 GroES 
               
               
                 15460v20141116 
                 epimerase 
                 952 
                 952 
                 2067 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 15489v20141116 
                 hypothetical protein 
                 2371 
                 NA 
                 2085 
                 2371 
                 NA 
                 NA 
                 NA 
               
               
                 15815v20141116 
                 hypothetical protein 
                 3787 
                 NA 
                 NA 
                 2393 
                 NA 
                 3787 
                 NA 
               
               
                 17689v20141116 
                 None 
                 993 
                 993 
                 2112 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 17695v20141116 
                 hypothetical protein 
                 999 
                 999 
                 2113 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 17705v20141116 
                 None 
                 1006 
                 1006 
                 2114 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 17706v20141116 
                 hypothetical protein 
                 2406 
                 NA 
                 NA 
                 2406 
                 3251 
                 NA 
                 NA 
               
               
                 17707v20141116 
                 hypothetical protein 
                 1007 
                 1007 
                 2115 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 17708v20141116 
                 None 
                 1008 
                 1008 
                 2116 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 17709v20141116 
                 None 
                 1009 
                 1009 
                 2117 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 17710v20141116 
                 None 
                 1010 
                 1010 
                 2118 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 17731v20141116 
                 integrase catalytic 
                 3252 
                 1024 
                 NA 
                 NA 
                 3252 
                 NA 
                 NA 
               
               
                   
                 subunit 
               
               
                 17732v20141116 
                 putative aspartate 
                 2407 
                 1025 
                 NA 
                 2407 
                 NA 
                 NA 
                 NA 
               
               
                   
                 racemase 
               
               
                 17757v20141116 
                 None 
                 2119 
                 1041 
                 2119 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 17759v20141116 
                 hypothetical protein 
                 2120 
                 1042 
                 2120 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 17795v20141116 
                 hypothetical protein 
                 1073 
                 1073 
                 2122 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                   
                 Mrad2831_4255 
               
               
                 17807v20141116 
                 glycosyl transferase 
                 1085 
                 1085 
                 NA 
                 2409 
                 NA 
                 NA 
                 NA 
               
               
                 17808v20141116 
                 hypothetical protein 
                 2123 
                 1086 
                 2123 
                 NA 
                 NA 
                 NA 
                 NA 
               
               
                 17857v20141116 
                 polar amino acid ABC 
                 2164 
                 NA 
                 2164 
                 2410 
                 NA 
                 NA 
                 NA 
               
               
                   
                 transporter permease 
               
               
                 18264v20141116 
                 hypothetical protein 
                 3258 
                 NA 
                 NA 
                 2416 
                 3258 
                 NA 
                 NA 
               
               
                   
                 Rleg2_4164 
               
               
                   
               
            
           
         
       
     
     REFERENCES FOR EXAMPLE 8 
     
         
         1. Miller J R, Koren S, Sutton G (2010) Assembly algorithms for next-generation sequencing data. Genomics 95: 315-327. 
         2. Zerbino D R, Birney E (2008) Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res 18: 821-829. 
         3. Delcher A L, Bratke K A, Powers E C, Salzberg S L (2007) Identifying bacterial genes and endosymbiont DNA with Glimmer. Bioinformatics 23: 673-679. 
         4. Lowe T M, Eddy S R (1997) tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res 25: 955-964. 
         5. Lagesen K, Hallin P, Rodland E A, Staerfeldt H H, Rognes T, et al. (2007) RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res 35: 3100-3108. 
         6. Cantarel B, Korf I, Robb S, et al. (2008) MAKER: An easy-to-use annotation pipeline designed for emerging model organism genomes. Genome Research 18: 188-196. 
         7. Altschul S F, Madden T L, Schaffer A A, Zhang J, Zhang Z, et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402. 
         8. Eddy S R (2009) A new generation of homology search tools based on probabilistic inference. Genome Inform 23: 205-211. 
         9. Haft D H, Selengut J D, White O (2003) The TIGRFAMs database of protein families. Nucleic Acids Res 31: 371-373. 
         10. Tatusov R L, Fedorova N D, Jackson J D, Jacobs A R, Kiryutin B, et al. (2003) The COG database: an updated version includes eukaryotes. BMC Bioinformatics 4: 41. 
         11. Suzek B E, Huang H, McGarvey P, Mazumder R, Wu C H (2007) UniRef: comprehensive and non-redundant UniProt reference clusters. Bioinformatics 23: 1282-1288. 
         12. Li H. and Durbin R. (2009) Fast and accurate short read alignment with Burrows-Wheeler Transform. Bioinformatics, 25:1754-60 
       
    
     The inclusion of various references herein is not to be construed as any admission by the Applicants that the references constitute prior art. Applicants expressly reserve their right to challenge any allegations of unpatentability of inventions disclosed herein over the references included herein. 
     Having illustrated and described the principles of the present invention, it should be apparent to persons skilled in the art that the invention can be modified in arrangement and detail without departing from such principles. 
     Although the materials and methods of this invention have been described in terms of various embodiments and illustrative examples, it will be apparent to those of skill in the art that variations can be applied to the materials and methods described herein without departing from the concept, spirit and scope of the invention. All such similar substitutes and modifications apparent to those skilled in the art are deemed to be within the spirit, scope and concept of the invention as defined by the appended claims.