Patent Publication Number: US-2021171977-A1

Title: Synthetic promoters

Description:
RELATED APPLICATION 
     This application is a national stage filing under 35 U.S.C. § 371 of International Patent Application Ser. No. PCT/US2018/022093, filed Mar. 13, 2018, which claims the benefit under 35 U.S.C. § 119(e) of U.S. provisional application No. 62/470,754, filed Mar. 13, 2017, the contents of each of which is incorporated by reference herein in its entirety. 
    
    
     FEDERALLY SPONSORED RESEARCH 
     This invention was made with Government support under Grant No. W911NF-11-2-0056 awarded by the Army Research Office and under Grant No. P50 GM098792 awarded by the National Institutes of Health. The Government has certain rights in the invention. 
    
    
     SEQUENCE LISTING 
     The Sequence Listing named M065670406US01-SEQ-ZJG having a size of 4.68 MB created Sep. 12, 2019 is incorporated herein by reference in its entirety. 
     BACKGROUND 
     Targeted therapy is useful for treating a myriad of different diseases. Cell type-specific and/or cellular state-specific control of gene expression enables, for example, targeted delivery of therapeutic proteins to diseased cells (e.g., cancer cells) without adversely affecting healthy, non-diseased cells. 
     SUMMARY 
     Some aspects of the present disclosure provide synthetic promoters that have differential activities in different cell types and/or different cellular states. The synthetic promoters may be used to drive expression of gene(s) of interest in a specific cell type or during a specific cellular state. In some embodiments, a synthetic promoter is used for diagnostic purposes to drive the expression of a detectable molecule (e.g., a fluorescent protein such as GFP) in a specific cell type or at a specific cellular state. In some embodiments, a synthetic promoter is used for therapeutic purposes to drive the expression of a therapeutic molecule (e.g., a protein, such as an antibody, or a nucleic acid, such as a siRNA) in a specific cell type (e.g., a cancer cell) or during a specific cellular state. 
     Thus, provided herein are engineered nucleic acids comprising a promoter that comprises the following consensus sequence: TFBS-AGA-TFBS- TCG-TFBS-GAC-TFBS-CTA-TFBS-ACT-TFBS-TGC-TFBS-GTA-TFBS, wherein TFBS is a transcription factor binding site sequence of Table 5. In some embodiments, the activity of the promoter is increased in diseased cells relative to healthy cells. In some embodiments, the activity of the promoter is decreased in diseased cells relative to healthy cells. 
     In some embodiments, the diseased cells are selected from breast cancer cells, colon cancer cells, and ovarian cancer cells. 
     In some embodiments, the promoter is operably linked to a nucleotide sequence encoding a therapeutic protein. 
     In some embodiments, the transcription factor binding site sequence comprises the following sequence: CCACGTGC (SEQ ID NO: 12265). In some embodiments, the promoter comprises the following sequence: 
     
       
         
           
               
            
               
                 (SEQ ID NO: 12266) 
               
               
                 CCACGTGCAGACCACGTGCTCGCCACGTGCGACCCACGTGCCTACCACGT 
               
               
                   
               
               
                 GCACTCCACGTGCTGCCCACGTGCGTACCACGTGCG. 
               
            
           
         
       
     
     In some embodiments, the transcription factor binding site sequence comprises the following sequence: TGCTGAGTCAGCA (SEQ ID NO: 12267). In some embodiments, the promoter comprises the following sequence: 
     
       
         
           
               
            
               
                 (SEQ ID NO: 12268) 
               
               
                 TGCTGAGTCAGCAAGATGCTGAGTCAGCATCGTGCTGAGTCAGCAGACTG 
               
               
                   
               
               
                 CTGAGTCAGCACTATGCTGAGTCAGCAACTTGCTGAGTCAGCATGCTGCT 
               
               
                   
               
               
                 GAGTCAGCAGTATGCTGAGTCAGCAG. 
               
            
           
         
       
     
     Also provided herein are cells comprising an engineered nucleic acid described herein. 
     Further provided herein are viruses, such as lentiviruses, adenoviruses, adeno-associated viruses, and/or oncolytic viruses comprising an engineered nucleic acid described herein. In some embodiments, the oncolytic virus is an oncolytic herpes simplex virus. 
     The present disclosure also provides methods of delivering to a cell, optionally in a subject, an engineered nucleic acid or an oncolytic virus described herein. 
     In some embodiments, the engineered nucleic acids comprise a promoter that comprises a nucleotide sequence identified by any one of SEQ ID NOs: 1-12263. In some embodiments, the activity of the promoter is increased in diseased cells (e.g., ovarian cancer cells or breast cancer cells) relative to healthy cells. In some embodiments, the activity of the promoter is decreased in diseased cells relative to healthy cells. SEQ ID NOs: 1-12263 include the sequence ATCATCTCACCTTGCCTCCTG (SEQ ID NO: 12264), used to amplify promoters of interest directly from the promoter library. It will be understood that “a promoter that comprises the nucleotide sequence identified by any one of SEQ ID NOS: 1-12263,” in some embodiments, does not include the 5′ SEQ ID NO: 12264. Thus, SEQ ID NO: 12264 may be excluded from any one of SEQ ID NOs. 1-12263. 
     Also provided herein are cells comprising engineered nucleic acids that include a synthetic promoter having a nucleotide sequence identified by any one of SEQ ID NOS: 1-12263. 
     The present disclosure also provide delivering to a cell or delivering to a subject (e.g., directly or via a cell) an engineered nucleic acid that includes a synthetic promoter having a nucleotide sequence identified by any one of SEQ ID NOS: 1-12263. 
     The entire disclosure of Nissim, L. et al. Cell 2017; 171: 1138-1150 is incorporated herein by reference. 
    
    
     
       BRIEF DESCRIPTION OF THE DRAWINGS 
       The accompanying drawings are not intended to be drawn to scale. For purposes of clarity, not every component may be labeled in every drawing. 
         FIG. 1  is a graph showing the activities of synthetic promoters in four different cell lines: HCT, MDA-453, MCF-7, and MCF-10A. 
         FIG. 2  is a graph showing the activities of synthetic promoters in eight different cell lines: OVCAR8, MDA-453, MDA-231, HCT, aHDF, CCD, 12A, and 10A. 
         FIG. 3  is a graph showing the activities of synthetic promoters in four cell lines: OVCAR8, IOSE385, IOSE386, and IOSE120. 
         FIG. 4  is a graph showing the activities of synthetic promoters in eight different cell lines: OVCAR8, IOSE385, IOSE386, IOSE120, aHDF, CCD, 12A, 10A, HEK, and NB508. 
         FIG. 5  is a graph showing the activities of synthetic promoters in four different cell lines: OVCAR8, HEK293T, NB508, and 4T1. 
         FIG. 6  is a graph showing the activities of synthetic promoters in eight different cell lines: OVCAR8, IOSE385, IOSE386, IOSE120, aHDF, CCD, MCF10A, and MCF12A. 
         FIG. 7  is a graph showing the activities of synthetic promoters in four different cell lines: OVCAR8, IOSE386, IOSE120, 12A, and 10A. 
         FIG. 8  is a graph showing the activities of synthetic promoters in three different cell lines: NB508, 4T1, and OVCAR8. 
         FIG. 9  is a graph showing the activities of synthetic promoters in two different cell lines: 10A and MDA. 
         FIG. 10  is a graph showing the activities of synthetic promoters in two different cell lines: 10A and MDA. 
     
    
    
     DETAILED DESCRIPTION 
     Provided herein are synthetic promoters that are differentially modulated among various diseased cell types, relative to healthy (normal), non-diseased cell types. These synthetic promoters may be used for targeted expression of molecules/products of interest (e.g., therapeutic and/or diagnostic molecules) in select cell types (e.g., cancer cells or other diseased cells). 
     Synthetic Promoters 
     A “promoter” refers to a control region of a nucleic acid sequence at which initiation and rate of transcription of the remainder of a nucleic acid sequence are controlled. A promoter regulates (e.g., activates or represses) expression or transcription of the nucleic acid sequence that it is operably linked to. A promoter may also contain sub-regions at which regulatory proteins and molecules may bind, such as RNA polymerase and other transcription factors. Promoters may be constitutive, inducible, activatable, repressible, tissue-specific, cell type-specific, cell state-specific, or any combination thereof. 
     Promoters of the present disclosure are synthetic promoters. A synthetic promoters is a promoter that is not “naturally occurring.” The synthetic promoters of the present disclosure may be produced synthetically (e.g., via chemical synthesis), or using recombinant cloning and/or nucleic acid amplification technology, including polymerase chain reaction (PCR) (see U.S. Pat. Nos. 4,683,202 and 5,928,906). 
     In some embodiments, a synthetic promoter may be 10-300 nucleotides long. For example, the length of a synthetic promoter may be 10-300, 10-290, 10-280, 10-270, 10-260, 10-250, 10-240, 10-230, 10-220, 10-210, 10-210, 10-200, 10-190, 10-180, 10-170, 10-160, 10-150, 10-140, 10-130, 10-120, 10-110, 10-100, 10-90, 10-80, 10-70, 10-60, 10-50, 10-40, 10-30, 10-20, 20-300, 20-290, 20-280, 20-270, 20-260, 20-250, 20-240, 20-230, 20-220, 20-210, 20-210, 20-200, 20-190, 20-180, 20-170, 20-160, 20-150, 20-140, 20-130, 20-120, 20-110, 20-100, 20-90, 20-80, 20-70, 20-60, 20-50, 20-40, 20-30, 30-300, 30-290, 30-280, 30-270, 30-260, 30-250, 30-240, 30-230, 30-220, 30-210, 30-210, 30-200, 30-190, 30-180, 30-170, 30-160, 30-150, 30-140, 30-130, 30-120, 30-110, 30-100, 30-90, 30-80, 30-70, 30-60, 30-50, 30-40, 40-300, 40-290, 40-280, 40-270, 40-260, 40-250, 40-240, 40-230, 40-220, 40-210, 40-210, 40-200, 40-190, 40-180, 40-170, 40-160, 40-150, 40-140, 40-130, 40-120, 40-110, 40-100, 40-90, 40-80, 40-70, 40-60, 40-50, 50-300, 50-290, 50-280, 50-270, 50-260, 50-250, 50-240, 50-230, 50-220, 50-210, 50-210, 50-200, 50-190, 50-180, 50-170, 50-160, 50-150, 50-140, 50-130, 50-120, 50-110, 50-100, 50-90, 50-80, 50-70, 50-60, 60-300, 60-290, 60-280, 60-270, 60-260, 60-250, 60-240, 60-230, 60-220, 60-210, 60-210, 60-200, 60-190, 60-180, 60-170, 60-160, 60-150, 60-140, 60-130, 60-120, 60-110, 60-100, 60-90, 60-80, 60-70, 70-300, 70-290, 70-280, 70-270, 70-260, 70-250, 70-240, 70-230, 70-220, 70-210, 70-210, 70-200, 70-190, 70-180, 70-170, 70-160, 70-150, 70-140, 70-130, 70-120, 70-110, 70-100, 70-90, 70-80, 80-300, 80-290, 80-280, 80-270, 80-260, 80-250, 80-240, 80-230, 80-220, 80-210, 80-210, 80-200, 80-190, 80-180, 80-170, 80-160, 80-150, 80-140, 80-130, 80-120, 80-110, 80-100, 80-90, 90-300, 90-290, 90-280, 90-270, 90-260, 90-250, 90-240, 90-230, 90-220, 90-210, 90-210, 90-200, 90-190, 90-180, 90-170, 90-160, 90-150, 90-140, 90-130, 90-120, 90-110, 90-100, 100-300, 100-290, 100-280, 100-270, 100-260, 100-250, 100-240, 100-230, 100-220, 100-210, 100-210, 100-200, 100-190, 100-180, 100-170, 100-160, 100-150, 100-140, 100-130, 100-120, 100-110, 110-300, 110-290, 110-280, 110-270, 110-260, 110-250, 110-240, 110-230, 110-220, 110-210, 110-210, 110-200, 110-190, 110-180, 110-170, 110-160, 110-150, 110-140, 110-130, 110-120, 120-300, 120-290, 120-280, 120-270, 120-260, 120-250, 120-240, 120-230, 120-220, 120-210, 120-210, 120-200, 120-190, 120-180, 120-170, 120-160, 120-150, 120-140, 120-130, 130-300, 130-290, 130-280, 130-270, 130-260, 130-250, 130-240, 130-230, 130-220, 130-210, 130-210, 130-200, 130-190, 130-180, 130-170, 130-160, 130-150, 130-140, 140-300, 140-290, 140-280, 140-270, 140-260, 140-250, 140-240, 140-230, 140-220, 140-210, 140-210, 140-200, 140-190, 140-180, 140-170, 140-160, 140-150, 150-300, 150-290, 150-280, 150-270, 150-260, 150-250, 150-240, 150-230, 150-220, 150-210, 150-210, 150-200, 150-190, 150-180, 150-170, 150-160, 160-300, 160-290, 160-280, 160-270, 160-260, 160-250, 160-240, 160-230, 160-220, 160-210, 160-210, 160-200, 160-190, 160-180, 160-170, 170-300, 170-290, 170-280, 170-270, 170-260, 170-250, 170-240, 170-230, 170-220, 170-210, 170-210, 170-200, 170-190, 170-180, 180-300, 180-290, 180-280, 180-270, 180-260, 180-250, 180-240, 180-230, 180-220, 180-210, 180-210, 180-200, 180-190, 190-300, 190-290, 190-280, 190-270, 190-260, 190-250, 190-240, 190-230, 190-220, 190-210, 190-210, 190-200, 200-300, 200-290, 200-280, 200-270, 200-260, 200-250, 200-240, 200-230, 200-220, 200-210, 200-210, 210-300, 210-290, 210-280, 210-270, 210-260, 210-250, 210-240, 210-230, 210-220, 220-300, 220-290, 220-280, 220-270, 220-260, 220-250, 220-240, 220-230, 230-300, 230-290, 230-280, 230-270, 230-260, 230-250, 230-240, 240-300, 240-290, 240-280, 240-270, 240-260, 240-250, 250-300, 250-290, 250-280, 250-270, 250-260, 260-300, 260-290, 260-280, 260-270, 270-300, 270-290, 270-280, 280-300, 280-290, or 290-300 nucleotides. Promoters may be longer than 300 nucleotides, in some embodiments. In some embodiments, a synthetic promoter may be longer than 300 nucleotide (e.g., 300, 350, 400, 450, or 500 nucleotides long or longer). 
     In some embodiments, the length of a synthetic promoter is 200 nucleotides or shorter. In some embodiments, a synthetic promoter may be 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194, 195, 196, 197, 198, 199, or 200 nucleotides long. 
     In some embodiments, a synthetic promoter comprises the nucleotide sequence identified by any one of SEQ ID NOs: 1-12263 (with or without the 5′ sequence identified by SEQ ID NO: 12264). In some embodiments, a synthetic promoter comprises a nucleotide sequence that is at least 95% identical to the nucleotide sequence identified by any one of SEQ ID NOs: 1-12263 (with or without the 5′ sequence identified by SEQ ID NO: 12264), and is able to regulate the expression (e.g., activate or repress) the sequence to which it is operably linked. For example, a synthetic promoter may comprise a nucleotide sequence that is at least 95%, at least 96%, at least 97%, at least 98%, at least 99%, or at least 99.5% identical to the nucleotide sequence identified by any one of SEQ ID NOs: 1-12263 (with or without the 5′ sequence identified by SEQ ID NO: 12264), and is able to regulate the expression (e.g., activate or repress) the sequence to which it is operably linked. In some embodiments, a synthetic promoter comprises a nucleotide sequence that is 95-99% identical to the nucleotide sequence identified by any one of SEQ ID NOs: 1-12263 (with or without the 5′ sequence identified by SEQ ID NO: 12264), and is able to regulate the expression (e.g., activate or repress) the sequence to which it is operably linked. In some embodiments, a synthetic promoter comprises a nucleotide sequence that is 95%-99%, 95%-98%, 95%-97%, 95%-96%, 96%-99%, 96%-98%, 96%-97%, 97%-99%, 97%-98%, or 98%-99% identical to the nucleotide sequence identified by any one of SEQ ID NOs: 1-12263 (with or without the 5′ sequence identified by SEQ ID NO: 12264), and is able to regulate the expression (e.g., activate or repress) the sequence to which it is operably linked. In some embodiments, a synthetic promoter may comprise a nucleotide sequence that is 95%, 96%, 97%, 98%, 99%, or 99.5% identical to the nucleotide sequence identified by any one of SEQ ID NOs: 1-12263 (with or without the 5′ sequence identified by SEQ ID NO: 12264), and is able to regulate the expression (e.g., activate or repress) the sequence to which it is operably linked. 
     Other aspects of the present disclosure provide synthetic promoters having differential activities in different cell lines or different cellular states. “Having differential activities” means the activity of a synthetic promoter is higher or lower in one type of cell or at a cellular state, compare to in a different type of cell or at a different cellular state, respectfully. In some embodiments, the activity of a synthetic promoter in one cell type or a cellular state is different from (higher or lower) the activity of the synthetic promoter in another cell type or another cellular state by at least 10% (e.g., at least 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90% 100%, 2-fold, 3-fold, 4-fold, 5-fold, 6-fold, 7-fold, 8 -fold, 9-fold, 10-fold, 20-fold, 30-fold, 40-fold, 50-fold, 60-fold, 70-fold, 80-fold, 90-fold, 100-fold, 500-fold, or 1000-fold). In some embodiments, the activity of a synthetic promoter in one cell type or a cellular state is different from (higher or lower) the activity of the synthetic promoter in another cell type or another cellular state by 10%-100%. For example, the activity of a synthetic promoter in one cell type or a cellular state may be different from (higher or lower) the activity of the synthetic promoter in another cell type or another cellular state by 10%-100%, 10%-90%, 10%-80%, 10%-70%, 10%-60%, 10%-50%, 10%-40%, 10%-30%, 10%-20%, 20%-100%, 20%-90%, 20%-80%, 20%-70%, 20%-60%, 20%-50%, 20%-40%, 20%-30%, 30%-100%, 30%-90%, 30%-80%, 30%-70%, 30%-60%, 30%-50%, 30%-40%, 40%-100%, 40%-90%, 40%-80%, 40%-70%, 40%-60%, 40%-50%, 50%-100%, 50%-90%, 50%-80%, 50%-70%, 50%-60%, 60%-100%, 60%-90%, 60%-80%, 60%-70%, 70%-100%, 70%-90%, 70%-80%, 80%-100%, 80%-90%, or 90%-100%. In some embodiments, the activity of a synthetic promoter in one cell type or a cellular state is different from (higher or lower) the activity of the synthetic promoter in another cell type or another cellular state by 1-1000 fold. For example, the activity of a synthetic promoter in one cell type or a cellular state may be different from (higher or lower than) the activity of the synthetic promoter in another cell type or another cellular state by 1-1000, 1-900, 1-800, 1-700, 1-600, 1-500, 1-400, 1-300, 1-200, 1-100, 1-90, 1-80, 1-70, 1-60, 1-50, 1-40, 1-30, 1-20, 1-10, 1-9, 1-8, 1-7, 1-6, 1-5, 1-4, 1-3, 1-2, 5-1000, 5-900, 5-800, 5-700, 5-600, 5-500, 5-400, 5-300, 5-200, 5-100, 5-90, 5-80, 5-70, 5-60, 5-50, 5-40, 5-30, 5-20, 5-10, 5-9, 5-8, 5-7, 5-6, 10-1000, 10-900, 10-800, 10-700, 10-600, 10-500, 10-400, 10-300, 10-200, 10-100, 10-90, 10-80, 10-70, 10-60, 10-50, 10-40, 10-30, 10-20, 20-1000, 20-900, 20-800, 20-700, 20-600, 20-500, 20-400, 20-300, 20-200, 20-100, 20-90, 20-80, 20-70, 20-60, 20-50, 20-40, 20-30, 30-1000, 30-900, 30-800, 30-700, 30-600, 30-500, 30-400, 30-300, 30-200, 30-100, 30-90, 30-80, 30-70, 30-60, 30-50, 30-40, 40-1000, 40-900, 40-800, 40-700, 40-600, 40-500, 40-400, 40-300, 40-200, 40-100, 40-90, 40-80, 40-70, 40-60, 40-50, 50-1000, 50-900, 50-800, 50-700, 50-600, 50-500, 50-400, 50-300, 50-200, 50-100, 50-90, 50-80, 50-70, 50-60, 60-1000, 60-900, 60-800, 60-700, 60-600, 60-500, 60-400, 60-300, 60-200, 60-100, 60-90, 60-80, 60-70, 70-1000, 70-900, 70-800, 70-700, 70-600, 70-500, 70-400, 70-300, 70-200, 70-100, 70-90, 70-80, 80-1000, 80-900, 80-800, 80-700, 80-600, 80-500, 80-400, 80-300, 80-200, 80-100, 80-90, 90-1000, 90-900, 90-800, 90-700, 90-600, 90-500, 90-400, 90-300, 90-200, 90-100, 100-1000, 100-900, 100-800, 100-700, 100-600, 100-500, 100-400, 100-300, 100-200, 200-1000, 200-900, 200-800, 200-700, 200-600, 200-500, 200-400, 200-300, 300-1000, 300-900, 300-800, 300-700, 300-600, 300-500, 300-400, 400-1000, 400-900, 400-800, 400-700, 400-600, 400-500, 500-1000, 500-900, 500-800, 500-700, 500-600, 600-1000, 600-900, 600-800, 600-700, 700-1000, 700-900, 700-800, 800-1000, 800-900, or 900-1000 fold. In some embodiments, the activity of a synthetic promoter in one cell type or a cellular state may be different from (higher or lower than) the activity of the synthetic promoter in another cell type or another cellular state by 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90%, 100%, 2 fold, 2-fold, 3-fold, 4-fold, 5-fold, 6-fold, 7-fold, 8 -fold, 9-fold, 10-fold, 20-fold, 30-fold, 40-fold, 50-fold, 60-fold, 70-fold, 80-fold, 90-fold, 100-fold, 500-fold, or 1000-fold. In some embodiments, a synthetic promoter may be inactive in one cell type and active in another. In some embodiments, a synthetic promoter may be inactive in one cellular state and active in another. Methods of measuring the activities of a promoter (e.g., a synthetic promoter) are known to those skilled in the art, e.g., as described in Jeyaseelan et al., Nucleic Acids Research. 29 (12), 2001; Allard et al., Cell Notes (21), 2008; and Zaslaver et al., Nature Methods. 3 (8): 623-628, 2006, each of which is incorporated herein by reference. 
     In some embodiments, a synthetic promoter has differential activity (higher or lower) in one type of diseased cell relative to a healthy cell or another type of diseased cell. A “diseased cell” refers to an abnormal cell that is associated with a particular disease or condition. Non-limiting examples of diseased cells include: cancer cells, diseased neurons, diseased cardiomyocytes, diseased skin cells, diseased liver cells, diseased immune cells, diseased epithelial cells, diseased eye cells, diseased astrocytes, diseased microglia, and diseased stem cells. Other diseased cell types are encompassed herein. One skilled in the art is able to identify diseased cells. A “healthy” cell, also referred to as a “non-diseased cell,” refers to a normal cell that is not associated with any disease or condition. 
     In some embodiments, a synthetic promoter has differential activity (e.g., higher or lower) in one cellular state relative to another cellular state. Non-limiting examples of different cell types that may transition between different cellular states include: embryonic stem cells, adult stem cells, induced pluripotent stem cells, neurons, cardiomyocytes, skin cells, liver cells, immune cells, epithelial cells, eye cells, astrocytes, and microglia. 
     In some embodiments, a synthetic promoter as provided herein is active only in or has higher activity in cancer cells. For example, a synthetic promoter as provided herein may be activate only in in breast cancer cells and remains inactive in non-breast cancer cells, or has higher activity in breast cancer cells compared to in healthy cells or non-breast cancer cells. As another example, a synthetic promoter as provided herein may be activate only in tumor cancer cells and remains inactive in circulating cancer cells, or has higher activity in tumor cancer cells compared to circulating cancer cells. 
     In some embodiments, a synthetic promoter has higher activity in a breast cancer cell relative to a healthy cell or relative to other types of cancer cells. 
     In some embodiments, a synthetic promoter has higher activity in a ovarian cancer cell relative to a healthy cell or relative to other types of cancer cells. 
     In some embodiments, a synthetic promoter has higher activity in a colorectal cancer cell relative to a healthy cell or relative to other types of cancer cells. 
     In some embodiments, a synthetic promoter comprises at least one (one or more) sequence identified in Table 5 (a specific transcription factor binding site sequence). In some embodiments, a synthetic promoter comprises at least one (e.g., at least 2, at least 3, at least 4, or at least 5) tandem repeat of a sequence identified in Table 5. In some embodiments, a synthetic promoter comprises 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10 tandem repeat(s) of a sequence identified in Table 5. A repeat sequence of Table 5 may be separated from each other by a linker sequence. In some embodiments, the linker sequences comprises or consists of three (random) nucleotides (e.g., AGA, TCG, GAC, CTA, ACT, TGC, GTA). In some embodiments, a synthetic promoter comprises the following consensus motif: TFBS-AGA-TFBS- TCG-TFBS-GAC-TFBS-CTA-TFBS-ACT-TFBS-TGC-TFBS-GTA-TFBS, wherein “TFBS” is a transcription factor binding site of Table 5. 
     In some embodiments, a synthetic promoter may comprise a tandem repeat of a USF1 transcription factor binding site CCACGTGC (SEQ ID NO: 12265). In some embodiments, a synthetic promoter comprises the following sequence: 
                    (SEQ ID NO: 12266)         CCACGTGC AGA CCACGTGC TCG CCACGTGC GAC CCACGTGC CTA CCACGT                   GC ACT CCACGTGC TGC CCACGTGC GTA CCACGTGC G.            
In some embodiments, a synthetic promoter may comprise a tandem repeat of a MAFK transcription factor binding site TGCTGAGTCAGCA (SEQ ID NO: 12267). In some embodiments, a synthetic promoter comprises the following sequence:
 
     
       
         
           
               
            
               
                 (SEQ ID NO: 12268) 
               
               
                   TGCTGAGTCAGCA AGA TGCTGAGTCAGCA TCG TGCTGAGTCAGCA GAC TG   
               
               
                   
               
               
                   CTGAGTCAGCA CTA TGCTGAGTCAGCA ACT TGCTGAGTCAGCA TGC TGCT   
               
               
                   
               
               
                   GAGTCAGCA GTA TGCTGAGTCAGCA G. 
               
            
           
         
       
     
     Engineered Nucleic Acids and Output Molecules 
     Further provided herein are engineered nucleic acids (e.g., construct) containing the synthetic promoters described herein. In some embodiments, a synthetic promoter is operably linked to a nucleotide sequence encoding a molecule (e.g., a protein or nucleic acid). A promoter is considered to be “operably linked” when it is in a correct functional location and orientation in relation to a nucleic acid sequence it regulates to control (“drive”) transcriptional initiation and/or expression of that sequence. 
     In some embodiments, a synthetic promoter is operably linked to a nucleotide sequence encoding an output molecule, such that activation of the synthetic promoter results in expression of the output molecule. The signal of the output molecule may be detected and its intensity is an indication of the level of activation of the synthetic promoter. As such, by comparing the signal from the output molecule, the activities of a synthetic promoter in different cell types can be compared. In some embodiments, a promoter that is operably linked to a nucleotide sequence encoding an output molecule may be used for diagnostic purposes. For example, when a synthetic promoter that has higher activity in a diseased cell (e.g., a cancer cell such as a breast cancer cell) is operably linked to a nucleotide sequence encoding an output molecule, the higher signal generated from the output molecule in a cell relative to another cell indicates that the cell is a diseased cell (e.g., a cancer cell such as a breast cancer cell). The example is not meant to be limiting. The synthetic promoter described herein may be used for the diagnosis of any disease, so long as it has differential activity in the diseased cell relative to a healthy cell or to other cell types. 
     In some embodiments, the output molecule is a detectable protein. In some embodiments, a detectable protein is a fluorescent protein. A fluorescent protein is a protein that emits a fluorescent light when exposed to a light source at an appropriate wavelength (e.g., light in the blue or ultraviolet range). Suitable fluorescent proteins that may be used as a detectable protein in the sensor circuit of the present disclosure include, without limitation, eGFP, eYFP, eCFP, mKate2, mCherry, mPlum, mGrape2, mRaspberry, mGrapel, mStrawberry, mTangerine, mBanana, and mHoneydew. In some embodiments, a detectable protein is an enzyme that hydrolyzes an substrate to produce a detectable signal (e.g., a chemiluminescent signal). Such enzymes include, without limitation, beta-galactosidase (encoded by LacZ), horseradish peroxidase, or luciferase. In some embodiments, the output signal is a fluorescent RNA. A fluorescent RNA is an RNA aptamer that emits a fluorescent light when bound to a fluorophore and exposed to a light source at an appropriate wavelength (e.g., light in the blue or ultraviolet range). Suitable fluorescent RNAs that may be used as an output signal in the sensor circuit of the present disclosure include, without limitation, Spinach and Broccoli (e.g., as described in Paige et al., Science Vol. 333, Issue 6042, pp. 642-646, 2011, incorporated herein by reference). 
     In some embodiments, a synthetic promoter is operably linked to a nucleotide sequence encoding a therapeutic molecule. A “therapeutic molecule” is a molecule that has therapeutic effects on a disease or condition, and may be used to treat a diseases or condition. Therapeutic molecules of the present disclosure may be nucleic acid-based or protein or polypeptide-based. In some embodiments, the synthetic promoter drives the expression of the therapeutic molecule in a desired cell type (e.g., cancer cell) but not in other cell types, due to the synthetic promoter&#39;s cell-specific activity. As such, targeted therapy of diseases (e.g., cancer) is achieved. 
     In some embodiments, nucleic acid-based therapeutic molecule may be an RNA interference (RNAi) molecule (e.g., a microRNA, siRNA, or shRNA) or an nucleic acid enzyme (e.g., a ribozyme). RNAi molecules and there use in silencing gene expression are familiar to those skilled in the art. In some embodiments, the RNAi molecule targets an oncogene. 
     An oncogene is a gene that in certain circumstances can transform a cell into a tumor cell. An oncogene may be a gene encoding a growth factor or mitogen (e.g., c-Sis), a receptor tyrosine kinase (e.g., EGFR, PDGFR, VEGFR, or HER2/neu), a cytoplasmic tyrosine kinase (e.g., Src family kinases, Syk-ZAP-70 family kinases, or BTK family kinases), a cytoplasmic serine/threonine kinase or their regulatory subunits (e.g., Raf kinase or cyclin-dependent kinase), a regulatory GTPase (e.g., Ras), or a transcription factor (e.g., Myc). In some embodiments, the oligonucleotide targets Lipocalin (Lcn2) (e.g., a Lcn2 siRNA). One skilled in the art is familiar with genes that may be targeted for the treatment of cancer. 
     Non-limiting examples of protein or polypeptide-based therapeutic molecules include enzymes, regulatory proteins (e.g., immuno-regulatory proteins), antigens, antibodies or antibody fragments, and structural proteins. In some embodiments, the protein or polypeptide-based therapeutic molecules are for cancer therapy. 
     Suitable enzymes (for operably linking to a synthetic promoter) for some embodiments of this disclosure include, for example, oxidoreductases, transferases, polymerases, hydrolases, lyases, synthases, isomerases, and ligases, digestive enzymes (e.g., proteases, lipases, carbohydrases, and nucleases). In some embodiments, the enzyme is selected from the group consisting of lactase, beta-galactosidase, a pancreatic enzyme, an oil-degrading enzyme, mucinase, cellulase, isomaltase, alginase, digestive lipases (e.g., lingual lipase, pancreatic lipase, phospholipase), amylases, cellulases, lysozyme, proteases (e.g., pepsin, trypsin, chymotrypsin, carboxypeptidase, elastase,), esterases (e.g. sterol esterase), disaccharidases (e.g., sucrase, lactase, beta-galactosidase, maltase, isomaltase), DNases, and RNases. 
     Non-limiting examples of antibodies and fragments thereof include: bevacizumab (AVASTIN®), trastuzumab (HERCEPTIN®), alemtuzumab (CAMPATH®, indicated for B cell chronic lymphocytic leukemia,), gemtuzumab (MYLOTARG®, hP67.6, anti-CD33, indicated for leukemia such as acute myeloid leukemia), rituximab (RITUXAN®), tositumomab (BEXXAR®, anti-CD20, indicated for B cell malignancy), MDX-210 (bispecific antibody that binds simultaneously to HER-2/neu oncogene protein product and type I Fc receptors for immunoglobulin G (IgG) (Fc gamma RI)), oregovomab (OVAREX®, indicated for ovarian cancer), edrecolomab (PANOREX®), daclizumab (ZENAPAX®), palivizumab (SYNAGIS®, indicated for respiratory conditions such as RSV infection), ibritumomab tiuxetan (ZEVALIN®, indicated for Non-Hodgkin&#39;s lymphoma), cetuximab (ERBITUX®), MDX-447, MDX-22, MDX-220 (anti-TAG-72), IOR-C5, IOR-T6 (anti-CD1), IOR EGF/R3, celogovab (ONCOSCINT® OV103), epratuzumab (LYMPHOCIDE®), pemtumomab (THERAGYN®), Gliomab-H (indicated for brain cancer, melanoma) . In some embodiments, the antibody is an antibody that inhibits an immune check point protein, e.g., an anti-PD-1 antibody such as pembrolizumab (Keytruda®) or nivolumab (Opdivo®), or an anti-CTLA-4 antibody such as ipilimumab (Yervoy®). Other antibodies and antibody fragments may be operably linked to a synthetic promoter, as provided herein. 
     A regulatory protein may be, in some embodiments, a transcription factor or a immunoregulatory protein. Non-limiting, exemplary transcriptional factors include: those of the NFkB family, such as Rel-A, c-Rel, Rel-B, p50 and p52; those of the AP-1 family, such as Fos, FosB, Fra-1, Fra-2, Jun, JunB and JunD; ATF; CREB; STAT-1, -2, -3, -4, -5 and -6; NFAT-1, -2 and -4; MAF; Thyroid Factor; IRF; Oct-1 and -2; NF-Y; Egr-1; and USF-43, EGR1, Sp1, and E2F1. Other transcription factors may be operably linked to a synthetic promoter, as provided herein. 
     As used herein, an immunoregulatory protein is a protein that regulates an immune response. Non-limiting examples of immunoregulatory include: antigens, adjuvants (e.g., flagellin, muramyl dipeptide), cytokines including interleukins (e.g., IL-2, IL-7, IL-15 or superagonist/mutant forms of these cytokines), IL-12, IFN-gamma, IFN-alpha, GM-CSF, FLT3-ligand), and immunostimulatory antibodies (e.g., anti-CTLA-4, anti-CD28, anti-CD3, or single chain/antibody fragments of these molecules). Other immunoregulatory proteins may be operably linked to a synthetic promoter, as provided herein. 
     As used herein, an antigen is a molecule or part of a molecule that is bound by the antigen-binding site of an antibody. In some embodiments, an antigen is a molecule or moiety that, when administered to or expression in the cells of a subject, activates or increases the production of antibodies that specifically bind the antigen. Antigens of pathogens are well known to those of skill in the art and include, but are not limited to parts (coats, capsules, cell walls, flagella, fimbriae, and toxins) of bacteria, viruses, and other microorganisms. Examples of antigens that may be used in accordance with the disclosure include, without limitation, cancer antigens, self-antigens, microbial antigens, allergens and environmental antigens. Other antigens may be operably linked to a synthetic promoter, as provided herein. 
     In some embodiments, the antigen of the present disclosure is a cancer antigen. A cancer antigen is an antigen that is expressed preferentially by cancer cells (i.e., it is expressed at higher levels in cancer cells than on non-cancer cells) and, in some instances, it is expressed solely by cancer cells. Cancer antigens may be expressed within a cancer cell or on the surface of the cancer cell. Cancer antigens that may be used in accordance with the disclosure include, without limitation, MART-1/Melan-A, gp100, adenosine deaminase-binding protein (ADAbp), FAP, cyclophilin b, colorectal associated antigen (CRC)-0017-1A/GA733, carcinoembryonic antigen (CEA), CAP-1, CAP-2, etv6, AML1, prostate specific antigen (PSA), PSA-1, PSA-2, PSA-3, prostate-specific membrane antigen (PSMA), T cell receptor/CD3-zeta chain and CD20. The cancer antigen may be selected from the group consisting of MAGE-A1, MAGE-A2, MAGE-A3, MAGE-A4, MAGE-A5, MAGE-A6, MAGE-A7, MAGE-A8, MAGE-A9, MAGE-A10, MAGE-A11, MAGE-A12, MAGE-Xp2 (MAGE-B2), MAGE-Xp3 (MAGE-B3), MAGE-Xp4 (MAGE-B4), MAGE-C1, MAGE-C2, MAGE-C3, MAGE-C4 and MAGE-05. The cancer antigen may be selected from the group consisting of GAGE-1, GAGE-2, GAGE-3, GAGE-4, GAGE-5, GAGE-6, GAGE-7, GAGE-8 and GAGE-9. The cancer antigen may be selected from the group consisting of BAGE, RAGE, LAGE-1, NAG, GnT-V, MUM-1, CDK4, tyrosinase, p53, MUC family, HER2/neu, p21ras, RCAS1, a-fetoprotein, E-cadherin, α-catenin, β-catenin, γ-catenin, p120ctn, gp100Pme1117, PRAIVIE, NY-ESO-1, cdc27, adenomatous polyposis coli protein (APC), fodrin, Connexin 37, Ig-idiotype, p15, gp75, GM2 ganglioside, GD2 ganglioside, human papilloma virus proteins, Smad family of tumor antigens, lmp-1, PIA, EBV-encoded nuclear antigen (EBNA)-1, brain glycogen phosphorylase, SSX-1, SSX-2 (HOM-MEL-40), SSX-1, SSX-4, SSX-5, SCP-1 and CT-7, CD20 and c-erbB-2. Other cancer antigens may be operably linked to a synthetic promoter, as provided herein. 
     In some embodiments, a protein or polypeptide-based therapeutic molecule is a fusion protein. A fusion protein is a protein comprising two heterologous proteins, protein domains, or protein fragments, that are covalently bound to each other, either directly or indirectly (e.g., via a linker), via a peptide bond. In some embodiments, a fusion protein is encoded by a nucleic acid comprising the coding region of a protein in frame with a coding region of an additional protein, without intervening stop codon, thus resulting in the translation of a single protein in which the proteins are fused together. 
     A “nucleic acid” is at least two nucleotides covalently linked together, and in some instances, may contain phosphodiester bonds (e.g., a phosphodiester “backbone”). An “engineered nucleic acid” (also referred to as a “construct”) is a nucleic acid that does not occur in nature. It should be understood, however, that while an engineered nucleic acid as a whole is not naturally-occurring, it may include nucleotide sequences that occur in nature. In some embodiments, an engineered nucleic acid comprises nucleotide sequences from different organisms (e.g., from different species). For example, in some embodiments, an engineered nucleic acid includes a murine nucleotide sequence, a bacterial nucleotide sequence, a human nucleotide sequence, and/or a viral nucleotide sequence. Engineered nucleic acids include recombinant nucleic acids and synthetic nucleic acids. A “recombinant nucleic acid” is a molecule that is constructed by joining nucleic acids (e.g. ,isolated nucleic acids, synthetic nucleic acids or a combination thereof) and, in some embodiments, can replicate in a living cell. A “synthetic nucleic acid” is a molecule that is amplified or chemically, or by other means, synthesized. A synthetic nucleic acid includes those that are chemically modified, or otherwise modified, but can base pair with naturally-occurring nucleic acid molecules. Recombinant and synthetic nucleic acids also include those molecules that result from the replication of either of the foregoing. 
     In some embodiments, a nucleic acid of the present disclosure is considered to be a nucleic acid analog, which may contain, at least in part, other backbones comprising, for example, phosphoramide, phosphorothioate, phosphorodithioate, O-methylphophoroamidite linkages and/or peptide nucleic acids. A nucleic acid may be single-stranded (ss) or double-stranded (ds), as specified, or may contain portions of both single-stranded and double-stranded sequence. In some embodiments, a nucleic acid may contain portions of triple-stranded sequence. A nucleic acid may be DNA, both genomic and/or cDNA, RNA or a hybrid, where the nucleic acid contains any combination of deoxyribonucleotides and ribonucleotides (e.g., artificial or natural), and any combination of bases, including uracil, adenine, thymine, cytosine, guanine, inosine, xanthine, hypoxanthine, isocytosine and isoguanine. 
     Nucleic acids of the present disclosure may include one or more genetic elements. A “genetic element” refers to a particular nucleotide sequence that has a role in nucleic acid expression (e.g., promoter, enhancer, terminator) or encodes a discrete product of an engineered nucleic acid (e.g., a nucleotide sequence encoding a guide RNA, a protein and/or an RNA interference molecule, such as siRNA or miRNA). 
     Nucleic acids of the present disclosure may be produced using standard molecular biology methods (see, e.g., Green and Sambrook, Molecular Cloning, A Laboratory Manual, 2012, Cold Spring Harbor Press). 
     In some embodiments, nucleic acids are produced using GIBSON ASSEMBLY® Cloning (see, e.g., Gibson, D.G. et al.  Nature Methods,  343-345, 2009; and Gibson, D.G. et al.  Nature Methods,  901-903, 2010, each of which is incorporated by reference herein). GIBSON ASSEMBLY® typically uses three enzymatic activities in a single-tube reaction: 5′ exonuclease, the 3′ extension activity of a DNA polymerase and DNA ligase activity. The 5′ exonuclease activity chews back the 5′ end sequences and exposes the complementary sequence for annealing. The polymerase activity then fills in the gaps on the annealed regions. A DNA ligase then seals the nick and covalently links the DNA fragments together. The overlapping sequence of adjoining fragments is much longer than those used in Golden Gate Assembly, and therefore results in a higher percentage of correct assemblies. 
     In some embodiments, an engineered nucleic acid is delivered to a cell on a vector. A “vector” refers to a nucleic acid (e.g., DNA) used as a vehicle to artificially carry genetic material (e.g., an engineered nucleic acid) into a cell where, for example, it can be replicated and/or expressed. In some embodiments, a vector is an episomal vector (see, e.g., Van Craenenbroeck K. et al.  Eur. J. Biochem.  267, 5665, 2000, incorporated by reference herein). A non-limiting example of a vector is a plasmid (e.g.,  FIG. 3 ). Plasmids are double-stranded generally circular DNA sequences that are capable of automatically replicating in a host cell. 
     Plasmid vectors typically contain an origin of replication that allows for semi-independent replication of the plasmid in the host and also the transgene insert. Plasmids may have more features, including, for example, a “multiple cloning site,” which includes nucleotide overhangs for insertion of a nucleic acid insert, and multiple restriction enzyme consensus sites to either side of the insert. Another non-limiting example of a vector is a viral vector, such as an oncolytic herpes simplex virus. Thus, the present disclosure provides oncolytic herpes simplex virus vectors comprising an engineered nucleic acid comprising a promoter that comprises the nucleotide sequence identified by any one of SEQ ID NOS: 1-12263, or a nucleotide sequences at least 95% identical to the nucleotide sequence identified by any one of SEQ ID NOS: 1-12263. 
     Cells 
     Cells comprising the engineered nucleic acids of the present disclosure are also provided. Engineered nucleic acids comprising the synthetic promoters described herein are, in some embodiments, delivered systemically or to a particular cell type, such as a cancerous cell, a benign tumor cell or other disease cell. In some embodiments, engineered nucleic acids are delivered to a subject having tumor cells or cancer cells, and the synthetic promoters drive the expression of the nucleotide sequence to which it is operably linked to specifically in the tumor cells or cancer cells. 
     A cancerous cell may be any type of cancerous cell, including, but not limited to, premalignant neoplasms, malignant tumors, metastases, or any disease or disorder characterized by uncontrolled cell growth such that it would be considered cancerous or precancerous. The cancer may be a primary or metastatic cancer. Cancers include, but are not limited to, ocular cancer, biliary tract cancer, bladder cancer, pleura cancer, stomach cancer, ovary cancer, meninges cancer, kidney cancer, brain cancer including glioblastomas and medulloblastomas, breast cancer, cervical cancer, choriocarcinoma, colon cancer, endometrial cancer, esophageal cancer, gastric cancer, hematological neoplasms including acute lymphocytic and myelogenous leukemia, multiple myeloma, AIDS-associated leukemias and adult T-cell leukemia lymphoma, intraepithelial neoplasms including Bowen&#39;s disease and Paget&#39;s disease, liver cancer, lung cancer, lymphomas including Hodgkin&#39;s disease and lymphocytic lymphomas, neuroblastomas, oral cancer including squamous cell carcinoma, ovarian cancer including those arising from epithelial cells, stromal cells, germ cells and mesenchymal cells, pancreatic cancer, prostate cancer, rectal cancer, sarcomas including leiomyosarcoma, rhabdomyosarcoma, liposarcoma, fibrosarcoma, and osteosarcoma, skin cancer including melanoma, Kaposi&#39;s sarcoma, basocellular cancer, and squamous cell cancer, testicular cancer including germinal tumors such as seminoma, non-seminoma, teratomas, choriocarcinomas, stromal tumors and germ cell tumors, thyroid cancer including thyroid adenocarcinoma and medullar carcinoma, and renal cancer including adenocarcinoma and Wilms&#39; tumor. Commonly encountered cancers include breast, prostate, lung, ovarian, colorectal, and brain cancer. In some embodiments, the tumor is a melanoma, carcinoma, sarcoma, or lymphoma. 
     Engineered nucleic acids of the present disclosure may be used in a broad range of host cell types. In some embodiments, engineered nucleic acids are used in mammalian cells (e.g., human cells), bacterial cells ( Escherichia coli  cells), yeast cells, insect cells, or other types of cells. Engineered nucleic acids of the present disclosure may be used in vivo, e.g., in a subject such as a human subject. 
     In some embodiments, engineered nucleic acids comprising synthetic promoters are used in mammalian cells, for example, for research or therapeutic applications. For example, in some embodiments, engineered nucleic acids are used in human cells, primate cells (e.g., vero cells), rat cells (e.g., GH3 cells, 0C23 cells) or mouse cells (e.g., MC3T3 cells). There are a variety of human cell lines, including, without limitation, human embryonic kidney (HEK) cells, HeLa cells, cancer cells from the National Cancer Institute&#39;s 60 cancer cell lines (NCI60), DU145 (prostate cancer) cells, Lncap (prostate cancer) cells, MCF-7 (breast cancer) cells, MDA-MB-438 (breast cancer) cells, PC3 (prostate cancer) cells, T47D (breast cancer) cells, THP-1 (acute myeloid leukemia) cells, U87 (glioblastoma) cells, SHSYSY human neuroblastoma cells (cloned from a myeloma) and Saos-2 (bone cancer) cells. In some embodiments, engineered nucleic acids are expressed in human embryonic kidney (HEK) cells (e.g., HEK 293 or HEK 293T cells). In some embodiments, engineered nucleic acids are expressed in stem cells (e.g., human stem cells) such as, for example, pluripotent stem cells (e.g., human pluripotent stem cells including human induced pluripotent stem cells (hiPSCs)). A “stem cell” refers to a cell with the ability to divide for indefinite periods in culture and to give rise to specialized cells. A “pluripotent stem cell” refers to a type of stem cell that is capable of differentiating into all tissues of an organism, but not alone capable of sustaining full organismal development. A “human induced pluripotent stem cell” refers to a somatic (e.g., mature or adult) cell that has been reprogrammed to an embryonic stem cell-like state by being forced to express genes and factors important for maintaining the defining properties of embryonic stem cells (see, e.g., Takahashi and Yamanaka, Cell 126 (4): 663-76, 2006, incorporated by reference herein). Human induced pluripotent stem cell cells express stem cell markers and are capable of generating cells characteristic of all three germ layers (ectoderm, endoderm, mesoderm). 
     Additional non-limiting examples of cell lines that may be used in accordance with the present disclosure include 293-T, 293-T, 3T3, 4T1, 721, 9L, A-549, A172, A20, A253, A2780, A2780ADR, A2780cis, A431, ALC, B16, B35, BCP-1, BEAS-2B, bEnd.3, BHK-21, BR 293, BxPC3, C2C12, C3H-10T1/2, C6, C6/36, Cal-27, CGR8, CHO, CML Ti, CMT, COR-L23, COR-L23/5010, COR-L23/CPR, COR-L23/R23, COS-7, COV-434, CT26, D17, DH82, DU145, DuCaP, E14Tg2a, EL4, EM2, EM3, EMT6/AR1, EMT6/AR10.0, FM3, H1299, H69, HB54, HB55, HCA2, Hepalcl c7, High Five cells, HL-60, HMEC, HT-29, HUVEC, J558L cells, Jurkat, JY cells, K562 cells, KCL22, KG1, Ku812, KYO1, LNCap, Ma-Mel 1, 2, 3 . . . 48, MC-38, MCF-10A, MCF-7, MDA-MB-231, MDA-MB-435, MDA-MB-468, MDCK II, MG63, MONO-MAC 6, MOR/0.2R, MRCS, MTD-1A, MyEnd, NALM-1, NCI-H69/CPR, NCI-H69/LX10, NCI-H69/LX20, NCI-H69/LX4, NIH-3T3, NW-145, OPCN/OPCT Peer, PNT-1A/PNT 2, PTK2, Raji, RBL cells, RenCa, RIN-5F, RMA/RMAS, S2, Saos-2 cells, Sf21, Sf9, SiHa, SKBR3, SKOV-3, T-47D, T2, T84, THP1, U373, U87, U937, VCaP, WM39, WT-49, X63, YAC-1 and YAR cells. 
     Cells of the present disclosure, in some embodiments, are modified. A modified cell is a cell that contains an exogenous nucleic acid or a nucleic acid that does not occur in nature. In some embodiments, a modified cell contains a mutation in a genomic nucleic acid. In some embodiments, a modified cell contains an exogenous independently replicating nucleic acid (e.g., an engineered nucleic acid present on an episomal vector). In some embodiments, a modified cell is produced by introducing a foreign or exogenous nucleic acid into a cell. A nucleic acid may be introduced into a cell by conventional methods, such as, for example, electroporation (see, e.g., Heiser W. C.  Transcription Factor Protocols: Methods in Molecular Biology™  2000; 130: 117-134), chemical (e.g., calcium phosphate or lipid) transfection (see, e.g., Lewis W. H., et al.,  Somatic Cell Genet.  1980 May; 6(3): 333-47; Chen C., et al.,  Mol Cell Biol.  1987 August; 7(8): 2745-2752), fusion with bacterial protoplasts containing recombinant plasmids (see, e.g., Schaffner W.  Proc Natl Acad Sci  USA. 1980 April; 77(4): 2163-7), transduction, conjugation, or microinjection of purified DNA directly into the nucleus of the cell (see, e.g., Capecchi M. R.  Cell.  1980 November; 22(2 Pt 2): 479-88). 
     In some embodiments, a cell is modified to express a reporter molecule. In some embodiments, a cell is modified to express an inducible promoter operably linked to a reporter molecule (e.g., a fluorescent protein such as green fluorescent protein (GFP) or other reporter molecule). 
     In some embodiments, a cell is modified to overexpress an endogenous protein of interest (e.g., via introducing or modifying a promoter or other regulatory element near the endogenous gene that encodes the protein of interest to increase its expression level). In some embodiments, a cell is modified by mutagenesis. In some embodiments, a cell is modified by introducing an engineered nucleic acid into the cell in order to produce a genetic change of interest (e.g., via insertion or homologous recombination). 
     In some embodiments, an engineered nucleic acid may be codon-optimized, for example, for expression in mammalian cells (e.g., human cells) or other types of cells. Codon optimization is a technique to maximize the protein expression in living organism by increasing the translational efficiency of gene of interest by transforming a DNA sequence of nucleotides of one species into a DNA sequence of nucleotides of another species. Methods of codon optimization are well-known. 
     Also provided herein, in some aspects, are methods that comprise introducing into a cell an (e.g., at least one, at least two, at least three, or more) engineered nucleic acids or an episomal vector (e.g., comprising an engineered nucleic acid). An engineered nucleic acid may be introduced into a cell by conventional methods, such as, for example, electroporation, chemical (e.g., calcium phosphate or lipid) transfection, fusion with bacterial protoplasts containing recombinant plasmids, transduction, conjugation, or microinjection of purified DNA directly into the nucleus of the cell. 
     Engineered nucleic acids of the present disclosure may be delivered to a subject (e.g., a mammalian subject, such as a human subject) by any in vivo delivery method known in the art. For example, engineered nucleic acids may be delivered intravenously. In some embodiments, engineered nucleic acids are delivered in a delivery vehicle (e.g., non-liposomal nanoparticle or liposome). In some embodiments, engineered nucleic acids are delivered systemically to a subject having a cancer or other disease and activated (transcription is activated) specifically in cancer cells or diseased cells of the subject. 
     Engineered nucleic acids, as discussed above, may be delivered to cells (e.g., cancer cells) of a subject using a viral delivery system (e.g., retroviral, adenoviral, adeno-association, helper-dependent adenoviral systems, hybrid adenoviral systems, herpes simplex, pox virus, lentivirus, Epstein-Barr virus) or a non-viral delivery system (e.g., physical: naked DNA, DNA bombardment, electroporation, hydrodynamic, ultrasound or magnetofection; or chemical: cationic lipids, different cationic polymers or lipid polymer) (Nayerossadat N et al.  Adv Biomed Res.  2012; 1: 27, incorporated herein by reference). In some embodiments, the non-viral based deliver system is a hydrogel-based delivery system (see, e.g., Brandl F, et al.  Journal of Controlled Release,  2010, 142(2): 221-228, incorporated herein by reference). 
     Additional Embodiments 
     The present disclosure further provides the additional embodiments set forth in the following numbered paragraphs:
     1. An engineered nucleic acid comprising a promoter that comprises the nucleotide sequence identified by any one of SEQ ID NOS: 1-12263, or a nucleotide sequences at least 95% identical to the nucleotide sequence identified by any one of SEQ ID NOS: 1-12263.   2. The engineered nucleic acid of paragraph 1, wherein the activity of the promoter is increased in diseased cells relative to healthy cells.   3. The engineered nucleic acid of paragraph 1, wherein the activity of the promoter is decreased in diseased cells relative to healthy cells.   4. The engineered nucleic acid of paragraph 2 or 3, wherein the diseased cells are selected from breast cancer cells, colon cancer cells, and ovarian cancer cells.   5. The engineered nucleic acid of any one of paragraphs 1-4, wherein the promoter is operably linked to a nucleotide sequence encoding a therapeutic protein.   6. A cell comprising the engineered nucleic acid of any one of paragraphs 1-5.   7. A method of delivering to a cell the engineered nucleic acid of any one of paragraphs 1-5.   8. A method of delivering to a subject the engineered nucleic acid of any one of paragraphs 1-5.   9. A method of delivering to a subject the cell of paragraph 6.   10. The engineered nucleic acid of any one of paragraphs 1-5, wherein the nucleotide sequence is identified by any one of SEQ ID NO: 1-40 or a nucleotide sequences at least 95% identical to the nucleotide sequence identified by any one of SEQ ID NO: 1-40.   11. The engineered nucleic acid of paragraph 10, wherein the nucleotide sequence is identified by SEQ ID NO: 1.   12. The engineered nucleic acid of paragraph 10, wherein the nucleotide sequence is identified by SEQ ID NO: 2.   13. The engineered nucleic acid of paragraph 10, wherein the nucleotide sequence is identified by SEQ ID NO: 3.   14. The engineered nucleic acid of paragraph 10, wherein the nucleotide sequence is identified by SEQ ID NO: 4.   15. The engineered nucleic acid of paragraph 10, wherein the nucleotide sequence is identified by SEQ ID NO: 5.   16. The engineered nucleic acid of paragraph 10, wherein the nucleotide sequence is identified by SEQ ID NO: 6.   17. The engineered nucleic acid of paragraph 10, wherein the nucleotide sequence is identified by SEQ ID NO: 7.   18. The engineered nucleic acid of paragraph 10, wherein the nucleotide sequence is identified by SEQ ID NO: 8.   19. The engineered nucleic acid of paragraph 10, wherein the nucleotide sequence is identified by SEQ ID NO: 9.   20. The engineered nucleic acid of paragraph 10, wherein the nucleotide sequence is identified by SEQ ID NO: 10.   21. The engineered nucleic acid of paragraph 10, wherein the nucleotide sequence is identified by SEQ ID NO: 11.   22. The engineered nucleic acid of paragraph 10, wherein the nucleotide sequence is identified by SEQ ID NO: 12.   23. The engineered nucleic acid of paragraph 10, wherein the nucleotide sequence is identified by SEQ ID NO: 13.   24. The engineered nucleic acid of paragraph 10, wherein the nucleotide sequence is identified by SEQ ID NO: 14.   25. The engineered nucleic acid of paragraph 10, wherein the nucleotide sequence is identified by SEQ ID NO: 15.   26. The engineered nucleic acid of paragraph 10, wherein the nucleotide sequence is identified by SEQ ID NO: 16.   27. The engineered nucleic acid of paragraph 10, wherein the nucleotide sequence is identified by SEQ ID NO: 17.   28. The engineered nucleic acid of paragraph 10, wherein the nucleotide sequence is identified by SEQ ID NO: 18.   29. The engineered nucleic acid of paragraph 10, wherein the nucleotide sequence is identified by SEQ ID NO: 19.   30. The engineered nucleic acid of paragraph 10, wherein the nucleotide sequence is identified by SEQ ID NO: 20.   31. The engineered nucleic acid of paragraph 10, wherein the nucleotide sequence is identified by SEQ ID NO: 21.   32. The engineered nucleic acid of paragraph 10, wherein the nucleotide sequence is identified by SEQ ID NO: 22.   33. The engineered nucleic acid of paragraph 10, wherein the nucleotide sequence is identified by SEQ ID NO: 23.   34. The engineered nucleic acid of paragraph 10, wherein the nucleotide sequence is identified by SEQ ID NO: 24.   35. The engineered nucleic acid of paragraph 10, wherein the nucleotide sequence is identified by SEQ ID NO: 25.   36. The engineered nucleic acid of paragraph 10, wherein the nucleotide sequence is identified by SEQ ID NO: 26.   37. The engineered nucleic acid of paragraph 10, wherein the nucleotide sequence is identified by SEQ ID NO: 27.   38. The engineered nucleic acid of paragraph 10, wherein the nucleotide sequence is identified by SEQ ID NO: 28.   39. The engineered nucleic acid of paragraph 10, wherein the nucleotide sequence is identified by SEQ ID NO: 29.   40. The engineered nucleic acid of paragraph 10, wherein the nucleotide sequence is identified by SEQ ID NO: 30.   41. The engineered nucleic acid of paragraph 10, wherein the nucleotide sequence is identified by SEQ ID NO: 31.   42. The engineered nucleic acid of paragraph 10, wherein the nucleotide sequence is identified by SEQ ID NO: 32.   43. The engineered nucleic acid of paragraph 10, wherein the nucleotide sequence is identified by SEQ ID NO: 33.   44. The engineered nucleic acid of paragraph 10, wherein the nucleotide sequence is identified by SEQ ID NO: 34.   45. The engineered nucleic acid of paragraph 10, wherein the nucleotide sequence is identified by SEQ ID NO: 35.   46. The engineered nucleic acid of paragraph 10, wherein the nucleotide sequence is identified by SEQ ID NO: 36.   47. The engineered nucleic acid of paragraph 10, wherein the nucleotide sequence is identified by SEQ ID NO: 37.   48. The engineered nucleic acid of paragraph 10, wherein the nucleotide sequence is identified by SEQ ID NO: 38.   49. The engineered nucleic acid of paragraph 10, wherein the nucleotide sequence is identified by SEQ ID NO: 39.   50. The engineered nucleic acid of paragraph 10, wherein the nucleotide sequence is identified by SEQ ID NO: 40.   51. The engineered nucleic acid of any one of paragraphs 1-5, wherein the nucleotide sequence is identified by any one of SEQ ID NO: 41-49, or a nucleotide sequences at least 95% identical to the nucleotide sequence identified by any one of SEQ ID NO: 41-49.   52. The engineered nucleic acid of paragraph 51, wherein the nucleotide sequence is identified by SEQ ID NO: 41.   53. The engineered nucleic acid of paragraph 51, wherein the nucleotide sequence is identified by SEQ ID NO: 42.   54. The engineered nucleic acid of paragraph 51, wherein the nucleotide sequence is identified by SEQ ID NO: 43.   55. The engineered nucleic acid of paragraph 51, wherein the nucleotide sequence is identified by SEQ ID NO: 44.   56. The engineered nucleic acid of paragraph 51, wherein the nucleotide sequence is identified by SEQ ID NO: 45.   57. The engineered nucleic acid of paragraph 51, wherein the nucleotide sequence is identified by SEQ ID NO: 46.   58. The engineered nucleic acid of paragraph 51, wherein the nucleotide sequence is identified by SEQ ID NO: 47.   59. The engineered nucleic acid of paragraph 51, wherein the nucleotide sequence is identified by SEQ ID NO: 48.   60. The engineered nucleic acid of paragraph 51, wherein the nucleotide sequence is identified by SEQ ID NO: 49.   61. An oncolytic virus comprising the engineered nucleic acid of any one of paragraphs 1-5 or 10-60.   62. The oncolytic virus of paragraph 61, wherein the oncolytic virus is an oncolytic herpes simplex virus.   

     EXAMPLES 
     Example 1 
     Synthetic Promoter Activity and Specificity—Synthetic Promoters 1-40 
     Reporter constructs were constructed by placing the coding sequence of ECFP or mKate2 under the synthetic promoters. The reporter constructs were transfected into different cell lines as listed in Table 1. The expression of ECFP or mKate2 indicates the activity of the synthetic promoter in each cell line. The activities of a set of synthetic promoters (Table 2) were tested in different cell lines. The results are provided in  FIGS. 1-7 . 
                     TABLE 1                  Different Cell Lines for Testing Promoter Activity                                 #   Line   Type   Tissue   Organism                                         1   OVCAR8   cancer   ovarian   human       2   IOSE386   normal   ovarian   human       3   IOSE385   normal   ovarian   human       4   IOSE120   normal   ovarian   human       5   HCT116   cancer   Colorectal   human       6   CCD-841-Con   normal   Colon   human       7   SKBR3   cancer   breast   human       8   MDA-MB-453   cancer   breast   human       9   MDA-MB-231   cancer   breast   human       10   MCF-7   cancer   breast   human       11   MCF-10A   normal   breast   human       12   MCF-12A   normal   breast   human       13   aHDF   normal   adult dermal fibroblasts   human       14   NB508   cancer   pancreatic   mouse       15   4T1   cancer   breast   mouse                    
Examples of synthetic promoters used to regulate expression of ECFP:
 
     
       
         
           
               
             
               
                 TABLE 2 
               
             
            
               
                   
               
               
                 Synthetic Promoters 1-40 
               
            
           
           
               
               
               
            
               
                   
                   
                 SEQ ID 
               
               
                 Name 
                 Sequence 
                 NO 
               
               
                   
               
            
           
           
               
               
               
            
               
                 Synthetic 
                 CAGGGGATGCTTTAGGCGGGAAAGTCAGAGTTTCTGCCTCCAT 
                 1 
               
               
                 Promoter 
                 TTCCCAGGGGATGCTTTAGGCGGGAAAGTCAGAGTTTCTGCCT 
                   
               
               
                 1 
                 CCATTTGTCATGCATCTCAATTACCCAGGGGATGCTTTAGGCG 
                   
               
               
                   
                 GGAAAGTCAGAGTTTCTGCCTCCATTTCCCAGGGGATGCTTTA 
                   
               
               
                   
                 GGCGGGAAAGTCAGAGTTTCTGCCTCCATTT 
                   
               
               
                   
               
               
                 Synthetic 
                 CCCGTTTCCAGCCGAAACGTAGCCGTTTCGTACTCGAGCTTTG 
                 2 
               
               
                 Promoter 
                 GCGCATCCGTTTCCCGAATTCCCGAAACGTTCCTTTGGCGCTG 
                   
               
               
                 2 
                 CCCTACTGACACTGCCTGCGTTTCCAGCCGAAACGTAGCCGTT 
                   
               
               
                   
                 TCGTACTCGAGCTTTGGCGCATCCGTTTCCCGAATTCCCGAAA 
                   
               
               
                   
                 CGTTCCTTTGGCGC 
                   
               
               
                   
               
               
                 Synthetic 
                 CCCGTTTCCAGCCGAAACGTAGCCGTTTCGTACTCGAGCTTTG 
                 3 
               
               
                 Promoter 
                 GCGCATCCGTTTCCCGAATTCCCGAAACGTTCCTTTGGCGCTG 
                   
               
               
                 3 
                 CCCTACTGACACTGCCTGCGTTTCCAGCCGAAACGTAGCCGTT 
                   
               
               
                   
                 TCGTACTCGAGCTTTGGCGCATCCGTTTCCCGAATTCCCGAAA 
                   
               
               
                   
                 CGTTCCTTTGGCGCGGCGCGCCAGACGCTAGCGGGGGGCTATA 
                   
               
               
                   
                 AAAGGGGGTGGGGGCGTTCGTCCTCACTCTAGATCTGCGATCT 
                   
               
               
                   
                 AAGTAAGCTTGATATCGCGGCCGCCCCTGGACACCCTTGGAAG 
                   
               
               
                   
                 CAAATCCCCTGCAGGCCCGTTTCCAGCCGAAACGTAGCCGTTT 
                   
               
               
                   
                 CGTACTCGAGCTTTGGCGCATCCGTTTCCCGAATTCCCGAAAC 
                   
               
               
                   
                 GTTCCTTTGGCGCTGCCCTACTGACACTGCCTGCGTTTCCAGCC 
                   
               
               
                   
                 GAAACGTAGCCGTTTCGTACTCGAGCTTTGGCGCATCCGTTTC 
                   
               
               
                   
                 CCGAATTCCCGAAACGTTCCTTTGGCGC 
                   
               
               
                   
               
               
                 Synthetic 
                 CCGGTGACTCAGTAGCGGTGACTCAGAATCGATGACTCAGAC 
                 4 
               
               
                 Promoter 
                 AGTGACTAAGTACTATGAGTCAGGTCGAATGAGTCAGCGAGT 
                   
               
               
                 4 
                 GACTCAATGGTCCATGACTCACGAATTCCTGCCCTACTGACAC 
                   
               
               
                   
                 TGCCTGCCGGTGACTCAGTAGCGGTGACTCAGAATCGATGACT 
                   
               
               
                   
                 CAGACAGTGACTAAGTACTATGAGTCAGGTCGAATGAGTCAG 
                   
               
               
                   
                 CGAGTGACTCAATGGTCCATGACTCAGAATATCCGC 
                   
               
               
                   
               
               
                 Synthetic 
                 CCGGTGACTCAGTAGCGGTGACTCAGAATCGATGACTCAGAC 
                 5 
               
               
                 Promoter 
                 AGTGACTAAGTACTATGAGTCAGGTCGAATGAGTCAGCGAGT 
                   
               
               
                 5 
                 GACTCAATGGTCCATGACTCACGAATTCCTGCCCTACTGACAC 
                   
               
               
                   
                 TGCCTGCCGGTGACTCAGTAGCGGTGACTCAGAATCGATGACT 
                   
               
               
                   
                 CAGACAGTGACTAAGTACTATGAGTCAGGTCGAATGAGTCAG 
                   
               
               
                   
                 CGAGTGACTCAATGGTCCATGACTCAGAATATCCGCGGCTTGG 
                   
               
               
                   
                 AAGCAAATCCCCTGCAGGCCGGTGACTCAGTAGCGGTGACTC 
                   
               
               
                   
                 AGAATCGATGACTCAGACAGTGACTAAGTACTATGAGTCAGG 
                   
               
               
                   
                 TCGAATGAGTCAGCGAGTGACTCAATGGTCCATGACTCACGAA 
                   
               
               
                   
                 TTCCTGCCCTACTGACACTGCCTGCCGGTGACTCAGTAGCGGT 
                   
               
               
                   
                 GACTCAGAATCGATGACTCAGACAGTGACTAAGTACTATGAGT 
                   
               
               
                   
                 CAGGTCGAATGAGTCAGCGAGTGACTCAATGGTCCATGACTCA 
                   
               
               
                   
                 GAATATCCGC 
                   
               
               
                   
               
               
                 Synthetic 
                 TCCACACGTGCAAGCCGAGCACGTGGCTCATCACCACGAGTCA 
                 6 
               
               
                 Promoter 
                 GACAACCACGTGCTCACTGACCACGTGCCTGTCGGCCACGTGT 
                   
               
               
                 6 
                 GAGTCCACACGTGCATCCCGAGCACGTGGCTCCGAATTCCTGC 
                   
               
               
                   
                 CCTACTGACACTGCCTGCCGTCCACACGTGCAAGCCGAGCACG 
                   
               
               
                   
                 TGGCTCATCACCACGAGTCAGACAACCACGTGCTCACTGACCA 
                   
               
               
                   
                 CGTGCCTGTCGGCCACGTGTGAGTCCACACGTGCATCCCGAGC 
                   
               
               
                   
                 ACGTGGCTCCGAATATCCGC 
                   
               
               
                   
               
               
                 Synthetic 
                 CGTACGTGCGGCAGCCCGGACGTGCGCCATCTGCGTGAGGAC 
                 7 
               
               
                 Promoter 
                 GCGCGTGACAACTCGTACGTGCGGCGTCCCGGACGTGCGCCG 
                   
               
               
                 7 
                 AGTGCGTGAGTCCGCGCGTGACACCGAATTCCTGCCCTACTGA 
                   
               
               
                   
                 CACTGCCTGCCGCGTACGTGCGGCAGCCCGGACGTGCGCCATC 
                   
               
               
                   
                 TGCGTGAGGACGCGCGTGACAACTCGTACGTGCGGCGTCCCG 
                   
               
               
                   
                 GACGTGCGCCGAGTGCGTGAGTCCGCGCGTGACACCGAATAT 
                   
               
               
                   
                 CCGC 
                   
               
               
                   
               
               
                 Synthetic 
                 CTCATTTCAAAAAAGCCCCATTTAAGAGTATCCTCATTTCAGA 
                 8 
               
               
                 Promoter 
                 TTGACTATTTGGTAAACTATATTTGGCAATGCACGTCGTATTTT 
                   
               
               
                 8 
                 GCAATGGCTGAGCTCATTTCAAAAATCCCCCATTTAAGAGTCG 
                   
               
               
                   
                 AATTCCTGCCCTACTGACACTGCCTGCCGCTCATTTCAAAAAA 
                   
               
               
                   
                 GCCCCATTTAAGAGTATCTATTTGGTAAGACCTCATTTCAGATT 
                   
               
               
                   
                 ACTGTATTTTGCAATGGCTGTCATATTTGGCAATGCACGAGCC 
                   
               
               
                   
                 CATTTAAGAGTTCCCTCATTTCAAAAACGAATATCCGC 
                   
               
               
                   
               
               
                 Synthetic 
                 CCGCGAGGAGGCAGAGCTGACCACTAGATGGCAGTAATCTGG 
                 9 
               
               
                 Promoter 
                 CCACCAGAGGGCGCGACTCGCCACTAGGTGGCGCACTTGGCC 
                   
               
               
                 9 
                 ACCAGGGGGCGCCAGTCCCGCGAGGAGGCAGGAGTGGCCACC 
                   
               
               
                   
                 AGAGGGCGCCGAATTCCTGCCCTACTGACACTGCCTGCCGTCG 
                   
               
               
                   
                 CCACTAGGTGGCGCAGCTGGCCACCAGGGGGCGCCAGACCCG 
                   
               
               
                   
                 CGAGGAGGCAGACTTGACCACTAGATGGCAGTAGAGTGGCCA 
                   
               
               
                   
                 CCAGGGGGCGCCATCCTCGCCACTAGGTGGCGCCGAATATCCG 
                   
               
               
                   
                 C 
                   
               
               
                   
               
               
                 Synthetic 
                 CGACCATCTGGTAGCCGAACATCTGTTATCCGACCATCTGTTG 
                 10 
               
               
                 Promoter 
                 ACCCACCTGCCCGACTCCAGCTGCTCGGTCCGACCATCTGGTG 
                   
               
               
                 10 
                 AGCCACCTGCCCGTCCCGACCATCTGTTCGAATTCCTGCCCTA 
                   
               
               
                   
                 CTGACACTGCCTGCCGCCACCTGCCCGAGCCCAGCTGCTCGAT 
                   
               
               
                   
                 CCGACCATCTGGTGACCGAACATCTGTTACTCCAGCTGCTCGG 
                   
               
               
                   
                 TCCCACCTGCCCGGAGCCAGCTGCTCGTCCCGACCATCTGGTC 
                   
               
               
                   
                 GAATATCCGC 
                   
               
               
                   
               
               
                 Synthetic 
                 CTGATTGGCCAAAGCCTGATTGGCCAAATCCTGATTGGCCAAG 
                 11 
               
               
                 Promoter 
                 ACCTGATTGGCCAAACTCTGATTGGCCAAGTCTCTGATTGGCC 
                   
               
               
                 11 
                 AAGGAGCTGATTGGCCAATCCCTGATTGGCCAACGAATTCCTG 
                   
               
               
                   
                 CCCTACTGACACTGCCTGCCGCTGATTGGCCAAAGCCTGATTG 
                   
               
               
                   
                 GCCAAATCCTGATTGGCCAAGACCTGATTGGCCAAACTCTGAT 
                   
               
               
                   
                 TGGCCAAGTCCTGATTGGCCAAGAGCTGATTGGCCAATCCCTG 
                   
               
               
                   
                 ATTGGCCAACGAATATCCGC 
                   
               
               
                   
               
               
                 Synthetic 
                 AAACAGGAAGTTCGTAGCCCAACCGGAAGTATCAACCGGAAG 
                 12 
               
               
                 Promoter 
                 TAGACGACCGGAAGTAACTGACCGGAAGTAGTCGACCGGAAG 
                   
               
               
                 12 
                 TGGAGAAACAGGAAGTTCGTTCCCCAACCGGAAGTCGAATTC 
                   
               
               
                   
                 CTGCCCTACTGACACTGCCTGCCGGACCGGAAGTAAGCAACCG 
                   
               
               
                   
                 GAAGTAATCGACCGGAAGTGGACAAACAGGAAGTTCGTACTC 
                   
               
               
                   
                 CAACCGGAAGTGTCAACCGGAAGTAGAGGACCGGAAGTATCC 
                   
               
               
                   
                 GACCGGAAGTGCGAATATCCGC 
                   
               
               
                   
               
               
                 Synthetic 
                 GGCCCAGGGGATGCTTTAGGCGAGCGGCCCAGGGGATGCTTT 
                 13 
               
               
                 Promoter 
                 AGGCGATCGGCCCAGGGGATGCTTTAGGCGGACGGCCCAGGG 
                   
               
               
                 13 
                 GATGCTTTAGGCGACTGGCCCAGGGGATGCTTTAGGCGGTCGA 
                   
               
               
                   
                 ATTCCTGCCCTACTGACACTGCCTGCCGGGCCCAGGGGATGCT 
                   
               
               
                   
                 TTAGGCGAGCGGCCCAGGGGATGCTTTAGGCGATCGGCCCAG 
                   
               
               
                   
                 GGGATGCTTTAGGCGGACGGCCCAGGGGATGCTTTAGGCGGT 
                   
               
               
                   
                 CGGCCCAGGGGATGCTTTAGGCGCGAATATCCGC 
                   
               
               
                   
               
               
                 Synthetic 
                 CGGTTGCCATGGCAACCGAGCCGGTTTCCATGGAAACAAATCA 
                 14 
               
               
                 Promoter 
                 AGTTACTAGGCAAAAGGACCGGTTGCCATGGCAACCGACTAA 
                   
               
               
                 14 
                 GTTACTAGGCAAAAGGAGCGGTTTCCATGGAAACAATCCCGG 
                   
               
               
                   
                 TTGCCATGGCAACCGCGAATTCCTGCCCTACTGACACTGCCTG 
                   
               
               
                   
                 CCGAAGTTACTAGGCAAAAGAGCCGGTTGCCATGGCAACCGA 
                   
               
               
                   
                 TCCGGTTTCCATGGAAACAAGACCGGTTGCCATGGCAACCGAC 
                   
               
               
                   
                 TAAGTTACTAGGCAAAAGGTCCGGTTTCCATGGAAACAATCCG 
                   
               
               
                   
                 AATATCCGC 
                   
               
               
                   
               
               
                 Synthetic 
                 CCCAGGGGATGCTTTAGGCGGGAAAGTCAGAGTTTCTGCCTCC 
                 15 
               
               
                 Promoter 
                 ATTTCCCAGGGGATGCTTTAGGCGGGAAAGTCAGAGTTTCTGC 
                   
               
               
                 15 
                 CTCCATTTGTCATGCATCTCAATTACCCAGGGGATGCTTTAGG 
                   
               
               
                   
                 CGGGAAAGTCAGAGTTTCTGCCTCCATTTCCCAGGGGATGCTT 
                   
               
               
                   
                 TAGGCGGGAAAGTCAGAGTTTCTGCCTCCATTTGGCCTGCAGG 
                   
               
               
                   
                 CCCAGGGGATGCTTTAGGCGGGAAAGTCAGAGTTTCTGCCTCC 
                   
               
               
                   
                 ATTTCCCAGGGGATGCTTTAGGCGGGAAAGTCAGAGTTTCTGC 
                   
               
               
                   
                 CTCCATTTGTCATGCATCTCAATTACCCAGGGGATGCTTTAGG 
                   
               
               
                   
                 CGGGAAAGTCAGAGTTTCTGCCTCCATTTCCCAGGGGATGCTT 
                   
               
               
                   
                 TAGGCGGGAAAGTCAGAGTTTCTGCCTCCATTT 
                   
               
               
                   
               
               
                 Synthetic 
                 TAGGGTGGGCGTGGCAGCCGGGGCGGGGCATCTAGGGCGGGG 
                 16 
               
               
                 Promoter 
                 CCGACGGGGGGCGGGGCCACTTAGGGTGGGCGTGGCGTCCGG 
                   
               
               
                 16 
                 GGCGGGGCGAGTAGGGCGGGGCCTCCGGGGGGCGGGGCCCGA 
                   
               
               
                   
                 ATTCTGCCCTACTGACACTGCCTGCCGTAGGGTGGGCGTGGCA 
                   
               
               
                   
                 GCCGGGGCGGGGCATCTAGGGCGGGGCCGACGGGGGGCGGG 
                   
               
               
                   
                 GCCACTTAGGGTGGGCGTGGCGTCCGGGGCGGGGCGAGTAGG 
                   
               
               
                   
                 GCGGGGCCTCCGGGGGGCGGGGCCCGAATATCCGC 
                   
               
               
                   
               
               
                 Synthetic 
                 CGGGTGACGTCAACGGAGCGGGCTGACGTAAACGGATCTGAC 
                 17 
               
               
                 Promoter 
                 GTCAGACCAATGACGTCACGACTCGGGTGACGTCAACGGGTC 
                   
               
               
                 17 
                 GGGCTGACGTAAACGGGAGTGACGTCATCCCAATGACGTCAC 
                   
               
               
                   
                 GCGAATTCTGCCCTACTGACACTGCCTGCCGCGGGTGACGTCA 
                   
               
               
                   
                 ACGGAGCGGGCTGACGTAAACGGATCTGACGTCAGACCAATG 
                   
               
               
                   
                 ACGTCACGACTCGGGTGACGTCAACGGGTCGGGCTGACGTAA 
                   
               
               
                   
                 ACGGGAGTGACGTCATCCCAATGACGTCACGCGAATATCCGC 
                   
               
               
                   
               
               
                 Synthetic 
                 CGGGTGACGTCAACGGAGCGGGCTGACGTAAACGGATCTGAC 
                 18 
               
               
                 Promoter 
                 GTCAGACCAATGACGTCACGACTCGGGTGACGTCAACGGGTC 
                   
               
               
                 18 
                 GGGCTGACGTAAACGGGAGTGACGTCATCCCAATGACGTCAC 
                   
               
               
                   
                 GCGAATTCTGCCCTACTGACACTGCCTGCCGCGGGTGACGTCA 
                   
               
               
                   
                 ACGGAGCGGGCTGACGTAAACGGATCTGACGTCAGACCAATG 
                   
               
               
                   
                 ACGTCACGACTCGGGTGACGTCAACGGGTCGGGCTGACGTAA 
                   
               
               
                   
                 ACGGGAGTGACGTCATCCCAATGACGTCACGCGAATATCCGC 
                   
               
               
                   
               
               
                 Synthetic 
                 TACGCGCGAAAACTGAGCGCGCCAAAATCGCTGAGCGCGAAA 
                 18 
               
               
                 Promoter 
                 CGGACGGGGCGGGAAGACTTACGCGCGAAAACTGGTCGCGCC 
                   
               
               
                 19 
                 AAAGAGGCTGAGCGCGAAACGTCCGGGGCGGGAAGCGAATTC 
                   
               
               
                   
                 TGCCCTACTGACACTGCCTGCCGTACGCGCGAAAACTGAGCGC 
                   
               
               
                   
                 GCCAAAATCGCTGAGCGCGAAACGGACGGGGCGGGAAGACTT 
                   
               
               
                   
                 ACGCGCGAAAACTGGTCGCGCCAAAGAGGCTGAGCGCGAAAC 
                   
               
               
                   
                 GTCCGGGGCGGGAAGCGAATATCCGC 
                   
               
               
                   
               
               
                 Synthetic 
                 TCTGATGCAATAGCGGTATGATGCAAGGAATCAGATTGTGAA 
                 20 
               
               
                 Promoter 
                 ATGTGACATTGTGAAATAACTTCTGATGCAATGTCGGTATGAT 
                   
               
               
                 20 
                 GCAAGGAGAGAGATTGTGAAATGTTCCATTGTGAAATACGAA 
                   
               
               
                   
                 TTCTGCCCTACTGACACTGCCTGCCGTCTGATGCAATAGCGGT 
                   
               
               
                   
                 ATGATGCAAGGAATCAGATTGTGAAATGTGACATTGTGAAAT 
                   
               
               
                   
                 AACTTCTGATGCAATGTCGGTATGATGCAAGGAGAGAGATTGT 
                   
               
               
                   
                 GAAATGTTCCATTGTGAAATACGAATATCCGC 
                   
               
               
                   
               
               
                 Synthetic 
                 TCAGCCAATCAGAGAGCGAGCCAATCAGAATCCCAGCCAATC 
                 21 
               
               
                 Promoter 
                 AGAGACTGGGCCAATCAGAAACTTCAGCCAATCAGAGGTCGA 
                   
               
               
                 21 
                 GCCAATCAGAGAGCCAGCCAATCAGATCCTGGGCCAATCAGA 
                   
               
               
                   
                 ACGAATTCTGCCCTACTGACACTGCCTGCCGTCAGCCAATCAG 
                   
               
               
                   
                 AGAGCGAGCCAATCAGAATCCCAGCCAATCAGAGACTGGGCC 
                   
               
               
                   
                 AATCAGAAACTTCAGCCAATCAGAGGTCGAGCCAATCAGAGA 
                   
               
               
                   
                 GCCAGCCAATCAGATCCTGGGCCAATCAGAACGAATATCCGC 
                   
               
               
                   
               
               
                 Synthetic 
                 AGCCGCACGTGACAGCAGCCGCACGTGACATCCACCCACGTG 
                 22 
               
               
                 Promoter 
                 CGACCACCCACGTGCACTAGCCGCACGTGACCACAGCCGCAC 
                   
               
               
                 22 
                 GTGACGAGCACCCACGTGCTCCCACCCACGTGCCGAATTCTGC 
                   
               
               
                   
                 CCTACTGACACTGCCTGCCGAGCCGCACGTGACAGCAGCCGCA 
                   
               
               
                   
                 CGTGACATCCACCCACGTGCGACCACCCACGTGCACTAGCCGC 
                   
               
               
                   
                 ACGTGACCATCAGCCGCACGTGACGAGCACCCACGTGCTCCCA 
                   
               
               
                   
                 CCCACGTGCCGAATATCCGC 
                   
               
               
                   
               
               
                 Synthetic 
                 GACCACGTGGAAGCGACCACGTGGAATCCGCCACGTGCGCGA 
                 23 
               
               
                 Promoter 
                 CCGCCACGTGCGCACTAGACCACGTGGTCGTCAGACCACGTGG 
                   
               
               
                 23 
                 TCGAGAAAACACGTGGTTCCAAAACACGTGGTCGAATTCTGCC 
                   
               
               
                   
                 CTACTGACACTGCCTGCCGGACCACGTGGAAGCGACCACGTG 
                   
               
               
                   
                 GAATCCGCCACGTGCGCGACCGCCACGTGCGCACTAGACCAC 
                   
               
               
                   
                 GTGGTCGTCAGACCACGTGGTCGAGAAAACACGTGGTTCCAA 
                   
               
               
                   
                 AACACGTGGTCGAATATCCGCG 
                   
               
               
                   
               
               
                 Synthetic 
                 TAGCCTGGGGCCGAGCTAGCCTGGGGCCGATCACCGCCTGAG 
                 24 
               
               
                 Promoter 
                 GGGAGACACCGCCTGAGGGGAACTTGCCCTGGGGCCGTCTGC 
                   
               
               
                 24 
                 CCTGGGGCCGAGTTGCCCTAGGGCATTCCTTGCCCTAGGGCAT 
                   
               
               
                   
                 CGAATTCTGCCCTACTGACACTGCCTGCCGTAGCCTGGGGCCG 
                   
               
               
                   
                 AGCTAGCCTGGGGCCGATCACCGCCTGAGGGGAGACACCGCC 
                   
               
               
                   
                 TGAGGGGAACTTGCCCTGGGGCCGTCTGCCCTGGGGCCGAGTT 
                   
               
               
                   
                 GCCCTAGGGCATTCCTTGCCCTAGGGCATCGAATATCCGC 
                   
               
               
                   
               
               
                 Synthetic 
                 GGGAATTCCCAGCGGGAATTCCCATCGGGGACTTTCCAGACGG 
                 25 
               
               
                 Promoter 
                 GGACTTTCCAACTGGGAATTCCCGTCGGGAATTCCCGAGGGGG 
                   
               
               
                 25 
                 ACTTTCCATCCGGGGACTTTCCACGAATTCTGCCCTACTGACA 
                   
               
               
                   
                 CTGCCTGCCGGGGAATTCCCAGCGGGAATTCCCATCGGGGACT 
                   
               
               
                   
                 TTCCAGACGGGGACTTTCCAACTGGGAATTCCCGTCGGGAATT 
                   
               
               
                   
                 CCCGAGGGGGACTTTCCATCCGGGGACTTTCCACGAATATCCG 
                   
               
               
                   
                 C 
                   
               
               
                   
               
               
                 Synthetic 
                 AGCGCATTTCCCGGAAATGATATCTATTCCAGGAACTGACTAT 
                 26 
               
               
                 Promoter 
                 TCCAGGAACTACTGCATTTCCCGGAAATGATGTCGCATTTCCC 
                   
               
               
                 26 
                 GGAAATGATGAGTATTCCAGGAACTTCCTATTCCAGGAACTCG 
                   
               
               
                   
                 AATTCTGCCCTACTGACACTGCCTGCCGGCATTTCCCGGAAAT 
                   
               
               
                   
                 GATAGCGCATTTCCCGGAAATGATACTATTCCAGGAACTACTG 
                   
               
               
                   
                 CATTTCCCGGAAATGATGTCGCATTTCCCGGAAATGATGAGTA 
                   
               
               
                   
                 TTCCAGGAACTTCCTATTCCAGGAACTCGAATATCCG 
                   
               
               
                   
               
               
                 Synthetic 
                 ATGCGTGGGCGTAGCATGCGTGGGCGTATCCGCGGCGGGGGC 
                 27 
               
               
                 Promoter 
                 GGAGGACCGCGGCGGGGGCGGAGACTAATGCGGGGGCGGAG 
                   
               
               
                 27 
                 TCAATGCGGGGGCGGAGAGGGGCGGGGGCGGGGCCTCCGGGC 
                   
               
               
                   
                 GGGGGCGGGGCCCGAATTCTGCCCTACTGACACTGCCTGCCGA 
                   
               
               
                   
                 TGCGTGGGCGTACATGCGTGGGCGTATCCGCGGCGGGGGCGG 
                   
               
               
                   
                 AGGCCGCGGCGGGGGCGGAGCTAATGCGGGGGCGGAGTCAAT 
                   
               
               
                   
                 GCGGGGGCGGAGAGGGGCGGGGGCGGGGCCTCCGGGCGGGG 
                   
               
               
                   
                 GCGGGGCCCGAATATCCGC 
                   
               
               
                   
               
               
                 Synthetic 
                 GCGCCAAAGGAACGTTTCGGGAATTCGGGAAACGGATGCGCC 
                 28 
               
               
                 Promoter 
                 AAAGCTCGAGTACGAAACGGCTACGTTTCGGCTGGAAACGCA 
                   
               
               
                 28 
                 GGCAGTGTCAGTAGGGCAGCGCCAAAGGAACGTTTCGGGAAT 
                   
               
               
                   
                 TCGGGAAACGGATGCGCCAAAGCTCGAGTACGAAACGGCTAC 
                   
               
               
                   
                 GTTTCGGCTGGAAACGGG 
                   
               
               
                   
               
               
                 Synthetic 
                 GCGCCAAAGGAACGTTTCGGGAATTCGGGAAACGGATGCGCC 
                 29 
               
               
                 Promoter 
                 AAAGCTCGAGTACGAAACGGCTACGTTTCGGCTGGAAACGCA 
                   
               
               
                 29 
                 GGCAGTGTCAGTAGGGCAGCGCCAAAGGAACGTTTCGGGAAT 
                   
               
               
                   
                 TCGGGAAACGGATGCGCCAAAGCTCGAGTACGAAACGGCTAC 
                   
               
               
                   
                 GTTTCGGCTGGAAACGCAGGCAGTGTCAGTAGGGCAGCGCCA 
                   
               
               
                   
                 AAGGAACGTTTCGGGAATTCGGGAAACGGATGCGCCAAAGCT 
                   
               
               
                   
                 CGAGTACGAAACGGCTACGTTTCGGCTGGAAACGCAGGCAGT 
                   
               
               
                   
                 GTCAGTAGGGCAGCGCCAAAGGAACGTTTCGGGAATTCGGGA 
                   
               
               
                   
                 AACGGATGCGCCAAAGCTCGAGTACGAAACGGCTACGTTTCG 
                   
               
               
                   
                 GCTGGAAACGGG 
                   
               
               
                   
               
               
                 Synthetic 
                 GCGGATATTCGGCGCCACCTAGTGGCGAGGATGGCGCCCCCTG 
                 30 
               
               
                 Promoter 
                 GTGGCCACTCTACTGCCATCTAGTGGTCAAGTCTGCCTCCTCG 
                   
               
               
                 30 
                 CGGGTCTGGCGCCCCCTGGTGGCCAGCTGCGCCACCTAGTGGC 
                   
               
               
                   
                 GACGGCAGGCAGTGTCAGTAGGGCAGGAATTCGGCGCCCTCT 
                   
               
               
                   
                 GGTGGCCACTCCTGCCTCCTCGCGGGACTGGCGCCCCCTGGTG 
                   
               
               
                   
                 GCCAAGTGCGCCACCTAGTGGCGAGTCGCGCCCTCTGGTGGCC 
                   
               
               
                   
                 AGATTACTGCCATCTAGTGGTCAGCTCTGCCTCCTCGCGG 
                   
               
               
                   
               
               
                 Synthetic 
                 GCGGATATTCGACCAGATGGTCGGGACGAGCAGCTGGCTCCG 
                 31 
               
               
                 Promoter 
                 GGCAGGTGGGACCGAGCAGCTGGAGTAACAGATGTTCGGTCA 
                   
               
               
                 31 
                 CCAGATGGTCGGATCGAGCAGCTGGGCTCGGGCAGGTGGCGG 
                   
               
               
                   
                 CAGGCAGTGTCAGTAGGGCAGGAATTCGAACAGATGGTCGGG 
                   
               
               
                   
                 ACGGGCAGGTGGCTCACCAGATGGTCGGACCGAGCAGCTGGA 
                   
               
               
                   
                 GTCGGGCAGGTGGGTCAACAGATGGTCGGATAACAGATGTTC 
                   
               
               
                   
                 GGCTACCAGATGGTCG 
                   
               
               
                   
               
               
                 Synthetic 
                 GACCACGTGGAAAGCGACCACGTGGAAATCGACCACGTGGAA 
                 32 
               
               
                 Promoter 
                 GACGACCACGTGGAAACTGACCACGTGGAAGTCGACCACGTG 
                   
               
               
                 32 
                 GAAGAGGACCACGTGGAATCCGACCACGTGGAAGAATTCTGC 
                   
               
               
                   
                 CCTACTGACACTGCCTGCCGGACCACGTGGAAAGCGACCACGT 
                   
               
               
                   
                 GGAAATCGACCACGTGGAAGACGACCACGTGGAAACTGACCA 
                   
               
               
                   
                 CGTGGAAGTCGACCACGTGGAAGAGGACCACGTGGAATCCGA 
                   
               
               
                   
                 CCACGTGGAACGAATATCCGC 
                   
               
               
                   
               
               
                 Synthetic 
                 TCCGCCACGTGCGCGACGACTCCGCCACGTGCGCGACACTTCC 
                 33 
               
               
                 Promoter 
                 GCCACGTGCGCGACGTCTCCGCCACGTGCGCGACGAGTCCGCC 
                   
               
               
                 33 
                 ACGTGCGCGACTCCTCCGCCACGTGCGCGACCGAATTCTGCCC 
                   
               
               
                   
                 TACTGACACTGCCTGCCGTCCGCCACGTGCGCGACGACTCCGC 
                   
               
               
                   
                 CACGTGCGCGACACTTCCGCCACGTGCGCGACGTCTCCGCCAC 
                   
               
               
                   
                 GTGCGCGACGAGTCCGCCACGTGCGCGACTCCTCCGCCACGTG 
                   
               
               
                   
                 CGCGACCGAATATCCGC 
                   
               
               
                   
               
               
                 Synthetic 
                 AGACCACGTGGTCAGCAGACCACGTGGTCATCAGACCACGTG 
                 34 
               
               
                 Promoter 
                 GTCGACAGACCACGTGGTCACTAGACCACGTGGTCGTCAGACC 
                   
               
               
                 34 
                 ACGTGGTCGAGAGACCACGTGGTCTCCAGACCACGTGGTCCG 
                   
               
               
                   
                 AATTCTGCCCTACTGACACTGCCTGCCGAGACCACGTGGTCAG 
                   
               
               
                   
                 CAGACCACGTGGTCATCAGACCACGTGGTCGACAGACCACGT 
                   
               
               
                   
                 GGTCACTAGACCACGTGGTCGTCAGACCACGTGGTCGAGAGA 
                   
               
               
                   
                 CCACGTGGTCTCCAGACCACGTGGTCCGAATATCCGC 
                   
               
               
                   
               
               
                 Synthetic 
                 AAAACACGTGGTAGCAAAACACGTGGTATCAAAACACGTGGT 
                 35 
               
               
                 Promoter 
                 GACAAAACACGTGGTACTAAAACACGTGGTGTCAAAACACGT 
                   
               
               
                 35 
                 GGTGAGAAAACACGTGGTTCCAAAACACGTGGTCGAATTCTG 
                   
               
               
                   
                 CCCTACTGACACTGCCTGCCGAAAACACGTGGTAGCAAAACA 
                   
               
               
                   
                 CGTGGTATCAAAACACGTGGTGACAAAACACGTGGTACTAAA 
                   
               
               
                   
                 ACACGTGGTGTCAAAACACGTGGTGAGAAAACACGTGGTTCC 
                   
               
               
                   
                 AAAACACGTGGTCGAATATCCGC 
                   
               
               
                   
               
               
                 Synthetic 
                 GTCCGCCACGTGCGCGACAGTCCGCCACGTGCGCGACTGGTCC 
                 36 
               
               
                 Promoter 
                 GCCACGTGCGCGACCGTCCGCCACGTGCGCGACCGGTCCGCCA 
                   
               
               
                 36 
                 CGTGCGCGACCGTCCGCCACGTGCGCGACGTGTCCGCCACGTG 
                   
               
               
                   
                 CGCGCC 
                   
               
               
                   
               
               
                 Synthetic 
                 TTCCGCCACGTGGCGGAAGTTCCGCCACGTGGCGGAATTCCGC 
                 37 
               
               
                 Promoter 
                 CACGTGGCGGAAATTCCGCCACGTGGCGGAATTCCGCCACGTG 
                   
               
               
                 37 
                 GCGGAATTTCCGCCACGTGGCGGAATTCCGCCACGTGGCGGA 
                   
               
               
                   
                 ACC 
                   
               
               
                   
               
               
                 Synthetic 
                 GCCACGTGAGCGCCACGTGATCGCCACGTGGACGCCACGTGA 
                 38 
               
               
                 Promoter 
                 CTGCCACGTGAGTGCCACGTGGTCGCCACGTGGATGCCACGTG 
                   
               
               
                 38 
                 GCTGCCACGTG 
                   
               
               
                   
               
               
                 Synthetic 
                 GCGGATATTCGACCACGTGTTTTGGAACCACGTGTTTTCTCGA 
                 39 
               
               
                 Promoter 
                 CCACGTGGTCTGACGACCACGTGGTCTAGTGCGCACGTGGCGG 
                   
               
               
                 39 
                 TCGCGCACGTGGCGGATTCCACGTGGTCGCTTCCACGTGGTCC 
                   
               
               
                   
                 GGCAGGCAGTGTCAGTAGGGCAGAATTCGACCACGTGTTTTGG 
                   
               
               
                   
                 AACCACGTGTTTTCTCGACCACGTGGTCTGACGACCACGTGGT 
                   
               
               
                   
                 CTAGTGCGCACGTGGCGGTCGCGCACGTGGCGGATTCCACGTG 
                   
               
               
                   
                 GTCGCTTCCACGTGGTCC 
                   
               
               
                   
               
               
                 Synthetic 
                 GGCCGCCCTGCACCTGCAGGGACCACGTGGAAGCGACCACGT 
                 40 
               
               
                 Promoter 
                 GGAATCCGCCACGTGCGCGACCGCCACGTGCGCACTAGACCA 
                   
               
               
                 40 
                 CGTGGTCGTCAGACCACGTGGTCGAGAAAACACGTGGTTCCA 
                   
               
               
                   
                 AAACACGTGGTCGAATTCTGCCCTACTGACACTGCCTGCCGGA 
                   
               
               
                   
                 CCACGTGGAAGCGACCACGTGGAATCCGCCACGTGCGCGACC 
                   
               
               
                   
                 GCCACGTGCGCACTAGACCACGTGGTCGTCAGACCACGTGGTC 
                   
               
               
                   
                 GAGAAAACACGTGGTTCCAAAACACGTGGTCGAATATCCGCG 
                   
               
               
                   
                 GCGCGCCAGACGTGCAGGGACCACGTGGAAGCGACCACGTGG 
                   
               
               
                   
                 AATCCGCCACGTGCGCGACCGCCACGTGCGCACTAGACCACGT 
                   
               
               
                   
                 GGTCGTCAGACCACGTGGTCGAGAAAACACGTGGTTCCAAAA 
                   
               
               
                   
                 CACGTGGTCGAATTCTGCCCTACTGACACTGCCTGCCGGACCA 
                   
               
               
                   
                 CGTGGAAGCGACCACGTGGAATCCGCCACGTGCGCGACCGCC 
                   
               
               
                   
                 ACGTGCGCACTAGACCACGTGGTCGTCAGACCACGTGGTCGA 
                   
               
               
                   
                 GAAAACACGTGGTTCCAAAACACGTGGTCGAATATCCGCGGC 
                   
               
               
                   
                 GCGCCAGAC 
               
               
                   
               
            
           
         
       
     
     Example 2 
     Synthetic Promoter Activity and Specificity—Synthetic Promoters 41-49 
     Reporter constructs were created by placing the coding sequence of mKate2 under the control of selected promoters from the library (synthetic promoters 41-49). The reporter constructs were transfected into different cell lines as listed in Table 3. P119 are negative control cells and p153 are mKate2 positive cells expressing mKate2 under the strong hUbC promoter. 
     The expression of mKate2 indicates the activity of a synthetic promoter in each cell line. The results were provided in  FIG. 8  and Table 2. Synthetic promoters 41 and 44 were found to be more active than other synthetic promoters tested in tumor cell lines. Interestingly, both synthetic promoter 41 and 44 have binding motifs for tumor-specific TFs, including CREB, EGR1, SP1 and E2F1. The activities of another set of synthetic promoters were tested in different cell lines, as indicated in Table 3. 
     
       
         
           
               
             
               
                 TABLE 3 
               
             
            
               
                   
               
               
                 Synthetic Promoter Activity in Different Cell Lines 
               
            
           
           
               
               
               
               
               
            
               
                   
                   
                 NB508 
                 4T1 
                 OVCAR8 
               
               
                   
                   
                 AVRG 
                 AVRG 
                 AVRG 
               
               
                   
                   
                 mKate2 
                 mKate2 
                 mKate2 
               
               
                   
                   
               
            
           
           
               
               
               
               
               
            
               
                   
                 p119 
                 35 
                 56 
                 50 
               
               
                   
                 p153 
                 21200 
                 14200 
                 79800 
               
               
                   
                 Synthetic Promoter 41 
                 1203 
                 677 
                 13400 
               
               
                   
                 Synthetic Promoter 42 
                 39 
                 60 
                 73 
               
               
                   
                 Synthetic Promoter 43 
                 42 
                 62 
                 93 
               
               
                   
                 Synthetic Promoter 44 
                 1743 
                 1555 
                 2956 
               
               
                   
                 Synthetic Promoter 45 
                 42 
                 59 
                 137 
               
               
                   
                 Synthetic Promoter 46 
                 39 
                 54 
                 75 
               
               
                   
                 Synthetic Promoter 47 
                 72 
                 82 
                 507 
               
               
                   
                 Synthetic Promoter 48 
                 139 
                 110 
                 3553 
               
               
                   
                 Synthetic Promoter 49 
                 53 
                 64 
                 246 
               
               
                   
                   
               
            
           
         
       
     
     
       
         
           
               
             
               
                 TABLE 4 
               
             
            
               
                   
               
               
                 Synthetic Promoters 41-49 
               
            
           
           
               
               
               
            
               
                 Name 
                 Sequence 
                 SEQ ID NO. 
               
               
                   
               
               
                 Synthetic Promoter 41 
                 GACGCCATGACGCATGACGCCATGACGCCATGACGCCA 
                 41 
               
               
                   
                 TGACGCCATGACGCCATGACGCATGACGCCATGACGCC 
                   
               
               
                   
                 ATGACGCCATTACGCCAT 
                   
               
               
                   
               
               
                 Synthetic Promoter 42 
                 GGGGGTCCAGCGGGGGTCCATCGGGGGTCCGACGGGGG 
                 42 
               
               
                   
                 TCCACTGGGGGTCCAGTGGGGGTCCGTCGGGGGTCCGAT 
                   
               
               
                   
                 GGGGGTCCGCTGGGGGTCC 
                   
               
               
                   
               
               
                 Synthetic Promoter 43 
                 AGTGGGGTAGCAGTGGGTATCAGTGGGGTGACAGTGGG 
                 43 
               
               
                   
                 GTACTAGTGGGGTAGTAGTGGGGTGTCAGTGGGGTGAT 
                   
               
               
                   
                 AGTGGGGTGCTAGTGGGGT 
                   
               
               
                   
               
               
                 Synthetic Promoter 44 
                 GTGCCCGCGTAATCCCGCCCGCGTAGACCCGCCCGCGTA 
                 44 
               
               
                   
                 ACTCCGCCCGCGTAAGTCCGCCCGCGTAGTCCCGCCCGC 
                   
               
               
                   
                 GTAGATCCGCCCGCGTA 
                   
               
               
                   
               
               
                 Synthetic Promoter 45 
                 GAGACATAGAGACATAGAGACATAGAGACATAGAGACA 
                 45 
               
               
                   
                 TAGAGACATAGAGACATAGAGACATAGAGACATAGAGA 
                   
               
               
                   
                 CATAGAGACATAGAGACATA 
                   
               
               
                   
               
               
                 Synthetic Promoter 46 
                 CACTGGGTCACGGGGTCACGGGGTCACGGGGTCACGGG 
                 46 
               
               
                   
                 GTCACGGGGTCACGGGGTCACGGGGTCACGGGGTCACG 
                   
               
               
                   
                 GGGTCACGGGGT 
                   
               
               
                   
               
               
                 Synthetic Promoter 47 
                 GGGAATGAGGGAATGAGGGAATGAGGGAATGAGGGAA 
                 47 
               
               
                   
                 TGAGGGAATGAGGGAATGAGGGAATGAGGGAATGTGGG 
                   
               
               
                   
                 AATGTGGGAATGTGGGAATGT 
                   
               
               
                   
               
               
                 Synthetic Promoter 48 
                 GAAGGCAGGAAGGCAGGAAGGCAGGAAGGCAGGAAGG 
                 48 
               
               
                   
                 CAGGAAGGCAGGAAGGCAGGAAGGCAGGAAGGCAGGA 
                   
               
               
                   
                 AGGCAGGAAGGCAGGAAGGCAG 
                   
               
               
                   
               
               
                 Synthetic Promoter 49 
                 GGGCCAAATGGATCGGGCCAAATGGGACGGGGCAAATG 
                 49 
               
               
                   
                 GACTGGGCAAATGGAGTGGGGCAAATGGGTCGGGCAAA 
                   
               
               
                   
                 TGGGATGGGGCAAATGG 
               
               
                   
               
            
           
         
       
     
     Example 3 
     MDA-MB-453-Specific Promoter Expression 
     Two synthetic promoters, S(USF1)p and S(MAFK)p, were designed to specifically target the MDA-MB-453 breast cancer cell line, but not the MCF-10A non-tumorigenic mammary epithelial cell line. mKate2 outputs generated by each promoter individually were compared to a control (G8-Pe) in both cell lines. S(USF1)p and S(MAFK)p generated a high output only in MDA-MB-453 cells ( FIG. 9 ) (see also Nissim, L. et al.  Cell  2017; 171: 1138-1150 is incorporated herein by reference). 
     
       
         
           
               
            
               
                 S(USF1)p 
               
               
                 (SEQ ID NO: 12266) 
               
               
                   CCACGTGC AGA CCACGTGC TCG CCACGTGC GAC CCACGTGC CT ACCACGT   
               
               
                   
               
               
                   GC ACT CCACGTGC TGC CCACGTGC GTA CCACGTGC G 
               
               
                   
               
               
                 S(MAFK)p 
               
               
                 (SEQ ID NO: 12268) 
               
               
                   TGCTGAGTCAGCA AGA TGCTGAGTCAGCA TCG TGCTGAGTCAGCA GAC TG   
               
               
                   
               
               
                   CTGAGTCAGCA CTA TGCTGAGTCAGCA ACT TGCTGAGTCAGCA TGC TGCT   
               
               
                   
               
               
                   GAGTCAGCA GTA TGCTGAGTCAGCA G 
               
            
           
         
       
     
     Example 4 
     Synthetic Promoter Activity and Specificity 
     Reporter constructs were created by placing the coding sequence of mKate2 under the control of selected promoters from the library (see  FIG. 10 ). The reporter constructs were transfected into different cell lines: 10A (normal breast tissue cells) or MDA (cancerous breast tissue cells). 
     The expression of mKate2 indicates the activity of a synthetic promoter in each cell line. The results are provided in  FIG. 10 . A subset of the synthetic promoters was found to be more active in the tumor cell line than the other synthetic promoters tested. 
     Example 5 
     The synthetic promoter library was tested in a human induced pluripotent stem cell line (GATA6-hiPSCs) that forms a liver bud-like organoid upon doxycycline-inducible GATA6 expression (Guye, P. et al. Nature Communications, 2016, incorporated herein by reference). 2D organoids were prepared by seeding 25,000 GATA6-hiPSCs/cm 2  in a flat-bottom, matrigel-coated tissue-culture plate. Differentiation followed the previously described protocol (Guye, P. et al. Nature Communications, 2016) and was initiated by addition of 1000 ng/mL doxycycline (dox) for 5 days. On day 5, organoids were transduced with an equimolar mix of the synthetic promoter library and a transduction control. The viral titer was qualitatively adjusted such that &lt;15% of the population expressed the transduction marker. Differentiation continued for a total of 16 days after which organoids were washed with PBS and dissociated with Accutase to a single cell suspension. Cells were centrifuged (3 min at 300×g) and resuspended in APEL 2 Medium (StemCell Technologies). The resuspended cells were sorted by FACS (BD FACS Aria, BD Biosciences) into an mKate positive and negative population with manually defined gates. Extraction of genomic DNA (gDNA) was done as for all other samples. 
     Using the gDNA from the mKate positive population, we amplified the synthetic promoters by PCR as described for the other samples with the exception that 50 cycles were necessary. The amplified promoter library and pLN490 were digested with Asci and Sbfl and gel purified. The digested and purified promoters and pLN490 backbone were ligated and transformed into  E. coli  and selected for by ampicillin. Colonies were picked and submitted for Sanger sequencing to identify synthetic promoters that led to mKate expression in the organoids. Candidate promoters identified from Sanger sequencing were verified in triplicate. Verification was done by transducing undifferentiated GATA6-hiPSCs with a lentivirus expressing the particular promoter upstream of mKate2. Transductions were done with 2 μg/mL polybrene and qualitatively assessed to lead to mKate2 expression in more than 90% of the GATA6-hiPSCs. Organoids were differentiated as above and imaged daily for 20 days using a Leica TCS SP5 II confocal microscope. Each promoter was also expressed in GATA6-hiPSCs that were kept undifferentiated for &gt;5 days by culturing cells in mTeSR1 without the addition of dox. 
     Expression of the synthetic promoter library in a liver bud-like organoid derived through GATA6 expression in hiPSCs, led to the identification of 37 different candidate promoters from a pool of 1396 mKate positive cells. Each promoter was individually verified by transduction of GATA6-hiPSCs with the particular promoter and repeating the differentiation to a liver bud-like organoid. We verified 18 of these promoters in triplicate and found 7 of them to be mKate2 positive in all samples. 2 of the promoters were only mKate2 positive in duplicate. Among these 9 promoters with mKate2 activity, 8 also had detectable activity in undifferentiated GATA6-hiPSCs (activity could be verified in triplicate for 4 promoters, duplicate for 1, and single sample only for 3 promoters). However, their activity in GATA6-hiPSCs were generally limited to clusters of with few cells, indicating that there might be subtle differences in the transcription factor profile of these undifferentiated stem cell. 
     The synthetic promoters with RELA, STAT_disc5, HIF1A and TP53 binding sites showed consistent behavior across all triplicates. The activity and pattern of these promoters changed between days, implying cell type-specific promoter activity. Moreover, the pattern, strength and number of cells in which the promoter was active also varied. For instance, the HIF1A promoter appeared active in large globular similar to previously identified ectoderm-derived cells (P. Guye, 2016). Moreover, the signal shows a pattern within these globular structures, indicating further cell type-specificity. The mKate2 expression appeared suddenly late in organoid development (≈day 15) and gradually disappear. As the signal faded from the putative ectoderm regions, it would begin to appear in nearby regions of the organoid that favored a flat structure. 
     TP53, and STAT_disc5 were both active early on during organoid development and with no apparent preference for morphologically distinct cells. TP53 was widely active in hiPSCs and the early (day 2) organoid. The frequency of mKate2 positive cells faded over time, albeit the signal remained strong in the few positive cells that remained. STAT_disc5 was not active in hiPSCs, but turned on around day 3 and peaked at day 4/5. It then gradually turned off as the organoid matured and had effectively disappeared on day 12. 
     RELA turned on strongly, first in a few cells around day 4, but continuously spread to a larger fraction of the cell population over the duration of the experiment. The promoter appeared to favor certain regions with a flat morphology. Moreover, several cells—based on their mKate2 fluorescence—showed a long, thin shape which is morphologically distinct from the pattern observed from other promoters. 
     Overall, verification of mKate2 expression from the candidate promoters also revealed heterogeneous expression of the promoters that generally required screening multiple regions of each organoid to identify an mKate positive region. This implies that morphologically similar regions might still show subtle differences in TF profiles that affects transcription from the synthetic promoter. Altogether, the replicated temporal, spatial and morphological observations indicate a non-random preference for certain cell types that appear and mature during development of a liver bud-like organoid. 
     The previously described method to differentiate hiPSCs to a liver bud-like organoid results in a heterogeneous and diverse cell composition within the organoid with cell lineages arising from all three different germ layers. This cell type heterogeneity made the organoid ideal as a platform to test the cell-type preference of the synthetic promoter library. 
     Changes in the TF profile of a specific cells is quintessential to cell differentiation and maturation, and the synthetic promoters are expected to exploit this change, thereby providing a platform for cell-type specific gene regulation. Indeed, we find that a few candidate promoters show temporal specificity towards certain morphologically distinct regions within the organoid. However, the promoter activity often differs between morphologically similar regions implying the promoters may be very sensitive towards changes in TF activity between cell types. With thorough screening and a more targeted search for specific cell populations, the synthetic promoters are a powerful tool for regulating gene networks in subpopulations of heterogeneous cell populations. 
     
       
         
           
               
             
               
                 TABLE 5 
               
             
            
               
                   
               
               
                 Transcription Factor Binding Sites of Synthetic Promoters 
               
            
           
           
               
               
               
            
               
                 Name 
                 Binding Site Sequence 
                 Reverse Complement 
               
               
                   
               
               
                 EOMES_EOMES_f1_HocoMoco 
                 ATTTCGTATCCCCG 
                 CGGGGATACGAAAT 
               
               
                   
               
               
                 LHX9_LHX2_2_SELEX|LHX2_3 
                 TAATTACGCTAATTA 
                 TAATTAGCGTAATTA 
               
               
                   
               
               
                 HOXC5_Zen_Cell_FBgn0004053_B1H 
                 CCCTAATGA 
                 TCATTAGGG 
               
               
                   
               
               
                 BARHL2_MA0171.1_B1H|NKX2- 
                 CAATTAA 
                 TTAATTG 
               
               
                 5_MA0063.1_SELEX|ISL2_MA0248.1_B1H|BARHL2_MA01 
                   
                   
               
               
                 68.1_B1H|HMX1_Hmx_SOLEXA_FBgn0085448_B1H|BSX_ 
                   
                   
               
               
                 MA0214.1_B1H|ISL2_Tup_SOLEXA_FBgn0003896_B1H|SH 
                   
                   
               
               
                 OX_PRRX2_f1_HocoMoco|SHOX_MA0250.1_B1H|HMX1_ 
                   
                   
               
               
                 Hmx_Cell_FBgn0085448_B1H|ISL2_Isl2_3430_PBM|BARH 
                   
                   
               
               
                 L2_MA0169.1_B1H|HMX1_MA0192.1_B1H|NKX2-5_4 
                   
                   
               
               
                   
               
               
                 NKX2-5_NKX28_f1_HocoMoco 
                 GTCCTTGAA 
                 TTCAAGGAC 
               
               
                   
               
               
                 EN2_V$EN1_01_Transfac|EN1_1 
                 CAATTAC 
                 GTAATTG 
               
               
                   
               
               
                 NR1l3_NR1l3_f2_HocoMoco 
                 CTGAACTTTCCTGACCCC 
                 GGGGTCAGGAAAGTTC 
               
               
                   
                   
                 AG 
               
               
                   
               
               
                 MSX1_Msx1_3031_PBM|GBX2_Gbx2_3110_PBM 
                 CAATTAG 
                 CTAATTG 
               
               
                   
               
               
                 GATA2_MA0536.1_ChIP-chip 
                 AACTATCGATA 
                 TATCGATAGTT 
               
               
                   
               
               
                 DLX2_1 
                 CTGAAGTAATTATTCC 
                 GGAATAATTACTTCAG 
               
               
                   
               
               
                 VSX2_VSX1_2_SELEX|VSX1_3 
                 GCTAATTAGCC 
                 GGCTAATTAGC 
               
               
                   
               
               
                 SIX5_Six4_SOLEXA_2_FBgn0027364_B1H 
                 ATGATACC 
                 GGTATCAT 
               
               
                   
               
               
                 SIX5_Six4_Cell_FBgn0027364_B1H 
                 ATTTGATAC 
                 GTATCAAAT 
               
               
                   
               
               
                 OVOL2_1 
                 CCCCCGC 
                 GCGGGGG 
               
               
                   
               
               
                 ELF1_known1 
                 ATAAGAGGAAAT 
                 ATTTCCTCTTAT 
               
               
                   
               
               
                 HNF1A_HNF1B_f1_HocoMoco 
                 GGTTAATGATTAAC 
                 GTTAATCATTAACC 
               
               
                   
               
               
                 RXRA_known7 
                 GTAGGGCAAAGGTCA 
                 TGACCTTTGCCCTAC 
               
               
                   
               
               
                 NFKB1_V$NFKB_C_Transfac|NFKB_known5 
                 GGGGACTTTCCA 
                 TGGAAAGTCCCC 
               
               
                   
               
               
                 NR5A1_ftz-f1_FlyReg_FBgn0001078_B1H 
                 CAGTCCGAAGGTCACCG 
                 GCGGTGACCTTCGGACT 
               
               
                   
                 C 
                 G 
               
               
                   
               
               
                 KLF4_SRP000217_Klf4_ChIP-seq 
                 GGCCCCACCCA 
                 TGGGTGGGGCC 
               
               
                   
               
               
                 SOX9_SOX10_si_HocoMoco 
                 ACAAAGA 
                 TCTTTGT 
               
               
                   
               
               
                 DMBX1_DRGX_1_SELEX|DRGX_1 
                 CTAATCTAATTAA 
                 TTAATTAGATTAG 
               
               
                   
               
               
                 DMBX1_pTH5511_PBM|DRGX_CRX_si_HocoMoco 
                 CTAATCCC 
                 GGGATTAG 
               
               
                   
               
               
                 NFYA_V$NFY_C_Transfac|NFY_known2 
                 ACTAACCAATCAGA 
                 TCTGATTGGTTAGT 
               
               
                   
               
               
                 HNF4G_Hnf4_SANGER_10_FBgn0004914_B1H 
                 TGACCCCGCCAACAA 
                 TTGTTGGCGGGGTCA 
               
               
                   
               
               
                 POU6F2_PO6F1_f1_HocoMoco 
                 CATAATTTATGCA 
                 TGCATAAATTATG 
               
               
                   
               
               
                 HOXC5_HXC6_f1_HocoMoco 
                 AAAGTAATAAATCAT 
                 ATGATTTATTACTTT 
               
               
                   
               
               
                 VSX2_pTH5821_PBM|SHOX_pTH5474_PBM|EN2_inv_SOL 
                 CTAATTAAC 
                 GTTAATTAG 
               
               
                 EXA_2_FBgn0001269_B1H|POU3F3_pTH9216_PBM 
                   
                   
               
               
                   
               
               
                 DMRTC2_pTH3205_PBM 
                 AACATGTATAAAA 
                 TTTTATACATGTT 
               
               
                   
               
               
                 MLX_MLX_1_SELEX|MLXIPL_MLXIPL_1_SELEX|MLX_MIx_1 
                 ATCACGTGAT 
                 ATCACGTGAT 
               
               
                 _SELEX|MLXIPL_1|MLX_1|MLX_2 
                   
                   
               
               
                   
               
               
                 SNAI2_wor_SOLEXA_2.5_FBgn0001983_B1H 
                 CCACCTGC 
                 GCAGGTGG 
               
               
                   
               
               
                 SOX1_SRP000712_Sox2_ChIP- 
                 CCATTGTTATGCAAA 
                 TTTGCATAACAATGG 
               
               
                 seq|BX088580.2_SRP000217_Oct4_ChIP- 
                   
                   
               
               
                 seq|SOX1_SRP000217_Sox2_ChIP-seq 
                   
                   
               
               
                   
               
               
                 TGIF1_MA0252.1_B1H|TGIF1_MA0207.1_B1H|PKNOX2_M 
                 CTGTCA 
                 TGACAG 
               
               
                 A0227.1_B1H 
                   
                   
               
               
                   
               
               
                 POU3F3_V$POU3F2_01_Transfac|POU3F2_2 
                 ATGAATTAATGCAT 
                 ATGCATTAATTCAT 
               
               
                   
               
               
                 HOXA4_MA0228.1_B1H|SHOX_Prrx2_3072_PBM|DMBX1_ 
                 CTAATTA 
                 TAATTAG 
               
               
                 Alx3_3418_PBM|PROP1_Prop1_3949_PBM|UNCX_MA019 
                   
                   
               
               
                 8.1_B1H|UNCX_Odsh_Cell_FBgn0026058_B1H|SHOX_MA 
                   
                   
               
               
                 0200.1_B1H|LHX1_Lhx4_1719_PBM|EN2_En1_3123_PBM 
                   
                   
               
               
                 |LHX9_MA0209.1_B1H|ALX1_MA0202.1_B1H|ALX1_MA0 
                   
                   
               
               
                 184.1_B1H 
                   
                   
               
               
                   
               
               
                 SOX5_3 
                 ATTTTATTGTTCTAAA 
                 TTTAGAACAATAAAAT 
               
               
                   
               
               
                 BHLHE40_BHLHB2_1_SELEX|SREBF2_Srebf1_1_SELEX|MIT 
                 ATCACGTGAC 
                 GTCACGTGAT 
               
               
                 F_TFEB_1_SELEX|MITF_TFE3_1_SELEX|USF1_USF1_1_SELE 
                   
                   
               
               
                 X|SREBF2_SREBF2_1_SELEX|MITF_TFEC_1_SELEX|BHLHE4 
                   
                   
               
               
                 0_known3|SREBP_known5|SREBP_known6|TFE3_1|TFEB 
                   
                   
               
               
                 _1|MYC_known22|TFEC_1 
                   
                   
               
               
                   
               
               
                 ZNF187_Zfp187_2626_PBM 
                 ATTAGTAC 
                 GTACTAAT 
               
               
                   
               
               
                 SIX2_MA0246.1_B1H|SIX5_MA0204.1_B1H 
                 GTATCA 
                 TGATAC 
               
               
                   
               
               
                 GLIS3_GLIS3_1_SELEX|GLIS3_1 
                 CTTCGTGGGGGGTC 
                 GACCCCCCACGAAG 
               
               
                   
               
               
                 ENSG00000250096_MA0002.2_ChIP-seq|RUNX1_9 
                 AAACCACAGAC 
                 GTCTGTGGTTT 
               
               
                   
               
               
                 SOX1_SOX2_1_SELEX|SOX2_2 
                 GAACAATACCATTGTTC 
                 GAACAATGGTATTGTTC 
               
               
                   
               
               
                 LMX1A_1 
                 CGAATTAATTAAAAACC 
                 GGTTTTTAATTAATTCG 
               
               
                   
               
               
                 RORB_V$RORA2_01_Transfac|RORA_2 
                 ATAAGTAGGTCAA 
                 TTGACCTACTTAT 
               
               
                   
               
               
                 HSF1_MA0486.1_ChIP-seq 
                 AGAACCTTCTAGAAG 
                 CTTCTAGAAGGTTCT 
               
               
                   
               
               
                 NKX6-3_V$NKX61_01_Transfac|NKX6-1_1 
                 AACCAATTAAAAA 
                 TTTTTAATTGGTT 
               
               
                   
               
               
                 ENSG00000250096_RUNX2_f1_HocoMoco 
                 ACAAACCACAG 
                 CTGTGGTTTGT 
               
               
                   
               
               
                 FOXD1_V$FREAC4_01_Transfac|FOXD1_1 
                 CCATTGTTTACTTAAG 
                 CTTAAGTAAACAATGG 
               
               
                   
               
               
                 DDIT3::CEBPA_1 
                 AGATGCAATCCCC 
                 GGGGATTGCATCT 
               
               
                   
               
               
                 LHX1_Lhx5_2279_PBM|LHX1_Lhx1_2240_PBM 
                 AATTAATTA 
                 TAATTAATT 
               
               
                   
               
               
                 TCF7L1_TCF7L1_1_SELEX|TCF7L2_Tcf7_1_SELEX|TCF7L1_2 
                 AAAGATCAAAGG 
                 CCTTTGATCTTT 
               
               
                 |TCF7_2 
                   
                   
               
               
                   
               
               
                 MEF2_known2 
                 AAGCTATAAATAGACT 
                 AGTCTATTTATAGCTT 
               
               
                   
               
               
                 PAX9_PAX5_si_HocoMoco 
                 CCTCAGCC 
                 GGCTGAGG 
               
               
                   
               
               
                 SP9_K562_SP2_HudsonAlpha_ChIP-seq 
                 GCCTAGAGCGGCCCC 
                 GGGGCCGCTCTAGGC 
               
               
                   
               
               
                 SIX2_Six2_2307_PBM 
                 GGGTATCA 
                 TGATACCC 
               
               
                   
               
               
                 ZNF589_ZN589_f1_HocoMoco 
                 CCCACGGTTACTGCCG 
                 CGGCAGTAACCGTGGG 
               
               
                   
               
               
                 ETS_disc7 
                 GGACTACAGCTCCC 
                 GGGAGCTGTAGTCC 
               
               
                   
               
               
                 LIN54_pTH8566_PBM 
                 AATTCAAAT 
                 ATTTGAATT 
               
               
                   
               
               
                 PDX1_2 
                 GAGTCTAATGACCCA 
                 TGGGTCATTAGACTC 
               
               
                   
               
               
                 ESR2_1 
                 CAAGGTCACGGTGACCT 
                 CAGGTCACCGTGACCTT 
               
               
                   
                 G 
                 G 
               
               
                   
               
               
                 SOX21_1 
                 CTTAATTATAATTAAA 
                 TTTAATTATAATTAAG 
               
               
                   
               
               
                 STAT_known11 
                 GGATTCCC 
                 GGGAATCC 
               
               
                   
               
               
                 PRKRIR_pTH9190_PBM 
                 ATCTCGTTTGGA 
                 TCCAAACGAGAT 
               
               
                   
               
               
                 TCF3_3 
                 CGGCACCTGCC 
                 GGCAGGTGCCG 
               
               
                   
               
               
                 TET1_pTH9605_PBM 
                 ATCGCGTTA 
                 TAACGCGAT 
               
               
                   
               
               
                 SPDEF_SPDEF_5_SELEX|SPDEF_6 
                 ATGATCCGGGACCAC 
                 GTGGTCCCGGATCAT 
               
               
                   
               
               
                 EBF1_MA0154.2_ChIP-seq 
                 GTCCCCAGGGA 
                 TCCCTGGGGAC 
               
               
                   
               
               
                 ARID5A_1 
                 CTAATATTGCTAAA 
                 TTTAGCAATATTAG 
               
               
                   
               
               
                 EBF1_COE1_f2_HocoMoco 
                 GTCCCCAGGGAC 
                 GTCCCTGGGGAC 
               
               
                   
               
               
                 DBX2_1 
                 GAATTAATTAATTAAA 
                 TTTAATTAATTAATTC 
               
               
                   
               
               
                 IRF2_V$1RF2_01_Transfac|IRF1_V$1RF1_01_Transfac|IRF_ 
                 GAAAAGTGAAACC 
                 GGTTTCACTTTTC 
               
               
                 known1|IRF_known2 
                   
                   
               
               
                   
               
               
                 SRF_MA0331.1_COMPILED 
                 CCCAATTAGGAA 
                 TTCCTAATTGGG 
               
               
                   
               
               
                 ELF1_ELF2_f1_HocoMoco 
                 AGTCACTTCCTGCTA 
                 TAGCAGGAAGTGACT 
               
               
                   
               
               
                 MYOD1_pTH5099_PBM 
                 AACAGCTGA 
                 TCAGCTGTT 
               
               
                   
               
               
                 ETV5_MA0076.2_ChIP-seq 
                 CCACTTCCGGC 
                 GCCGGAAGTGG 
               
               
                   
               
               
                 EGR3_EGR1_2_SELEX|EGR3_EGR1_1_SELEX|EGR1_known 
                 AATGCGTGGGCGTA 
                 TACGCCCACGCATT 
               
               
                 8|EGR1_known9 
                   
                   
               
               
                   
               
               
                 REST_disc2|BCL_disc3 
                 ACCATGGACA 
                 TGTCCATGGT 
               
               
                   
               
               
                 ALX1_RAX_1_SELEX|RAX_2 
                 GCCAATTAAC 
                 GTTAATTGGC 
               
               
                   
               
               
                 SPIC_SPIC_1_SELEX|SPIC_1 
                 AAAAAGAGGAAGTA 
                 TACTTCCTCTTTTT 
               
               
                   
               
               
                 RORB_pTH3469_PBM 
                 GGTGACCTA 
                 TAGGTCACC 
               
               
                   
               
               
                 EMX2_ems_FlyReg_FBgn0000576_B1H 
                 TGTCATAA 
                 TTATGACA 
               
               
                   
               
               
                 SP1_disc2 
                 AAAGGGGC 
                 GCCCCTTT 
               
               
                   
               
               
                 E2F7 _E2F7_f1_HocoMoco 
                 AAAGGCGCGAAAA 
                 TTTTCGCGCCTTT 
               
               
                   
               
               
                 FOXD1_MA0032.1_SELEX|FOXC1_2 
                 GGTAAGTA 
                 TACTTACC 
               
               
                   
               
               
                 TCF4_Tcfe2a_3865_PBM 
                 GCACCTGC 
                 GCAGGTGC 
               
               
                   
               
               
                 HINFP_HINFP_f1_HocoMoco 
                 GCGCTAGCGGACGTTA 
                 TAACGTCCGCTAGCGC 
               
               
                   
               
               
                 EGR3_Egr1_1_SELEX|EGR1_known12 
                 AATTGAGTGGGCGTAG 
                 CTACGCCCACTCAATT 
               
               
                   
               
               
                 POU1F1_2 
                 AATTCATAATTATACAC 
                 TGTGTATAATTATGAAT 
               
               
                   
                 A 
                 T 
               
               
                   
               
               
                 SPI1_known3 
                 TAACTTCCTCTTAA 
                 TTAAGAGGAAGTTA 
               
               
                   
               
               
                 MIXL1_MIXL1_1_SELEX|MIXL1_1 
                 GTTAATTAGA 
                 TCTAATTAAC 
               
               
                   
               
               
                 GCM1_GCM1_f1_HocoMoco 
                 AATACCCGCATGTG 
                 CACATGCGGGTATT 
               
               
                   
               
               
                 HLTF_HLTF_f1_HocoMoco 
                 TAGGGCTGCAAA 
                 TTTGCAGCCCTA 
               
               
                   
               
               
                 SMAD3_2 
                 CAAATCCAGACATCAGA 
                 TCTGATGTCTGGATTTG 
               
               
                   
               
               
                 SPIC_SPI1_si_HocoMoco 
                 AAAAAGAGGAAGTGAA 
                 TTTCACTTCCTCTTTTT 
               
               
                   
                 A 
                   
               
               
                   
               
               
                 POU6F1_2 
                 GACGATAATGAGGTTGC 
                 GCAACCTCATTATCGTC 
               
               
                   
               
               
                 NR2C2_HepG2b_TR4_UCD_ChIP-seq 
                 AACCGCTTCCGGGTC 
                 GACCCGGAAGCGGTT 
               
               
                   
               
               
                 PRDM4_PRDM4_1_SELEX|PRDM4_1 
                 GGGGGCCTTGAAA 
                 TTTCAAGGCCCCC 
               
               
                   
               
               
                 NEUROG1_NEUROD2_1_SELEX|NEUROD2_1 
                 ACCATATGGC 
                 GCCATATGGT 
               
               
                   
               
               
                 HOXC5_Hoxa5_3415_PBM|MEOX2_Meox1_2310_PBM|H 
                 GGTAATTAA 
                 TTAATTACC 
               
               
                 OXA4_Gsh2_3990_PBM|HOXC5_Hoxa7_3750_PBM|VAX1 
                   
                   
               
               
                 _Vax1_3499_PBM|HOXB2_Hoxa1_3425_PBM|HOXC5_Ho 
                   
                   
               
               
                 xa6_1040_PBM|HOXC5_Hoxa4_3426_PBM 
                   
                   
               
               
                   
               
               
                 MYC_known13 
                 AACCACGTGCTC 
                 GAGCACGTGGTT 
               
               
                   
               
               
                 POU5F1_PP5F1_do_HocoMoco 
                 ATTTGCATAACAAAGG 
                 CCTTTGTTATGCAAAT 
               
               
                   
               
               
                 MYBL1_V$CMYB_01_Transfac|MYB_1 
                 CCCAACGGCGGTTGGG 
                 CCCCCAACCGCCGTTGG 
               
               
                   
                 GG 
                 G 
               
               
                   
               
               
                 HOXC10_1 
                 ACGTTTTACGACTTTA 
                 TAAAGTCGTAAAACGT 
               
               
                   
               
               
                 HOXC10_HXD10_a_HocoMoco 
                 AATTAAAGCA 
                 TGCTTTAATT 
               
               
                   
               
               
                 SHOX_Hbn_SOLEXA_FBgn0008636_B1H|HOXC5_Pb_Cell_F 
                 GTTAATTA 
                 TAATTAAC 
               
               
                 Bgn0051481_B1H|EMX2_E5_Cell_FBgn0008646_B1H|UNC 
                   
                   
               
               
                 X_Odsh_SOLEXA_FBgn0026058_B1H|EVX2_Eve_SOLEXA_F 
                   
                   
               
               
                 Bgn0000606_B1H|ALX1_CG33980_SOLEXA_FBgn0053980_ 
                   
                   
               
               
                 B1H|LBX2_Lbl_SOLEXA_FBgn0008651_B1H|EN2_En_Cell_ 
                   
                   
               
               
                 FBgn0000577_B1H|TLX3_C15_Cell_FBgn0004863_B1H 
                   
                   
               
               
                   
               
               
                 BHLHA15_BHLHA15_1_SELEX|MSC_pTH5112_PBM|OLIG2 
                 ACCATATGGT 
                 ACCATATGGT 
               
               
                 _OLIG2_2_SELEX|NEUROG1_pTH5270_PBM|BHLHA15_1| 
                   
                   
               
               
                 OLIG2_2 
                   
                   
               
               
                   
               
               
                 SRF_MA0083.2_ChIP-seq 
                 CATGCCCAAATAAGGCA 
                 TTGCCTTATTTGGGCAT 
               
               
                   
                 A 
                 G 
               
               
                   
               
               
                 TFCP2_TFCP2_2_SELEX|TFCP2_5 
                 ACCGGTTTAAACCGGT 
                 ACCGGTTTAAACCGGT 
               
               
                   
               
               
                 IRX4_1 
                 AATATACATGTAAAACA 
                 TGTTTTACATGTATATT 
               
               
                   
               
               
                 RUNX_1 
                 AAGTCTGTGGTTAGC 
                 GCTAACCACAGACTT 
               
               
                   
               
               
                 CREB3_1 
                 CGATGACGTCATCA 
                 TGATGACGTCATCG 
               
               
                   
               
               
                 FOXO3_2 
                 AATTTGTTTACA 
                 TGTAAACAAATT 
               
               
                   
               
               
                 FOSL1_K562_FOSL1_HudsonAlpha_ChIP-seq 
                 ATGAGTCACCC 
                 GGGTGACTCAT 
               
               
                   
               
               
                 PAX2_V$PAX2_02_Transfac|PAX2_2 
                 AATAAACTC 
                 GAGTTTATT 
               
               
                   
               
               
                 IRF_disc1|E2F_disc4 
                 CAGCCAATCA 
                 TGATTGGCTG 
               
               
                   
               
               
                 PRDM1_known1 
                 AGGAAGGGAAAGGA 
                 TCCTTTCCCTTCCT 
               
               
                   
               
               
                 EGR3_MA0162.2_ChIP-seq 
                 CCCCCGCCCCCGCC 
                 GGCGGGGGCGGGGG 
               
               
                   
               
               
                 MEF2B_GM12878_MEF2A_HudsonAlpha_ChIP-seq 
                 ATGCCAAAAATAGAA 
                 TTCTATTTTTGGCAT 
               
               
                   
               
               
                 GFI1B_sens-2_SANGER_2.5_FBgn0051632_B1H 
                 ATAAATCACAGCACTC 
                 GAGTGCTGTGATTTAT 
               
               
                   
               
               
                 GFI1B_V$GFI1_01_Transfac 
                 ACAAAATAAATCACAGC 
                 GGCATATGCTGTGATTT 
               
               
                   
                 ATATGCC 
                 ATTTTGT 
               
               
                   
               
               
                 NR3C1_disc2|TFAP2_disc1 
                 GGTGAGTCAC 
                 GTGACTCACC 
               
               
                   
               
               
                 TP63_MA0525.1_ChIP-seq 
                 AGACATGCCCAGACATG 
                 GGGCATGTCTGGGCAT 
               
               
                   
                 CCC 
                 GTCT 
               
               
                   
               
               
                 GFI1B_GFI1B_f1_HocoMoco 
                 AAATCACTGCA 
                 TGCAGTGATTT 
               
               
                   
               
               
                 ITGB2_1 
                 CTGACCCC 
                 GGGGTCAG 
               
               
                   
               
               
                 ETV5_GABPA_f1_HocoMoco 
                 CCACTTCCGGTTC 
                 GAACCGGAAGTGG 
               
               
                   
               
               
                 CPHX_1 
                 ATGATCGAATCAAA 
                 TTTGATTCGATCAT 
               
               
                   
               
               
                 MBD2_MBD2_si_HocoMoco 
                 CCTCCGGCCCG 
                 CGGGCCGGAGG 
               
               
                   
               
               
                 HMGA2_pTH8863_PBM 
                 CAAATATTTG 
                 CAAATATTTG 
               
               
                   
               
               
                 SOX15_1 
                 AAATCTATTGTTCACTA 
                 TAGTGAACAATAGATTT 
               
               
                   
               
               
                 CTCF_ProgFib_CTCF_UT-A_ChIP- 
                 CGCCCCCTGGTGGCC 
                 GGCCACCAGGGGGCG 
               
               
                 seq|CTCF_GM12878_CTCF_Stanford_ChIP-seq|CTCF_SK- 
                   
                   
               
               
                 N-SH_RA_UW_ChIP-seq|CTCF_HCFaa_CTCF_UW_ChIP-seq 
                   
                   
               
               
                   
               
               
                 TBX1_TBX20_4_SELEX|TBX20_4 
                 CTTCACACCTA 
                 TAGGTGTGAAG 
               
               
                   
               
               
                 EN2_MA0027.1_SELEX|EN1_2 
                 AAGTAGTGCCC 
                 GGGCACTACTT 
               
               
                   
               
               
                 EGR1_disc1 
                 CCGCCCCCGC 
                 GCGGGGGCGG 
               
               
                   
               
               
                 GLIS2_Glis2_1757_PBM 
                 AGACCCCCCAC 
                 GTGGGGGGTCT 
               
               
                   
               
               
                 REST_known2 
                 GGCGCTCTCCGTGGTGC 
                 TTCAGCACCACGGAGAG 
               
               
                   
                 TGAA 
                 CGCC 
               
               
                   
               
               
                 HMG20B_pTH8555_PBM 
                 ATATATAATAA 
                 TTATTATATAT 
               
               
                   
               
               
                 SOX11_1 
                 ATAAGAACAAAGGACTA 
                 TAGTCCTTTGTTCTTAT 
               
               
                   
               
               
                 MAFA_V$VMAF_01_Transfac 
                 AAATGCTGACTCAGCAC 
                 TTGTGCTGAGTCAGCAT 
               
               
                   
                 AA 
                 TT 
               
               
                   
               
               
                 HAND2_HAND1_si_HocoMoco 
                 AATGCCAGACCC 
                 GGGTCTGGCATT 
               
               
                   
               
               
                 RREB1_RREB1_si_HocoMoco 
                 ACCCCAAACCACCCCCC 
                 GGGGGGGGGGGTGGTT 
               
               
                   
                 CCCCC 
                 TGGGGT 
               
               
                   
               
               
                 PAX4_V$PAX4_02_Transfac|PAX4_2 
                 GAATAATTACC 
                 GGTAATTATTC 
               
               
                   
               
               
                 SCRT2_CG12605_SOLEXA_5_FBgn0035481_B1H|SCRT2_sc 
                 CCACCTGTTGCAC 
                 GTGCAACAGGTGG 
               
               
                 rt_SOLEXA_2.5_1_FBgn0004880_B1H 
                   
                   
               
               
                   
               
               
                 HOXB13_pTH5808_PBM 
                 GCCCATAAAA 
                 TTTTATGGGC 
               
               
                   
               
               
                 SRY_SRY_2_SELEX|SRY_6 
                 AACAATATTCATTGTT 
                 AACAATGAATATTGTT 
               
               
                   
               
               
                 RORA_3 
                 TAAATAGGTCA 
                 TGACCTATTTA 
               
               
                   
               
               
                 MAFK_MAFF_1_SELEX|MAFF_1 
                 TTGCTGACTCAGCAA 
                 TTGCTGAGTCAGCAA 
               
               
                   
               
               
                 RARG_RARG_do_HocoMoco 
                 GGGGGTCACCCAGAGG 
                 GTGACCTCTGGGTGACC 
               
               
                   
                 TCAC 
                 CCC 
               
               
                   
               
               
                 SPDEF_Ets98B_SANGER_10_FBgn0005659_B1H 
                 ACCCGGATC 
                 GATCCGGGT 
               
               
                   
               
               
                 E2F_disc7 
                 CCGCGCCGCC 
                 GGCGGCGCGG 
               
               
                   
               
               
                 NR3C1_known8 
                 GTTGCGGGTACAGAGT 
                 TTCCCTAGAACACTCTGT 
               
               
                   
                 GTTCTAGGGAA 
                 ACCCGCAAC 
               
               
                   
               
               
                 TCF12_disc3 
                 AGGTGCGG 
                 CCGCACCT 
               
               
                   
               
               
                 GATA_disc1 
                 CCTTATCTGC 
                 GCAGATAAGG 
               
               
                   
               
               
                 THRB_THA_f1_HocoMoco 
                 CTGACCTGAA 
                 TTCAGGTCAG 
               
               
                   
               
               
                 GSC_1 
                 AATCGTTAATCCCTTTA 
                 TAAAGGGATTAACGATT 
               
               
                   
               
               
                 PAX5_disc5 
                 GCGCGCGCGC 
                 GCGCGCGCGC 
               
               
                   
               
               
                 NKX2-5_MA0211.1_B1H 
                 CACTTAA 
                 TTAAGTG 
               
               
                   
               
               
                 NR4A2_NR4A2_2_SELEX|NR4A_known3 
                 TGACCTTTAAAGGTCA 
                 TGACCTTTAAAGGTCA 
               
               
                   
               
               
                 FOXD1_V$XFD1_01_Transfac 
                 CATGTAAATAATGC 
                 GCATTATTTACATG 
               
               
                   
               
               
                 FOXD1_FOXC2_3_SELEX|FOXC2_3 
                 TAAGTAAACAAA 
                 TTTGTTTACTTA 
               
               
                   
               
               
                 IRX3_1 
                 AAAATACATGTAATACT 
                 AGTATTACATGTATTTT 
               
               
                   
               
               
                 NOBOX_NOBOX_si_HocoMoco|BARHL2_Barhl2_3868_PB 
                 ACCAATTAG 
                 CTAATTGGT 
               
               
                 M|BARHL2_Barhl1_2590_PBM 
                   
                   
               
               
                   
               
               
                 SOX17_Sox17_1_SELEX|SOX17_4 
                 AACAATGCAATTGTT 
                 AACAATTGCATTGTT 
               
               
                   
               
               
                 PKNOX2_Pknox1_2364_PBM 
                 ACCTGTCA 
                 TGACAGGT 
               
               
                   
               
               
                 E2F4_E2F4_2_SELEX|E2F1_E2F1_2_SELEX|E2F_known28| 
                 TTTGGCGCCAAA 
                 TTTGGCGCCAAA 
               
               
                 E2F_known30 
                   
                   
               
               
                   
               
               
                 SNAI3_SNAI1_f1_HocoMoco 
                 CCACCTGG 
                 CCAGGTGG 
               
               
                   
               
               
                 SREBF2_MA0595.1_ChIP-seq 
                 ATCACCCCAC 
                 GTGGGGTGAT 
               
               
                   
               
               
                 NR2E1_NR2E1_2_SELEX|NR2E1_Nr2e1_2_SELEX|NR2E1_2 
                 AAGTCAATAAGTCA 
                 TGACTTATTGACTT 
               
               
                 |NR2E1_4 
                   
                   
               
               
                   
               
               
                 CDX2_CDX2_f1_HocoMoco 
                 ATTTATGG 
                 CCATAAAT 
               
               
                   
               
               
                 ALX1_MA0180.1_B1H|ALX1_CG33980_SOLEXA_2_10_FBg 
                 CTAATTAAA 
                 TTTAATTAG 
               
               
                 n0053980_B1H|ALX1_CG33980_Cell_FBgn0053980_B1H 
                   
                   
               
               
                   
               
               
                 BCL11B_GM12878_BCL11A_HudsonAlpha_ChIP-seq 
                 AAGAGGAAGTGAAAC 
                 GTTTCACTTCCTCTT 
               
               
                   
               
               
                 TGIF2_1 
                 AACTAGCTGTCAATAC 
                 GTATTGACAGCTAGTT 
               
               
                   
               
               
                 SREBF2_MA0596.1_ChIP-seq 
                 ATCACCCCAT 
                 ATGGGGTGAT 
               
               
                   
               
               
                 ARID3C_pTH4425_PBM 
                 ATATTAATTAA 
                 TTAATTAATAT 
               
               
                   
               
               
                 EGR1_disc7 
                 CACGCACGCA 
                 TGCGTGCGTG 
               
               
                   
               
               
                 EN2_inv_SOLEXA_5_FBgn0001269_B1H 
                 CTAATTAAG 
                 CTTAATTAG 
               
               
                   
               
               
                 IRX3_Irx4_2242_PBM 
                 AATTACAA 
                 TTGTAATT 
               
               
                   
               
               
                 NKX2- 
                 CAATTAAG 
                 CTTAATTG 
               
               
                 5_V$NKX25_02_Transfac|ISL2_Tup_Cell_FBgn0003896_B1 
                   
                   
               
               
                 H|NKX2-5_2 
                   
                   
               
               
                   
               
               
                 MAX_H1-hESC_MAX_UCD_ChIP-seq 
                 AGAGCACGTGG 
                 CCACGTGCTCT 
               
               
                   
               
               
                 ARID3C_pTH5118_PBM 
                 CAATTAAA 
                 TTTAATTG 
               
               
                   
               
               
                 CRX_1 
                 GTGGGATTAGTGA 
                 TCACTAATCCCAC 
               
               
                   
               
               
                 GSC_GSC_1_SELEX|GSC_2 
                 GCTAATCCCC 
                 GGGGATTAGC 
               
               
                   
               
               
                 COMP1_1 
                 GGCCTTTTGTTGTCAATC 
                 TGTTTTGATTGACAACA 
               
               
                   
                 AAAACA 
                 AAAGGCC 
               
               
                   
               
               
                 ETS1_ETS1_si_HocoMoco 
                 ACAGGAAGT 
                 ACTTCCTGT 
               
               
                   
               
               
                 RFX5_known4 
                 CTGTTGCCA 
                 TGGCAACAG 
               
               
                   
               
               
                 DLX1_pTH5506_PBM 
                 AGTAATTAGC 
                 GCTAATTACT 
               
               
                   
               
               
                 KIAA0415_YNL068C_830_DeBoer11 
                 TCATCTTTGTTTACTTTT 
                 TTAAAAGTAAACAAAGA 
               
               
                   
                 AA 
                 TGA 
               
               
                   
               
               
                 ZBTB33_KAISO_f1_HocoMoco 
                 CTCGCAGGAAGA 
                 TCTTCCTGCGAG 
               
               
                   
               
               
                 T_TBX19_1_SELEX|TBX19_1 
                 TTTCACACCTAGGTGTG 
                 TTTCACACCTAGGTGTG 
               
               
                   
                 AAA 
                 AAA 
               
               
                   
               
               
                 NEUROG1_NDF1_f1_HocoMoco 
                 CGGCAGATGGCC 
                 GGCCATCTGCCG 
               
               
                   
               
               
                 SP9_pTH5576_PBM 
                 ACCGCTTC 
                 GAAGCGGT 
               
               
                   
               
               
                 MYOD1_MA0500.1_ChIP-seq 
                 CTGCAGCTGTC 
                 GACAGCTGCAG 
               
               
                   
               
               
                 RORB_V$RORA1_01_Transfac|RORA_1 
                 ATATCAAGGTCAT 
                 ATGACCTTGATAT 
               
               
                   
               
               
                 RAD21_disc7 
                 GCCAGCAGCTGGCGC 
                 GCGCCAGCTGCTGGC 
               
               
                   
               
               
                 POU3F3_V$BRN2_01_Transfac 
                 GCTCATTACGAATGAC 
                 GTCATTCGTAATGAGC 
               
               
                   
               
               
                 HNF4_known4 
                 ATGAACTTTGACC 
                 GGTCAAAGTTCAT 
               
               
                   
               
               
                 PRDM1_Mv110_ChIP-seq 
                 ACTTTCAC 
                 GTGAAAGT 
               
               
                   
               
               
                 CTCF_CTCF_1_SELEX|CTCF_known2 
                 AGCGCCACCTAGTGGTA 
                 TACCACTAGGTGGCGCT 
               
               
                   
               
               
                 BPTF_V$FAC1_01_Transfac 
                 ACCCACAACACATA 
                 TATGTGTTGTGGGT 
               
               
                   
               
               
                 NFE2_NFE2_1_SELEX|NFE2_known2 
                 CATGACTCATC 
                 GATGAGTCATG 
               
               
                   
               
               
                 HNF4_known3 
                 GGGGGCAAAGGTCAC 
                 GTGACCTTTGCCCCC 
               
               
                   
               
               
                 HIF1A_2 
                 GCGTACGTGCGGCA 
                 TGCCGCACGTACGC 
               
               
                   
               
               
                 BDP1_disc1 
                 CCCGGAGGGCTTCCTGG 
                 CCTCCTCCAGGAAGCCC 
               
               
                   
                 AGGAGG 
                 TCCGGG 
               
               
                   
               
               
                 PAX6_MA0069.1_SELEX|PAX6_3 
                 AACTCATGCGTGAA 
                 TTCACGCATGAGTT 
               
               
                   
               
               
                 FOXJ3_1 
                 AAAAAGTAAACAAACCC 
                 GGGTTTGTTTACTTTTT 
               
               
                   
               
               
                 AP1_disc1 
                 ATGACGTCAC 
                 GTGACGTCAT 
               
               
                   
               
               
                 NPAS3_HIF1A_si_HocoMoco 
                 CCGCACGTACGC 
                 GCGTACGTGCGG 
               
               
                   
               
               
                 CTCF_N H-A_CTCF_Broad_ChIP-seq 
                 TAGTGCCCCCTAGTGGC 
                 TTTGGCCACTAGGGGGC 
               
               
                   
                 CAAA 
                 ACTA 
               
               
                   
               
               
                 ATF3_known12 
                 GCGCTGACGTAACC 
                 GGTTACGTCAGCGC 
               
               
                   
               
               
                 MEF2B_V$MEF2_04_Transfac|MEF2_known5 
                 ACTGTTACTAAAAATAG 
                 AGTTTCTATTTTTAGTAA 
               
               
                   
                 AAACT 
                 CAGT 
               
               
                   
               
               
                 SOX7_SOX7_2_SELEX|SOX7_3 
                 AAACAATGCAATTGTTT 
                 AAACAATTGCATTGTTT 
               
               
                   
               
               
                 NFIA_NFIA_2_SELEX 
                 ACTTGGCACC 
                 GGTGCCAAGT 
               
               
                   
               
               
                 TATA_disc2 
                 ATGACGTCAT 
                 ATGACGTCAT 
               
               
                   
               
               
                 OVOL1_ovo_SANGER_5_FBgn0003028_B1H 
                 AGTACCGTTAT 
                 ATAACGGTACT 
               
               
                   
               
               
                 ZIC5_Opa_SANGER_5_FBgn0003002_B1H 
                 ATCCCCCCCACCG 
                 CGGTGGGGGGGAT 
               
               
                   
               
               
                 ENSG00000250096_RUNX2_3_SELEX|RUNX2_6 
                 AAACCGCAA 
                 TTGCGGTTT 
               
               
                   
               
               
                 CUX1_7 
                 TAATGATGATCACTA 
                 TAGTGATCATCATTA 
               
               
                   
               
               
                 YY1_disc5 
                 CTCCCCTGCCGC 
                 GCGGCAGGGGAG 
               
               
                   
               
               
                 BATF3_BATF3_1_SELEX|BATF_known1 
                 TGATGACGTCATCA 
                 TGATGACGTCATCA 
               
               
                   
               
               
                 EBF1_disc2 
                 CAGCTCCCCAGGG 
                 CCCTGGGGAGCTG 
               
               
                   
               
               
                 ZNF75C_ZNF75A_1_SELEX|ZNF75A_1 
                 GCTTTTCCCACA 
                 TGTGGGAAAAGC 
               
               
                   
               
               
                 CHD2_disc3 
                 CTCCTCGCCCC 
                 GGGGCGAGGAG 
               
               
                   
               
               
                 OSR2_sob_SANGER_10_FBgn0004892_B1H 
                 GAAACACAGTAGC 
                 GCTACTGTGTTTC 
               
               
                   
               
               
                 NFAT5_pTH9263_PBM|NFATC1_pTH8401_PBM|NFATC1_ 
                 AATGGAAAAT 
                 ATTTTCCATT 
               
               
                 pTH8315_PBM|NFATC1_pTH9196_PBM|NFATC1_pTH855 
                   
                   
               
               
                 7_PBM|NFATC1_pTH9005_PBM|NFATC1_pTH9192_PBM 
                   
                   
               
               
                   
               
               
                 SIX5_known 7 
                 AATAGGGTATCAATATT 
                 AATATTGATACCCTATT 
               
               
                   
               
               
                 NKX3-1_4 
                 CATTTAAGTACTTAGTA 
                 TACTAAGTACTTAAATG 
               
               
                   
               
               
                 MSC_MSC_1_SELEX|ASCL2_Ascl2_2654_PBM|MYOD1_MY 
                 AACAGCTGTT 
                 AACAGCTGTT 
               
               
                 F6_1_SELEX|MYF6_2|MSC_1 
                   
                   
               
               
                   
               
               
                 FOXP3_FOXP3_f1_HocoMoco 
                 AAACAAATT 
                 AATTTGTTT 
               
               
                   
               
               
                 STAT_known17 
                 CATTTCCCGGAAACC 
                 GGTTTCCGGGAAATG 
               
               
                   
               
               
                 AR_ANDR_do_HocoMoco 
                 AAGAACATCCTGTTCC 
                 GGAACAGGATGTTCTT 
               
               
                   
               
               
                 E2F2_E2F2_1_SELEX|E2F3_E2F3_1_SELEX|E2F2_2|E2F_kn 
                 AAAAATGGCGCCAAAAT 
                 CATTTTGGCGCCATTTTT 
               
               
                 own24 
                 G 
                   
               
               
                   
               
               
                 USF1_V$USF_02_Transfac|MYC_known4 
                 AAATCACGTGATAT 
                 ATATCACGTGATTT 
               
               
                   
               
               
                 PITX1_1 
                 ATTGTTAATCCCTCTAA 
                 TTAGAGGGATTAACAAT 
               
               
                   
               
               
                 KLF4_pTH3086_PBM|KLF4_Klf7_0974_PBM|KLF4_pTH097 
                 GCCACGCCCA 
                 TGGGCGTGGC 
               
               
                 7_PBM 
                   
                   
               
               
                   
               
               
                 RHOXF1_7 
                 CGCTGTTAA 
                 TTAACAGCG 
               
               
                   
               
               
                 LMX1A_MA0182.1_B1H 
                 CAATAAA 
                 TTTATTG 
               
               
                   
               
               
                 PTF1A_PTF1A_f1_HocoMoco 
                 CAGGAAACTGAACAGCT 
                 GGACAGCTGTTCAGTTT 
               
               
                   
                 GTCC 
                 CCTG 
               
               
                   
               
               
                 FOXD1_V$XFD2_01_Transfac 
                 AATATAAACATACA 
                 TGTATGTTTATATT 
               
               
                   
               
               
                 NANOG_known1 
                 GGAAATGGGCCC 
                 GGGCCCATTTCC 
               
               
                   
               
               
                 SOX9_SOX9_5_SELEX|SOX9_7 
                 AAACAATTGCAGTGTTT 
                 AAACACTGCAATTGTTT 
               
               
                   
               
               
                 CUX1_6 
                 ACCGGTTGATCACCTGA 
                 TCAGGTGATCAACCGGT 
               
               
                   
               
               
                 YY1_known4 
                 CAAGATGGC 
                 GCCATCTTG 
               
               
                   
               
               
                 ATF1_pTH5002_PBM 
                 TATGACGTAA 
                 TTACGTCATA 
               
               
                   
               
               
                 UBP1_MA0145.2_ChIP-seq|TFCP2L1_1 
                 CCAGTTCAAACCAG 
                 CTGGTTTGAACTGG 
               
               
                   
               
               
                 MEF2_known10 
                 GGCTATTTTTAA 
                 TTAAAAATAGCC 
               
               
                   
               
               
                 IKZF1_V$IK2_01_Transfac|IKZF2_1 
                 GTATTCCCAAAC 
                 GTTTGGGAATAC 
               
               
                   
               
               
                 NANOG_disc2 
                 GCCTTTGTTTTGCAA 
                 TTGCAAAACAAAGGC 
               
               
                   
               
               
                 BACH1_V$BACH1_01_Transfac|BACH1_1 
                 ACGATGAGTCATGCT 
                 AGCATGACTCATCGT 
               
               
                   
               
               
                 GATA2_V$GATA2_01_Transfac|GATA_known2 
                 CGCTATCCGC 
                 GCGGATAGCG 
               
               
                   
               
               
                 MZF1_V$MZF1_02_Transfac|MZF1_2 
                 GGGTGAGGGGGAA 
                 TTCCCCCTCACCC 
               
               
                   
               
               
                 OSR2_Osr1_3033_PBM|OSR2_pTH9150_PBM 
                 ACGGTAGCA 
                 TGCTACCGT 
               
               
                   
               
               
                 RFX8_pTH9285_PBM 
                 CATAGCAAC 
                 GTTGCTATG 
               
               
                   
               
               
                 ENSG00000250096_RUNX3_si_HocoMoco 
                 AACCACAAACCCCA 
                 TGGGGTTTGTGGTT 
               
               
                   
               
               
                 RORB_pTH3464_PBM 
                 CTAGGTCA 
                 TGACCTAG 
               
               
                   
               
               
                 POU2F2_known4 
                 ATATAATTATGCAAATT 
                 TCTTTTAATTTGCATAAT 
               
               
                   
                 AAAAGA 
                 TATAT 
               
               
                   
               
               
                 ATF5_ATF5_si_HocoMoco 
                 CCTTCTTCCTTA 
                 TAAGGAAGAAGG 
               
               
                   
               
               
                 ETV5_ELK3_f1_HocoMoco 
                 CCCAGGAAGTGC 
                 GCACTTCCTGGG 
               
               
                   
               
               
                 MYC_known18|MYCN_2 
                 CGCACGTGGC 
                 GCCACGTGCG 
               
               
                   
               
               
                 ZIC4_Zic3_1_SELEX|ZIC4_ZIC4_1_SELEX|ZIC4_1|ZIC3_4 
                 GACCCCCCGCTGTGC 
                 GCACAGCGGGGGGTC 
               
               
                   
               
               
                 CTCF_HMEC_CTCF_Broad_ChIP-seq 
                 ATAGCGCCCCCTGGTGG 
                 TGGCCACCAGGGGGCG 
               
               
                   
                 CCA 
                 CTAT 
               
               
                   
               
               
                 USF1_K562_USF1_HudsonAlpha_ChIP-seq 
                 CGGCCACGTGACCC 
                 GGGTCACGTGGCCG 
               
               
                   
               
               
                 PITX3_1 
                 AGGGGGATTAGCTGCC 
                 GGCAGCTAATCCCCCT 
               
               
                   
               
               
                 LBX1_pTH5994_PBM|SHOX_UNCX_2_SELEX|LBX1_pTH567 
                 CTAATTAA 
                 TTAATTAG 
               
               
                 2_PBM|ALX1_pTH6195_PBM|DMBX1_Cart1_0997_PBM| 
                   
                   
               
               
                 HOXC5_pTH6140_PBM|DRGX_Pax6_3838_PBM|DMBX1_ 
                   
                   
               
               
                 Arx_1738_PBM|LMX1A_LMX16_2_SELEX|VENTX_pTH549 
                   
                   
               
               
                 0_PBM|POU3F3_pTH9342_PBM|LBX2_Lbx2_3869_PBM|E 
                   
                   
               
               
                 VX2_pTH6104_PBM|ALX1_PRRX1_1_SELEX|SHOX_Prrx2_1 
                   
                   
               
               
                 _SELEX|LHX9_Lhx2_0953_PBM|HESX1_pTH6156_PBM|HO 
                   
                   
               
               
                 XD1_pTH6251_PBM|LHX9_Lhx9_3492_PBM|LBX2_pTH64 
                   
                   
               
               
                 04_PBM|SHOX_SHOX_1_SELEX|SHOX_Shox2_1_SELEX|SH 
                   
                   
               
               
                 OX_Uncx_2_SELEX|ALX1_ISX_3_SELEX|ISX_4|LMX16_3|N 
                   
                   
               
               
                 KX6-2_2|NKX6- 
                   
                   
               
               
                 2_3|PRRX1_2|PRRX2_5|SHOX_1|SHOX2_3|UNCX_3|UNC 
                   
                   
               
               
                 X_5 
                   
                   
               
               
                   
               
               
                 HOXC5_PDX1_2_SELEX|VAX1_VAX1_1_SELEX|HOXC5_pTH 
                 CTAATTAC 
                 GTAATTAG 
               
               
                 6215_PBM|VAX1_VAX2_1_SELEX|PDX1_6|VAX1_2|VAX2_ 
                   
                   
               
               
                 2 
                   
                   
               
               
                   
               
               
                 PAX4_PAX4_2_SELEX|ALX1_VSX2_1_SELEX|PAX4_PAX4_1 
                 CTAATTAG 
                 CTAATTAG 
               
               
                 _SELEX|EN2_EN1_3_SELEX|LHX8_Lhx8_2_SELEX|PAX4_7| 
                   
                   
               
               
                 PAX4_8|EN1_6|LHX8_3|VSX2_2 
                   
                   
               
               
                   
               
               
                 RHOXF2_1 
                 GAGCATTAATTAAGGCA 
                 TGCCTTAATTAATGCTC 
               
               
                   
               
               
                 MYC_known11 
                 GACCACGTGACA 
                 TGTCACGTGGTC 
               
               
                   
               
               
                 ZIC4_Zic3_3119_PBM|ZIC4_Zic2_2895_PBM|ZIC4_Zic1_09 
                 CACAGCGGGG 
                 CCCCGCTGTG 
               
               
                 91_PBM 
                   
                   
               
               
                   
               
               
                 ETV5_K562_ETS1_HudsonAlpha_ChIP-seq 
                 CCTGCTGGGAGTTGTAG 
                 GGGACTACAACTCCCAG 
               
               
                   
                 TCCC 
                 CAGG 
               
               
                   
               
               
                 FOXD1_Foxk1_1_SELEX|FOXK1_3 
                 CGGACACAATC 
                 GATTGTGTCCG 
               
               
                   
               
               
                 AL662830.5_exd_SOLEXA_2_FBgn0000611_B1H 
                 ATATCAAA 
                 TTTGATAT 
               
               
                   
               
               
                 CREB3L2_pTH5024_PBM 
                 ACACGTGGC 
                 GCCACGTGT 
               
               
                   
               
               
                 GATA2_Mf28_ChIP-seq 
                 ACCCCCTTATCAGACTAT 
                 ATAGTCTGATAAGGGG 
               
               
                   
                   
                 GT 
               
               
                   
               
               
                 TEF_DBP_si_HocoMoco 
                 GTTATGTAACA 
                 TGTTACATAAC 
               
               
                   
               
               
                 ENSG00000234254_Tgif2_3451_PBM|PKNOX2_Pknox2_30 
                 ACCTGTCAAT 
                 ATTGACAGGT 
               
               
                 77_PBM 
                   
                   
               
               
                   
               
               
                 AL662834.13_Zbtb12_2932_PBM 
                 ATCTAGAACA 
                 TGTTCTAGAT 
               
               
                   
               
               
                 SRY_4 
                 GAATATTATAATTATA 
                 TATAATTATAATATTC 
               
               
                   
               
               
                 DMBX1_Alx1_1_SELEX|DMBX1_ALX3_2_SELEX|ALX3_3|AL 
                 TCTAATTAAA 
                 TTTAATTAGA 
               
               
                 X1_4 
                   
                   
               
               
                   
               
               
                 DLX1_Dlx2_1_SELEX|DLX2_3 
                 GCAATTAA 
                 TTAATTGC 
               
               
                   
               
               
                 YY2_pho_SANGER_10_FBgn0002521_B1H 
                 CAAAATGGCGGC 
                 GCCGCCATTTTG 
               
               
                   
               
               
                 TFAP2A_Tcfap2a_2337_PBM 
                 CCCTGAGGCA 
                 TGCCTCAGGG 
               
               
                   
               
               
                 CR936877.3_RXRB_f1_HocoMoco 
                 TGAGGTCACA 
                 TGTGACCTCA 
               
               
                   
               
               
                 RBPJ_MA0085.1_COMPILED 
                 ATCTCGTTTCCCACAG 
                 CTGTGGGAAACGAGAT 
               
               
                   
               
               
                 ETV5_HepG2_GABP_HudsonAlpha_ChIP-seq 
                 CCACTTCCGGTTCCG 
                 CGGAACCGGAAGTGG 
               
               
                   
               
               
                 NKX2-5_Bap_Cell_FBgn0004862_B1H 
                 CCACTTAAGA 
                 TCTTAAGTGG 
               
               
                   
               
               
                 CUX1_CUX1_1_SELEX|CUX1_8 
                 ATCGATAACTGATCGAT 
                 ATCGATCAGTTATCGAT 
               
               
                   
               
               
                 DMBX1_ALX4_1_SELEX|DMBX1_Alx1_2_SELEX|DMBX1_Ar 
                 CTAATTAAATTAA 
                 TTAATTTAATTAG 
               
               
                 x_1_SELEX|SHOX_Uncx_1_SELEX|ALX4_3|ALX1_5|ARX_3| 
                   
                   
               
               
                 UNCX_4 
                   
                   
               
               
                   
               
               
                 RELA_GM12892_N FKB_Stanford_ChIP- 
                 AGGGGATTTCCAAGG 
                 CCTTGGAAATCCCCT 
               
               
                 seq|RELA_GM19193_NFKB_Stanford_ChIP-seq 
                   
                   
               
               
                   
               
               
                 HNF4_known1 
                 ACAGGGTCAAAGGTCA 
                 TCTTGACCTTTGACCCTG 
               
               
                   
                 AGA 
                 T 
               
               
                   
               
               
                 SHOX_UNCX_1_SELEX|UNCX_2 
                 CTAATTAAATTAG 
                 CTAATTTAATTAG 
               
               
                   
               
               
                 NKX2-6_Tin_SOLEXA_FBgn0004110_B1H|NKX2- 
                 CACTTAAG 
                 CTTAAGTG 
               
               
                 5_Bap_SOLEXA_FBgn0004862_B1H 
                   
                   
               
               
                   
               
               
                 CDX2_cad_FlyReg_FBgn0000251_B1H 
                 ATCATAAAA 
                 TTTTATGAT 
               
               
                   
               
               
                 BCL_disc10 
                 CCTCCGCCGC 
                 GCGGCGGAGG 
               
               
                   
               
               
                 SIX5_known 1 
                 AATAGGGTATCATATAT 
                 ATATATGATACCCTATT 
               
               
                   
               
               
                 HOXC5_1 
                 AGTAATTAATTAATTCG 
                 CGAATTAATTAATTACT 
               
               
                   
               
               
                 ZNF423_ZN423_a_HocoMoco 
                 GCACCCTTGGGTGCC 
                 GGCACCCAAGGGTGC 
               
               
                   
               
               
                 REST_disc3 
                 GGACAGCGCC 
                 GGCGCTGTCC 
               
               
                   
               
               
                 IRF7_IRF7_2_SELEX|IRF_known18 
                 AAAACGAAAATCGATTT 
                 AAATCGATTTTCGTTTT 
               
               
                   
               
               
                 THRB_V$T3R_01_Transfac 
                 GATTGAGGTCACGCCA 
                 TGGCGTGACCTCAATC 
               
               
                   
               
               
                 POU3F3_pTH3819_PBM|ALX1_Vsx1_1728_PBM 
                 CTAATTATC 
                 GATAATTAG 
               
               
                   
               
               
                 SREBP_known2 
                 GATCACCCCAC 
                 GTGGGGTGATC 
               
               
                   
               
               
                 MLX_pTH2882_PBM 
                 CACGTGATC 
                 GATCACGTG 
               
               
                   
               
               
                 ZNF32_pTH3120_PBM 
                 ATATATATA 
                 TATATATAT 
               
               
                   
               
               
                 PAX9_sv_SOLEXA_5_FBgn0005561_B1H 
                 ATTGGTGCGTGACGG 
                 CCGTCACGCACCAAT 
               
               
                   
               
               
                 RELA_MA0101.1_SELEX|RELA_V$CREL_01_Transfac|REL1 
                 GGAAATCCCC 
                 GGGGATTTCC 
               
               
                 |REL2 
                   
                   
               
               
                   
               
               
                 CTCF_A549_CTCF_HudsonAlpha_ChIP-seq 
                 ACAGCGCCCCCTGGTGG 
                 GTGGCCACCAGGGGGC 
               
               
                   
                 CCAC 
                 GCTGT 
               
               
                   
               
               
                 CR936877.3_MA0512.1_ChIP-seq 
                 CAAAGGTCAGA 
                 TCTGACCTTTG 
               
               
                   
               
               
                 THAP1_disc1 
                 CCGCCATCTTGGTTAAG 
                 CCTCTGCCCTTAACCAA 
               
               
                   
                 GGCAGAGG 
                 GATGGCGG 
               
               
                   
               
               
                 IRF7_IRF7_1_SELEX|IRF_known17 
                 ACGAAAGCGAAAGT 
                 ACTTTCGCTTTCGT 
               
               
                   
               
               
                 SP9_Sp4_1011_PBM 
                 AGGGGGCGGG 
                 CCCGCCCCCT 
               
               
                   
               
               
                 BX088580.2_H1-hESC_POU5F1_HudsonAlpha_ChIP-seq 
                 ATTTGCATAACAAAGGA 
                 TCCTTTGTTATGCAAAT 
               
               
                   
               
               
                 HOXC10_HOXC10_1_SELEX|HOXC10_2 
                 CCCATAAAAA 
                 TTTTTATGGG 
               
               
                   
               
               
                 HBP1_Hbp1_2241_PBM 
                 GTGAATGA 
                 TCATTCAC 
               
               
                   
               
               
                 ATF1_pTH5005_PBM 
                 ATGACGTA 
                 TACGTCAT 
               
               
                   
               
               
                 RFX8_pTH10021_PBM 
                 CATAGCAACC 
                 GGTTGCTATG 
               
               
                   
               
               
                 PAX4_V$PAX4_04_Transfac|PAX4_4 
                 AAAAATTAACCCAAAAT 
                 GGGGTGAGGTTGGATT 
               
               
                   
                 CCAACCTCACCCC 
                 TTGGGTTAATTTTT 
               
               
                   
               
               
                 RFX8_Rfxdc2_3516_PBM 
                 CATAGCAACG 
                 CGTTGCTATG 
               
               
                   
               
               
                 GLIS3_GLIS3_f1_HocoMoco 
                 GTGGGGGGTA 
                 TACCCCCCAC 
               
               
                   
               
               
                 PAX5_disc4 
                 AGAGGAAGTG 
                 CACTTCCTCT 
               
               
                   
               
               
                 TEAD1_TEAD1_2_SELEX|TEAD1_4 
                 ACATTCCTGACATTCCA 
                 TGGAATGTCAGGAATGT 
               
               
                   
               
               
                 E2F_known17 
                 GTTTGGCGCGA 
                 TCGCGCCAAAC 
               
               
                   
               
               
                 ZNF274_NT2-D1_ZNF274_UCD_ChIP-seq 
                 TCATACTGGAGAGAA 
                 TTCTCTCCAGTATGA 
               
               
                   
               
               
                 TFAP2A_Tcfap2a_2_SELEX|TFAP2A_TFAP2A_2_SELEX|TFA 
                 CGCCTCAGGCA 
                 TGCCTGAGGCG 
               
               
                 P2_known12|TFAP2_known21 
                   
                   
               
               
                   
               
               
                 OVOL1_OVOL1_f1_HocoMoco 
                 ACAGTTACA 
                 TGTAACTGT 
               
               
                   
               
               
                 ESRRG_Esrra_2190_PBM 
                 ATGACCTTG 
                 CAAGGTCAT 
               
               
                   
               
               
                 PAX4_3 
                 AATCCCCACCCC 
                 GGGGTGGGGATT 
               
               
                   
               
               
                 IRF1_IRF1_si_HocoMoco 
                 ACTTTCACTTTC 
                 GAAAGTGAAAGT 
               
               
                   
               
               
                 POU2F2_known1 
                 ATCAATATGCAAATTTC 
                 CCGAAATTTGCATATTG 
               
               
                   
                 GG 
                 AT 
               
               
                   
               
               
                 PAX4_V$PAX4_03_Transfac 
                 AATCCCCACCCG 
                 CGGGTGGGGATT 
               
               
                   
               
               
                 POU3F3_V$OCT1_02_Transfac|POU2F2_known2 
                 ATGAATATGCATATA 
                 TATATGCATATTCAT 
               
               
                   
               
               
                 ARHGEF12_1 
                 ATTTACGACAAATAGC 
                 GCTATTTGTCGTAAAT 
               
               
                   
               
               
                 EOMES_TBX21_3_SELEX|TBX21_3 
                 TCACACCTTAAAGGTGT 
                 TCACACCTTTAAGGTGT 
               
               
                   
                 GA 
                 GA 
               
               
                   
               
               
                 MAX_MAX_1_SELEX|MYC_known20 
                 CACGTGCTAACCACGTG 
                 CACGTGGTTAGCACGTG 
               
               
                   
               
               
                 HSFY1_HSFY2_3_SELEX|HSFY2_3 
                 TTCGAACCGTTCGAA 
                 TTCGAACGGTTCGAA 
               
               
                   
               
               
                 CEBPA_HeLa-S3_CEBPB_Stanford_ChIP-seq 
                 AGGATTGTGCAATA 
                 TATTGCACAATCCT 
               
               
                   
               
               
                 RFX8_pTH8587_PBM 
                 ATAGCAAC 
                 GTTGCTAT 
               
               
                   
               
               
                 CEBPA_pTH3208_PBM 
                 ATTACGCAAT 
                 ATTGCGTAAT 
               
               
                   
               
               
                 FOXM1_pTH8652_PBM 
                 AAAAACAA 
                 TTGTTTTT 
               
               
                   
               
               
                 PDX1_1 
                 GAATTAATGACC 
                 GGTCATTAATTC 
               
               
                   
               
               
                 E2F1_MA0024.2_ChIP-seq 
                 CCTCCCGCCCG 
                 CGGGCGGGAGG 
               
               
                   
               
               
                 ALX1_ISX_1_SELEX|ISX_2 
                 TTAATCTAATTAA 
                 TTAATTAGATTAA 
               
               
                   
               
               
                 TWIST2_pTH5033_PBM|OLIG2_OLIG3_1_SELEX|OLIG2_pT 
                 AACATATGGT 
                 ACCATATGTT 
               
               
                 H5267_PBM|OLIG2_BHLHE23_1_SELEX|OLIG2_OLIG2_1_S 
                   
                   
               
               
                 ELEX|BHLHE23_1|OLIG2_1|OLIG3_1 
                   
                   
               
               
                   
               
               
                 GFI1B_sens_SOLEXA_5_FBgn0002573_B1H 
                 AAATAAATCACAGCA 
                 TGCTGTGATTTATTT 
               
               
                   
               
               
                 FOXN1_1 
                 AAAGCGTCGTT 
                 AACGACGCTTT 
               
               
                   
               
               
                 SHOX_PHOX2A_1_SELEX|PROP1_PROP1_1_SELEX|SHOX_P 
                 TAATTAAATTA 
                 TAATTTAATTA 
               
               
                 HOX26_2_SELEX|SHOX_PHOX26_1_SELEX|PHOX2A_2|PH 
                   
                   
               
               
                 OX26_2|PHOX26_3|PROP1_2 
                   
                   
               
               
                   
               
               
                 POU2F2_known11|POU2F2_known12 
                 TATGCAAATCA 
                 TGATTTGCATA 
               
               
                   
               
               
                 ATOH7_pTH5074_PBM 
                 AACATATGGC 
                 GCCATATGTT 
               
               
                   
               
               
                 FOXD1_MA0546.1_ChIP-seq 
                 AAAGTAAACA 
                 TGTTTACTTT 
               
               
                   
               
               
                 NR2E1_pTH6281_PBM 
                 AGAGGTCAAT 
                 ATTGACCTCT 
               
               
                   
               
               
                 AHR_AHR_si_HocoMoco 
                 GCACGCAAC 
                 GTTGCGTGC 
               
               
                   
               
               
                 GATA2_V$GATA1_02_Transfac|GATA_known4 
                 GTAAAGATAGGGGA 
                 TCCCCTATCTTTAC 
               
               
                   
               
               
                 AP1_known3 
                 ACTGAGTCATC 
                 GATGACTCAGT 
               
               
                   
               
               
                 STAT1_V$STAT1_03_Transfac 
                 CGGAAATC 
                 GATTTCCG 
               
               
                   
               
               
                 HDAC2_disc6 
                 AAGAAAAGAAAAAAA 
                 TTTTTTTCTTTTCTT 
               
               
                   
               
               
                 SIN3A_disc7 
                 CCCCGGACAGCGCC 
                 GGCGCTGTCCGGGG 
               
               
                   
               
               
                 TEF_V$HLF_01_Transfac|TEF_V$VBP_01_Transfac|HLF_I 
                 ATTACGTAAC 
                 GTTACGTAAT 
               
               
                   
               
               
                 ZEB1_GM12878_ZEB1_HudsonAlpha_ChIP-seq|ZEB1_disc1 
                 CAGGTGAG 
                 CTCACCTG 
               
               
                   
               
               
                 KLF4_KLF3_f1_HocoMoco 
                 AGCCACACCCAGGCA 
                 TGCCTGGGTGTGGCT 
               
               
                   
               
               
                 EP300_disc1|RXRA_disc3 
                 AATGAGTCAT 
                 ATGACTCATT 
               
               
                   
               
               
                 HNFIA_HNF1B_1_SELEX|HNF1B_3 
                 GTTAATCATTAAC 
                 GTTAATGATTAAC 
               
               
                   
               
               
                 LMX1A_CG32105_Cell_FBgn0052105_B1H 
                 ATTAATTAG 
                 CTAATTAAT 
               
               
                   
               
               
                 RBPJ_1 
                 CGTGGGAA 
                 TTCCCACG 
               
               
                   
               
               
                 NKX6-3_Nkx6-1_2825_PBM|N KX6-3_N kx6-3_3446_PBM 
                 ATTAATTAC 
                 GTAATTAAT 
               
               
                   
               
               
                 OSR2_sob_SOLEXA_5_FBgn0004892_B1H 
                 AAAAACAGTAGCCG 
                 CGGCTACTGTTTTT 
               
               
                   
               
               
                 FOXP4_CG2052_SOLEXA_2.5_FBgn0039905_B1H 
                 AAAAAAAAAAAAACC 
                 GGTTTTTTTTTTTTT 
               
               
                   
               
               
                 TCF12_disc5 
                 CCAGCTGCCCC 
                 GGGGCAGCTGG 
               
               
                   
               
               
                 USF1_V$USF_C_Transfac|MYC_known7 
                 CCACGTGC 
                 GCACGTGG 
               
               
                   
               
               
                 BDP1_disc3 
                 CCCACAGCCTCGTC 
                 GACGAGGCTGTGGG 
               
               
                   
               
               
                 THRB_THA_f2_HocoMoco 
                 CTGACCTGAAGTGACCC 
                 GGGTCACTTCAGGTCAG 
               
               
                   
               
               
                 AR_V$GR_Q6_Transfac|NR3C1_known1 
                 CTAGAACACAGTGTACC 
                 TGGGTACACTGTGTTCT 
               
               
                   
                 CA 
                 AG 
               
               
                   
               
               
                 TEAD3_TEAD3_2_SELEX|TEAD3_2 
                 ACATTCCA 
                 TGGAATGT 
               
               
                   
               
               
                 SREBF2_pTH4327_PBM 
                 TCACGCGA 
                 TCGCGTGA 
               
               
                   
               
               
                 MAFK_MAFK_4_SELEX|MAF_known9 
                 ATGCTGAGTCAGCGA 
                 TCGCTGACTCAGCAT 
               
               
                   
               
               
                 ATF3_HepG2_ATF3_HudsonAlpha_ChIP- 
                 GGTCACGTGAC 
                 GTCACGTGACC 
               
               
                 seq|ATF3_GM12878_ATF3_HudsonAlpha_ChIP- 
                   
                   
               
               
                 seq|USF1_HeLa-S3_USF2_Stanford_ChIP-seq|ATF3_H1- 
                   
                   
               
               
                 hESC_ATF3_HudsonAlpha_ChIP-seq 
                   
                   
               
               
                   
               
               
                 MYC_K562_CMYC_Stanford_ChIP- 
                 GAGCACGTGGC 
                 GCCACGTGCTC 
               
               
                 seq|MYC_HepG2_CMYC_UT-A_ChIP- 
                   
                   
               
               
                 seq|MYC_MYC_f1_HocoMoco 
                   
                   
               
               
                   
               
               
                 DPRX_DPRX_1_SELEX|DPRX_1 
                 ACGGATTAGC 
                 GCTAATCCGT 
               
               
                   
               
               
                 MNX1_1 
                 CGCCACTAATTAGTAC 
                 GTACTAATTAGTGGCG 
               
               
                   
               
               
                 HMGA2_pTH3046_PBM 
                 CCGCAATAAA 
                 TTTATTGCGG 
               
               
                   
               
               
                 NRF1_disc1 
                 CACTGCGCATGCGCA 
                 TGCGCATGCGCAGTG 
               
               
                   
               
               
                 PBX3_disc1 
                 AGCCAATGAG 
                 CTCATTGGCT 
               
               
                   
               
               
                 TEF_TEF_2_SELEX|NFIL3_NFIL3_1_SELEX|NFIL3_3|TEF_3 
                 TATTACATAACA 
                 TGTTATGTAATA 
               
               
                   
               
               
                 SP1_known5 
                 AGGGGGCGGGGCC 
                 GGCCCCGCCCCCT 
               
               
                   
               
               
                 NKX6-1_3 
                 AGTAATTAATTACTTC 
                 GAAGTAATTAATTACT 
               
               
                   
               
               
                 KLF4_MA0599.1_ChIP-seq|TATA_disc4|SP1_known4 
                 GCCCCGCCCC 
                 GGGGCGGGGC 
               
               
                   
               
               
                 NKX2-5_5 
                 AAATTCAAGTGGCTTA 
                 TAAGCCACTTGAATTT 
               
               
                   
               
               
                 KLF4_luna_SOLEXA_5_FBgn0040765_B1H 
                 AAATGGGCGTGGCC 
                 GGCCACGCCCATTT 
               
               
                   
               
               
                 PAX9_PAX5_1_SELEX|PAX5_known5 
                 CGTCACGCATGAGTGCT 
                 GAGCACTCATGCGTGAC 
               
               
                   
                 C 
                 G 
               
               
                   
               
               
                 DLX1_Dlx2_2273_PBM|DLX1_Dlx3_1030_PBM|DLX1_Dlx1 
                 ATAATTGCC 
                 GGCAATTAT 
               
               
                 _1741_PBM 
                   
                   
               
               
                   
               
               
                 NAIF1_pTH8560_PBM 
                 CTTACGCAA 
                 TTGCGTAAG 
               
               
                   
               
               
                 NR3C1_known9 
                 AGGGGAGGTACACGGT 
                 CCCAAAAGAACACCGTG 
               
               
                   
                 GTTCTTTTGGG 
                 TACCTCCCCT 
               
               
                   
               
               
                 DOBOX4_1 
                 TAAATAGATACCCCATA 
                 TATGGGGTATCTATTTA 
               
               
                   
               
               
                 ALX4_2 
                 CGCATTAATTAATTACC 
                 GGTAATTAATTAATGCG 
               
               
                   
               
               
                 MTF1_1 
                 GGGCCGTGTGCAGA 
                 TCTGCACACGGCCC 
               
               
                   
               
               
                 TCF12_disc2 
                 TGAGTAAACA 
                 TGTTTACTCA 
               
               
                   
               
               
                 TFAP2A_MA0003.2_ChIP-seq 
                 CATTGCCTCAGGGCA 
                 TGCCCTGAGGCAATG 
               
               
                   
               
               
                 FOXO6_pTH3846_PBM|FOXD1_pTH5334_PBM|FOXD1_FO 
                 TGTAAACAA 
                 TTGTTTACA 
               
               
                 XB1_4_SELEX|FOXB1_4 
                   
                   
               
               
                   
               
               
                 ATF3_disc4 
                 CCCCGCGCCC 
                 GGGCGCGGGG 
               
               
                   
               
               
                 SPDEF_1 
                 AAAAATCCGGATGTAC 
                 GTACATCCGGATTTTT 
               
               
                   
               
               
                 RFX8_V$RFX1_02_Transfac|RFX5_known2 
                 TAGTAGCCATGGCAACA 
                 TTGTTGCCATGGCTACT 
               
               
                   
                 A 
                 A 
               
               
                   
               
               
                 MAFA_MAFA_f1_HocoMoco 
                 CGAAGGCTGCGGGGTC 
                 GTGCTGACCCCGCAGCC 
               
               
                   
                 AGCAC 
                 TCG 
               
               
                   
               
               
                 IRF_disc2 
                 ATGACTCATA 
                 TATGAGTCAT 
               
               
                   
               
               
                 PKNOX2_MA0498.1_ChIP-seq 
                 AGCTGTCACTCACCT 
                 AGGTGAGTGACAGCT 
               
               
                   
               
               
                 JUN_JUNB_f1_HocoMoco|MYC_disc3 
                 ATGACTCATC 
                 GATGAGTCAT 
               
               
                   
               
               
                 ZFP161_Zfp161_2858_PBM 
                 CGCGCGCAC 
                 GTGCGCGCG 
               
               
                   
               
               
                 GATA_disc4 
                 ATCTGATA 
                 TATCAGAT 
               
               
                   
               
               
                 STAT2_STAT2_f1_HocoMoco 
                 GGAAAACGAAACTGA 
                 TCAGTTTCGTTTTCC 
               
               
                   
               
               
                 IKZF2_2 
                 TATAGGGATAA 
                 TTATCCCTATA 
               
               
                   
               
               
                 MAX_Max_3864_PBM|MAX_pTH4381_PBM|MAX_Max_3 
                 ACCACGTGG 
                 CCACGTGGT 
               
               
                 863_PBM 
                   
                   
               
               
                   
               
               
                 HNF4G_HNF4A_3_SELEX|HNF4_known18 
                 ATTGGACTTTGGACCC 
                 GGGTCCAAAGTCCAAT 
               
               
                   
               
               
                 MAX_MA0058.2_ChIP-seq|MYC_MA0147.2_ChIP-seq 
                 AAGCACATGG 
                 CCATGTGCTT 
               
               
                   
               
               
                 RFX8_HepG2_RFX5_Stanford_ChIP-seq 
                 CTGTTGCTAGGCAGA 
                 TCTGCCTAGCAACAG 
               
               
                   
               
               
                 ZEB1_V$AREB6_03_Transfac|ZEB1_known3 
                 CTGCACCTGTGC 
                 GCACAGGTGCAG 
               
               
                   
               
               
                 GCM1_I$GCM_01_Transfac 
                 AAACCCGCATATT 
                 AATATGCGGGTTT 
               
               
                   
               
               
                 CTCF_disc6 
                 ACCTAGTG 
                 CACTAGGT 
               
               
                   
               
               
                 ESRRG_T-47D_ERALPHA_HudsonAlpha_ChIP-seq 
                 CAAGGTCAGGGTGACCT 
                 CCAGGTCACCCTGACCT 
               
               
                   
                 GG 
                 TG 
               
               
                   
               
               
                 VTN_pTH6379_PBM 
                 AATTAATTAG 
                 CTAATTAATT 
               
               
                   
               
               
                 LHX3_1 
                 AATTAATTAA 
                 TTAATTAATT 
               
               
                   
               
               
                 IRF_known3 
                 CAGTTTCACTTTCCC 
                 GGGAAAGTGAAACTG 
               
               
                   
               
               
                 GLIS2_GLIS2_1_SELEX|GLIS2_2 
                 CTTCGCGGGGGGTC 
                 GACCCCCCGCGAAG 
               
               
                   
               
               
                 THRB_THRB_2_SELEX|THRB_2 
                 GTGACCTTAATAAGGTC 
                 GTGACCTTATTAAGGTC 
               
               
                   
                 AC 
                 AC 
               
               
                   
               
               
                 HOXA4_pTH5887_PBM 
                 CCTAATGAG 
                 CTCATTAGG 
               
               
                   
               
               
                 YY2_NT2-D1_YY1_UCD_ChIP-seq 
                 CAAGATGGCGGCC 
                 GGCCGCCATCTTG 
               
               
                   
               
               
                 TFAP4_TFAP4_si_HocoMoco 
                 CCGCAGCTGGC 
                 GCCAGCTGCGG 
               
               
                   
               
               
                 AL662830.5_GM12878_PBX3_HudsonAlpha_ChIP-seq 
                 CTCTGATTGGCCGGC 
                 GCCGGCCAATCAGAG 
               
               
                   
               
               
                 TATA_disc10 
                 CCGCGGCGGC 
                 GCCGCCGCGG 
               
               
                   
               
               
                 SIX6_Optix_Cell_FBgn0025360_B1H|SIX6_Optix_SOLEXA_F 
                 AAGTGATA 
                 TATCACTT 
               
               
                 Bgn0025360_B1H 
                   
                   
               
               
                   
               
               
                 HNF1A_Tcf2_0913_PBM 
                 CTGGTTAA 
                 TTAACCAG 
               
               
                   
               
               
                 ETV5_MA0474.1_ChIP-seq|ETV5_MA0475.1_ChIP-seq 
                 ACAGGAAGTGG 
                 CCACTTCCTGT 
               
               
                   
               
               
                 CEBPB_known3 
                 GCCTTACCAAATA 
                 TATTTGGTAAGGC 
               
               
                   
               
               
                 SOX15_SOX15_2_SELEX|SOX15_3 
                 ATCAATAACATTGAT 
                 ATCAATGTTATTGAT 
               
               
                   
               
               
                 STAT_disc3 
                 AGTTTCATTTTC 
                 GAAAATGAAACT 
               
               
                   
               
               
                 MAFB_MAFB_f1_HocoMoco 
                 CCGTCAGCA 
                 TGCTGACGG 
               
               
                   
               
               
                 TFAP4_V$AP4_01_Transfac|TFAP4_1 
                 AGAACCAGCTGCGGTCA 
                 CTGACCGCAGCTGGTTC 
               
               
                   
                 G 
                 T 
               
               
                   
               
               
                 ATF7_pTH5083_PBM 
                 AATGACGTCA 
                 TGACGTCATT 
               
               
                   
               
               
                 SOX9_SOX10_5_SELEX|SOX10_7 
                 TGAATGTTCAGTCA 
                 TGACTGAACATTCA 
               
               
                   
               
               
                 NRF1_NRF1_f1_HocoMoco 
                 CTGCGCATGCGC 
                 GCGCATGCGCAG 
               
               
                   
               
               
                 BCL6B_1 
                 CAAATTCCTCGAAAGA 
                 TCTTTCGAGGAATTTG 
               
               
                   
               
               
                 E2F2_1 
                 ATAAAGGCGCGCGAT 
                 ATCGCGCGCCTTTAT 
               
               
                   
               
               
                 NR2C2_HeLa-53_TR4_UCD_ChIP-seq 
                 ACCACTTCCGGGTCA 
                 TGACCCGGAAGTGGT 
               
               
                   
               
               
                 VSX1_1 
                 AATTATTAATTAACTCG 
                 CGAGTTAATTAATAATT 
               
               
                   
               
               
                 MYCN_V$NMYC_01_Transfac|MYCN_1 
                 TCCCACGTGTCA 
                 TGACACGTGGGA 
               
               
                   
               
               
                 TCF7L2_MA0237.2_ChIP-chip 
                 ATCAAAGGAGCCGA 
                 TCGGCTCCTTTGAT 
               
               
                   
               
               
                 MYC_disc5 
                 GCTGATGCAA 
                 TTGCATCAGC 
               
               
                   
               
               
                 SOX18_SOX18_3_SELEX|SOX18_4 
                 ATGAATGGAATTCAT 
                 ATGAATTCCATTCAT 
               
               
                   
               
               
                 DLX1_DLX1_1_SELEX|DLX1_2 
                 CCTAATTATC 
                 GATAATTAGG 
               
               
                   
               
               
                 SMAD2_SMAD2_si_HocoMoco 
                 CAGACGGACAC 
                 GTGTCCGTCTG 
               
               
                   
               
               
                 CDX1_1 
                 TAAGGTAATAAAATTA 
                 TAATTTTATTACCTTA 
               
               
                   
               
               
                 NR2C2_pTH6019_PBM 
                 AAGGTCAA 
                 TTGACCTT 
               
               
                   
               
               
                 NR4A_known1 
                 AAGGTCAC 
                 GTGACCTT 
               
               
                   
               
               
                 RBPJ_2 
                 ACCGTGGGAAA 
                 TTTCCCACGGT 
               
               
                   
               
               
                 MEOX2_MEOX2_2_SELEX|MEOX2_2 
                 GTAATTACCGTAATTAA 
                 TTAATTACGGTAATTAC 
               
               
                   
               
               
                 MYC_disc7 
                 AACACGTG 
                 CACGTGTT 
               
               
                   
               
               
                 CTCF_disc5 
                 CCAGCAGGGGGCGG 
                 CCGCCCCCTGCTGG 
               
               
                   
               
               
                 KLF4_V$AP2REP_01_Transfac|KLF12_1 
                 CAGTGGG 
                 CCCACTG 
               
               
                   
               
               
                 NR5A1_pTH5709_PBM 
                 AAGGTCAT 
                 ATGACCTT 
               
               
                   
               
               
                 MLXIPL_MLXPL_f1_HocoMoco 
                 CCACGGCGGTGTCACAT 
                 GCATGTGACACCGCCGT 
               
               
                   
                 GC 
                 GG 
               
               
                   
               
               
                 IRF_disc6 
                 AAGTTTCA 
                 TGAAACTT 
               
               
                   
               
               
                 CTCF_HepG2_CTCF_Broad_ChIP-seq 
                 ATAGCGCCCCCTGGTGG 
                 GCCACCAGGGGGCGCT 
               
               
                   
                 C 
                 AT 
               
               
                   
               
               
                 NFE2_known1 
                 GTGACTCAGCA 
                 TGCTGAGTCAC 
               
               
                   
               
               
                 GATA2_V$GATA2_02_Transfac|GATA2_V$GATA3_02_Tran 
                 AGAGATAAGA 
                 TCTTATCTCT 
               
               
                 sfac|GATA2_V$GATA2_03_Transfac 
                   
                   
               
               
                   
               
               
                 CTCF_HUVEC_CTCF_UT-A_ChIP-seq 
                 AGTGCCATCTAGTGG 
                 CCACTAGATGGCACT 
               
               
                   
               
               
                 HIF1A_1 
                 CGTACGTGCGGC 
                 GCCGCACGTACG 
               
               
                   
               
               
                 THRB_THRB_3_SELEX|THRB_3 
                 GTGACCTTACATAAGGT 
                 GTGACCTTATGTAAGGT 
               
               
                   
                 CAC 
                 CAC 
               
               
                   
               
               
                 SRF_K562_SRF_HudsonAlpha_ChIP-seq 
                 AGTTGCCTTATATGGTC 
                 GACCATATAAGGCAACT 
               
               
                   
               
               
                 ARID5A_Arid5a_3770_PBM 
                 GATAATATTGA 
                 TCAATATTATC 
               
               
                   
               
               
                 MYB_V$VMYB_01_Transfac 
                 AATAACGGAA 
                 TTCCGTTATT 
               
               
                   
               
               
                 TCF4_pTH5071_PBM 
                 AACACCTGG 
                 CCAGGTGTT 
               
               
                   
               
               
                 TATA_disc6 
                 CCAATCAGAA 
                 TTCTGATTGG 
               
               
                   
               
               
                 POU1F1_1 
                 ATGAATAAAT 
                 ATTTATTCAT 
               
               
                   
               
               
                 IRX6_1 
                 AAAATACATGTAAAAAT 
                 ATTTTTACATGTATTTT 
               
               
                   
               
               
                 ALX4_1 
                 CCTGAGAATAATC 
                 GATTATTCTCAGG 
               
               
                   
               
               
                 E2F3_E2F3_2_SELEX|E2F_known25 
                 AAAAATGGCGCCATTTT 
                 AAAAATGGCGCCATTTT 
               
               
                   
                 T 
                 T 
               
               
                   
               
               
                 NR1I3_NR1I3_si_HocoMoco 
                 AAGTTCAT 
                 ATGAACTT 
               
               
                   
               
               
                 POU6F1_3 
                 AAACATAATGAGGTTGC 
                 GCAACCTCATTATGTTT 
               
               
                   
               
               
                 NR1I2_NR1I2_si_HocoMoco 
                 AAGTTCAC 
                 GTGAACTT 
               
               
                   
               
               
                 SOX9_SOX9_f1_HocoMoco 
                 AGAACAATGGG 
                 CCCATTGTTCT 
               
               
                   
               
               
                 PLAGL1_1 
                 CTAGGGGCGCCCCCAA 
                 TTGGGGGCGCCCCTAG 
               
               
                   
               
               
                 EP300_V$P300_01_Transfac|EP300_known1 
                 ACAGGGAGTGAGTG 
                 CACTCACTCCCTGT 
               
               
                   
               
               
                 IRF4_IRF4_1_SELEX|IRF4_2 
                 CCGAAACCGAAACTA 
                 TAGTTTCGGTTTCGG 
               
               
                   
               
               
                 SRF_F$MCM1_01_Transfac 
                 TTACCTGATTAGGAAA 
                 TTTCCTAATCAGGTAA 
               
               
                   
               
               
                 BSX_Bsx_3483_PBM 
                 ACCCATTAA 
                 TTAATGGGT 
               
               
                   
               
               
                 STAT3_V$STAT3_02_Transfac 
                 GGCTTCCC 
                 GGGAAGCC 
               
               
                   
               
               
                 FOXD1_V$HFH3_01_Transfac|FOXI1_1 
                 GGATGTTTGTTTA 
                 TAAACAAACATCC 
               
               
                   
               
               
                 AHR::ARNT::HIF1A_1 
                 CCGCACGCA 
                 TGCGTGCGG 
               
               
                   
               
               
                 NKX2-8_1 
                 AATTTAAGTACTTAAAA 
                 TTTTAAGTACTTAAATT 
               
               
                   
               
               
                 MEF2B_Mv88_Ch|P-seq|MEF2_known11 
                 CTATAAATAG 
                 CTATTTATAG 
               
               
                   
               
               
                 EMX2_pTH5673_PBM|HOXC5_PDX1_do_HocoMoco|EVX2 
                 CTAATTACC 
                 GGTAATTAG 
               
               
                 _Evx1_3952_PBM|HOXA4_Hoxa2_3079_PBM|EVX2_pTH6 
                   
                   
               
               
                 436_PBM|VAX1_Vax2_3500_PBM 
                   
                   
               
               
                   
               
               
                 NKX2-5_Nkx2-2_2823_PBM 
                 GCACTTAAA 
                 TTTAAGTGC 
               
               
                   
               
               
                 STAT3_GM12878_STAT3_Stanford_ChIP-seq 
                 CAGGTGATTTCCGGGAA 
                 CATTTCCCGGAAATCAC 
               
               
                   
                 ATG 
                 CTG 
               
               
                   
               
               
                 MYF6_1 
                 CGGACACCTGTTCTTC 
                 GAAGAACAGGTGTCCG 
               
               
                   
               
               
                 ALX1_V$CHX10_01_Transfac|VSX2_1 
                 GGCTAATTAGCGAA 
                 TTCGCTAATTAGCC 
               
               
                   
               
               
                 CEBPA_V$CEBP_01_Transfac 
                 AACTTACCAAACA 
                 TGTTTGGTAAGTT 
               
               
                   
               
               
                 DMBX1_ALX1_si_Hoco Moco 
                 ATAATTGGATTA 
                 TAATCCAATTAT 
               
               
                   
               
               
                 TAL1_known5 
                 AACAGATGGTCG 
                 CGACCATCTGTT 
               
               
                   
               
               
                 FOXP4_MA0593.1_ChIP-seq 
                 AAGTAAACAAA 
                 TTTGTTTACTT 
               
               
                   
               
               
                 FOXD1_MA0041.1_SELEX|FOXD3_2 
                 AAACAAACATTC 
                 GAATGTTTGTTT 
               
               
                   
               
               
                 TCF7L2_LEF1_1_SELEX|TCF7L2_known7 
                 AAAGATCAAAGGGTT 
                 AACCCTTTGATCTTT 
               
               
                   
               
               
                 AR_GCR_si_HocoMoco|AR_PRGR_f1_HocoMoco 
                 AGAACAG 
                 CTGTTCT 
               
               
                   
               
               
                 TAL1_known2 
                 GTCACCATCTGTTCGA 
                 TCGAACAGATGGTGAC 
               
               
                   
               
               
                 NFY_known6 
                 CTCAGCCAATCAGCGC 
                 GCGCTGATTGGCTGAG 
               
               
                   
               
               
                 TCF4_sc_da_SANGER_10_FBgn0000413_B1H|TCF4_ac_da 
                 ACACCTGC 
                 GCAGGTGT 
               
               
                 SANGER_5_FBgn0000413_B1H 
                   
                   
               
               
                   
               
               
                 DBX2_MA0174.1_B1H 
                 TAATAAA 
                 TTTATTA 
               
               
                   
               
               
                 TCF4_H1-hESC_TCF12_HudsonAlpha_ChIP- 
                 ACACCTGG 
                 CCAGGTGT 
               
               
                 seq|TCF12_disc1 
                   
                   
               
               
                   
               
               
                 ENSG00000234254_Tgif1_2342_PBM 
                 AGCTGTCAAT 
                 ATTGACAGCT 
               
               
                   
               
               
                 NR3C1_disc6 
                 CTCCCTGTCCCCTC 
                 GAGGGGACAGGGAG 
               
               
                   
               
               
                 STAT_known12 
                 GATTTCCA 
                 TGGAAATC 
               
               
                   
               
               
                 MAFK_MA0496.1_ChIP-seq 
                 AAATTGCTGACTCAG 
                 CTGAGTCAGCAATTT 
               
               
                   
               
               
                 SPIC_GM12878_PU1_HudsonAlpha_ChIP-seq 
                 AAAAAGAGGAAGTGAA 
                 AGTTTCACTTCCTCTTTT 
               
               
                   
                 ACT 
                 T 
               
               
                   
               
               
                 HES4_HES1_f1_HocoMoco 
                 CCGCCACGAGCCC 
                 GGGCTCGTGGCGG 
               
               
                   
               
               
                 SNAI3_pTH2340_PBM 
                 AGCTGTCAAA 
                 TTTGACAGCT 
               
               
                   
               
               
                 AL662828.6_ATF6A_si_HocoMoco 
                 CCACGTCACCAC 
                 GTGGTGACGTGG 
               
               
                   
               
               
                 RFX5_known5 
                 ACCGTTGCTATGGTA 
                 TACCATAGCAACGGT 
               
               
                   
               
               
                 ESRRG_ESRRA_2_SELEX|ESRRG_ESRRA_5_SELEX|ESRRA_k 
                 AAGGTCATTCAAGGTCA 
                 TGACCTTGAATGACCTT 
               
               
                 nown8 
                   
                   
               
               
                   
               
               
                 MYBL2_MYBB_f1_HocoMoco 
                 TCAACCTGCA 
                 TGCAGGTTGA 
               
               
                   
               
               
                 NAIF1_pTH9299_PBM 
                 TTACGCAAA 
                 TTTGCGTAA 
               
               
                   
               
               
                 FOSL1_FOSB_f1_HocoMoco 
                 CTGACTCATC 
                 GATGAGTCAG 
               
               
                   
               
               
                 SPIC_MA0081.1_SELEX|SPIB_1 
                 AGAGGAA 
                 TTCCTCT 
               
               
                   
               
               
                 STAT_disc1 
                 TTCCAGGAAA 
                 TTTCCTGGAA 
               
               
                   
               
               
                 LHX1_Lhx3_3431_PBM 
                 ATTTAATTA 
                 TAATTAAAT 
               
               
                   
               
               
                 ZBTB7C_ZBT7A_a_HocoMoco 
                 AGCAGTGGGTCCCCCAG 
                 CTGGGGGACCCACTGCT 
               
               
                   
               
               
                 TP53_Tp53_2_SELEX|TP53_6 
                 ACATGTCATAGACATGT 
                 ACATGTCTATGACATGT 
               
               
                   
               
               
                 HSF_disc1 
                 GTTATGCAAC 
                 GTTGCATAAC 
               
               
                   
               
               
                 ZNF8_1 
                 TCTTTGGCGTACCCTAA 
                 TTAGGGTACGCCAAAGA 
               
               
                   
               
               
                 CDX2_CDX1_f1_HocoMoco 
                 ACATAAAT 
                 ATTTATGT 
               
               
                   
               
               
                 HOXB13_1 
                 AACCCAATAAAATTCG 
                 CGAATTTTATTGGGTT 
               
               
                   
               
               
                 PITX2_1 
                 TGTAATCCCAA 
                 TTGGGATTACA 
               
               
                   
               
               
                 PROX1_PROX1_1_SELEX|PROX1_1 
                 CAAGACGCCTTA 
                 TAAGGCGTCTTG 
               
               
                   
               
               
                 FOXM1_1 
                 AGATGGACT 
                 AGTCCATCT 
               
               
                   
               
               
                 TATA_disc3 
                 ACCGGAAG 
                 CTTCCGGT 
               
               
                   
               
               
                 BPTF_BPTF_si_HocoMoco 
                 GAACACAACAAA 
                 TTTGTTGTGTTC 
               
               
                   
               
               
                 ARID3C_pTH5119_PBM 
                 TAATCAAA 
                 TTTGATTA 
               
               
                   
               
               
                 IRF9_IRF9_1_SELEX|IRF_known21 
                 AACGAAACCGAAACT 
                 AGTTTCGGTTTCGTT 
               
               
                   
               
               
                 BARX1_BARX1_1_SELEX|BARX1_2 
                 CAATTAAATACCGATTA 
                 TAATCGGTATTTAATTG 
               
               
                   
               
               
                 FOXD1_bin_FlyReg_FBgn0045759_B1H 
                 TAAACAAAGA 
                 TCTTTGTTTA 
               
               
                   
               
               
                 HLX_1 
                 CCATAATTAATTACA 
                 TGTAATTAATTATGG 
               
               
                   
               
               
                 STAT3_MA0144.2_ChIP-seq 
                 CTTCTGGGAAA 
                 TTTCCCAGAAG 
               
               
                   
               
               
                 HSF1_HSF1_2_SELEX|HSF2_HSF2_1_SELEX|HSF1_HSF4_1_ 
                 GAACGTTCTAGAA 
                 TTCTAGAACGTTC 
               
               
                 SELEX|HSFLHSF1_1_SELEX|HSF_known4|HSF_known5|H 
                   
                   
               
               
                 SF2_2|HSF4_1 
                   
                   
               
               
                   
               
               
                 STAT1_K562_STAT1_Stanford_ChIP-seq 
                 TTTCCCGGAAA 
                 TTTCCGGGAAA 
               
               
                   
               
               
                 EGR1_disc4 
                 AACTACAATTCCCAGAA 
                 GCGGGGCATTCTGGGA 
               
               
                   
                 TGCCCCGC 
                 ATTGTAGTT 
               
               
                   
               
               
                 GBX2_Gbx2_1_SELEX|GBX2_GBX2_3_SELEX|GBX2_GBX2_ 
                 ACCAATTAGC 
                 GCTAATTGGT 
               
               
                 1_SELEX|GBX2_2|GBX2_4|GBX2_5 
                   
                   
               
               
                   
               
               
                 ISL2_1 
                 AAATTAATTGATTTTG 
                 CAAAATCAATTAATTT 
               
               
                   
               
               
                 TFAP4_TFAP4_2_SELEX|TFAP4_TFAP4_1_SELEX|TFAP4_5| 
                 AACAGCTGAT 
                 ATCAGCTGTT 
               
               
                 TFAP4_6 
                   
                   
               
               
                   
               
               
                 CTCF_HSMMtube_CTCF_Broad_ChIP-seq 
                 GGCCACCAGGGGGCGC 
                 TAGCGCCCCCTGGTGGC 
               
               
                   
                 TA 
                 C 
               
               
                   
               
               
                 BARHL1_1 
                 AACAACCAATTAATTC 
                 GAATTAATTGGTTGTT 
               
               
                   
               
               
                 EOMES_pTH2659_PBM 
                 GAGGTGTGAA 
                 TTCACACCTC 
               
               
                   
               
               
                 ZBED1_ZBED1_1_SELEX|ZBED1_1 
                 CTATCGCGACATA 
                 TATGTCGCGATAG 
               
               
                   
               
               
                 FOXJ3_MA0296.1_PBM 
                 TCCTCTTTGTTTACAATT 
                 TGAATTGTAAACAAAGA 
               
               
                   
                 CA 
                 GGA 
               
               
                   
               
               
                 RAD21_disc3 
                 ACAAGAGGGC 
                 GCCCTCTTGT 
               
               
                   
               
               
                 RFX8_MA0509.1_ChIP-seq 
                 GTTGCCATGGCAAC 
                 GTTGCCATGGCAAC 
               
               
                   
               
               
                 AL662830.5_pTH6425_PBM 
                 CACATCAA 
                 TTGATGTG 
               
               
                   
               
               
                 IRF_disc5 
                 AGGAAGTGAA 
                 TTCACTTCCT 
               
               
                   
               
               
                 SRF_disc1 
                 CCTTATAAGG 
                 CCTTATAAGG 
               
               
                   
               
               
                 E2F_known10|E2F_known11|E2F_known13 
                 GCGGGAAA 
                 TTTCCCGC 
               
               
                   
               
               
                 REST_GM12878_NRSF_HudsonAlpha_ChIP-seq 
                 TCCATGGTGCTGAA 
                 TTCAGCACCATGGA 
               
               
                   
               
               
                 ATF1_CREB1_f1_HocoMoco|ATF3_known14 
                 GTGACGTCA 
                 TGACGTCAC 
               
               
                   
               
               
                 PROP1_PROP1_f1_HocoMoco 
                 GAGAAATTAATATAA 
                 TTATATTAATTTCTC 
               
               
                   
               
               
                 ARNT2_V$ARNT_02_Transfac|ARNT_2 
                 CAAAGGTCACGTGACCT 
                 CAAAGGTCACGTGACCT 
               
               
                   
                 TTG 
                 TTG 
               
               
                   
               
               
                 TEAD3_TEAD3_si_HocoMoco 
                 GATATTTCTGCTCTA 
                 TAGAGCAGAAATATC 
               
               
                   
               
               
                 BCL6_BCL6_f1_HocoMoco 
                 AAAAGCTTTCTAGGAA 
                 TTCCTAGAAAGCTTTT 
               
               
                   
               
               
                 E2F_disc3 
                 CTTTCCCGCCCCC 
                 GGGGGCGGGAAAG 
               
               
                   
               
               
                 USF1_USF1_f1_HocoMoco|MAX_K562_MAX_Stanford_ChI 
                 CCACGTGACC 
                 GGTCACGTGG 
               
               
                 P- 
                   
                   
               
               
                 seq|MITF_pTH5465_PBM|MITF_pTH5065_PBM|MITF_pT 
                   
                   
               
               
                 H5057_PBM|MXI1_known1 
                   
                   
               
               
                   
               
               
                 DMBX1_ALX3_3_SELEX|ALX3_4 
                 CTAATTTAATTAA 
                 TTAATTAAATTAG 
               
               
                   
               
               
                 PLAG1_MA0163.1_B1H|PLAG1_1 
                 CCCCCTTGGGCCCC 
                 GGGGCCCAAGGGGG 
               
               
                   
               
               
                 SPI1_disc3 
                 AGGAGGGGGCAGTG 
                 CACTGCCCCCTCCT 
               
               
                   
               
               
                 HOXC9_MA0165.1_B1H 
                 TCATAAA 
                 TTTATGA 
               
               
                   
               
               
                 REST_REST_f1_HocoMoco 
                 GGGCGCTGTCCATGGTG 
                 TTCAGCACCATGGACAG 
               
               
                   
               
               
                   
                 CTGAA 
                 CGCCC 
               
               
                   
               
               
                 HOXC10_MA0594.1_ChIP-seq 
                 GCCATAAATCA 
                 TGATTTATGGC 
               
               
                   
               
               
                 TBPL2_Spt15_PBM 
                 AATATAT 
                 ATATATT 
               
               
                   
               
               
                 LHX9_LHX2_1_SELEX|LHX2_2 
                 ACTAATTAAC 
                 GTTAATTAGT 
               
               
                   
               
               
                 MAFA_NRL_1_SELEX|NRL_1 
                 AATTTGCTGAC 
                 GTCAGCAAATT 
               
               
                   
               
               
                 HNF4_disc1 
                 AGGTCAAAGTCCA 
                 TGGACTTTGACCT 
               
               
                   
               
               
                 BDP1_disc2 
                 GGATTCGAAC 
                 GTTCGAATCC 
               
               
                   
               
               
                 YY2_GM12891_YY1_HudsonAlpha_ChIP-seq 
                 AAGATGGCGGC 
                 GCCGCCATCTT 
               
               
                   
               
               
                 BRCA1_HeLa-S3_BRCA1_Stanford_ChIP-seq 
                 CAAATCTCGCGAGA 
                 TCTCGCGAGATTTG 
               
               
                   
               
               
                 ATF3_known8 
                 CGTTGACGTCAC 
                 GTGACGTCAACG 
               
               
                   
               
               
                 FIGLA_FIGLA_1_SELEX|TCF4_dei_da_SANGER_5_FBgn000 
                 AACAGGTGGT 
                 ACCACCTGTT 
               
               
                 0413_B1H|FIGLA_1 
                   
                   
               
               
                   
               
               
                 ZIC4_ZIC1_1_SELEX|ZIC1_3 
                 CACAGCGGGGGGTC 
                 GACCCCCCGCTGTG 
               
               
                   
               
               
                 E2F4_E2F4_1_SELEX|E2F_kn0wn29 
                 AATGGCGCCAAA 
                 TTTGGCGCCATT 
               
               
                   
               
               
                 EVX2_Eve_Cell_FBgn0000606_B1H|EVX2_Evx2_2645_PBM 
                 GCTAATGA 
                 TCATTAGC 
               
               
                   
               
               
                 ZBTB3_1 
                 AATCGCACTGCATTCCG 
                 CGGAATGCAGTGCGATT 
               
               
                   
               
               
                 MLX_pTH5070_PBM 
                 CCACGTGATC 
                 GATCACGTGG 
               
               
                   
               
               
                 AL662830.5_Exd_Cell_FBgn0000611_B1H|AL662830.5_Ex 
                 TGTCAAAA 
                 TTTTGACA 
               
               
                 d_SOLEXA_FBgn0000611_B1H|AL662830.5_MA0222.1_B1 
                   
                   
               
               
                 H 
                   
                   
               
               
                   
               
               
                 ETS_known10 
                 CAATACCGGAAGTGTAA 
                 TTACACTTCCGGTATTG 
               
               
                   
               
               
                 UBP1_UBIP1_f1_HocoMoco 
                 GCAGAGA 
                 TCTCTGC 
               
               
                   
               
               
                 EGR3_Egr1_2580_PBM 
                 CGCCCCCGCA 
                 TGCGGGGGCG 
               
               
                   
               
               
                 HOXA9_1 
                 ACGGCCATAAAATTAAT 
                 ATTAATTTTATGGCCGT 
               
               
                   
               
               
                 POU3F3_pTH9225_PBM 
                 CTAATTATAC 
                 GTATAATTAG 
               
               
                   
               
               
                 SPZ1_SPZ1_f1_HocoMoco 
                 CCCAGGGTAACAGCCG 
                 CGGCTGTTACCCTGGG 
               
               
                   
               
               
                 BHLHE40_pTH5060_PBM 
                 ACACGTGCC 
                 GGCACGTGT 
               
               
                   
               
               
                 SIX5_known6 
                 AATAGGGTATCAATTAT 
                 ATAATTGATACCCTATT 
               
               
                   
               
               
                 MAF_known5 
                 AAGTCAGCATTTTTA 
                 TAAAAATGCTGACTT 
               
               
                   
               
               
                 HOXC5_Hoxb8_3780_PBM|HOXC5_Hoxa7_2668_PBM 
                 GGCCATTAA 
                 TTAATGGCC 
               
               
                   
               
               
                 HOXA7_2 
                 CGAGTTAATTAATAAGC 
                 GCTTATTAATTAACTCG 
               
               
                   
               
               
                 ARID5A_V$MRF2_01_Transfac|ARID56_1 
                 AACCACAATACCAA 
                 TTGGTATTGTGGTT 
               
               
                   
               
               
                 TCF7L2_disc2 
                 ACATCAAAGG 
                 CCTTTGATGT 
               
               
                   
               
               
                 IRF7_V$IRF7_01_Transfac|RF_known4 
                 CCAACTTTCGATTTCCTA 
                 TAGGAAATCGAAAGTTG 
               
               
                   
                   
                 G 
               
               
                   
               
               
                 SOX30_1 
                 AATTCCATTGTTCAAT 
                 ATTGAACAATGGAATT 
               
               
                   
               
               
                 PITX2_PITX1_2_SELEX|PITX2_PITX1_1_SELEX|PITX2_PITX3 
                 CTTAATCCC 
                 GGGATTAAG 
               
               
                 _1_SELEX|PITX1_2|PITX1_3|PITX3_2 
                   
                   
               
               
                   
               
               
                 PRDM1_disc2 
                 ATGACTCACC 
                 GGTGAGTCAT 
               
               
                   
               
               
                 SMAD3_1 
                 AGACAGACA 
                 TGTCTGTCT 
               
               
                   
               
               
                 ELF1_MA0026.1_SELEX 
                 CCGGAAG 
                 CTTCCGG 
               
               
                   
               
               
                 SOX1_Sox1_4_SELEX|SOX1_5 
                 TGAATAGTCATTCA 
                 TGAATGACTATTCA 
               
               
                   
               
               
                 FOXA_known1 
                 TAAATAAATATTTCA 
                 TGAAATATTTATTTA 
               
               
                   
               
               
                 LCOR_pTH9275_PBM 
                 ATTTTGGG 
                 CCCAAAAT 
               
               
                   
               
               
                 DMBX1_Alx4_1_SELEX|ALX4_4 
                 ATAATTAAATTAA 
                 TTAATTTAATTAT 
               
               
                   
               
               
                 CREB3L2_Creb3l2_1_SELEX|CREB3L2_1 
                 TGATGACGTGGCA 
                 TGCCACGTCATCA 
               
               
                   
               
               
                 HOXC6_HXC8_f1_HocoMoco 
                 GGGCATCAATCAAA 
                 TTTGATTGATGCCC 
               
               
                   
               
               
                 BATF_disc1 
                 GAAATGAGTCA 
                 TGACTCATTTC 
               
               
                   
               
               
                 DDIT3_DDIT3_f1_HocoMoco 
                 AAATGCAATCCCC 
                 GGGGATTGCATTT 
               
               
                   
               
               
                 CUX1_CUX2_2_SELEX|CUX1_CUX1_3_SELEX|CUX1_10|CU 
                 TAATCGATAA 
                 TTATCGATTA 
               
               
                 X2_2 
                   
                   
               
               
                   
               
               
                 ZBTB12_1 
                 CTAAGGTTCTAGATCAC 
                 GTGATCTAGAACCTTAG 
               
               
                   
               
               
                 ISX_pTH6551_PBM|ALX1_pTH6221_PBM 
                 AATTAATTAGT 
                 ACTAATTAATT 
               
               
                   
               
               
                 NFAT5_N FAT5_1_SELEX|N FAT5_1 
                 ATGGAAAATTACAG 
                 CTGTAATTTTCCAT 
               
               
                   
               
               
                 HNF4_known12 
                 CCCCCTGACCTTTGCCCT 
                 GGCAGAGGGCAAAGGT 
               
               
                   
                 CTGCC 
                 CAGGGGG 
               
               
                   
               
               
                 TBPL2_V$TATA_C_Transfac|TATA_known1 
                 CTTTTATAGA 
                 TCTATAAAAG 
               
               
                   
               
               
                 HOXA4_Zen2_Cell_FBgn0004054_B1H 
                 TAATTAAGA 
                 TCTTAATTA 
               
               
                   
               
               
                 GATA_disc6 
                 AGCTGACT 
                 AGTCAGCT 
               
               
                   
               
               
                 SRY_MA0084.1_SELEX|SRY_3 
                 ATTGTTTAC 
                 GTAAACAAT 
               
               
                   
               
               
                 ETV5_FEV_f1_HocoMoco 
                 CAGGAAATAA 
                 TTATTTCCTG 
               
               
                   
               
               
                 HOXC10_HOXD11_1_SELEX|HOXD11_2 
                 GTCGTAAAAA 
                 TTTTTACGAC 
               
               
                   
               
               
                 ZBTB7B_Zbtb7b_1054_PBM 
                 AGCCCCCCAA 
                 TTGGGGGGCT 
               
               
                   
               
               
                 ZFY_MA0146.2_ChIP-seq|ZFX_1 
                 CAGGCCTCGGCCCC 
                 GGGGCCGAGGCCTG 
               
               
                   
               
               
                 NR4A2_N R4A2_1_SELEX|NR4A_known2 
                 AGGTCAAACTGTGACCT 
                 AGGTCACAGTTTGACCT 
               
               
                   
               
               
                 GFI1B_MA0038.1_SELEX|GFI1_3 
                 CAAATCACTG 
                 CAGTGATTTG 
               
               
                   
               
               
                 ATF1_V$TAXCREB_01_Transfac|ATF3_known4 
                 GGGGGTTGACGCAGA 
                 TCTGCGTCAACCCCC 
               
               
                   
               
               
                 HOXB13_Hoxd13_2_SELEX|HOXB13_HOXD13_2_SELEX|H 
                 GCTCGTAAAAC 
                 GTTTTACGAGC 
               
               
                 OXB13_HOXA13_2_SELEX|HOXA13_3|HOXD13_3|HOXD1 
                   
                   
               
               
                 3_5 
                   
                   
               
               
                   
               
               
                 HOXB13_HOXB13_2_SELEX|HOXB13_HOXC13_2_SELEX|H 
                 GCTCGTAAAAA 
                 TTTTTACGAGC 
               
               
                 OXB13_3|HOXC13_3 
                   
                   
               
               
                   
               
               
                 MYOD1_MYOD1_f1_HocoMoco 
                 GACAGCTGC 
                 GCAGCTGTC 
               
               
                   
               
               
                 USF1_GM12878_USF1_HudsonAlpha_ChIP-seq 
                 CCCGCCACGTGACCC 
                 GGGTCACGTGGCGGG 
               
               
                   
               
               
                 PKNOX2_1 
                 AAGCACCTGTCAATAT 
                 ATATTGACAGGTGCTT 
               
               
                   
               
               
                 ENSG00000234254_TGIF1_f1_HocoMoco 
                 CAGGTGACACCTGACA 
                 TGTCAGGTGTCACCTG 
               
               
                   
               
               
                 EGR3_EGR1_f2_HocoMoco 
                 CCGCCCCCGCA 
                 TGCGGGGGCGG 
               
               
                   
               
               
                 IKZF1_IKZF1_f1_HocoMoco 
                 TCTCCCAA 
                 TTGGGAGA 
               
               
                   
               
               
                 MYBL1_V$MYB_Q6_Transfac 
                 GCCAGTTGAC 
                 GTCAACTGGC 
               
               
                   
               
               
                 TBX3_pTH9289_PBM|TBX3_pTH3998_PBM 
                 AAGGTGTCAA 
                 TTGACACCTT 
               
               
                   
               
               
                 PAX5_MA0239.1_B1H|OVOL1_MA0126.1_SELEX 
                 ACTGTTACT 
                 AGTAACAGT 
               
               
                   
               
               
                 SPZ1_V$SPZ1_01_Transfac|SPZ1_1 
                 GCAGGAGGGTATGGC 
                 GCCATACCCTCCTGC 
               
               
                   
               
               
                 PPARA_V$PPARG_01_Transfac 
                 CGGATGACCTTTGACCC 
                 TCAGGGGTCAAAGGTC 
               
               
                   
                 CTGA 
                 ATCCG 
               
               
                   
               
               
                 ZNF263_K562b_ZNF263_UCD_ChIP-seq 
                 CTCCTCCCCTCCCTCCTC 
                 GGGGAGGAGGGAGGG 
               
               
                   
                 CCC 
                 GAGGAG 
               
               
                   
               
               
                 KIAA0415_Fkh2_PBM|FOXD1_pTH2846_PBM|FOXJ3_Fkh1 
                 ATGTAAACAA 
                 TTGTTTACAT 
               
               
                 _PBM|FOXD1_pTH6641_PBM|FOXD1_pTH6108_PBM 
                   
                   
               
               
                   
               
               
                 RFX8_pTH9199_PBM|RFX8_pTH9385_PBM|RFX8_Rfx4_37 
                 CCATGGCAAC 
                 GTTGCCATGG 
               
               
                 61_PBM|MYC_disc4 
                   
                   
               
               
                   
               
               
                 OTX2_1 
                 GACAATTAATCCCTACA 
                 TGTAGGGATTAATTGTC 
               
               
                   
               
               
                 MAFK_MAFK_1_SELEX|MAF_known6 
                 AAATTTGCTGAC 
                 GTCAGCAAATTT 
               
               
                   
               
               
                 MYC_known6 
                 GCCACGTGAC 
                 GTCACGTGGC 
               
               
                   
               
               
                 ELF5_1 
                 AAGGAAGTA 
                 TACTTCCTT 
               
               
                   
               
               
                 SCRT2_CG12605_SANGER_10_FBgn0035481_B1H 
                 CAACAGGTG 
                 CACCTGTTG 
               
               
                   
               
               
                 BCL_disc7 
                 ACAGCTCCC 
                 GGGAGCTGT 
               
               
                   
               
               
                 HMGA1_2 
                 AATGCAATTTTTTGA 
                 TCAAAAAATTGCATT 
               
               
                   
               
               
                 BRCA1_GM12878_BRCA1_Stanford_ChIP-seq 
                 AAATCTCGCGAGAAC 
                 GTTCTCGCGAGATTT 
               
               
                   
               
               
                 TCF3_4 
                 CCACCTGCCGCAGG 
                 CCTGCGGCAGGTGG 
               
               
                   
               
               
                 RARG_RARG_4_SELEX|RARG_4 
                 GAGGTCAAAAGGTCAC 
                 GTGACCTTTTGACCTC 
               
               
                   
               
               
                 NR2F2_NR2F1_2_SELEX|HNF4_known24 
                 GAGGTCAAAAGGTCAA 
                 TTGACCTTTTGACCTC 
               
               
                   
               
               
                 IRX3_Ara_SOLEXA_FBgn0015904_B1H|IRX3_Mirr_SOLEXA 
                 ATAACA 
                 TGTTAT 
               
               
                 _FBgn0014343_B1H|IRX3_Caup_SOLEXA_FBgn0015919_B 
                   
                   
               
               
                 1H 
                   
                   
               
               
                   
               
               
                 ARNT2_ARNT_f1_HocoMoco|BHLHE40_pTH4330_PBM|ID 
                 GCACGTGA 
                 TCACGTGC 
               
               
                 4_pTH5068_PBM 
                   
                   
               
               
                   
               
               
                 SIN3A_disc4 
                 ACAGCTCCT 
                 AGGAGCTGT 
               
               
                   
               
               
                 ETS_disc9 
                 CGCCGCCCCCGC 
                 GCGGGGGCGGCG 
               
               
                   
               
               
                 SOX1_SOX2_4_SELEX|SOX2_5 
                 GAACAATAACATTGTTC 
                 GAACAATGTTATTGTTC 
               
               
                   
               
               
                 E2F2_E2F2_f1_HocoMoco|E2F_known21 
                 GGCGCGAAAC 
                 GTTTCGCGCC 
               
               
                   
               
               
                 CUX1_V$CDPCR3HD_01_Transfac|CUX1_5 
                 GATCGATCCC 
                 GGGATCGATC 
               
               
                   
               
               
                 HOXC10_HOXA10_1_SELEX|HOXA10_2 
                 ATTTTTACGACC 
                 GGTCGTAAAAAT 
               
               
                   
               
               
                 DUX4_1 
                 CACCGTTGATTGGGTCG 
                 CGACCCAATCAACGGTG 
               
               
                   
               
               
                 NR1H_2 
                 GGGTTACTGGCGGTCA 
                 TGACCGCCAGTAACCC 
               
               
                   
               
               
                 SPDEF_Spdef_0905_PBM 
                 ACATCCGGGT 
                 ACCCGGATGT 
               
               
                   
               
               
                 ATF3_known16 
                 ACGATGACGTCATCGA 
                 TCGATGACGTCATCGT 
               
               
                   
               
               
                 POU1F1_pTH4326_PBM 
                 ATTATTAATA 
                 TATTAATAAT 
               
               
                   
               
               
                 SIX2_pTH5690_PBM 
                 AGGGTATCA 
                 TGATACCCT 
               
               
                   
               
               
                 SP9_pTH0978_PBM 
                 CCCGCCCCC 
                 GGGGGCGGG 
               
               
                   
               
               
                 NKX2-6_tin_FlyReg_FBgn0004110_B1H 
                 GGCCACTTGAGA 
                 TCTCAAGTGGCC 
               
               
                   
               
               
                 E2F_disc8 
                 GCAGGCGCCGC 
                 GCGGCGCCTGC 
               
               
                   
               
               
                 TCF4_MA0522.1_ChIP-seq 
                 CACAGCTGCAG 
                 CTGCAGCTGTG 
               
               
                   
               
               
                 HOXB6_1 
                 AAGGTAATTACCAATA 
                 TATTGGTAATTACCTT 
               
               
                   
               
               
                 GATA2_HUVEC_GATA2_UCD_ChIP- 
                 ACAGATAAGAA 
                 TTCTTATCTGT 
               
               
                 seq|GATA2_MA0035.3_ChIP-seq|GATA_known15 
                   
                   
               
               
                   
               
               
                 FOSL2_MA0478.1_ChIP-seq|JUN_MA0490.1_ChIP-seq 
                 ATGAGTCATCC 
                 GGATGACTCAT 
               
               
                   
               
               
                 DMBX1_1 
                 TGAACCGGATTAATGAA 
                 TTCATTAATCCGGTTCA 
               
               
                   
               
               
                 MEOX2_MEOX2_1_SELEX|HOXC5_Hoxd3_1_SELEX|HOXB2 
                 AGTAATTAAC 
                 GTTAATTACT 
               
               
                 _HOXB2_1_SELEX|HOXB2_1|HOXD3_2|MEOX2_1 
                   
                   
               
               
                   
               
               
                 TP53_Tp53_3_SELEX|TP53_7 
                 AACATGCCCGGGCATGT 
                 GACATGCCCGGGCATGT 
               
               
                   
                 C 
                 T 
               
               
                   
               
               
                 HEY1_HEY2_2_SELEX|HEY1_HEY2_1_SELEX|HEY1_HEY1_1 
                 GACACGTGCC 
                 GGCACGTGTC 
               
               
                 SELEX|NPAS2_pTH5457_PBM|HEY1_known1|HEY2_1|HE 
                   
                   
               
               
                 Y2_2 
                   
                   
               
               
                   
               
               
                 RFX8_pTH9223_PBM|RFX8_pTH9226_PBM 
                 CCTTAGCAAC 
                 GTTGCTAAGG 
               
               
                   
               
               
                 ETV5_MA0028.1_SELEX|ETS_known7 
                 CTTCCGGCTC 
                 GAGCCGGAAG 
               
               
                   
               
               
                 GCM1_pTH8653_PBM 
                 ATGCGGGTAC 
                 GTACCCGCAT 
               
               
                   
               
               
                 ZNF263_MA0528.1_ChIP-seq 
                 GGAGGAGGAGGGGGA 
                 TCCTCCTCCCCCTCCTCC 
               
               
                   
                 GGAGGA 
                 TCC 
               
               
                   
               
               
                 BX088580.2_GSE11329_bioOct4_ChIP-seq 
                 TTTGCATAACAAAAA 
                 TTTTTGTTATGCAAA 
               
               
                   
               
               
                 SRF_HepG2_SRF_HudsonAlpha_ChIP-seq 
                 CATGCCCATATAAGGCA 
                 TTGCCTTATATGGGCAT 
               
               
                   
                 A 
                 G 
               
               
                   
               
               
                 TGIF1_Achi_Cell_FBgn0033749_B1H 
                 TGTCAAA 
                 TTTGACA 
               
               
                   
               
               
                 BX088580.2_MA0142.1_ChIP-seq|POU5F1_known3 
                 ATTTGCATAACAAAG 
                 CTTTGTTATGCAAAT 
               
               
                   
               
               
                 SRF_known7 
                 CCATATATGGGC 
                 GCCCATATATGG 
               
               
                   
               
               
                 TATA_disc7 
                 GAAGGAAGCGGAAGA 
                 TCTTCCGCTTCCTTC 
               
               
                   
               
               
                 MSX1_MA0188.1_B1H 
                 CCAATTA 
                 TAATTGG 
               
               
                   
               
               
                 NR2C2_pTH6174_PBM|RARG_pTH5430_PBM 
                 AGGTCACG 
                 CGTGACCT 
               
               
                   
               
               
                 OTP_OTX2_si_HocoMoco 
                 CTTTAATCCCTTAAC 
                 GTTAAGGGATTAAAG 
               
               
                   
               
               
                 TBX1_pTH3822_PBM 
                 AGGTGTGAAGA 
                 TCTTCACACCT 
               
               
                   
               
               
                 HDAC2_disc3 
                 GGTGCTGTCCGTGGTGC 
                 TCAGCACCACGGACAGC 
               
               
                   
                 TGA 
                 ACC 
               
               
                   
               
               
                 SREBF2_SRBP2_f1_HocoMoco 
                 CCTCACCCCACCC 
                 GGGTGGGGTGAGG 
               
               
                   
               
               
                 SREBP_known4 
                 GCGATCACCCCA 
                 TGGGGTGATCGC 
               
               
                   
               
               
                 ONECUT3_pTH8982_PBM 
                 AATCGATAA 
                 TTATCGATT 
               
               
                   
               
               
                 ZBTB42_ZNF238_2_SELEX|ZBTB18_3 
                 CATCCAGATGTTC 
                 GAACATCTGGATG 
               
               
                   
               
               
                 E2F4_E2F5_do_HocoMoco 
                 CGCGCCAAAC 
                 GTTTGGCGCG 
               
               
                   
               
               
                 TOPORS_V$LUN1_01_Transfac|TOPORS_1 
                 TCCCAAAGTAGCTGGGA 
                 TCCCAGCTACTTTGGGA 
               
               
                   
               
               
                 FOXJ3_pTH5634_PBM 
                 GTAAACAAC 
                 GTTGTTTAC 
               
               
                   
               
               
                 FOXD1_pTH6497_PBM|FOXD1_pTH3043_PBM|FOXD1_pT 
                 GTAAACAAA 
                 TTTGTTTAC 
               
               
                 H6591_PBM 
                   
                   
               
               
                   
               
               
                 RFX8_RFX3_2_SELEX|RFX3_3 
                 CGTTGCTAGGCAACC 
                 GGTTGCCTAGCAACG 
               
               
                   
               
               
                 NKX1-1_Nkx1-2_3214_PBM|ALX1_Rax_3443_PBM 
                 CCAATTAGC 
                 GCTAATTGG 
               
               
                   
               
               
                 HOXC5_V$HOXA3_01_Transfac|HOXA3_1 
                 CCAATTAGG 
                 CCTAATTGG 
               
               
                   
               
               
                 NR2E1_pTH5714_PBM 
                 AAATTGACCTCA 
                 TGAGGTCAATTT 
               
               
                   
               
               
                 FOSL1_MA0477.1_ChIP-seq 
                 CATGAGTCACC 
                 GGTGACTCATG 
               
               
                   
               
               
                 LBX2_MA0231.1_B1H 
                 TAACTA 
                 TAGTTA 
               
               
                   
               
               
                 AHR_VSAHR_01_Transfac 
                 CCCCGGGCTTGCGTGAG 
                 TCTCACGCAAGCCCGGG 
               
               
                   
                 A 
                 G 
               
               
                   
               
               
                 GMEB2_GMEB2_4_SELEX|ATF7_V$CREBP1_01_Transfac|Z 
                 TTACGTAA 
                 TTACGTAA 
               
               
                 HX1_pTH5688_PBM|ATF2_1|GMEB2_4 
                   
                   
               
               
                   
               
               
                 ZNF274_HepG2b_ZNF274_UCD_ChIP-seq 
                 GGTTTCTCTCCAGTA 
                 TACTGGAGAGAAACC 
               
               
                   
               
               
                 NFATC1_NFAC2_f1_HocoMoco 
                 AATTTTCCA 
                 TGGAAAATT 
               
               
                   
               
               
                 TCF4_TFE2_f2_HocoMoco 
                 ACCAGATGGTC 
                 GACCATCTGGT 
               
               
                   
               
               
                 ETV6_ETV6_1_SELEX|ETV6_1 
                 CACTTCCGCTTCCGG 
                 CCGGAAGCGGAAGTG 
               
               
                   
               
               
                 HOXC5_Hoxb7_3953_PBM|HOXC5_Hoxd8_2644_PBM 
                 GCCATTAA 
                 TTAATGGC 
               
               
                   
               
               
                 AR_A549_GR_HudsonAlpha_ChIP-seq 
                 GAACAGAATGTTCC 
                 GGAACATTCTGTTC 
               
               
                   
               
               
                 EBF1_disc1 
                 TCCCCGGGGA 
                 TCCCCGGGGA 
               
               
                   
               
               
                 SMAD4_SMAD4_si_HocoMoco 
                 GGCCAGACA 
                 TGTCTGGCC 
               
               
                   
               
               
                 ARNT2_pTH5064_PBM|BHLHE40_HepG2_BHLHE40_Hudso 
                 GCACGTGACC 
                 GGTCACGTGC 
               
               
                 nAlpha_ChIP-seq 
                   
                   
               
               
                   
               
               
                 EGR3_pTH9317_PBM|EGR3_Zif268_PBM 
                 CGCCCACG 
                 CGTGGGCG 
               
               
                   
               
               
                 RFX8_V$RFX1_01_Transfac|RFX5_known 1 
                 TAGTAGCCTGGCAACAA 
                 TTGTTGCCAGGCTACTA 
               
               
                   
               
               
                 GATA2_Mv75_ChIP-seq 
                 AGATATTATC 
                 GATAATATCT 
               
               
                   
               
               
                 VDR_4 
                 GGGTCAACGAGTTCA 
                 TGAACTCGTTGACCC 
               
               
                   
               
               
                 NR4A2_pTH3467_PBM|NR2F2_Mv102_ChIP-seq 
                 AAAGGTCA 
                 TGACCTTT 
               
               
                   
               
               
                 XBP1_pTH2852_PBM 
                 ACACGTCATC 
                 GATGACGTGT 
               
               
                   
               
               
                 SOX2_SOX21_4_SELEX|SRY_SRY_4_SELEX|SOX21_5|SRY_8 
                 TGAATAACATTCA 
                 TGAATGTTATTCA 
               
               
                   
               
               
                 FOXD1_GSE15244_FoxA1_ChIP-seq 
                 AAAGCAAACA 
                 TGTTTGCTTT 
               
               
                   
               
               
                 HOXC5_Ftz_Cell_FBgn0001077_B1H 
                 GTTAATGA 
                 TCATTAAC 
               
               
                   
               
               
                 GATA2_GATA5_f1_HocoMoco 
                 ATCTAAGTTATCTCTTA 
                 TAAGAGATAACTTAGAT 
               
               
                   
               
               
                 E4F1_1 
                 GCTACGTCAC 
                 GTGACGTAGC 
               
               
                   
               
               
                 POU3F3_MA0453.1_B1H 
                 CTAATTTGCATA 
                 TATGCAAATTAG 
               
               
                   
               
               
                 YY2_V$YY1_01_Transfac 
                 GATCTCCATTTTTGGAC 
                 GTCCAAAAATGGAGATC 
               
               
                   
               
               
                 NR3C1_disc5|FOXA_disc3 
                 CCTGCTGA 
                 TCAGCAGG 
               
               
                   
               
               
                 PAX9_V$PAX5_02_Transfac|PAX5_known2 
                 AAACAGATACCTGAAGC 
                 TGTATGGTCACGCTTCA 
               
               
                   
                 GTGACCATACA 
                 GGTATCTGTTT 
               
               
                   
               
               
                 ZEB1_V$AREB6_01_Transfac|ZEB1_known1 
                 ACACAGGTAAGTA 
                 TACTTACCTGTGT 
               
               
                   
               
               
                 FOX06_V$FOXO4_01_Transfac|FOXO4_1 
                 ATAAACAAGCC 
                 GGCTTGTTTAT 
               
               
                   
               
               
                 SOX9_SOX10_4_SELEX|SOX9_Sox10_3_SELEX|SOX10_6|S 
                 ATGAATTGCAGTCAT 
                 ATGACTGCAATTCAT 
               
               
                 OX10_10 
                   
                   
               
               
                   
               
               
                 ZNF683_HeLa-53_PRDM1_Stanford_ChIP- 
                 AGAAAGTGAAAGTGA 
                 TCACTTTCACTTTCT 
               
               
                 seq|PRDM1_PRDM1_1_SELEX|PRDM1_MA0508.1_ChIP- 
                   
                   
               
               
                 seq|PRDM1_known2 
                   
                   
               
               
                   
               
               
                 MEOX2_MEOX2_3_SELEX|MEOX2_3 
                 CTAATCATCATTAA 
                 TTAATGATGATTAG 
               
               
                   
               
               
                 MYB_5 
                 CAACGGCC 
                 GGCCGTTG 
               
               
                   
               
               
                 CTCF_disc4 
                 CACTAGATGGCAGC 
                 GCTGCCATCTAGTG 
               
               
                   
               
               
                 THRB_THRB_1_SELEX|THRB_1 
                 GTGACCTTATAAGGTCA 
                 GTGACCTTATAAGGTCA 
               
               
                   
                 C 
                 C 
               
               
                   
               
               
                 NFYA_MA0060.2_ChIP-seq 
                 AGAGTGCTGATTGGTCC 
                 TGGACCAATCAGCACTC 
               
               
                   
                 A 
                 T 
               
               
                   
               
               
                 PAX9_PAX5_f1_HocoMoco 
                 GAGGGCAGTGAAGCGT 
                 GTCACGCTTCACTGCCC 
               
               
                   
                 GAC 
                 TC 
               
               
                   
               
               
                 TCF7L2_known6 
                 ATTTCCTTTGATCTATA 
                 TATAGATCAAAGGAAAT 
               
               
                   
               
               
                 NFE2L2_1 
                 ACCGGAAGAG 
                 CTCTTCCGGT 
               
               
                   
               
               
                 TCF4_V$E47_02_Transfac 
                 ATTAACAGGTGTTCAC 
                 GTGAACACCTGTTAAT 
               
               
                   
               
               
                 VDR_VDR_1_SELEX|VDR_5 
                 GAGTTCATTGAGTTCA 
                 TGAACTCAATGAACTC 
               
               
                   
               
               
                 MYBL2_MYBL2_4_SELEX|MYBL2_4 
                 AACCGTTAAACGGTC 
                 GACCGTTTAACGGTT 
               
               
                   
               
               
                 MEF2_disc3|AP1_known5 
                 ATGAGTCAG 
                 CTGACTCAT 
               
               
                   
               
               
                 MYBL1_1 
                 AAATTAACGGTTTTCAA 
                 TTGAAAACCGTTAATTT 
               
               
                   
               
               
                 RORB_pTH6589_PBM 
                 ACTGACCTCG 
                 CGAGGTCAGT 
               
               
                   
               
               
                 POU3F3_POU2F1_2_SELEX|POU2F2_known16 
                 CATGAATATTCATA 
                 TATGAATATTCATG 
               
               
                   
               
               
                 FOXD1_FOXL1_2_SELEX|FOXL1_5 
                 TGTAAATAAACAA 
                 TTGTTTATTTACA 
               
               
                   
               
               
                 HDAC2_disc5 
                 AAAGTCCAG 
                 CTGGACTTT 
               
               
                   
               
               
                 ZNF143_known1 
                 GATTTCCCATAATGCCTT 
                 GCAAGGCATTATGGGA 
               
               
                   
                 GC 
                 AATC 
               
               
                   
               
               
                 HSF1_V$HSF1_01_Transfac|HSF2_V$HSF2_01_Transfac|H 
                 AGAATGTTCG 
                 CGAACATTCT 
               
               
                 SF_known1 
                   
                   
               
               
                   
               
               
                 LM02_V$LMO2COM_02_Transfac|LMO2_2 
                 CAGATAGGG 
                 CCCTATCTG 
               
               
                   
               
               
                 RREB1_MA0073.1_SELEX 
                 CCCCAAACCACCCCCCC 
                 GGGGGGGGGGTGGTTT 
               
               
                   
                 CCC 
                 GGGG 
               
               
                   
               
               
                 RREB1_2 
                 CCCCAAACCACCCCCCC 
                 TGGGGGGGGGTGGTTT 
               
               
                   
                 CCA 
                 GGGG 
               
               
                   
               
               
                 EGR3_pTH3091_PBM 
                 CGCCCACGCA 
                 TGCGTGGGCG 
               
               
                   
               
               
                 SOX9_SOX10_2_SELEX|SOX10_4 
                 AACAATGTTCAGTGTT 
                 AACACTGAACATTGTT 
               
               
                   
               
               
                 FOXD1_V$HFH8_01_Transfac|FOXF1_1 
                 CATATAAACAATG 
                 CATTGTTTATATG 
               
               
                   
               
               
                 HMGA2_pTH8216_PBM 
                 CCGGAAAAA 
                 TTTTTCCGG 
               
               
                   
               
               
                 FOXO6_FOXO3_si_HocoMoco 
                 AGGTAAACAAACA 
                 TGTTTGTTTACCT 
               
               
                   
               
               
                 NKX1-2_1 
                 GTGCACTAATTAGTGCA 
                 TGCACTAATTAGTGCAC 
               
               
                   
               
               
                 SMAD_2 
                 CTGTCTGGCTA 
                 TAGCCAGACAG 
               
               
                   
               
               
                 TCF7L2_Tcf7_0950_PBM 
                 AACATCAAA 
                 TTTGATGTT 
               
               
                   
               
               
                 FOXA_known4 
                 GACTAAGCAAACAATGA 
                 TTCATTGTTTGCTTAGTC 
               
               
                   
                 A 
                   
               
               
                   
               
               
                 MYOD1_nau_SANGER_5_FBgn0002922_B1H 
                 AACAGCTGACGC 
                 GCGTCAGCTGTT 
               
               
                   
               
               
                 IRX3_IRX5_1_SELEX|IRX3_IRX2_1_SELEX|IRX2_2|IRX5_2 
                 CATGTCATGTAA 
                 TTACATGACATG 
               
               
                   
               
               
                 TCF3_1 
                 ACGGCAGGTGTCCCC 
                 GGGGACACCTGCCGT 
               
               
                   
               
               
                 YY1_disc2 
                 AAACATGGCG 
                 CGCCATGTTT 
               
               
                   
               
               
                 NFATC1_NFAC1_do_HocoMoco 
                 ATGGAAATTTCCA 
                 TGGAAATTTCCAT 
               
               
                   
               
               
                 ARNT_MA0004.1_SELEX|MYC_known10|ARNT_3 
                 CACGTG 
                 CACGTG 
               
               
                   
               
               
                 MAFB_Mafb_1_SELEX|MAF_disc2|MAF_known10 
                 AAAATGCTGACT 
                 AGTCAGCATTTT 
               
               
                   
               
               
                 TBPL2_Tbp_pr781_PBM 
                 ATATAAA 
                 TTTATAT 
               
               
                   
               
               
                 E2F_known23 
                 ATAAGGGCGCGCGAT 
                 ATCGCGCGCCCTTAT 
               
               
                   
               
               
                 GATA2_pTH1049_PBM 
                 CAGATAAGG 
                 CCTTATCTG 
               
               
                   
               
               
                 BBX_Bbx_3753_PBM 
                 TCAATGAA 
                 TTCATTGA 
               
               
                   
               
               
                 SRF_SRF_do_HocoMoco 
                 ATGCCCATATATGGA 
                 TCCATATATGGGCAT 
               
               
                   
               
               
                 PAX8_1 
                 ACAGTCATGCGTGAGTT 
                 TAACTCACGCATGACTG 
               
               
                   
                 A 
                 T 
               
               
                   
               
               
                 CACD_1 
                 CAACCCCTGGGTGTGG 
                 CCACACCCAGGGGTTG 
               
               
                   
               
               
                 ELF3_1 
                 TACAAGGAAGTAA 
                 TTACTTCCTTGTA 
               
               
                   
               
               
                 LHX1_1 
                 CATTATTAATTAATTCG 
                 CGAATTAATTAATAATG 
               
               
                   
               
               
                 SRF_SRF_2_SELEX|SRF_known10 
                 TGACCATATATGGTCA 
                 TGACCATATATGGTCA 
               
               
                   
               
               
                 MEF2B_V$MEF2_01_Transfac|MEF2_known1 
                 AGAGTTATTTTTAGAG 
                 CTCTAAAAATAACTCT 
               
               
                   
               
               
                 ZNF143_V$STAF_01_Transfac 
                 GGCGCAATGCATTGTGG 
                 TTTACCCACAATGCATT 
               
               
                   
                 GTAAA 
                 GCGCC 
               
               
                   
               
               
                 TRIM28_disc2 
                 AGAGAAACC 
                 GGTTTCTCT 
               
               
                   
               
               
                 PITX2_Ptx1_SOLEXA_FBgn0020912_B1H 
                 GGATTAAC 
                 GTTAATCC 
               
               
                   
               
               
                 ZNF202_pTH3075_PBM 
                 AAGGGGGGCA 
                 TGCCCCCCTT 
               
               
                   
               
               
                 RHOXF1_2 
                 AGGACGCTGTAAAGGG 
                 TCCCTTTACAGCGTCCT 
               
               
                   
                 A 
                   
               
               
                   
               
               
                 TFAP2A_V$AP2ALPHA_01_Transfac|TFAP2A_V$AP2GAM 
                 CCCCCGGGC 
                 GCCCGGGGG 
               
               
                 MA_01_Transfac|TFAP2_known2|TFAP2_known3|TFAP2_ 
                   
                   
               
               
                 known8 
                   
                   
               
               
                   
               
               
                 NKX2-5_MA0264.1_PBM 
                 ACCACTTGAAA 
                 TTTCAAGTGGT 
               
               
                   
               
               
                 EGR3_H1-hESC_EGR1_HudsonAlpha_ChIP-seq 
                 CCCCGCCCCCGCACC 
                 GGTGCGGGGGCGGGG 
               
               
                   
               
               
                 BARHL2_BARHL2_1_SELEX|BARHL2_2 
                 ACCGTTTAAC 
                 GTTAAACGGT 
               
               
                   
               
               
                 FOXP3_1 
                 GAAATGTTGTTTCAGAC 
                 GTCTGAAACAACATTTC 
               
               
                   
               
               
                 NFKB2_N FKB2_f1_HocoMoco 
                 AGGGAGATTCC 
                 GGAATCTCCCT 
               
               
                   
               
               
                 ELF1_HepG2_ELF1_HudsonAlpha_ChIP-seq 
                 CCACTTCCGGGTTC 
                 GAACCCGGAAGTGG 
               
               
                   
               
               
                 HMX1_Hmx2_3424_PBM|TLX3_pTH6482_PBM 
                 AACCAATTAA 
                 TTAATTGGTT 
               
               
                   
               
               
                 HOXA7_3 
                 GTAGTAATTAATGGAA 
                 TTCCATTAATTACTAC 
               
               
                   
               
               
                 ZNF784_ZNF784_1_SELEX|ZNF784_1 
                 AGGTAGGTAC 
                 GTACCTACCT 
               
               
                   
               
               
                 TCF4_TCF3_1_SELEX|TCF3_7 
                 AACACCTGCT 
                 AGCAGGTGTT 
               
               
                   
               
               
                 SP9_MA0516.1_ChIP-seq|SP1_disc3 
                 GCCCCGCCCCCTCCC 
                 GGGAGGGGGCGGGGC 
               
               
                   
               
               
                 HES4_pTH5259_PBM 
                 GCACGTGTCGTTA 
                 TAACGACACGTGC 
               
               
                   
               
               
                 NR2F2_pTH2193_PBM 
                 AAAGGTCAAG 
                 CTTGACCTTT 
               
               
                   
               
               
                 ZNF219_ZN219_f1_HocoMoco 
                 GAGGGGGGCGGA 
                 TCCGCCCCCCTC 
               
               
                   
               
               
                 FOXO6_FOXO4_3_SELEX|FOXO6_FOXO1_3_SELEX|FOXO1 
                 CGTGTGGGGAAA 
                 TTTCCCCACACG 
               
               
                 _5|FOXO4_5 
                   
                   
               
               
                   
               
               
                 CR936877.3_RXRB_1_SELEX|CR936877.3_RXRA_3_SELEX| 
                 GGGGTCAAAGGTCA 
                 TGACCTTTGACCCC 
               
               
                 CR936877.3_RXRG_3_SELEX|CR936877.3_RXRA_1_SELEX| 
                   
                   
               
               
                 CR936877.3_RXRG_1_SELEX|CR936877.3_Rxrb_1_SELEX|C 
                   
                   
               
               
                 R936877.3_Rxra_1_SELEX|HNF4G_HNF4A_4_SELEX|HNF4 
                   
                   
               
               
                 _known19|RXRA_known10|RXRA_known12|RXRB_1|RXR 
                   
                   
               
               
                 G_1|RXRG_3|RXRA_known14|RXRB_2 
                   
                   
               
               
                   
               
               
                 FOXP4_MA0481.1_ChIP-seq 
                 CAAAAGTAAACAAAG 
                 CTTTGTTTACTTTTG 
               
               
                   
               
               
                 THAP1_MA0597.1_ChIP-seq 
                 CTGCCCGCA 
                 TGCGGGCAG 
               
               
                   
               
               
                 TFAP2_known5 
                 CCGCCCCCAGGCC 
                 GGCCTGGGGGCGG 
               
               
                   
               
               
                 EP300_disc2 
                 AAAGATGATGCAATA 
                 TATTGCATCATCTTT 
               
               
                   
               
               
                 MYC_disc6 
                 AAGTCACGT 
                 ACGTGACTT 
               
               
                   
               
               
                 TATA_disc5|NRF1_disc2 
                 AAGCGGAA 
                 TTCCGCTT 
               
               
                   
               
               
                 FOXO6_FOXO4_f1_HocoMoco 
                 AATAAACAA 
                 TTGTTTATT 
               
               
                   
               
               
                 POU6F2_POU6F2_2_SELEX|POU6F2_2 
                 TTAATGAGCTAATTAA 
                 TTAATTAGCTCATTAA 
               
               
                   
               
               
                 NKX6- 
                 TAATTAAA 
                 TTTAATTA 
               
               
                 3_Hgtx_Cell_FBgn0040318_B1H|POU3F3_MA0197.1_B1H 
                   
                   
               
               
                 |TLX3_C15_SOLEXA_FBgn0004863_B1H|SHOX_Otp_Cell_F 
                   
                   
               
               
                 Bgn0015524_B1H|NKX1- 
                   
                   
               
               
                 1_Slou_Cell_FBgn0002941_B1H|HOXC5_MA0094.2_B1H|L 
                   
                   
               
               
                 MX1A_CG4328_SOLEXA_FBgn0036274_B1H|RAX2_Repo_ 
                   
                   
               
               
                 Cell_FBgn0011701_B1H|LMX1A_CG32105_SOLEXA_FBgn0 
                   
                   
               
               
                 052105_B1H|HOXC5_Ubx_Cell_FBgn0003944_B1H|NKX6- 
                   
                   
               
               
                 3_Hgtx_SOLEXA_FBgn0040318_B1H 
                   
                   
               
               
                   
               
               
                 TAL1_known4 
                 AGCAGCTGGA 
                 TCCAGCTGCT 
               
               
                   
               
               
                 NR3C1_known11 
                 CTGTTCTTTC 
                 GAAAGAACAG 
               
               
                   
               
               
                 AR_Ar_1_SELEX|NR3C1_known17 
                 CGGTACACCGTGTACCC 
                 GGGTACACGGTGTACC 
               
               
                   
                   
                 G 
               
               
                   
               
               
                 MNX1_Hlxb9_3422_PBM 
                 AAGCAATTAG 
                 CTAATTGCTT 
               
               
                   
               
               
                 MITF_HLH30_PBM 
                 TCACGTGA 
                 TCACGTGA 
               
               
                   
               
               
                 NR2F2_NR2F6_1_SELEX|NR2F2_Nr2f6_1_SELEX|NR2F6_1| 
                 GAGGTCAAAAGGTCA 
                 TGACCTTTTGACCTC 
               
               
                 NR2F6_4 
                   
                   
               
               
                   
               
               
                 STAT_disc7 
                 CTCTCCCTTTCCC 
                 GGGAAAGGGAGAG 
               
               
                   
               
               
                 NKX2-3_2|NKX2-3_3 
                 ACCACTTGAA 
                 TTCAAGTGGT 
               
               
                   
               
               
                 NR2F2_NR2F1_1_SELEX|HNF4_known23 
                 GAGGTCAAAGGTCAA 
                 TTGACCTTTGACCTC 
               
               
                   
               
               
                 SIX5_Mv121_ChIP-seq|SMARC_disc2 
                 ACTACAACTC 
                 GAGTTGTAGT 
               
               
                   
               
               
                 ARID3C_Arid3a_3875_PBM 
                 CAATTAAAA 
                 TTTTAATTG 
               
               
                   
               
               
                 HNF4_known15 
                 CTTCAGGGGTCAATTGA 
                 TCAATTGACCCCTGAAG 
               
               
                   
               
               
                 NKX2-5_Vnd_Cell_FBgn0003986_B1H|NKX2- 
                 CACTTGAAA 
                 TTTCAAGTG 
               
               
                 5_MA0253.1_B1H 
                   
                   
               
               
                   
               
               
                 ZIC4_pTH2818_PBM 
                 CCGGGGGGTC 
                 GACCCCCCGG 
               
               
                   
               
               
                 EVX1_1 
                 AGAACTAATTAGTGGAC 
                 GTCCACTAATTAGTTCT 
               
               
                   
               
               
                 NKX2-5_Mw138_ChIP-seq 
                 AATCGATA 
                 TATCGATT 
               
               
                   
               
               
                 SOX9_SOX9_4_SELEX|SOX9_6 
                 ATGAATGTGCAGTCAT 
                 ATGACTGCACATTCAT 
               
               
                   
               
               
                 VDR_VDR_f2_HocoMoco 
                 GGGTCAACGAGTTCAC 
                 GTGAACTCGTTGACCC 
               
               
                   
               
               
                 FOSL1_FOSL1_f2_HocoMoco 
                 AACGTGACTCAGCA 
                 TGCTGAGTCACGTT 
               
               
                   
               
               
                 ZSCAN4_1 
                 ACGTATGTGCACATCTG 
                 CAGATGTGCACATACGT 
               
               
                   
               
               
                 GFI1B_MA0483.1_ChIP-seq 
                 AAATCACAGCA 
                 TGCTGTGATTT 
               
               
                   
               
               
                 SOX12_5ox12_3957_PBM 
                 AAGAACAATG 
                 CATTGTTCTT 
               
               
                   
               
               
                 ZBTB14_1 
                 AAGCGCGCCCCCG 
                 CGGGGGCGCGCTT 
               
               
                   
               
               
                 PRDM 16_V$EVI1_02_Transfac|RUNX1_3 
                 AGACAAGATAA 
                 TTATCTTGTCT 
               
               
                   
               
               
                 NFATC1_NFATC1_3_SELEX|NFATC1_3 
                 TTTTCCATGGAAAA 
                 TTTTCCATGGAAAA 
               
               
                   
               
               
                 FOXD1_FOXJ3_3_SELEX|FOXD1_Foxj3_4_SELEX|FOXD1_F 
                 GTAAACATAAACA 
                 TGTTTATGTTTAC 
               
               
                 OXJ2_3_SELEX|FOXJ2_5|FOXJ3_4|FOXJ3_8 
                   
                   
               
               
                   
               
               
                 ZNF410_Zfp410_3034_PBM 
                 CCATCCCA 
                 TGGGATGG 
               
               
                   
               
               
                 SPIC_Sfpi1_PBM 
                 AAGGGGAAGT 
                 ACTTCCCCTT 
               
               
                   
               
               
                 DBX1_1 
                 TAATTAATTAATAATTA 
                 TAATTATTAATTAATTA 
               
               
                   
               
               
                 USF1_MA0093.2_ChIP- 
                 GCCACGTGACC 
                 GGTCACGTGGC 
               
               
                 seq|USF1_HepG2_USF1_HudsonAlpha_ChIP-seq 
                   
                   
               
               
                   
               
               
                 NKX3-1_MA0124.1_SELEX|NKX3-1_2 
                 ATACTTA 
                 TAAGTAT 
               
               
                   
               
               
                 NR2C2_Mv98_ChIP-seq 
                 TCAGAGGTCA 
                 TGACCTCTGA 
               
               
                   
               
               
                 IRX3_Caup_Cell_FBgn0015919_B1H 
                 CAATAACA 
                 TGTTATTG 
               
               
                   
               
               
                 LIN54_pTH9366_PBM 
                 AATTTAAATT 
                 AATTTAAATT 
               
               
                   
               
               
                 NR2E1::NFIC_1 
                 TGGCACCATGCCAA 
                 TTGGCATGGTGCCA 
               
               
                   
               
               
                 FOXD1_MA0031.1_SELEX|FOXD1_2 
                 ATGTTTAC 
                 GTAAACAT 
               
               
                   
               
               
                 PRRX1_1 
                 AGTAGTTAATTAGTTAC 
                 GTAACTAATTAACTACT 
               
               
                   
               
               
                 FOXO6_V$FOXO3_01_Transfac|FOXO3_1 
                 TATGTAAACAACAA 
                 TTGTTGTTTACATA 
               
               
                   
               
               
                 TP73_GSE18650_TP73_ChIP-seq 
                 CATGTCGGGACATGC 
                 GCATGTCCCGACATG 
               
               
                   
               
               
                 HNF1A_V$HNF1_C_Transfac|HNF1_2 
                 AGTTAATTATTAACCAA 
                 TTGGTTAATAATTAACT 
               
               
                   
               
               
                 SOX9_Sox10_2_SELEX|SOX9_SOX10_3_SELEX|SOX10_5|S 
                 ATCAATTGCAGTGAT 
                 ATCACTGCAATTGAT 
               
               
                 OX10_9 
                   
                   
               
               
                   
               
               
                 FOXD1_HepG2_FOXA1_HudsonAlpha_ChIP-seq 
                 CTAAGTAAACA 
                 TGTTTACTTAG 
               
               
                   
               
               
                 HOXC5_HX68_do_HocoMoco 
                 GCATTAATCAA 
                 TTGATTAATGC 
               
               
                   
               
               
                 POU4F1_PO4F2_si_HocoMoco 
                 CAGCTCATTAATA 
                 TATTAATGAGCTG 
               
               
                   
               
               
                 ATF3_disc3 
                 AACCCGGCC 
                 GGCCGGGTT 
               
               
                   
               
               
                 LHX3_3 
                 ATTATTTAATTAATTAC 
                 GTAATTAATTAAATAAT 
               
               
                   
               
               
                 ZNF274_HeLa-53_ZNF274_UCD_ChIP-seq 
                 TTCATACTGGAGAGAAA 
                 TTTCTCTCCAGTATGAA 
               
               
                   
               
               
                 SMAD1_MA0535.1_ChIP-chip 
                 CAGGCGCCGCCGCCG 
                 CGGCGGCGGCGCCTG 
               
               
                   
               
               
                 CEBPA_V$CEBP_C12_Transfac|CEBPB_known4 
                 ACATTGCATAATTA 
                 TAATTATGCAATGT 
               
               
                   
               
               
                 SOX17_GSE19026_Sox17_XENcells_ChIP-seq 
                 AAACAATGGAA 
                 TTCCATTGTTT 
               
               
                   
               
               
                 NFYB_MA0502.1_ChIP-seq 
                 AAATGGACCAATCAG 
                 CTGATTGGTCCATTT 
               
               
                   
               
               
                 NKX6-1_2 
                 CGAAGTAATTAATTTTC 
                 GAAAATTAATTACTTCG 
               
               
                   
               
               
                 SMAD2_5mad3_3805_PBM 
                 ATTCCAGACA 
                 TGTCTGGAAT 
               
               
                   
               
               
                 GCM1_pTH9283_PBM 
                 ACCCGCATGA 
                 TCATGCGGGT 
               
               
                   
               
               
                 CEBPB_known6 
                 AAATTTGGCAAA 
                 TTTGCCAAATTT 
               
               
                   
               
               
                 CEBPA_2 
                 ATTGCGAAA 
                 TTTCGCAAT 
               
               
                   
               
               
                 FOX_1 
                 GATTGTTTATTTA 
                 TAAATAAACAATC 
               
               
                   
               
               
                 SRF_Mcm1_PBM 
                 CGAATAGGGA 
                 TCCCTATTCG 
               
               
                   
               
               
                 T_byn_FlyReg_FBgn0011723_B1H 
                 AAGTGCGA 
                 TCGCACTT 
               
               
                   
               
               
                 CTCF_disc10 
                 ACCTGCAGG 
                 CCTGCAGGT 
               
               
                   
               
               
                 TFAP2_known6 
                 ACCGCCTGAGGGGAT 
                 ATCCCCTCAGGCGGT 
               
               
                   
               
               
                 HOXC11_1 
                 CTATTTTACGACTTTA 
                 TAAAGTCGTAAAATAG 
               
               
                   
               
               
                 ZNF524_ZNF524_1_SELEX|ZNF524_1 
                 ACCCTCGAACCC 
                 GGGTTCGAGGGT 
               
               
                   
               
               
                 NKX2-5_pTH2842_PBM 
                 AAGCACTTAA 
                 TTAAGTGCTT 
               
               
                   
               
               
                 BCL_discl 
                 CACTTCCGGC 
                 GCCGGAAGTG 
               
               
                   
               
               
                 LHX8_Lhx8_3_SELEX|LHX8_4 
                 TAATTGCAATCA 
                 TGATTGCAATTA 
               
               
                   
               
               
                 PAX2_PAX2_1_SELEX|PAX2_4 
                 CGTCACGCTTGACTGCT 
                 GAGCAGTCAAGCGTGA 
               
               
                   
                 C 
                 CG 
               
               
                   
               
               
                 LHX9_ap_FlyReg_FBgn0000099_B1H 
                 TAATAA 
                 TTATTA 
               
               
                   
               
               
                 KLF4_Klf12_1_SELEX|KLF12_2 
                 AATAAGGGCGTGGTC 
                 GACCACGCCCTTATT 
               
               
                   
               
               
                 LHX8_LHX6_2_SELEX|LHX6_4 
                 TAATTAGCGCTAATTA 
                 TAATTAGCGCTAATTA 
               
               
                   
               
               
                 MYC_disc10 
                 CCCCCCGCCTC 
                 GAGGCGGGGGG 
               
               
                   
               
               
                 RORB_RORA_2_SELEX|RORA_7 
                 TAACTAGGTTAGTAGGT 
                 TGACCTACTAACCTAGT 
               
               
                   
                 CA 
                 TA 
               
               
                   
               
               
                 HDX_1 
                 AAGGCGAAATCATCGCA 
                 TGCGATGATTTCGCCTT 
               
               
                   
               
               
                 TCF7L2_LEF1_f1_HocoMoco 
                 ATCAAAG 
                 CTTTGAT 
               
               
                   
               
               
                 HOXC9_Abd-B_FlyReg_FBgn0000015_B1H 
                 TCATAAAA 
                 TTTTATGA 
               
               
                   
               
               
                 PKNOX2_Hth_Cell_FBgn0001235_B1H|TGIF1_Vis_Cell_FBg 
                 TGACA 
                 TGTCA 
               
               
                 n0033748_B1H 
                   
                   
               
               
                   
               
               
                 BX088580.2_POU3F4_1_SELEX|POU3F4_POU2F3_1_SELEX 
                 ATTTGCATA 
                 TATGCAAAT 
               
               
                 |BX088580.2_POU5F1P1_1_SELEX|POU3F3_PO2F1_f1_Ho 
                   
                   
               
               
                 coMoco|POU2F2_P02F2_si_HocoMoco|POU2F3_2|POU3 
                   
                   
               
               
                 F4_2|POU5F1_known4|POU2F2_5 
                   
                   
               
               
                   
               
               
                 VDR_Vdr_1_SELEX|VDR_6 
                 GAGTTCATCGGGTTCA 
                 TGAACCCGATGAACTC 
               
               
                   
               
               
                 TFAP2A_Tcfap2e_3713_PBM 
                 CCTCAGGCGA 
                 TCGCCTGAGG 
               
               
                   
               
               
                 CEBPG_CEBPG_si_HocoMoco 
                 ATTTTGCAATCTG 
                 CAGATTGCAAAAT 
               
               
                   
               
               
                 MYC_MCF-7_CMYC_UT-A_ChIP-seq 
                 ACCACGTG 
                 CACGTGGT 
               
               
                   
               
               
                 JUN_pTH5462_PBM|AP1_known8 
                 ATGACTCAA 
                 TTGAGTCAT 
               
               
                   
               
               
                 ZNF354C_MA0130.1_SELEX|ZNF354C_1 
                 ATCCAC 
                 GTGGAT 
               
               
                   
               
               
                 HOXC5_I$FTZ_01_Transfac 
                 AAAGCAATTAAG 
                 CTTAATTGCTTT 
               
               
                   
               
               
                 SHOX_Phox2b_3948_PBM|LHX9_Ap_Cell_FBgn0000099_B 
                 GCTAATTA 
                 TAATTAGC 
               
               
                 1H|LBX2_Lbl_Cell_FBgn0008651_B1H|SHOX_Otp_3496_P 
                   
                   
               
               
                 BM|ALX1_Prrx1_3442_PBM|SHOX_Phox2a_3947_PBM|G 
                   
                   
               
               
                 BX2_Gbx1_2883_PBM|ALX1_Rx_Cell_FBgn0020617_B1H| 
                   
                   
               
               
                 EN2_En2_0952_PBM|HOXD1_Hoxd1_3448_PBM 
                   
                   
               
               
                   
               
               
                 JUN_pTH8562_PBM|ATF3_JDP2_3_SELEX|JUN_JUN_f1_H 
                 ATGACTCAT 
                 ATGAGTCAT 
               
               
                 ocoMoco|ATF3_JDP2_1_SELEX|ATF3_Jdp2_1_SELEX|JDP2 
                   
                   
               
               
                 _2|JDP2_4|JDP2_6 
                   
                   
               
               
                   
               
               
                 GCM_1 
                 AATGCGGGTGTG 
                 CACACCCGCATT 
               
               
                   
               
               
                 FOXD1_V$FOXJ2_01_Transfac|FOXJ2_1 
                 TTATAAATAAACATTCA 
                 TTGAATGTTTATTTATAA 
               
               
                   
                 A 
                   
               
               
                   
               
               
                 SPIC_Spic_PBM 
                 AAGCGGAAG 
                 CTTCCGCTT 
               
               
                   
               
               
                 TBPL2_TBP_f1_HocoMoco 
                 GAATTTATACC 
                 GGTATAAATTC 
               
               
                   
               
               
                 FIGLA_pTH5105_PBM 
                 ACCACCTGG 
                 CCAGGTGGT 
               
               
                   
               
               
                 ZSCAN4_2 
                 TACATGTGCACATAAAA 
                 TTTTATGTGCACATGTA 
               
               
                   
               
               
                 ZNF143_MA0088.1_COMPILED 
                 GATTTCCCATCATGCCTT 
                 GCAAGGCATGATGGGA 
               
               
                   
                 GC 
                 AATC 
               
               
                   
               
               
                 ZNF333_ZN333_f1_HocoMoco 
                 CGATAATGA 
                 TCATTATCG 
               
               
                   
               
               
                 SHOX_V$S8_01_Transfac 
                 AGGTTAATTGAGTAAA 
                 TTTACTCAATTAACCT 
               
               
                   
               
               
                 KLF4_pTH9072_PBM 
                 CCACGCCCA 
                 TGGGCGTGG 
               
               
                   
               
               
                 ZFY_pTH2933_PBM 
                 TAGGCCACA 
                 TGTGGCCTA 
               
               
                   
               
               
                 RHOXF1_RHOXF1_3_SELEX|RHOXF1_RHOXF1_1_SELEX|RH 
                 GGATAATCC 
                 GGATTATCC 
               
               
                 OXF1_3|RHOXF1_5 
                   
                   
               
               
                   
               
               
                 DPRX_DPRX_2_SELEX|DPRX_2 
                 GGGATAATCCC 
                 GGGATTATCCC 
               
               
                   
               
               
                 ENSG00000250542_pTH5459_PBM 
                 AAACGTAG 
                 CTACGTTT 
               
               
                   
               
               
                 SOX13_pTH3862_PBM 
                 ATTGTTTTG 
                 CAAAACAAT 
               
               
                   
               
               
                 SOX15_Sox15_3457_PBM 
                 ATTGTTTTA 
                 TAAAACAAT 
               
               
                   
               
               
                 THAP1_K562_THAP1_HudsonAlpha_ChIP-seq 
                 CGCCATCTTGGATGAGG 
                 CTGCCCTCATCCAAGAT 
               
               
                   
                 GCAG 
                 GGCG 
               
               
                   
               
               
                 HSF1_HSF1_f2_HocoMoco 
                 AGAAAGTTCTAGAA 
                 TTCTAGAACTTTCT 
               
               
                   
               
               
                 LHX9_LHX2_f1_HocoMoco 
                 CACTTTTAATTAG 
                 CTAATTAAAAGTG 
               
               
                   
               
               
                 MEF2B_MA0497.1_ChIP-seq 
                 ATGCTAAAAATAGAA 
                 TTCTATTTTTAGCAT 
               
               
                   
               
               
                 ATF3_known13 
                 CGATGACGTCA 
                 TGACGTCATCG 
               
               
                   
               
               
                 ELF3_Elf5_1_SELEX|ELF3_ELF5_1_SELEX|ELF3_ELF5_2_SEL 
                 ACCCGGAAGTA 
                 TACTTCCGGGT 
               
               
                 EX|ELF5_2|ELF5_3|ELF5_4 
                   
                   
               
               
                   
               
               
                 HOXC10_MA0485.1_ChIP-seq 
                 GGCCATAAATCAC 
                 GTGATTTATGGCC 
               
               
                   
               
               
                 ELF1_K562_ELF1_HudsonAlpha_ChIP-seq 
                 ACCCGGAAGTG 
                 CACTTCCGGGT 
               
               
                   
               
               
                 GBX2_GBX2_2_SELEX|GBX2_3 
                 TAATTGGCCAATTA 
                 TAATTGGCCAATTA 
               
               
                   
               
               
                 MYCN_MYCN_si_HocoMoco|MXI1_Mv94_ChIP-seq 
                 CCACGTGG 
                 CCACGTGG 
               
               
                   
               
               
                 HSF_known2 
                 GAAACCTCTGGAA 
                 TTCCAGAGGTTTC 
               
               
                   
               
               
                 SOX30_Sox30_2781_PBM 
                 ATTGTTCTGC 
                 GCAGAACAAT 
               
               
                   
               
               
                 SRF_YMR043W_831_DeBoer11 
                 CATTTCCGAATTGGGAA 
                 TGTTTCCCAATTCGGAA 
               
               
                   
                 ACA 
                 ATG 
               
               
                   
               
               
                 NKX2-5_3 
                 TCAAGTGGGA 
                 TCCCACTTGA 
               
               
                   
               
               
                 SNAI2_SNAI2_1_SELEX|SNAI2_1 
                 AACAGGTGT 
                 ACACCTGTT 
               
               
                   
               
               
                 NFKB1_V$NFKB_Q6_Transfac|NFKB_known4 
                 AGGGGAATTTCCCC 
                 GGGGAAATTCCCCT 
               
               
                   
               
               
                 DRGX_Otx1_2_SELEX|DRGX_OTX1_2_SELEX|OTX1_3|OTX 
                 CGGATTAA 
                 TTAATCCG 
               
               
                 1_5 
                   
                   
               
               
                   
               
               
                 FOXD1_FOXC2_f1_HocoMoco 
                 GTTTGTTTTGCCAGA 
                 TCTGGCAAAACAAAC 
               
               
                   
               
               
                 ETV5_Elk3_1_SELEX|ETV5_GABPA_1_SELEX|ETV5_ELK3_1 
                 ACCGGAAGTA 
                 TACTTCCGGT 
               
               
                 _SELEX|ETV5_ELK1_2_SELEX|ETV5_ELK1_1_SELEX|ETV5_E 
                   
                   
               
               
                 TV4_1_SELEX|ETV5_ETV1_1_SELEX|ETS1_V$CETS1P54_01 
                   
                   
               
               
                 Transfac|ETS_known3|ETS_known11|ETS_known12|ELK 
                   
                   
               
               
                 3_1|ETV1_1|ETV4_2|ELK3_2|ETS_known18 
                   
                   
               
               
                   
               
               
                 LHX4_1 
                 CAAAGCTAATTAGTTTA 
                 TAAACTAATTAGCTTTG 
               
               
                   
               
               
                 POU4F3_1 
                 AGTTATTAATGAGGTC 
                 GACCTCATTAATAACT 
               
               
                   
               
               
                 ETS1_ETS1_3_SELEX|ENSG00000235187_ETV3_1_SELEX|E 
                 ACCGGAAGTG 
                 CACTTCCGGT 
               
               
                 TV5_ERG_1_SELEX|ETV5_ELK4_1_SELEX|ETV5_ETV5_1_SE 
                   
                   
               
               
                 LEX|EN5G00000235187_ERF_1_SELEX|ETV5_ELK1_4_SELE 
                   
                   
               
               
                 X|ETV5_FLI1_3_SELEX|ETV5_ERG_3_SELEX|ETS1_ETS1_1_ 
                   
                   
               
               
                 SELEX|ELF1_ELF1_g_HocoMoco|ETV5_FEV_1_SELEX|ETV 
                   
                   
               
               
                 5_FLI1_1_SELEX|ETS_disc2|EGR1_disc2|ELK4_2|ERF_1|ER 
                   
                   
               
               
                 G_1|ERG_3|ETS_known14|ETS_known16|ETV3_1|ETV5_1 
                   
                   
               
               
                 |FEV_2|FLI1_1|FLI1_3 
                   
                   
               
               
                   
               
               
                 AP1_known10 
                 TGACTCA 
                 TGAGTCA 
               
               
                   
               
               
                 TFCP2_TFCP2_f1_HocoMoco 
                 GCCTGAACTGGCCAGA 
                 TCTGGCCAGTTCAGGC 
               
               
                   
               
               
                 DBX2_Dbx2_3487_PBM|DLX1_Dlx5_3419_PBM 
                 GCAATTA 
                 TAATTGC 
               
               
                   
               
               
                 BHLHE40_BHE41_f1_HocoMoco 
                 ACCGGGTCACGTGCAG 
                 GCTTCTGCACGTGACCC 
               
               
                   
                 AAGC 
                 GGT 
               
               
                   
               
               
                 EHF_1 
                 AGGACCCGGAAGTAA 
                 TTACTTCCGGGTCCT 
               
               
                   
               
               
                 NHLH2_HLH4C_SANGER_5_FBgn0011277_B1H 
                 GGCACCAGCTGCGCC 
                 GGCGCAGCTGGTGCC 
               
               
                   
               
               
                 HOXB2_HXA1_f1_HocoMoco 
                 CATCCATCAA 
                 TTGATGGATG 
               
               
                   
               
               
                 BX088580.2_POU5F1P1_2_SELEX|POU3F4_POU2F3_2_SEL 
                 ATGAATATGCAA 
                 TTGCATATTCAT 
               
               
                 EX|POU2F3_3|POU5F1_known5 
                   
                   
               
               
                   
               
               
                 E2F_known15 
                 CGCGCC 
                 GGCGCG 
               
               
                   
               
               
                 STAT1_Mv124_ChIP-seq 
                 TTCCCGGAAA 
                 TTTCCGGGAA 
               
               
                   
               
               
                 BRCA1_MA0133.1_SELEX|BRCA1_known2 
                 ACAACAC 
                 GTGTTGT 
               
               
                   
               
               
                 ETS_1 
                 AACCACTTCCTG 
                 CAGGAAGTGGTT 
               
               
                   
               
               
                 IRF5_IRF5_1_SELEX|IRF_known15 
                 AGTTTCGGTTTCGG 
                 CCGAAACCGAAACT 
               
               
                   
               
               
                 IRF8_IRF8_2_SELEX|IRF_known20 
                 AGTTTCGGTTTCGA 
                 TCGAAACCGAAACT 
               
               
                   
               
               
                 CDX2_V$CDXA_02_Transfac 
                 ATTAATA 
                 TATTAAT 
               
               
                   
               
               
                 TAL2_TAL1_f2_HocoMoco 
                 AACAGATGGTCGCCCAA 
                 TCCAGTGGTTGGGCGAC 
               
               
                   
                 CCACTGGA 
                 CATCTGTT 
               
               
                   
               
               
                 FOXA_disc2 
                 AATATTGACA 
                 TGTCAATATT 
               
               
                   
               
               
                 SP2_disc3 
                 AAGGGGCGGG 
                 CCCGCCCCTT 
               
               
                   
               
               
                 MAX_NB4_MAX_Stanford_ChIP-seq 
                 CCACGTGATCC 
                 GGATCACGTGG 
               
               
                   
               
               
                 ATF4_1 
                 CATTGCGTCAGG 
                 CCTGACGCAATG 
               
               
                   
               
               
                 SP9_V$SP1_C16_Transfac|SP1_known2 
                 GGCCCCGCCCCCC 
                 GGGGGGCGGGGCC 
               
               
                   
               
               
                 HOXB13_HOXA13_4_SELEX|HOXA13_5 
                 TCTCGTAAAAA 
                 TTTTTACGAGA 
               
               
                   
               
               
                 GATA2_srp_SANGER_5_FBgn0003507_B1H 
                 CCTTATCA 
                 TGATAAGG 
               
               
                   
               
               
                 NEUROG1_tap_da_SANGER_5_2_FBgn0015550_B1H|TCF4 
                 CCAGATGTCA 
                 TGACATCTGG 
               
               
                 _tap_da_SANGER_5_2_FBgn0000413_B1H 
                   
                   
               
               
                   
               
               
                 FOXO6_V$FOXO4_02_Transfac|FOXO4_2 
                 AACGTAAACAACAT 
                 ATGTTGTTTACGTT 
               
               
                   
               
               
                 GATA_known17 
                 ATCTTCTTATCAGTTTA 
                 TAAACTGATAAGAAGAT 
               
               
                   
               
               
                 MYBL2_MYBL2_2_SELEX|MYBL2_2 
                 ACCGTTAAAACCGTTA 
                 TAACGGTTTTAACGGT 
               
               
                   
               
               
                 WT1_WT1_f1_HocoMoco 
                 CCCCCGCCCCCGC 
                 GCGGGGGCGGGGG 
               
               
                   
               
               
                 SOX13_1 
                 AAATTATTGTTCTTAA 
                 TTAAGAACAATAATTT 
               
               
                   
               
               
                 SNAI2_SNAI2_f1_HocoMoco 
                 CACCTGG 
                 CCAGGTG 
               
               
                   
               
               
                 TBX3_TBX2_1_SELEX|MGA_MGA_3_SELEX|MGA_3|TBX2_ 
                 GGTGTGAAATTTCACAC 
                 GGTGTGAAATTTCACAC 
               
               
                 1 
                 C 
                 C 
               
               
                   
               
               
                 E2F8_E2F8_1_SELEX|E2F8_1 
                 TTTCCCGCCAAA 
                 TTTGGCGGGAAA 
               
               
                   
               
               
                 TCF4_nau_da_SANGER_5_FBgn0000413_B1H|MYOD1_na 
                 CACCTGTC 
                 GACAGGTG 
               
               
                 u_da_SANGER_5_FBgn0002922_B1H 
                   
                   
               
               
                   
               
               
                 CEBPZ_CEBPZ_si_HocoMoco 
                 AGCCAATCAGC 
                 GCTGATTGGCT 
               
               
                   
               
               
                 ATF1_pTH5080_PBM 
                 GTGACGTAA 
                 TTACGTCAC 
               
               
                   
               
               
                 ATF1_V$CREB_C14_Transfac|ATF3_known7 
                 GGTGACGTAACC 
                 GGTTACGTCACC 
               
               
                   
               
               
                 RAD21_disc8 
                 CACCAGGGGGCAGC 
                 GCTGCCCCCTGGTG 
               
               
                   
               
               
                 OBOX2_1|OBOX3_1 
                 ATAGTTAATCCCCCTCA 
                 TGAGGGGGATTAACTAT 
               
               
                   
               
               
                 SRY_V$SRY_02_Transfac|SRY_2 
                 GTAAACAATAGA 
                 TCTATTGTTTAC 
               
               
                   
               
               
                 ZBTB33_disc3 
                 AACTCTCGCG 
                 CGCGAGAGTT 
               
               
                   
               
               
                 HOXD12_HOXD12_2_SELEX|HOXD12_3 
                 AGTCGTAAAAA 
                 TTTTTACGACT 
               
               
                   
               
               
                 BACH1_Mv47_ChIP-seq 
                 AAATGCTGA 
                 TCAGCATTT 
               
               
                   
               
               
                 EN2_1 
                 TGCACTAATTAGTGGAA 
                 TTCCACTAATTAGTGCA 
               
               
                   
               
               
                 SOX3_2 
                 AATCAATAACATTGATC 
                 GATCAATGTTATTGATT 
               
               
                   
               
               
                 SRY_SRY_f1_HocoMoco 
                 AAAACAAAA 
                 TTTTGTTTT 
               
               
                   
               
               
                 ZNF281_1 
                 GGGGGGGGGGGGGGA 
                 TCCCCCCCCCCCCCC 
               
               
                   
               
               
                 SP2_disc2 
                 ATTGGCCAGCGTGGCTG 
                 TGACTGACAGCCACGCT 
               
               
                   
                 TCAGTCA 
                 GGCCAAT 
               
               
                   
               
               
                 SP9_SP8_1_SELEX|SP8_1 
                 AGTGGGCGTGGC 
                 GCCACGCCCACT 
               
               
                   
               
               
                 SPDEF_Spdef_PBM 
                 AAACCGGATA 
                 TATCCGGTTT 
               
               
                   
               
               
                 ESRRA_disc3 
                 AAGGTGACCT 
                 AGGTCACCTT 
               
               
                   
               
               
                 CDX2_MA0216.2_ChIP-chip 
                 GGCCATAAAAA 
                 TTTTTATGGCC 
               
               
                   
               
               
                 SCRT2_SCRT1_1_SELEX|SCRT1_1 
                 AACCACCTGTTGCTC 
                 GAGCAACAGGTGGTT 
               
               
                   
               
               
                 NANOGP1_pTH5685_PBM 
                 AGCGATTAA 
                 TTAATCGCT 
               
               
                   
               
               
                 HNF4G_Hnf4a_2640_PBM 
                 AGGGTTCAAA 
                 TTTGAACCCT 
               
               
                   
               
               
                 ESRRG_ESRRB_1_SELEX|ESRRB_2 
                 TATGACCTTGA 
                 TCAAGGTCATA 
               
               
                   
               
               
                 PAX6_2 
                 CTGACCTGGAACTC 
                 GAGTTCCAGGTCAG 
               
               
                   
               
               
                 ESR2_Mv66_ChIP-seq 
                 AGGTCAGGGTGACCTG 
                 TCCAGGTCACCCTGACC 
               
               
                   
                 GA 
                 T 
               
               
                   
               
               
                 SRF_pTH5539_PBM 
                 CCAAATCGGG 
                 CCCGATTTGG 
               
               
                   
               
               
                 SP9_SP3_f1_HocoMoco 
                 CCCCGGCCCCGCCCCCC 
                 GGGGGGGGGCGGGGC 
               
               
                   
                 CCC 
                 CGGGG 
               
               
                   
               
               
                 TFAP2A_Tcfap2a_1_SELEX|TFAP2A_TFAP2A_1_SELEX|TFA 
                 TGCCCCCGGGCA 
                 TGCCCGGGGGCA 
               
               
                 P2_known11|TFAP2_known20 
                   
                   
               
               
                   
               
               
                 ETV5_ETV4_f1_HocoMoco 
                 ACTTCCTG 
                 CAGGAAGT 
               
               
                   
               
               
                 TFAP2_known7 
                 ACCGCCTCAGGCGGT 
                 ACCGCCTGAGGCGGT 
               
               
                   
               
               
                 ETS_2 
                 ACTTCCTC 
                 GAGGAAGT 
               
               
                   
               
               
                 NR2E3_NR2E3_f1_HocoMoco 
                 AAAGTCAAAAGTCA 
                 TGACTTTTGACTTT 
               
               
                   
               
               
                 PAX6_PAX6_f1_HocoMoco 
                 TCAAGCGTGAA 
                 TTCACGCTTGA 
               
               
                   
               
               
                 TCF7L1_1|TCF7_1 
                 TATAGATCAAAGGAAAA 
                 TTTTCCTTTGATCTATA 
               
               
                   
               
               
                 JUN_H1-hESC_CJUN_Stanford_ChIP-seq 
                 CATTCCTGAGGGATGAC 
                 TAAGTCATCCCTCAGGA 
               
               
                   
                 TTA 
                 ATG 
               
               
                   
               
               
                 DMRTA2_pTH10777_PBM 
                 ACTGTATCAA 
                 TTGATACAGT 
               
               
                   
               
               
                 NR2C2_NR2C1_si_HocoMoco 
                 CTGACCTCTGGCC 
                 GGCCAGAGGTCAG 
               
               
                   
               
               
                 RORB_RORG_f1_HocoMoco 
                 AAAAGTAGGTCAG 
                 CTGACCTACTTTT 
               
               
                   
               
               
                 ESRRG_ESRRA_4_SELEX 
                 TTCAAGGTCAA 
                 TTGACCTTGAA 
               
               
                   
               
               
                 TFAP4_pTH5067_PBM 
                 ATCAGCTGG 
                 CCAGCTGAT 
               
               
                   
               
               
                 GMEB1_pTH8671_PBM 
                 TACGTCA 
                 TGACGTA 
               
               
                   
               
               
                 NFE2L1_1 
                 CTTCCAAAATGAC 
                 GTCATTTTGGAAG 
               
               
                   
               
               
                 RELA_V$NFKAPPAB65_01_Transfac|RELA_MA0107.1_SELE 
                 GGAAATTCCC 
                 GGGAATTTCC 
               
               
                 X|NFKB_disc1|NFKB_known2|NFKB_known3|NFKB_know 
                   
                   
               
               
                 n7|NFKB_known9 
                   
                   
               
               
                   
               
               
                 ELF3_ELF5_f1_HocoMoco 
                 ATAAGGAAGTA 
                 TACTTCCTTAT 
               
               
                   
               
               
                 TFAP4_HLH11_PBM 
                 ATCAGCTGA 
                 TCAGCTGAT 
               
               
                   
               
               
                 POU4F1_POU4F1_1_SELEX|POU4F1_1 
                 ATGAATAATTAATG 
                 CATTAATTATTCAT 
               
               
                   
               
               
                 FEV_1 
                 ATTTCCTG 
                 CAGGAAAT 
               
               
                   
               
               
                 XBP1_XBP1_2_SELEX|XBP1_4 
                 AATGCCACGTCATC 
                 GATGACGTGGCATT 
               
               
                   
               
               
                 POU3F3_PO3F2_si_HocoMoco 
                 ATTATTTATG 
                 CATAAATAAT 
               
               
                   
               
               
                 OTX_1 
                 AATTAATC 
                 GATTAATT 
               
               
                   
               
               
                 SOX9_MA0077.1_SELEX|SOX9_SOX9_1_SELEX|SOX9_2|SO 
                 CCATTGTTC 
                 GAACAATGG 
               
               
                 X9_3 
                   
                   
               
               
                   
               
               
                 SOX3_3 
                 CATGAATACCATTCATC 
                 GATGAATGGTATTCATG 
               
               
                   
               
               
                 NKX1-1_1 
                 TCCCACTAATTAGCGCA 
                 TGCGCTAATTAGTGGGA 
               
               
                   
               
               
                 NKX6-2_1 
                 GAAATAATTACC 
                 GGTAATTATTTC 
               
               
                   
               
               
                 KLF4_KLF8_f1_HocoMoco 
                 CACCCCCTG 
                 CAGGGGGTG 
               
               
                   
               
               
                 ZNF423_2 
                 GCACCCCTGGGTGCC 
                 GGCACCCAGGGGTGC 
               
               
                   
               
               
                 GATA2_Mw144_ChIP-seq 
                 AGATGCTTATC 
                 GATAAGCATCT 
               
               
                   
               
               
                 NFKB1_V$NFKAPPAB50_01_Transfac|NFKB_known1 
                 GGGAATCCCC 
                 GGGGATTCCC 
               
               
                   
               
               
                 CTCF_HEK293_CTCF_UW_ChIP- 
                 GGCGCCCCCTGGTGGCC 
                 TGGCCACCAGGGGGCG 
               
               
                 seq|CTCF_K562_CTCF_Broad_ChIP- 
                 A 
                 CC 
               
               
                 seq|CTCF_HBM EC_CTCF_UW_ChIP-seq 
                   
                   
               
               
                   
               
               
                 ALX1_VSX2_si_HocoMoco 
                 TAATTAGCTAA 
                 TTAGCTAATTA 
               
               
                   
               
               
                 VAX1_1 
                 ACGTTAATTAACCCAG 
                 CTGGGTTAATTAACGT 
               
               
                   
               
               
                 ETV5_Etv1_PBM|ETV5_Etv4_PBM|ETV5_Gm5454_PBM 
                 ACTTCCGGTC 
                 GACCGGAAGT 
               
               
                   
               
               
                 AP1_disc3 
                 ATGAGTCACC 
                 GGTGACTCAT 
               
               
                   
               
               
                 HOXA4_pTH5479_PBM 
                 CTTAATTACC 
                 GGTAATTAAG 
               
               
                   
               
               
                 EGR3_MA0472.1_ChIP-seq 
                 CCCCCGCCCACGCAC 
                 GTGCGTGGGCGGGGG 
               
               
                   
               
               
                 NKX2-2_2 
                 AATTTTCAAGTGGTTAA 
                 TTAACCACTTGAAAATT 
               
               
                   
               
               
                 TCF4_pTH3866_PBM|TCF12_HTF4_f1_HocoMoco 
                 ACACCTGCT 
                 AGCAGGTGT 
               
               
                   
               
               
                 SPDEF_SPDEF_2_SELEX|SPDEF_3 
                 ATAATCCGGGACCAC 
                 GTGGTCCCGGATTAT 
               
               
                   
               
               
                 DLX4_1 
                 GTCGGTAATTATAGCGA 
                 TCGCTATAATTACCGAC 
               
               
                   
               
               
                 AIRE_1 
                 ATTTAACCATTATAACCA 
                 TTATTAATTGGTTATAAT 
               
               
                   
                 ATTAATAA 
                 GGTTAAAT 
               
               
                   
               
               
                 NFAT5_NFAT5_f1_HocoMoco 
                 CATGGAGTTTTCCAC 
                 GTGGAAAACTCCATG 
               
               
                   
               
               
                 POU3F3_1 
                 AAAATATGCATAATAAA 
                 TTTATTATGCATATTTT 
               
               
                   
               
               
                 MESP2_MESP1_1_SELEX|MESP1_1 
                 AACACCTGTG 
                 CACAGGTGTT 
               
               
                   
               
               
                 SIN3A_disc6 
                 CCGCTCAGCCGC 
                 GCGGCTGAGCGG 
               
               
                   
               
               
                 NKX2-8_2 
                 CCACTTGAG 
                 CTCAAGTGG 
               
               
                   
               
               
                 ESRRA_disc4 
                 CAGGGTCAGAGCGG 
                 CCGCTCTGACCCTG 
               
               
                   
               
               
                 RARG_Rarb_2_SELEX|RARB_2 
                 AAAGGTCACCAGAGGT 
                 TGACCTCTGGTGACCTT 
               
               
                   
                 CA 
                 T 
               
               
                   
               
               
                 HSF2_pTH9010_PBM 
                 ATATAGAACATTC 
                 GAATGTTCTATAT 
               
               
                   
               
               
                 GATA2_K562b_GATA2_UCD_ChIP-seq 
                 CCTTATCTGCCCCCCCCA 
                 TGGGGGGGGCAGATAA 
               
               
                   
                   
                 GG 
               
               
                   
               
               
                 ZNF148_GSE11329_zfp281_ChIP- 
                 CCCCTCCCCCACCCC 
                 GGGGTGGGGGAGGGG 
               
               
                 seq|ZNF148_ZN148_si_HocoMoco 
                   
                   
               
               
                   
               
               
                 CEBPA_CEBPD_f1_HocoMoco 
                 AATTGTGCAAT 
                 ATTGCACAATT 
               
               
                   
               
               
                 HOMEZ_HOMEZ_LSELEX|HOMEZ_2 
                 AAAACGATTATA 
                 TATAATCGTTTT 
               
               
                   
               
               
                 ISL2_ISL1_f1_HocoMoco 
                 CATTAAC 
                 GTTAATG 
               
               
                   
               
               
                 ATF7_ATF7_1_SELEX|ATF7_1 
                 CGATGACGTCATCG 
                 CGATGACGTCATCG 
               
               
                   
               
               
                 HOXA4_HOXA2_1_SELEX|EMX2_pTH5677_PBM|HOXA2_2 
                 CCTAATTACC 
                 GGTAATTAGG 
               
               
                   
               
               
                 CR936877.3_Rxra_2_SELEX|RXRA_known15 
                 GGGTCATGACCC 
                 GGGTCATGACCC 
               
               
                   
               
               
                 STAT_known15 
                 GACTTTTCTGGGA 
                 TCCCAGAAAAGTC 
               
               
                   
               
               
                 GATA2_PBDE_GATA1_UCD_ChIP-seq 
                 CTGGGGGGGGCAGATA 
                 CTTATCTGCCCCCCCCAG 
               
               
                   
                 AG 
                   
               
               
                   
               
               
                 GATA2_K562_GATA2_HudsonAlpha_ChIP-seq 
                 CTGGTGGGGGCAGATA 
                 CTTATCTGCCCCCACCA 
               
               
                   
                 AG 
                 G 
               
               
                   
               
               
                 TRIM28_disc1 
                 TGAGTCATCA 
                 TGATGACTCA 
               
               
                   
               
               
                 EWSR1::FLI1_1 
                 CCTTCCTTCCTTCCTTCC 
                 GGAAGGAAGGAAGGAA 
               
               
                   
                   
                 GG 
               
               
                   
               
               
                 ARNT2_BMAL1_f1_HocoMoco 
                 GGGTCACGTGTCCA 
                 TGGACACGTGACCC 
               
               
                   
               
               
                 SP9_SP1_1_SELEX|SP1_known8 
                 ACCCCGCCCCC 
                 GGGGGCGGGGT 
               
               
                   
               
               
                 PAX9_Mv109_ChIP-seq 
                 AGCGTGACCG 
                 CGGTCACGCT 
               
               
                   
               
               
                 STAT4_STAT4_si_HocoMoco 
                 CTTTTCTGGGAAA 
                 TTTCCCAGAAAAG 
               
               
                   
               
               
                 CEBPB_known7 
                 AAATTGTGCAAT 
                 ATTGCACAATTT 
               
               
                   
               
               
                 ARNT2_tgo_sima_SANGER_5_FBgn0015014_B1H 
                 GTACGTGAC 
                 GTCACGTAC 
               
               
                   
               
               
                 ENSG00000250096_RUNX2_1_SELEX|ENSG00000250096_ 
                 TAACCGCAAACCGCAA 
                 TTGCGGTTTGCGGTTA 
               
               
                 RUNX3_1_SELEX|RUNX2_4|RUNX3_1 
                   
                   
               
               
                   
               
               
                 POU3F1_1|POU3F4_1 
                 AATTAATTAATTAATTC 
                 GAATTAATTAATTAATT 
               
               
                   
               
               
                 EP300_disc9 
                 CCGCTCCCAGCGGCTGC 
                 GCAGCCGCTGGGAGCG 
               
               
                   
                   
                 G 
               
               
                   
               
               
                 HOXC5_Mw154_ChIP-seq 
                 CATCAATC 
                 GATTGATG 
               
               
                   
               
               
                 TFAP4_crp_SANGER_10_FBgn0001994_B1H 
                 ATCAGCTGGTC 
                 GACCAGCTGAT 
               
               
                   
               
               
                 CR936877.3_HepG2_RXRA_HudsonAlpha_ChIP-seq 
                 CCCTGACCTTTGCCC 
                 GGGCAAAGGTCAGGG 
               
               
                   
               
               
                 PLAG1_PLAG1_si_HocoMoco 
                 AGAGGGGGCCCTA 
                 TAGGGCCCCCTCT 
               
               
                   
               
               
                 NR2C2_K562b_TR4_UCD_ChIP-seq 
                 AGTACTTCCGGGTCA 
                 TGACCCGGAAGTACT 
               
               
                   
               
               
                 PAX5_pTH10794_PBM 
                 ACGCGTGACG 
                 CGTCACGCGT 
               
               
                   
               
               
                 E2F_disc6 
                 AGATTTGAAT 
                 ATTCAAATCT 
               
               
                   
               
               
                 RUNX1_V$AML1_01_Transfac|RUNX2_1|RUNX1_7 
                 ACCACA 
                 TGTGGT 
               
               
                   
               
               
                 SOX8_1 
                 TAAAGAACAATAGATAA 
                 TTATCTATTGTTCTTTA 
               
               
                   
               
               
                 AP1_disc7 
                 CATGACTCAGAC 
                 GTCTGAGTCATG 
               
               
                   
               
               
                 SOX1_MA0143.3_ChIP-seq|SOX11_Sox4_PBM 
                 AACAAAGG 
                 CCTTTGTT 
               
               
                   
               
               
                 JUN _JUND_f1_HocoMoco|JUN_HeLa- 
                 GATGACTCATC 
                 GATGAGTCATC 
               
               
                 S3_CJUN_Stanford_ChIP- 
                   
                   
               
               
                 seq|JUN_K562_CJUN_Stanford_ChIP-seq 
                   
                   
               
               
                   
               
               
                 PAX3_1 
                 AAATTTCGTCACGGTTA 
                 ACCTTAACCGTGACGAA 
               
               
                   
                 AGGT 
                 ATT 
               
               
                   
               
               
                 RFX8_RFX5_2_SELEX|RFX8_RFX5_3_SELEX|RFX5_known9 
                 CGTTACCATGGCAACG 
                 CGTTGCCATGGTAACG 
               
               
                   
               
               
                 BATF_GM12878_BATF_HudsonAlpha_ChIP-seq 
                 TCTCGATATGACTCA 
                 TGAGTCATATCGAGA 
               
               
                   
               
               
                 NR1H_1 
                 TGACCGCCAGTGACCCC 
                 TGGGGTCACTGGCGGTC 
               
               
                   
                 A 
                 A 
               
               
                   
               
               
                 RFX8_MA0365.1_PBM,|RFX8_YLR176C_496_DeBoer11 
                 GGTTGCCA 
                 TGGCAACC 
               
               
                   
               
               
                 PTF1A_1 
                 GCTGTGGTTTTCCC 
                 GGGAAAACCACAGC 
               
               
                   
               
               
                 ZNF423_V$ROAZ_01_Transfac|ZNF423_1 
                 GCACCCAAGGGTGC 
                 GCACCCTTGGGTGC 
               
               
                   
               
               
                 TFAP2A_TFAP2A_3_SELEX|TFAP2_known13 
                 TGCCCCCGGGGCA 
                 TGCCCCGGGGGCA 
               
               
                   
               
               
                 TFAP2A_HeLa-S3_AP2GAMMA_UCD_ChIP-seq 
                 AGCCTCAGGGCATGG 
                 CCATGCCCTGAGGCT 
               
               
                   
               
               
                 NR2F2_COT1_f1_HocoMoco 
                 GGTCAAAGGTCA 
                 TGACCTTTGACC 
               
               
                   
               
               
                 AHR_1 
                 CCCCCGGCTAGCGTGAG 
                 TCTCACGCTAGCCGGGG 
               
               
                   
                 A 
                 G 
               
               
                   
               
               
                 ARID5A_pTH4426_PBM 
                 CAATATCG 
                 CGATATTG 
               
               
                   
               
               
                 RFX8_pTH3516_PBM 
                 CCATAGCAAC 
                 GTTGCTATGG 
               
               
                   
               
               
                 FOXD1_V$XFD3_01_Transfac 
                 TGAGTAAACAAAAA 
                 TTTTTGTTTACTCA 
               
               
                   
               
               
                 GATA_disc3 
                 GCAGGAAATGA 
                 TCATTTCCTGC 
               
               
                   
               
               
                 RXRA_known3 
                 AGAGTTCA 
                 TGAACTCT 
               
               
                   
               
               
                 YBX1_pTH8991_PBM 
                 TAGGATAGA 
                 TCTATCCTA 
               
               
                   
               
               
                 TATA_disc8 
                 CGGAAGTCGC 
                 GCGACTTCCG 
               
               
                   
               
               
                 SHOX2_1 
                 CACAATTAATTAACGCG 
                 CGCGTTAATTAATTGTG 
               
               
                   
               
               
                 DRGX_Otx1_1_SELEX|DRGX_OTX1_1_SELEX|OTP_OTX2_1 
                 GTTAATCCGATTAAC 
                 GTTAATCGGATTAAC 
               
               
                 _SELEX|OTX1_2|OTX2_2|OTX1_4 
                   
                   
               
               
                   
               
               
                 SP1_known3 
                 AGCCTTGGGGAGGG 
                 CCCTCCCCAAGGCT 
               
               
                   
               
               
                 DLX1_Dlx4_3488_PBM 
                 ATAATTGC 
                 GCAATTAT 
               
               
                   
               
               
                 DMBX1_Pax7_3783_PBM 
                 ATAATTGG 
                 CCAATTAT 
               
               
                   
               
               
                 POU3F2_1 
                 GCCATCCAAAATGAAC 
                 GTTCATTTTGGATGGC 
               
               
                   
               
               
                 CEBPA_MA0102.3_ChIP-seq 
                 ATTGCACAATA 
                 TATTGTGCAAT 
               
               
                   
               
               
                 MEIS1::HOXA9_1 
                 TCGTAAAACTGTCA 
                 TGACAGTTTTACGA 
               
               
                   
               
               
                 MYBL1_MYBL1_4_SELEX|MYBL1_5 
                 GGCCGTTATAACCGTTA 
                 TAACGGTTATAACGGCC 
               
               
                   
               
               
                 MSX2_2 
                 AAATTAATTGGTTTTG 
                 CAAAACCAATTAATTT 
               
               
                   
               
               
                 SOX4_1 
                 AGAAGAACAAAGGACT 
                 TAGTCCTTTGTTCTTCT 
               
               
                   
                 A 
                   
               
               
                   
               
               
                 MYC_HeLa-53_CMYC_Stanford_ChIP- 
                 CCACGTGCTC 
                 GAGCACGTGG 
               
               
                 seq|MAX_K562_MAX_HudsonAlpha_ChIP-seq 
                   
                   
               
               
                   
               
               
                 RXRA_known4 
                 GGAGTTCA 
                 TGAACTCC 
               
               
                   
               
               
                 ZNF219_1 
                 CGCCCCCCCCCC 
                 GGGGGGGGGGCG 
               
               
                   
               
               
                 PBX1_3 
                 ACATCAATCAAA 
                 TTTGATTGATGT 
               
               
                   
               
               
                 BCL6B_Bcl6b_0961_PBM 
                 GTCTTTCTAGAA 
                 TTCTAGAAAGAC 
               
               
                   
               
               
                 GATA2_SH-SY5Y_GATA2_UCD_ChIP-seq 
                 CAGATAAGAA 
                 TTCTTATCTG 
               
               
                   
               
               
                 HMX1_HMX2_1_SELEX|HMX2_2 
                 ACCAATTAAAA 
                 TTTTAATTGGT 
               
               
                   
               
               
                 HOXA4_2 
                 CAAGTTAATTAATAATC 
                 GATTATTAATTAACTTG 
               
               
                   
               
               
                 HNF1A_Tcf1_2666_PBM 
                 CCTGGTTAA 
                 TTAACCAGG 
               
               
                   
               
               
                 ZBTB14_2 
                 CCGCGCGC 
                 GCGCGCGG 
               
               
                   
               
               
                 OBOX6_1 
                 AAAAACGGATTATTG 
                 CAATAATCCGTTTTT 
               
               
                   
               
               
                 CTCF_disc3 
                 ACTAGAGGG 
                 CCCTCTAGT 
               
               
                   
               
               
                 ENSG00000234254_TG|F1_si_HocoMoco 
                 CTGTCAC 
                 GTGACAG 
               
               
                   
               
               
                 SOX9_SOX9_6_SELEX|SOX9_8 
                 AATCAATTTCAGTGATT 
                 AATCACTGAAATTGATT 
               
               
                   
               
               
                 PKNOX2_Meis2_1_SELEX|PKNOX2_MEIS1_1_SELEX|PKNO 
                 CTGTCAA 
                 TTGACAG 
               
               
                 X2_Meis3_1_SELEX|MEIS1_4|MEIS2_3|MEIS3_4 
                   
                   
               
               
                   
               
               
                 TFAP2A_TFAP2C_5_SELEX|TFAP2A_Tcfap2a_3_SELEX|TFA 
                 TGCCCTCAGGGCA 
                 TGCCCTGAGGGCA 
               
               
                 P2A_TFAP2B_3_SELEX|TFAP2A_TFAP2A_6_SELEX|TFAP2A 
                   
                   
               
               
                 TFAP2C_3_SELEX|TFAP26_4|TFAP2_known16|TFAP2_kn 
                   
                   
               
               
                 own18|TFAP2_known22 
                   
                   
               
               
                   
               
               
                 SIX6_Six6_2267_PBM 
                 GGTATCA 
                 TGATACC 
               
               
                   
               
               
                 ALX1_Al_SOLEXA_FBgn0000061_B1H 
                 CGCTAATTA 
                 TAATTAGCG 
               
               
                   
               
               
                 FOXO6_MA0480.1_ChIP-seq 
                 TCCTGTTTACA 
                 TGTAAACAGGA 
               
               
                   
               
               
                 NFATC2_1 
                 TGGAAAA 
                 TTTTCCA 
               
               
                   
               
               
                 FOXP1_1 
                 ATAAAAAACAACACAAA 
                 TTATTTGTGTTGTTTTTT 
               
               
                   
                 TAA 
                 AT 
               
               
                   
               
               
                 EN2_en_SOLEXA_2_FBgn0000577_B1H 
                 CTAATTAAGA 
                 TCTTAATTAG 
               
               
                   
               
               
                 E2F2_E2F2_2_SELEX|E2F2_3 
                 AATTTTGGCGCCAAAAT 
                 CATTTTGGCGCCAAAAT 
               
               
                   
                 G 
                 T 
               
               
                   
               
               
                 HINFP_HINFP1_1_SELEX|HINFP_2 
                 CAACGTCCGCGG 
                 CCGCGGACGTTG 
               
               
                   
               
               
                 USF1_GM12878_USF2_Stanford_ChIP-seq 
                 CCGGGCCACGTGACC 
                 GGTCACGTGGCCCGG 
               
               
                   
               
               
                 ETV5_pTH6345_PBM|ETV5_pTH6450_PBM|EP300_disc4 
                 ACTTCCGG 
                 CCGGAAGT 
               
               
                   
               
               
                 CCNT2_disc2 
                 CCCCACCCCC 
                 GGGGGTGGGG 
               
               
                   
               
               
                 HOXA6_1 
                 AAGGTAATTACCTAAT 
                 ATTAGGTAATTACCTT 
               
               
                   
               
               
                 SMARCC1_HeLa-S3_BAF155_Stanford_ChIP-seq 
                 GATGAGTCACCCCCC 
                 GGGGGGTGACTCATC 
               
               
                   
               
               
                 ISX_1 
                 ACGACTAATTAGGAGT 
                 ACTCCTAATTAGTCGT 
               
               
                   
               
               
                 HINFP_H|NFP1_3_SELEX|HINFP_4 
                 GCGGACGTTCAACGTCC 
                 GCGGACGTTGAACGTCC 
               
               
                   
                 GC 
                 GC 
               
               
                   
               
               
                 ATF1_V$CREB_02_Transfac|ATF3_known3 
                 CGGGTGACGTCC 
                 GGACGTCACCCG 
               
               
                   
               
               
                 ZNF384_ZN384_f1_HocoMoco 
                 CCGATTTTTTCC 
                 GGAAAAAATCGG 
               
               
                   
               
               
                 FOXD1_pTH3802_PBM 
                 AATGTAAACATA 
                 TATGTTTACATT 
               
               
                   
               
               
                 E2F_known2|E2F_known3|E2F_known4|E2F_known5|E2 
                 GCGCGAAA 
                 TTTCGCGC 
               
               
                 F_known6|E2F_known8|E2F_known12|E2F_known14 
                   
                   
               
               
                   
               
               
                 KLF15_KLF15_a_HocoMoco 
                 GCCCCCACCTCCCCGCC 
                 GGCGGGGAGGTGGGG 
               
               
                   
                   
                 GC 
               
               
                   
               
               
                 REST_HeLa-S3_NRSF_HudsonAlpha_ChIP-seq 
                 AGCACCATGGACAGCG 
                 CGCTGTCCATGGTGCT 
               
               
                   
               
               
                 DDIT3::CEBPA_2 
                 AGATGCAATCCC 
                 GGGATTGCATCT 
               
               
                   
               
               
                 REST_K562_NRSF_HudsonAlpha_ChIP-seq 
                 CTGTCCATGGTGCTGA 
                 TCAGCACCATGGACAG 
               
               
                   
               
               
                 HOXD12_HOXD12_3_SELEX|HOXC10_HOXC11_3_SELEX|H 
                 ATTTTACGACC 
                 GGTCGTAAAAT 
               
               
                 OXC10_HOXC11_1_SELEX|HOXC11_2|HOXC11_4 
                   
                   
               
               
                   
               
               
                 POU3F3_V$OCT1_04_Transfac 
                 TCTTTTAATTTGCATAAT 
                 TTATGATTATGCAAATT 
               
               
                   
                 CATAA 
                 AAAAGA 
               
               
                   
               
               
                 CTCF_disc9 
                 GCCCACTAGAGGGCAC 
                 GTGCCCTCTAGTGGGC 
               
               
                   
               
               
                 CEBPA_V$CEBP_C_Transfac|CEBPB_known5 
                 GGTATTTGGCAATGCAC 
                 TGTGCATTGCCAAATAC 
               
               
                   
                 A 
                 C 
               
               
                   
               
               
                 HNF4_known11 
                 GGGGCA 
                 TGCCCC 
               
               
                   
               
               
                 FOXD1_FOXI1_1_SELEX|FOXD1_Foxg1_3_SELEX|FOXD1_F 
                 GTAAACA 
                 TGTTTAC 
               
               
                 oxk1_2_SELEX|FOXD1_bin_SANGER_5_FBgn0045759_B1H 
                   
                   
               
               
                 |FOXO6_FOXO6_2_SELEX|FOXD1_FOXD3_2_SELEX|FOXD1 
                   
                   
               
               
                 _FOXL1_1_SELEX|FOXD1_FOXD2_2_SELEX|FOXO6_FOXO4 
                   
                   
               
               
                 _2_SELEX|KIAA0415_MA0297.1_PBM,|FOXP3_FOXP3_1_S 
                   
                   
               
               
                 ELEX|FOXD2_2|FOXD3_4|FOXI1_3|FOXL1_4|FOXO4_4|F 
                   
                   
               
               
                 OXO6_2|FOXP3_2|FOXG1_5|FOXK1_4 
                   
                   
               
               
                   
               
               
                 ZIC4_V$ZIC1_01_Transfac|ZIC4_ZIC3_f1_HocoMoco|ZIC4_ 
                 GACCACCCA 
                 TGGGTGGTC 
               
               
                 V$Z1C3_01_Transfac|ZIC1_1|ZIC3_1 
                   
                   
               
               
                   
               
               
                 SIX5_known5 
                 ATAAATGACACCTATCA 
                 TGATAGGTGTCATTTAT 
               
               
                   
               
               
                 ZIC4_V$Z1C2_01_Transfac|ZIC4_ZIC1_f1_HocoMoco|ZIC4_ 
                 GACCACCCC 
                 GGGGTGGTC 
               
               
                 ZIC2_f1_HocoMoco|ZIC2_1 
                   
                   
               
               
                   
               
               
                 TFAP2_known1 
                 CGCCCGCCGGCG 
                 CGCCGGCGGGCG 
               
               
                   
               
               
                 TEF_TEF_f1_HocoMoco 
                 CATTTACATAAACA 
                 TGTTTATGTAAATG 
               
               
                   
               
               
                 HOXA7_pTH6498_PBM 
                 AAGTAATTACT 
                 AGTAATTACTT 
               
               
                   
               
               
                 AR1D3A_2 
                 GAATTTTAATTAAACCC 
                 GGGTTTAATTAAAATTC 
               
               
                   
               
               
                 STAT6_MA0520.1_ChIP-seq 
                 ATTTCTCAGGAAATG 
                 CATTTCCTGAGAAAT 
               
               
                   
               
               
                 HIC1_2 
                 GAGGGGTGCCCGCAGG 
                 GGCCTGCGGGCACCCCT 
               
               
                   
                 CC 
                 C 
               
               
                   
               
               
                 IRF_known6 
                 AAGTGAA 
                 TTCACTT 
               
               
                   
               
               
                 HOXC5_I$DFD_01_Transfac 
                 ACCAAGTAATTCCTAG 
                 CTAGGAATTACTTGGT 
               
               
                   
               
               
                 TCF4_pTH5101_PBM 
                 CACACCTGG 
                 CCAGGTGTG 
               
               
                   
               
               
                 SP9_SP2_si_HocoMoco 
                 GAGGGGGGCGGGGCTA 
                 TTAGCCCCGCCCCCCTC 
               
               
                   
                 A 
                   
               
               
                   
               
               
                 THRB_THRA_1_SELEX|THRA_1 
                 GTGACCTCATAAGGTCA 
                 GTGACCTTATGAGGTCA 
               
               
                   
                 C 
                 C 
               
               
                   
               
               
                 GBX1_1 
                 TACACTAATTAGTGGCA 
                 TGCCACTAATTAGTGTA 
               
               
                   
               
               
                 BPTF_1 
                 AACCACAACACATA 
                 TATGTGTTGTGGTT 
               
               
                   
               
               
                 SIX2_So_Cell_FBgn0003460_B1H 
                 AATGATA 
                 TATCATT 
               
               
                   
               
               
                 STAT6_V$STAT6_02_Transfac|STAT_known14 
                 AGGAAGTC 
                 GACTTCCT 
               
               
                   
               
               
                 ELF3_MA0598.1_ChIP-seq 
                 CAGGAAGG 
                 CCTTCCTG 
               
               
                   
               
               
                 PRDM1_PRDM1_a_HocoMoco 
                 GAAAGTGAAAGTGA 
                 TCACTTTCACTTTC 
               
               
                   
               
               
                 DBP_1 
                 AGCAAAC 
                 GTTTGCT 
               
               
                   
               
               
                 FOXA_disc4 
                 AAATTCCT 
                 AGGAATTT 
               
               
                   
               
               
                 ZEB1_V$DELTAEF1_01_Transfac 
                 TCTCACCTGAA 
                 TTCAGGTGAGA 
               
               
                   
               
               
                 CTCF_HUVEC_CTCF_Broad_ChIP-seq 
                 CCCGGCGCCCCCTGGTG 
                 CGGCCACCAGGGGGCG 
               
               
                   
                 GCCG 
                 CCGGG 
               
               
                   
               
               
                 AR_AR_2_SELEX|NR3C1_known16 
                 GGGAACACGGTGTACC 
                 GGGTACACCGTGTTCCC 
               
               
                   
                 C 
                   
               
               
                   
               
               
                 ZNF384_1 
                 GAAAAAATC 
                 GATTTTTTC 
               
               
                   
               
               
                 MSX1_MSX2_1_SELEX|MSX1_MSX1_1_SELEX|MSX1_Msx3 
                 GCAATTAAAAACCAATT 
                 TAATTGGTTTTTAATTGC 
               
               
                 _1_SELEX|MSX1_3|MSX2_3|MSX2_5 
                 A 
                   
               
               
                   
               
               
                 NFIA_MA0161.1_High-throughput|NFIC_4 
                 TGCCAA 
                 TTGGCA 
               
               
                   
               
               
                 ATFLCREM_f1_HocoMoco 
                 CACTGACGTCA 
                 TGACGTCAGTG 
               
               
                   
               
               
                 HIC1_1 
                 CCCCGGGCACCCGGG 
                 CCCGGGTGCCCGGGG 
               
               
                   
               
               
                 POU6F1_pTH6519_PBM 
                 ATTAATTAAT 
                 ATTAATTAAT 
               
               
                   
               
               
                 POU3F3_V$OCT1_03_Transfac|POU2F2_known3 
                 ACCTCATTACGAG 
                 CTCGTAATGAGGT 
               
               
                   
               
               
                 PAX9_Poxm_SOLEXA_5_FBgn0003129_B1H 
                 CAAAAGCAATCAACCGT 
                 TCACGGTTGATTGCTTTT 
               
               
                   
                 GA 
                 G 
               
               
                   
               
               
                 RFX8_Rfx3_3961_PBM|RFX8_pTH9278_PBM|RFX8_pTH91 
                 CGTTGCTAAG 
                 CTTAGCAACG 
               
               
                 94_PBM|RFX8_pTH9269_PBM 
                   
                   
               
               
                   
               
               
                 ELF2_1 
                 GTGACCTACTTCCTGGC 
                 TGCCAGGAAGTAGGTC 
               
               
                   
                 A 
                 AC 
               
               
                   
               
               
                 ETV5_MA0062.2_ChIP-seq|ETS_known9 
                 CCGGAAGTGGC 
                 GCCACTTCCGG 
               
               
                   
               
               
                 POU2F2_POU2F2_2_SELEX|POU2F2_3 
                 CATGCATATGCAAA 
                 TTTGCATATGCATG 
               
               
                   
               
               
                 EOMES_TBX21_4_SELEX|TBX21_4 
                 GGTGTGATATCACACC 
                 GGTGTGATATCACACC 
               
               
                   
               
               
                 NHLH2_V$HEN1_01_Transfac 
                 GAGGGGCGCAGCTGCG 
                 TTGGGGCGCAGCTGCG 
               
               
                   
                 CCCCAA 
                 CCCCTC 
               
               
                   
               
               
                 NR2F2_NR2F6 _a_HocoMoco 
                 AGGACAAAGTTCACTTG 
                 TCAAGTGAACTTTGTCC 
               
               
                   
                 A 
                 T 
               
               
                   
               
               
                 E2F1_E2F1_4_SELEX 
                 AAATGGCGCCATTT 
                 AAATGGCGCCATTT 
               
               
                   
               
               
                 MAFK_HepG2_MAFF_Stanford_ChIP-seq 
                 TGCTGACTCAGCAAA 
                 TTTGCTGAGTCAGCA 
               
               
                   
               
               
                 PPARA_PPARG_si_HocoMoco|NR2F2_COT1_si_HocoMoco 
                 CAAAGGTCA 
                 TGACCTTTG 
               
               
                   
               
               
                 IRX3_pTH6408_PBM 
                 ATTACAAG 
                 CTTGTAAT 
               
               
                   
               
               
                 ENSG00000187728_pTH5087_PBM 
                 AACATATGG 
                 CCATATGTT 
               
               
                   
               
               
                 CEBPD_1 
                 AATTGCGTCACT 
                 AGTGACGCAATT 
               
               
                   
               
               
                 RELA_SRP001843_p65_Input_LPSstim_ChIP- 
                 GGGAAATTCCC 
                 GGGAATTTCCC 
               
               
                 seq|RELA_TF65_f2_HocoMoco|NFKB1_MA0105.3_ChIP- 
                   
                   
               
               
                 seq 
                   
                   
               
               
                   
               
               
                 RFX8_pTH9249_PBM 
                 CCCTGGCAAC 
                 GTTGCCAGGG 
               
               
                   
               
               
                 STAT_disc2|BCL_disc2 
                 AATGACTCAT 
                 ATGAGTCATT 
               
               
                   
               
               
                 SREBP_disc1 
                 CGTCGCCATGGCAAC 
                 GTTGCCATGGCGACG 
               
               
                   
               
               
                 SPI1_known2 
                 ACTTCCT 
                 AGGAAGT 
               
               
                   
               
               
                 GLIS1_GLIS1_1_SELEX|GLIS1_1 
                 AGACCCCCCACGAAGC 
                 GCTTCGTGGGGGGTCT 
               
               
                   
               
               
                 NFAT_1 
                 ATTTTTCCTCTG 
                 CAGAGGAAAAAT 
               
               
                   
               
               
                 HMX1_HMX1_1_SELEX|H MX1_2 
                 AGCAATTAAAA 
                 TTTTAATTGCT 
               
               
                   
               
               
                 HOXB5_1 
                 ACGGTAATTAGCTCAT 
                 ATGAGCTAATTACCGT 
               
               
                   
               
               
                 CDC5L_V$CDC5_01_Transfac|CDC5L1 
                 GATTTAACATAA 
                 TTATGTTAAATC 
               
               
                   
               
               
                 MEF2B_Mv90_ChIP-seq 
                 AAAATAGC 
                 GCTATTTT 
               
               
                   
               
               
                 USF1_A549_USF1_HudsonAlpha_ChIP-seq 
                 CCCGGTCACGTGACC 
                 GGTCACGTGACCGGG 
               
               
                   
               
               
                 POU2F2_POU2F2_1_SELEX|POU2F2_2 
                 AATTTGCATAT 
                 ATATGCAAATT 
               
               
                   
               
               
                 MECP2_pTH3054_PBM 
                 AATGACACTA 
                 TAGTGTCATT 
               
               
                   
               
               
                 LHX8_Lhx8_2247_PBM 
                 CCAATCAGC 
                 GCTGATTGG 
               
               
                   
               
               
                 HOXA1_1|HOXA5_3 
                 ACGGTAATTAGCTCAG 
                 CTGAGCTAATTACCGT 
               
               
                   
               
               
                 MSX1_Dr_SOLEXA_FBgn0000492_B1H|HOXC5_Ubx_FlyRe 
                 CAATTA 
                 TAATTG 
               
               
                 g_FBgn0003944_B1H 
                   
                   
               
               
                   
               
               
                 GATA2_V$GATA1_05_Transfac|GATA_known8 
                 GCAGATAACA 
                 TGTTATCTGC 
               
               
                   
               
               
                 CEBPG_pTH5257_PBM 
                 GATTGCGTAA 
                 TTACGCAATC 
               
               
                   
               
               
                 SMARC_disc1 
                 CTGAGTCACC 
                 GGTGACTCAG 
               
               
                   
               
               
                 XBP1_2 
                 ATTAAATGACACGTCAT 
                 CTGAAAGATGACGTGTC 
               
               
                   
                 CTTTCAG 
                 ATTTAAT 
               
               
                   
               
               
                 VAX2_1 
                 GTCTTAATTAGTGCAC 
                 GTGCACTAATTAAGAC 
               
               
                   
               
               
                 NFIL3_V$E4BP4_01_Transfac|NFIL3_1 
                 CGTTACATAACG 
                 CGTTATGTAACG 
               
               
                   
               
               
                 FOXD1_V$FREAC2_01_Transfac|FOXF2_1 
                 CAAACGTAAACAATCC 
                 GGATTGTTTACGTTTG 
               
               
                   
               
               
                 ENO1_ENOA_si_HocoMoco 
                 CACCACGTGGGCA 
                 TGCCCACGTGGTG 
               
               
                   
               
               
                 ZBTB42_V$RP58_01_Transfac|ZBTB18_1 
                 GAAACATCTGGA 
                 TCCAGATGTTTC 
               
               
                   
               
               
                 IKZF1_V$IK3_01_Transfac|IKZF3_1 
                 GGTATTCCCAGTA 
                 TACTGGGAATACC 
               
               
                   
               
               
                 THAP1_disc2 
                 AACATGGCGG 
                 CCGCCATGTT 
               
               
                   
               
               
                 SRF_Srf_3509_PBM 
                 CCAAATTTGG 
                 CCAAATTTGG 
               
               
                   
               
               
                 FOXA_disc5 
                 AAAGGTCAA 
                 TTGACCTTT 
               
               
                   
               
               
                 NR4A2_NR4A2_si_HocoMoco|NR4A2_NR4A1_f1_HocoMo 
                 AAAGGTCAC 
                 GTGACCTTT 
               
               
                 co 
                   
                   
               
               
                   
               
               
                 HES1_1 
                 AAGCCTCGTGGCCAG 
                 CTGGCCACGAGGCTT 
               
               
                   
               
               
                 REST_disc5 
                 CAGCACCCCGG 
                 CCGGGGTGCTG 
               
               
                   
               
               
                 TCF12_known1 
                 CAGCTGGC 
                 GCCAGCTG 
               
               
                   
               
               
                 CTCFL_K562_CTCFL_HudsonAlpha_ChIP-seq 
                 CCGCCAGGGGGCGCC 
                 GGCGCCCCCTGGCGG 
               
               
                   
               
               
                 CTCF_HeLa-S3_CTCF_UW_ChIP-seq 
                 CCACCAGGGGGCGCCG 
                 CCGGCGCCCCCTGGTGG 
               
               
                   
                 G 
                   
               
               
                   
               
               
                 IRX3_pTH5976_PBM 
                 AAACATGTACT 
                 AGTACATGTTT 
               
               
                   
               
               
                 HOXC10_Hoxa11_2_SELEX|HOXA11_3 
                 ATTTTATGGCC 
                 GGCCATAAAAT 
               
               
                   
               
               
                 FOXO6_pTH8995_PBM 
                 TTGTAAACAA 
                 TTGTTTACAA 
               
               
                   
               
               
                 ALX1_3 
                 CGCATTAATTAATTGGC 
                 GCCAATTAATTAATGCG 
               
               
                   
               
               
                 ZNF274_K562b_ZNF274_UCD_ChIP-seq 
                 CCAGTATGAATTCTC 
                 GAGAATTCATACTGG 
               
               
                   
               
               
                 BACH1_Mv46_ChIP- 
                 TGACTCAGCA 
                 TGCTGAGTCA 
               
               
                 seq|MAFK_MAFK_si_HocoMoco|MAF_disc1 
                   
                   
               
               
                   
               
               
                 HOXC5_HXA7_f1_HocoMoco 
                 AATCAATAGATTGGA 
                 TCCAATCTATTGATT 
               
               
                   
               
               
                 ZFHX3_pTH6494_PBM 
                 ACTAATTAG 
                 CTAATTAGT 
               
               
                   
               
               
                 NR2F2_pTH5882_PBM 
                 AGAGGTCAC 
                 GTGACCTCT 
               
               
                   
               
               
                 CR936877.3_usp_SANGER_5_FBgn0003964_B1H 
                 AGAGGTCAA 
                 TTGACCTCT 
               
               
                   
               
               
                 STAT_known1 
                 TTCCCGGAA 
                 TTCCGGGAA 
               
               
                   
               
               
                 IRX3_Irx2_0900_PBM 
                 ATTACATGA 
                 TCATGTAAT 
               
               
                   
               
               
                 EGR3_K562_EGR1_HudsonAlpha_ChIP-seq 
                 CCCCCCCCCCCGCCCAC 
                 TGCGTGGGCGGGGGGG 
               
               
                   
                 GCA 
                 GGGG 
               
               
                   
               
               
                 MEF2B_MEF26_1_SELEX|MEF2B_1 
                 GCTATAAATAGC 
                 GCTATTTATAGC 
               
               
                   
               
               
                 HAND2_Hand_da_SANGER_5_FBgn0032209_B1H|TCF4_H 
                 CACATGGCC 
                 GGCCATGTG 
               
               
                 and_da_SANGER_5_FBgn0000413_B1H 
                   
                   
               
               
                   
               
               
                 HOXC1O_HXD9_f1_HocoMoco 
                 AGTTTTATTG 
                 CAATAAAACT 
               
               
                   
               
               
                 ETV5_ELK4_f1_HocoMoco 
                 CACCGGAAGTA 
                 TACTTCCGGTG 
               
               
                   
               
               
                 JUN_K562_JUND_Stanford_ChIP-seq 
                 GATGACGTCACCCC 
                 GGGGTGACGTCATC 
               
               
                   
               
               
                 MTF1_MTF1_1_SELEX|MTF1_3 
                 GTGCCGTGTGCAAA 
                 TTTGCACACGGCAC 
               
               
                   
               
               
                 ZBTB7A_disc1 
                 AGCGCCCCCT 
                 AGGGGGCGCT 
               
               
                   
               
               
                 FOXD1_Foxj1_3125_PBM 
                 AATAAACAAACA 
                 TGTTTGTTTATT 
               
               
                   
               
               
                 USF1_K562_USF2_Stanford_ChIP- 
                 GGGTCACGTGACC 
                 GGTCACGTGACCC 
               
               
                 seq|USF1_HepG2_USF2_Stanford_ChIP-seq 
                   
                   
               
               
                   
               
               
                 PKNOX2_Hth_SOLEXA_FBgn0001235_B1H|TG|F1_Vis_SOL 
                 TGTCAA 
                 TTGACA 
               
               
                 EXA_FBgn0033748_B1H|TG|F1_Achi_SOLEXA_FBgn003374 
                   
                   
               
               
                 9_B1H 
                   
                   
               
               
                   
               
               
                 KLF4_CG12029_SOLEXA_5_FBgn0035454_B1H 
                 CCAGCCACACCCACC 
                 GGTGGGTGTGGCTGG 
               
               
                   
               
               
                 TP53_3 
                 AGACAAGTCC 
                 GGACTTGTCT 
               
               
                   
               
               
                 GATA2_V$GATA1_01_Transfac|GATA_known1 
                 CCCTATCACG 
                 CGTGATAGGG 
               
               
                   
               
               
                 HIVEP3_ZEP1_f1_HocoMoco 
                 GGGGATTTCCCA 
                 TGGGAAATCCCC 
               
               
                   
               
               
                 CDX_1 
                 TACAAACAAAGTAATAA 
                 TTTATTACTTTGTTTGTA 
               
               
                   
                 A 
                   
               
               
                   
               
               
                 NFIC_1 
                 CACCTGTTCAATTTGGC 
                 TGTTGGCTCCGTGCCAA 
               
               
                   
                 ACGGAGCCAACA 
                 ATTGAACAGGTG 
               
               
                   
               
               
                 POU3F3_pTH9381_PBM 
                 ATAATGCATA 
                 TATGCATTAT 
               
               
                   
               
               
                 E2F2_pTH9195_PBM|E2F2_pTH9291_PBM|E2F3_pTH9382 
                 TTGGCGCCAA 
                 TTGGCGCCAA 
               
               
                 PBM 
                   
                   
               
               
                   
               
               
                 PRRX2_3 
                 AAAGCTAATTAGCGAAA 
                 TTTCGCTAATTAGCTTT 
               
               
                   
               
               
                 STAT6_STAT6_do_HocoMoco 
                 AAATTCCTGGGAA 
                 TTCCCAGGAATTT 
               
               
                   
               
               
                 EGR3_EGR2_si_HocoMoco 
                 CCGCCCACGCC 
                 GGCGTGGGCGG 
               
               
                   
               
               
                 NR6A1_NR6A1_do_HocoMoco 
                 AAGTTCAAGGTCA 
                 TGACCTTGAACTT 
               
               
                   
               
               
                 TAL1_disc1 
                 CCTTATCTGCCCCCACCA 
                 CTGGTGGGGGCAGATA 
               
               
                   
                 G 
                 AGG 
               
               
                   
               
               
                 ARID5A_ARI5B_f1_HocoMoco 
                 CACAATACTAACC 
                 GGTTAGTATTGTG 
               
               
                   
               
               
                 FOXD1_FoxI1_2809_PBM 
                 AATGTAAACA 
                 TGTTTACATT 
               
               
                   
               
               
                 FOXD1_Foxc1_1_SELEX|FOXD1_FOXC2_2_SELEX|FOXC2_2 
                 GTAAATAAACA 
                 TGTTTATTTAC 
               
               
                 |FOXC1_6 
                   
                   
               
               
                   
               
               
                 RAR_1 
                 AAGGACAGG 
                 CCTGTCCTT 
               
               
                   
               
               
                 STAT4_V$STAT4_01_Transfac 
                 AAGAAATC 
                 GATTTCTT 
               
               
                   
               
               
                 PRDM1_disc1 
                 AGTGAAAGTG 
                 CACTTTCACT 
               
               
                   
               
               
                 STAT5B_V$STAT5A_04_Transfac 
                 AAGAAATG 
                 CATTTCTT 
               
               
                   
               
               
                 TEAD1_1 
                 CATTCC 
                 GGAATG 
               
               
                   
               
               
                 NR3C1_known13 
                 ATAAGAACACCCTGTAC 
                 GGCGGGTACAGGGTGT 
               
               
                   
                 CCGCC 
                 TCTTAT 
               
               
                   
               
               
                 ZNF713_ZNF713_1_SELEX|ZNF713_1 
                 TAGAAAAATGCCACGAA 
                 TTCGTGGCATTTTTCTA 
               
               
                   
               
               
                 EGR3_EGR4_1_SELEX|EGR4_2 
                 AAATGCGTGGGCGTAA 
                 TTACGCCCACGCATTT 
               
               
                   
               
               
                 HNF1A_HNF1A_f1_HocoMoco 
                 GGTTAATAATTAACC 
                 GGTTAATTATTAACC 
               
               
                   
               
               
                 NFIC_3 
                 TCTTGGCAAGTATCCAA 
                 TTGGATACTTGCCAAGA 
               
               
                   
               
               
                 SP1_disc1 
                 ACCCCCCCTTCTGATTG 
                 TCAGCCAATCAGAAGG 
               
               
                   
                 GCTGA 
                 GGGGGT 
               
               
                   
               
               
                 EGR3_EGR4_2_SELEX 
                 AAATGCGTGGGCGTAT 
                 ATACGCCCACGCATTT 
               
               
                   
               
               
                 MEF2B_MEF2C_f1_HocoMoco 
                 TCTATTTATAGAA 
                 TTCTATAAATAGA 
               
               
                   
               
               
                 CACD_2 
                 CCACACCC 
                 GGGTGTGG 
               
               
                   
               
               
                 ELF1_disc3 
                 CCCCGGCCTCCGC 
                 GCGGAGGCCGGGG 
               
               
                   
               
               
                 NR3C1_known5 
                 AGAACAGA 
                 TCTGTTCT 
               
               
                   
               
               
                 PTF1A_Fer3_da_SANGER_5_FBgn0037937_B1H|TCF4_Fer 
                 CAGCTGTTAC 
                 GTAACAGCTG 
               
               
                 3_da_SANGER_5_FBgn0000413_B1H 
                   
                   
               
               
                   
               
               
                 BHLHE40_disc1 
                 AGTCACGTGA 
                 TCACGTGACT 
               
               
                   
               
               
                 HERPUD1_1 
                 CAGTTGCTAGGCAACGG 
                 CCCGTTGCCTAGCAACT 
               
               
                   
                 G 
                 G 
               
               
                   
               
               
                 HBP1_1 
                 ACTATGAATGAATGAT 
                 ATCATTCATTCATAGT 
               
               
                   
               
               
                 REST_disc8 
                 CCTCGGACAGCTGC 
                 GCAGCTGTCCGAGG 
               
               
                   
               
               
                 SOX11_Sox11_2266_PBM 
                 ATTGTTCTC 
                 GAGAACAAT 
               
               
                   
               
               
                 JUN_H1-hESCJUND_HudsonAlpha_ChIP-seq 
                 ATGACTCACCC 
                 GGGTGAGTCAT 
               
               
                   
               
               
                 MNT_MNT_1_SELEX|MNT_1 
                 ACCACGTGCC 
                 GGCACGTGGT 
               
               
                   
               
               
                 TFAP4_3 
                 ACCAGCTGTG 
                 CACAGCTGGT 
               
               
                   
               
               
                 OSR2_bowl_SANGER_5_FBgn0004893_B1H 
                 CCAGTAGC 
                 GCTACTGG 
               
               
                   
               
               
                 HOXB13_HXD13_f1_HocoMoco 
                 TCCCTAATAAA 
                 TTTATTAGGGA 
               
               
                   
               
               
                 SPIC_GM12891_PU1_HudsonAlpha_ChIP-seq 
                 AAAGAGGAAGTGAAAC 
                 CTAGTTTCACTTCCTCTT 
               
               
                   
                 TAG 
                 T 
               
               
                   
               
               
                 RELA_GM18951_NFKB_Stanford_ChIP-seq 
                 GGGGATTTCCA 
                 TGGAAATCCCC 
               
               
                   
               
               
                 NKX2-8_3 
                 CCACTTGAA 
                 TTCAAGTGG 
               
               
                   
               
               
                 TCF4_sage_da_SANGER_5_FBgn0000413_B1H 
                 AAAACACCTGT 
                 ACAGGTGTTTT 
               
               
                   
               
               
                 ATF7_V$CREBP1_Q2_Transfac|ATF2_2 
                 AGTTACGTCACC 
                 GGTGACGTAACT 
               
               
                   
               
               
                 AR_GCR_do_HocoMoco 
                 CCGGGACAGTCTGTTCT 
                 GAGAACAGACTGTCCCG 
               
               
                   
                 C 
                 G 
               
               
                   
               
               
                 OVOL1_I$OVO_01_Transfac 
                 GTGACTGTTACTATA 
                 TATAGTAACAGTCAC 
               
               
                   
               
               
                 CTCF_WERI-Rb-1_CTCF_UW_ChIP- 
                 CCACCAGGGGGCGCC 
                 GGCGCCCCCTGGTGG 
               
               
                 seq|CTCF_GM12873_CTCF_UW_ChIP- 
                   
                   
               
               
                 seq|CTCF_GM12864_CTCF_UW_ChIP- 
                   
                   
               
               
                 seq|CTCF_Gliobla_CTCF_UT-A_ChIP-seq|CTCF_T- 
                   
                   
               
               
                 47D_CTCF_HudsonAlpha_ChIP- 
                   
                   
               
               
                 seq|CTCF_AG04450_CTCF_UW_ChIP-seq 
                   
                   
               
               
                   
               
               
                 OLIG2_pTH5164_PBM 
                 CCATATGGTAC 
                 GTACCATATGG 
               
               
                   
               
               
                 KLF4_KLF6_si_HocoMoco 
                 CCGCCCCC 
                 GGGGGCGG 
               
               
                   
               
               
                 RORB_pTH6612_PBM 
                 ACTGACCTCT 
                 AGAGGTCAGT 
               
               
                   
               
               
                 EOMES_EOMES_1_SELEX|EOMES_2 
                 AAGGTGTGAAAAT 
                 ATTTTCACACCTT 
               
               
                   
               
               
                 SOX9_SOX8_3_SELEX|SOX8_4 
                 GAACAATTGCAGTGTTC 
                 GAACACTGCAATTGTTC 
               
               
                   
               
               
                 ESRRG_Esrra_2_SELEX|ESRRG_ESRRA_1_SELEX|ESRRA_kn 
                 ATGACCTTGAA 
                 TTCAAGGTCAT 
               
               
                 own7|ESRRA_known11 
                   
                   
               
               
                   
               
               
                 SOX9_SOX9_7_SELEX|SOX9_9 
                 AATGAATTGCAGTCATT 
                 AATGACTGCAATTCATT 
               
               
                   
               
               
                 VDR_3 
                 AAACGGTTCAGGAAGTT 
                 GATGAACTTCCTGAACC 
               
               
                   
                 CATC 
                 GTTT 
               
               
                   
               
               
                 POU6F2_POU6F2_1_SELEX|POU6F1_Pou6f1_1731_PBM|P 
                 AGCTCATTAT 
                 ATAATGAGCT 
               
               
                 OU6F1_Pou6f1_3733_PBM|POU6F2_1 
                   
                   
               
               
                   
               
               
                 RAD21_disc10 
                 CCAGGGGGCAG 
                 CTGCCCCCTGG 
               
               
                   
               
               
                 IRF7_IRF7_f1_HocoMoco 
                 GAAAGTGAAA 
                 TTTCACTTTC 
               
               
                   
               
               
                 HOXC5_zen_FlyReg_FBgn0004053_B1H 
                 AATTTTAATG 
                 CATTAAAATT 
               
               
                   
               
               
                 PATZ1_V$MAZR_01_Transfac|PATZ1_1 
                 GGGGGGGGGGCCA 
                 TGGCCCCCCCCCC 
               
               
                   
               
               
                 FOXO3_3 
                 TGTAAACA 
                 TGTTTACA 
               
               
                   
               
               
                 HOXC10_HXA10_f1_HocoMoco 
                 GATGATTTATGA 
                 TCATAAATCATC 
               
               
                   
               
               
                 YY1_disc4 
                 GCAGCCGGCGCCGCC 
                 GGCGGCGCCGGCTGC 
               
               
                   
               
               
                 SOX7_SOX7_1_SELEX|SOX7_2 
                 AACAATGAACATTGTT 
                 AACAATGTTCATTGTT 
               
               
                   
               
               
                 MITF_pTH5072_PBM|BACH1_Mv45_ChIP- 
                 CACGTGAC 
                 GTCACGTG 
               
               
                 seq|ATF3_Mv41_ChIP-seq 
                   
                   
               
               
                   
               
               
                 HNF4G_HNF4A_2_SELEX|HNF4_known17 
                 AATGGACTTTGACCCC 
                 GGGGTCAAAGTCCATT 
               
               
                   
               
               
                 BARX2_1 
                 TAAGTAATTAGTTATA 
                 TATAACTAATTACTTA 
               
               
                   
               
               
                 PAX3_PAX7_1_SELEX|PAX3_PAX7_2_SELEX|PAX3_PAX3_1 
                 TAATCGATTA 
                 TAATCGATTA 
               
               
                 SELEX|PAX3_3|PAX7_2|PAX7_3 
                   
                   
               
               
                   
               
               
                 LHX9_pTH5812_PBM 
                 CTAATTAGTA 
                 TACTAATTAG 
               
               
                   
               
               
                 MYBL2_MYBL2_1_SELEX|MYBL2_1 
                 AACCGTTAACCGTT 
                 AACGGTTAACGGTT 
               
               
                   
               
               
                 FOSL1_FOS_si_HocoMoco 
                 GACCAATCAGAA 
                 TTCTGATTGGTC 
               
               
                   
               
               
                 EMX2_Emx2_3420_PBM 
                 CTAATTAGC 
                 GCTAATTAG 
               
               
                   
               
               
                 CTCF_disc7 
                 CCACCAGGGG 
                 CCCCTGGTGG 
               
               
                   
               
               
                 SIX6_MA0199.1_B1H 
                 TATCA 
                 TGATA 
               
               
                   
               
               
                 TEAD4_TEAD4_f1_HocoMoco 
                 AAAAATAGCCCT 
                 AGGGCTATTTTT 
               
               
                   
               
               
                 SOX_1 
                 CTCTTTGTTACGA 
                 TCGTAACAAAGAG 
               
               
                   
               
               
                 C11orf9_pTH8554_PBM 
                 CCGTACCACC 
                 GGTGGTACGG 
               
               
                   
               
               
                 TBX5_2 
                 TAACACCTCA 
                 TGAGGTGTTA 
               
               
                   
               
               
                 SP9_V$SP1_01_Transfac|SP1_known1 
                 ACCCCGCCCC 
                 GGGGCGGGGT 
               
               
                   
               
               
                 OSR1_1 
                 TTTTACAGTAGCAAAA 
                 TTTTGCTACTGTAAAA 
               
               
                   
               
               
                 ETV5_pnt_SANGER_5_FBgn0003118_B1H|ETV5_Ets21c_S 
                 ACCGGAAAT 
                 ATTTCCGGT 
               
               
                 ANGER_5_FBgn0005660_B1H 
                   
                   
               
               
                   
               
               
                 AP3_1 
                 AATTTAGA 
                 TCTAAATT 
               
               
                   
               
               
                 SIX2_So_SOLEXA_FBgn0003460_B1H 
                 ATATGATA 
                 TATCATAT 
               
               
                   
               
               
                 FOXD1_FOXD3_1_SELEX|FOXD3_3 
                 AGTAAATATTAACT 
                 AGTTAATATTTACT 
               
               
                   
               
               
                 PAX5_disc2 
                 CAAGCGTGAC 
                 GTCACGCTTG 
               
               
                   
               
               
                 NR2F2_MA0017.1_COMPILED|HNF4_known2|HNF4_know 
                 AGGTTCAAAGGTCA 
                 TGACCTTTGAACCT 
               
               
                 n13 
                   
                   
               
               
                   
               
               
                 NFIC_2 
                 TCTTGGCAAGAAGCCAA 
                 TTTGGCTTCTTGCCAAG 
               
               
                   
                 A 
                 A 
               
               
                   
               
               
                 MAX_MXL3_PBM|CLOCK::ARNTL1 
                 ACACGTGG 
                 CCACGTGT 
               
               
                   
               
               
                 NPAS2_Clk_cyc_SANGER_5_FBgn0023076_B1H|ARNT2_Cl 
                 ACACGTGA 
                 TCACGTGT 
               
               
                 k_cyc_SANGER_5_FBgn0023094_B1H 
                   
                   
               
               
                   
               
               
                 BCL_disc6 
                 GGGAAAGCCC 
                 GGGCTTTCCC 
               
               
                   
               
               
                 MLX1P_pTH5466_PBM 
                 ACACGTGC 
                 GCACGTGT 
               
               
                   
               
               
                 MYC_known16 
                 ACCACGTGGTC 
                 GACCACGTGGT 
               
               
                   
               
               
                 FOXD1_MA0148.3_ChIP-seq 
                 CAAAGTAAACATGGA 
                 TCCATGTTTACTTTG 
               
               
                   
               
               
                 EN2_EN2_1_SELEX|EN2_2 
                 GTTAATTGGA 
                 TCCAATTAAC 
               
               
                   
               
               
                 FOXD1_MA0047.2_ChIP-seq|FOXA_known6 
                 CCTAAGTAAACA 
                 TGTTTACTTAGG 
               
               
                   
               
               
                 MEF2B_MA0052.2_ChIP-seq 
                 AGCTAAAAATAGCAT 
                 ATGCTATTTTTAGCT 
               
               
                   
               
               
                 RBPJ_I$SUH_01_Transfac 
                 ACTGTGGGAAACG 
                 CGTTTCCCACAGT 
               
               
                   
               
               
                 PAX8_2 
                 ACTCACGCAATACTG 
                 CAGTATTGCGTGAGT 
               
               
                   
               
               
                 CEBPG_1 
                 CTCATTTCAAAAA 
                 TTTTTGAAATGAG 
               
               
                   
               
               
                 MEIS3_1 
                 AATTACCTGTCAATAC 
                 GTATTGACAGGTAATT 
               
               
                   
               
               
                 AR_pTH5924_PBM 
                 ATGTTCCCA 
                 TGGGAACAT 
               
               
                   
               
               
                 NKX6-3_1 
                 CAAAGTAATTAATTATC 
                 GATAATTAATTACTTTG 
               
               
                   
               
               
                 FEZF2_CG31670_SANGER_5_FBgn0031375_B1H 
                 AAATGAGCAAC 
                 GTTGCTCATTT 
               
               
                   
               
               
                 TWIST2_twi_da_SANGER_5_FBgn0003900_B1H|TCF4_twi 
                 AACATCTGGT 
                 ACCAGATGTT 
               
               
                 _da_SANGER_5_FBgn0000413_B1H 
                   
                   
               
               
                   
               
               
                 MYBL1_MYBL1_3_SELEX|MYBL1_4 
                 AAAACCGTTAA 
                 TTAACGGTTTT 
               
               
                   
               
               
                 MYB_2 
                 CTCAACTGGC 
                 GCCAGTTGAG 
               
               
                   
               
               
                 TP73_Tp73_1_SELEX|TP73_1 
                 GACATGTCCAGACATGT 
                 GACATGTCTGGACATGT 
               
               
                   
                 C 
                 C 
               
               
                   
               
               
                 JUN_GM12878_JUND_Stanford_ChIP-seq 
                 AGTTTCGATATGAGTCA 
                 GATGACTCATATCGAAA 
               
               
                   
                 TC 
                 CT 
               
               
                   
               
               
                 HOXB13_HOXA13_1_SELEX|HOXB13_HOXB13_1_SELEX|H 
                 CCAATAAAAC 
                 GTTTTATTGG 
               
               
                 OXA13_2|HOXB13_2 
                   
                   
               
               
                   
               
               
                 HOXB13_HOXC13_1_SELEX|HOXB13_HOXA13_3_SELEX|H 
                 CCAATAAAAA 
                 TTTTTATTGG 
               
               
                 OXB13_Hoxd13_1_SELEX|HOXB13_HOXD13_1_SELEX|HO 
                   
                   
               
               
                 XA13_4|HOXC13_2|HOXD13_2|HOXD13_4 
                   
                   
               
               
                   
               
               
                 IRX3_Irx5_2385_PBM 
                 AATTACATG 
                 CATGTAATT 
               
               
                   
               
               
                 NFKB_disc4 
                 AAAGTCCCC 
                 GGGGACTTT 
               
               
                   
               
               
                 POU3F3_V$OCT1_C16_Transfac 
                 CTGATTTGCATATTC 
                 GAATATGCAAATCAG 
               
               
                   
               
               
                 TEAD1_TEAD1_1_SELEX|TEAD4_TEAD4_1_SELEX|TEAD1_3 
                 ATGGAATGTG 
                 CACATTCCAT 
               
               
                 |TEAD4_1 
                   
                   
               
               
                   
               
               
                 ZNF589_1 
                 CCAGGGTATCAGCCG 
                 CGGCTGATACCCTGG 
               
               
                   
               
               
                 NANOG_disc3 
                 CCACAGCAGG 
                 CCTGCTGTGG 
               
               
                   
               
               
                 FOXD1_FOXD3_f1_HocoMoco 
                 AAACAAACA 
                 TGTTTGTTT 
               
               
                   
               
               
                 CTCF_AG09319_CTCF_UW_ChIP-seq 
                 GCCACCAGAGGGCGC 
                 GCGCCCTCTGGTGGC 
               
               
                   
               
               
                 CEBPB_disc2 
                 AGCCAATCA 
                 TGATTGGCT 
               
               
                   
               
               
                 CUX1_V$CLOX_01_Transfac|CUX1_V$CDP_02_Transfac|C 
                 AAAATAATCGATATA 
                 TATATCGATTATTTT 
               
               
                 UX1_2 
                   
                   
               
               
                   
               
               
                 MEIS1_pTH6524_PBM 
                 AAATGACAGCTC 
                 GAGCTGTCATTT 
               
               
                   
               
               
                 BARHL2_Barhl1_3_SELEX|BARHL1_4 
                 CATTTAGCAGCAATTA 
                 TAATTGCTGCTAAATG 
               
               
                   
               
               
                 HOXC9_1 
                 ATAATTAATGACCTCC 
                 GGAGGTCATTAATTAT 
               
               
                   
               
               
                 BHLHE40_known1 
                 CCGTCACGTGACCA 
                 TGGTCACGTGACGG 
               
               
                   
               
               
                 PBX3_PBX3_f2_HocoMoco 
                 CCAGCCAATCAGAG 
                 CTCTGATTGGCTGG 
               
               
                   
               
               
                 RFX8_GM12878_RFX5_Stanford_ChIP-seq 
                 CCTAGCAACAGGTGA 
                 TCACCTGTTGCTAGG 
               
               
                   
               
               
                 TCF4_HLH4C_da_SANGER_5_FBgn0000413_B1H|NHLH2_ 
                 AAAAACACCTGCGCC 
                 GGCGCAGGTGTTTTT 
               
               
                 HLH4C_da_SANGER_5_FBgn0011277_B1H 
                   
                   
               
               
                   
               
               
                 MAX_HUVEC_MAX_Stanford_ChIP-seq 
                 GGCCACGTGACCC 
                 GGGTCACGTGGCC 
               
               
                   
               
               
                 NR5A1_MA0505.1_ChIP-seq 
                 AAGTTCAAGGTCAGC 
                 GCTGACCTTGAACTT 
               
               
                   
               
               
                 SP9_pTH5422_PBM 
                 GTACCCTA 
                 TAGGGTAC 
               
               
                   
               
               
                 ATOH7_ato_da_SANGER_5_3_FBgn0010433_B1H|TCF4_at 
                 CCACCTGCC 
                 GGCAGGTGG 
               
               
                 o_da_SANGER_5_3_FBgn0000413_B1H 
                   
                   
               
               
                   
               
               
                 EN1_3 
                 GCATTAATTAGTTCGC 
                 GCGAACTAATTAATGC 
               
               
                   
               
               
                 CIC_Cic_3454_PBM 
                 AGTCAGCAAA 
                 TTTGCTGACT 
               
               
                   
               
               
                 MSX1_MSX1_3_SELEX|MSX1_5 
                 CCAATTAG 
                 CTAATTGG 
               
               
                   
               
               
                 CTCF_Fibrobl_CTCF_UT-A_ChIP-seq 
                 CGGCCACCAGGGGGC 
                 GCCCCCTGGTGGCCG 
               
               
                   
               
               
                 NHLH2_V$HEN1_02_Transfac|NHLH1_1 
                 AGGGGACGCAGCTGCG 
                 AGGGGGCGCAGCTGCG 
               
               
                   
               
               
                   
                 CCCCCT 
                 TCCCCT 
               
               
                   
               
               
                 SOX13_V$SOX5_01_Transfac|SOX5_1 
                 GTATTGTTAA 
                 TTAACAATAC 
               
               
                   
               
               
                 USF1_V$USF_01_Transfac|MYC_known3 
                 AGATCACGTGATCT 
                 AGATCACGTGATCT 
               
               
                   
               
               
                 SOX15_SOX15_a_HocoMoco 
                 AACAATG 
                 CATTGTT 
               
               
                   
               
               
                 IRF4_GM12878_IRF4_HudsonAlpha_ChIP-seq 
                 AATGTGGAAATGAGTCA 
                 CTGACTCATTTCCACATT 
               
               
                   
                 G 
                   
               
               
                   
               
               
                 NKX2-5_NKX25_f1_HocoMoco|NKX2- 
                 CACTTGA 
                 TCAAGTG 
               
               
                 5_V$NKX25_01_Transfac|NKX2-5_1 
                   
                   
               
               
                   
               
               
                 SOX13_Sox13_1718_PBM 
                 GAACAATA 
                 TATTGTTC 
               
               
                   
               
               
                 ZKSCAN1_pTH2280_PBM 
                 ATGTGCACAT 
                 ATGTGCACAT 
               
               
                   
               
               
                 VENTX_VENTX_1_SELEX|VENTX_1 
                 ACCGATTAG 
                 CTAATCGGT 
               
               
                   
               
               
                 MYC_K562_CMYC_UT-A_ChIP-seq 
                 GCCACGTGGCC 
                 GGCCACGTGGC 
               
               
                   
               
               
                 UNCX_1 
                 CATAATTAATTAACGCG 
                 CGCGTTAATTAATTATG 
               
               
                   
               
               
                 SREBF2_SRBP1_f2_HocoMoco 
                 CTCACCCCACC 
                 GGTGGGGTGAG 
               
               
                   
               
               
                 NR2E1_dsf_SANGER_5_FBgn0015381_B1H|NR2E1_tll_NA 
                 AAAAGTCAAA 
                 TTTGACTTTT 
               
               
                 R_FBgn0003720_B1H|NR2E1_MA0459.1_B1H 
                   
                   
               
               
                   
               
               
                 HNF1A_Tcf1_2666_PBM|HMBOX1_Hmbox1_2674_PBM 
                 CTAGTTAA 
                 TTAACTAG 
               
               
                   
               
               
                 CXXC1_CXXC1_si_HocoMoco 
                 CGTTGGC 
                 GCCAACG 
               
               
                   
               
               
                 PAX6_V$PAX6_01_Transfac|PAX6_1 
                 AATTTTCACGCATGAGT 
                 GTGAACTCATGCGTGAA 
               
               
                   
                 TCAC 
                 AATT 
               
               
                   
               
               
                 NR2F2_pTH6747_PBM 
                 AGGGGTCA 
                 TGACCCCT 
               
               
                   
               
               
                 STAT3_HeLa-53_STAT3_Stanford_ChIP-seq 
                 CATTTCCCGGAAG 
                 CTTCCGGGAAATG 
               
               
                   
               
               
                 ATF3_known1 
                 CTCTGACGTCACCC 
                 GGGTGACGTCAGAG 
               
               
                   
               
               
                 TCF7L2_known2 
                 CTTTGA 
                 TCAAAG 
               
               
                   
               
               
                 T_MA0009.1_SELEX|T_2 
                 CTAGGTGTGAA 
                 TTCACACCTAG 
               
               
                   
               
               
                 FOXD1_FOXJ2_f1_HocoMoco 
                 TAAATAAACA 
                 TGTTTATTTA 
               
               
                   
               
               
                 FOSL1_HeLa-S3_CFOS_Stanford_ChIP-seq 
                 GATGACTCACACA 
                 TGTGTGAGTCATC 
               
               
                   
               
               
                 NFATC1_NFAC4_a_HocoMoco 
                 AAATTTTCCT 
                 AGGAAAATTT 
               
               
                   
               
               
                 TFAP2A_Tcfap2c_2912_PBM 
                 CGCCCGAGGC 
                 GCCTCGGGCG 
               
               
                   
               
               
                 SOX2_1 
                 CCTTTGTTATGCAAA 
                 TTTGCATAACAAAGG 
               
               
                   
               
               
                 TBX1_TBX1_1_SELEX|TBX1_1 
                 AGGTGTGAAAAAAGGT 
                 TCACACCTTTTTTCACAC 
               
               
                   
                 GTGA 
                 CT 
               
               
                   
               
               
                 BHLHE40_known2 
                 GGAAGAGTCACGTGAC 
                 GTATTGGTCACGTGACT 
               
               
                   
                 CAATAC 
                 CTTCC 
               
               
                   
               
               
                 EGR3_V$NGF1C_01_Transfac|EGR4_1 
                 ATGCGTGGGCGG 
                 CCGCCCACGCAT 
               
               
                   
               
               
                 ATOH7_ato_da_SANGER_5_2_FBgn0010433_B1H|TCF4_at 
                 ACATCTGTC 
                 GACAGATGT 
               
               
                 o_da_SANGER_5_2_FBgn0000413_B1H|OLIG2_0li_da_SA 
                   
                   
               
               
                 NGER_5_3_FBgn0032651_B1H|TCF4_Oli_da_SANGER_5_3 
                   
                   
               
               
                 FBgn0000413_B1H 
                   
                   
               
               
                   
               
               
                 REST_U87_N RSF_HudsonAlpha_ChIP-seq 
                 ACCATGGACAGCGCC 
                 GGCGCTGTCCATGGT 
               
               
                   
               
               
                 RXRA_known6 
                 AAAGGTCAAAGGTCAA 
                 GTTGACCTTTGACCTTT 
               
               
                   
                 C 
                   
               
               
                   
               
               
                 ETV6_ETV7_si_HocoMoco 
                 GCCACAGGAAGTAACA 
                 GTGTTACTTCCTGTGGC 
               
               
                   
                 C 
                   
               
               
                   
               
               
                 TCF4_Oli_da_SANGER_5_1_FBgn0000413_B1H|OLIG2_Oli 
                 CACCATATGGC 
                 GCCATATGGTG 
               
               
                 _da_SANGER_5_1_FBgn0032651_B1H 
                   
                   
               
               
                   
               
               
                 RUNX2_3 
                 ACCACAAA 
                 TTTGTGGT 
               
               
                   
               
               
                 STAT_disc6 
                 AGGCAGGAA 
                 TTCCTGCCT 
               
               
                   
               
               
                 NR5A1_NR5A2_f1_HocoMoco 
                 TGGCCTTGAA 
                 TTCAAGGCCA 
               
               
                   
               
               
                 NKX2-6_MA0247.2_ChIP-chip 
                 CCACTTGAAA 
                 TTTCAAGTGG 
               
               
                   
               
               
                 ZFY_ZFX_a_HocoMoco 
                 GCCGAGGCCTGGGGCC 
                 GGGGGCCCCAGGCCTC 
               
               
                   
                 CCC 
                 GGC 
               
               
                   
               
               
                 CTCF_SAEC_CTCF_UW_ChIP- 
                 CCACCAGGGGGCG 
                 CGCCCCCTGGTGG 
               
               
                 seq|CTCF_HPF_CTCF_UW_ChIP-seq 
                   
                   
               
               
                   
               
               
                 NHLH1_2 
                 ATGGGGCGCAGCTGCG 
                 GAGGGGCGCAGCTGCG 
               
               
                   
                 CCCCTC 
                 CCCCAT 
               
               
                   
               
               
                 E2F6_K562_E2F6_HudsonAlpha_ChIP-seq 
                 CTTCCCGCCCC 
                 GGGGCGGGAAG 
               
               
                   
               
               
                 CTCF_H1-hESC_CTCF_Broad_ChIP-seq|CTCF_MCF- 
                 GCCACCAGGGGGCGC 
                 GCGCCCCCTGGTGGC 
               
               
                 7_CTCF_UT-A_ChIP-seq|CTCF_N HEK_CTCF_Broad_ChIP- 
                   
                   
               
               
                 seq|CTCF_H1-hESC_CTCF_HudsonAlpha_ChIP- 
                   
                   
               
               
                 seq|CTCF_GM12874_CTCF_UW_ChIP- 
                   
                   
               
               
                 seq|CTCF_GM12872_CTCF_UW_ChIP-seq|CTCF_Caco- 
                   
                   
               
               
                 2_CTCF_UW_ChIP-seq|CTCF_GM12865_CTCF_UW_ChIP- 
                   
                   
               
               
                 seq|CTCF_HA-sp_CTCF_UW_ChIP- 
                   
                   
               
               
                 seq|CTCF_K562_CTCF_UT-A_ChIP- 
                   
                   
               
               
                 seq|CTCF_GM12875_CTCF_UW_ChIP- 
                   
                   
               
               
                 seq|CTCF_AoAF_CTCF_UW_ChIP- 
                   
                   
               
               
                 seq|CTCF_K562_CTCF_UW_ChIP- 
                   
                   
               
               
                 seq|CTCF_HRE_CTCF_UW_ChIP- 
                   
                   
               
               
                 seq|CTCF_BJ_CTCF_UW_ChIP-seq|SMC3_disc1 
                   
                   
               
               
                   
               
               
                 POU3F3_V$OCT1_05_Transfac|POU2F2_known5 
                 AATATGCAAATTAT 
                 ATAATTTGCATATT 
               
               
                   
               
               
                 GMEB2_pTH9211_PBM 
                 TACGTAA 
                 TTACGTA 
               
               
                   
               
               
                 ESR2_HepG2_ERRA_Stanford_ChIP-seq 
                 GGCCCAAGGTCACA 
                 TGTGACCTTGGGCC 
               
               
                   
               
               
                 DLX1_DLX3_do_HocoMoco 
                 GATAATTACA 
                 TGTAATTATC 
               
               
                   
               
               
                 REST_disc7 
                 ACAGCGTC 
                 GACGCTGT 
               
               
                   
               
               
                 POU1F1_POU1F1_2_SELEX|POU1F1_5 
                 AATATGCAAATTAG 
                 CTAATTTGCATATT 
               
               
                   
               
               
                 NR6A1_V$GCNF_01_Transfac|N R6A1_1 
                 CTCAAGTTCAAGTTCAC 
                 GGTGAACTTGAACTTGA 
               
               
                   
                 C 
                 G 
               
               
                   
               
               
                 FOXD1_FOXC2_1_SELEX|FOXD1_FOXC1_2_SELEX|FOXC1_ 
                 TGTAAATATTGACA 
                 TGTCAATATTTACA 
               
               
                 4|FOXC2_1 
                   
                   
               
               
                   
               
               
                 JUN_MA0488.1_ChIP-seq 
                 AAGATGATGTCAT 
                 ATGACATCATCTT 
               
               
                   
               
               
                 ZIC2_2|Z1C3_2 
                 ACCCCCCCGGGGGGG 
                 CCCCCCCGGGGGGGT 
               
               
                   
               
               
                 GATA2_pnr_SANGER_5_FBgn0003117_B1H 
                 CAGATAA 
                 TTATCTG 
               
               
                   
               
               
                 MEF2_disc1 
                 TGCTAAAAATAGCAA 
                 TTGCTATTTTTAGCA 
               
               
                   
               
               
                 MEF2B_GM12878_MEF2C_HudsonAlpha_ChIP-seq 
                 ATGCCAAAAATAGCA 
                 TGCTATTTTTGGCAT 
               
               
                   
               
               
                 BARHL2_BARHL2_3_SELEX|BARHL2_4 
                 CATTTAACACCAATTA 
                 TAATTGGTGTTAAATG 
               
               
                   
               
               
                 RFX8_RFX2_1_SELEX|RFX8_RFX5_1_SELEX|RFX8_RFX3_1_ 
                 CGTTGCCATGGCAACG 
                 CGTTGCCATGGCAACG 
               
               
                 SELEX|RFX8_RFX4_1_SELEX|RFX2_1|RFX3_2|RFX5_known 
                   
                   
               
               
                 6|RFX5_known8 
                   
                   
               
               
                   
               
               
                 RFX8_Rfx3_1_SELEX|RFX8_Rfx2_1_SELEX|RFX8_YLR176C_ 
                 CGTTGCCATGGCAACC 
                 GGTTGCCATGGCAACG 
               
               
                 1478_DeBoer11|RFX2_3|RFX3_4 
                   
                   
               
               
                   
               
               
                 ZEB1_V$AREB6_04_Transfac|ZEB1_known4 
                 CTGAAACAG 
                 CTGTTTCAG 
               
               
                   
               
               
                 GSX2_1 
                 AGGTTAATTAGCTGAT 
                 ATCAGCTAATTAACCT 
               
               
                   
               
               
                 STAT5B_STA5B_f1_HocoMoco 
                 AATTCCCAGAAAA 
                 TTTTCTGGGAATT 
               
               
                   
               
               
                 GATA2_GATA3_2_SELEX|GATA_known20 
                 AGATAAGG 
                 CCTTATCT 
               
               
                   
               
               
                 GATA2_GATA3_1_SELEX|GATA2_GATA5_1_SELEX|GATA2_ 
                 AGATAAGA 
                 TCTTATCT 
               
               
                 MA0037.2_ChIP- 
                   
                   
               
               
                 seq|GATA2_GATA4_1_SELEX|GATA_known19|GATA_kno 
                   
                   
               
               
                 wn21|GATA_known22 
                   
                   
               
               
                   
               
               
                 CTCF_Osteobl_CTCF_Broad_ChIP-seq 
                 AGCGCCCCCTGGTGGCC 
                 TGGCCACCAGGGGGCG 
               
               
                   
                 A 
                 CT 
               
               
                   
               
               
                 RORB_RORA_f1_HocoMoco 
                 AAAACTAGGTCA 
                 TGACCTAGTTTT 
               
               
                   
               
               
                 GATA_disc5 
                 AGCCAAACC 
                 GGTTTGGCT 
               
               
                   
               
               
                 CACBP_1 
                 CCCACCCTC 
                 GAGGGTGGG 
               
               
                   
               
               
                 STAT_known16 
                 CTTCCTGGAA 
                 TTCCAGGAAG 
               
               
                   
               
               
                 IRF8_IRF8_si_HocoMoco 
                 CAGTTTCAGTTTCTC 
                 GAGAAACTGAAACTG 
               
               
                   
               
               
                 HOXD12_HOXD12_1_SELEX|HOXD12_HOXC12_1_SELEX|H 
                 GTAATAAAA 
                 TTTTATTAC 
               
               
                 OXD12_HOXD12_4_SELEX|HOXC12_21HOXD12_2 
                   
                   
               
               
                   
               
               
                 HOXB13_Hoxd13_2356_PBM|HOXB13_Hoxa13_3126_PB 
                 CTCATAAAA 
                 TTTTATGAG 
               
               
                 M 
                   
                   
               
               
                   
               
               
                 AIRE_2 
                 GGTTATTAATTGGTTAT 
                 TAACCAATATAACCAAT 
               
               
                   
                 ATTGGTTA 
                 TAATAACC 
               
               
                   
               
               
                 SMC3_disc4 
                 CTGGTGGC 
                 GCCACCAG 
               
               
                   
               
               
                 MYC_known1 
                 CGACCACGTGGTCA 
                 TGACCACGTGGTCG 
               
               
                   
               
               
                 BHLHE40_BHLHB3_1_SELEX|BHLHE41_1 
                 GGCACGTGAC 
                 GTCACGTGCC 
               
               
                   
               
               
                 FOXD1_I$CROC_01_Transfac 
                 AAAAATAAATATAAGG 
                 CCTTATATTTATTTTT 
               
               
                   
               
               
                 TBX3_pTH9182_PBM1TBX3_pTH9244_PBM 
                 GAGGTGTCAA 
                 TTGACACCTC 
               
               
                   
               
               
                 CEBPA_V$CEBPB_01_Transfac|CEBPB_known1 
                 ACATTGCACAATCT 
                 AGATTGTGCAATGT 
               
               
                   
               
               
                 MAX_dm_Max_SANGER_10_FBgn0017578_B1H 
                 ACCACGTGTC 
                 GACACGTGGT 
               
               
                   
               
               
                 FOSL1_HUVEC_CFOS_UCD_ChIP-seq 
                 ATGACTCACTC 
                 GAGTGAGTCAT 
               
               
                   
               
               
                 SOX11_Sox4_2941_PBM 
                 AGAACAATG 
                 CATTGTTCT 
               
               
                   
               
               
                 GLI_1 
                 CCTGGGTGGTCC 
                 GGACCACCCAGG 
               
               
                   
               
               
                 STAT1_V$STAT1_01_Transfac|STAT_known2 
                 CCCCATTTCCCGGAAAT 
                 GGTGATTTCCGGGAAAT 
               
               
                   
                 CACC 
                 GGGG 
               
               
                   
               
               
                 HOXC10_Hoxa9_2622_PBM 
                 GCCATAAA 
                 TTTATGGC 
               
               
                   
               
               
                 GMEB2_GMEB2_1_SELEX|GMEB2_1 
                 GTACGTAA 
                 TTACGTAC 
               
               
                   
               
               
                 ESR2_ESR1_do_HocoMoco 
                 AGGTCACGGTGACCTG 
                 CCCAGGTCACCGTGACC 
               
               
                   
                 GG 
                 T 
               
               
                   
               
               
                 HOXA4_GSX1_1_SELEX1GSX1_1 
                 CCTAATTAAA 
                 TTTAATTAGG 
               
               
                   
               
               
                 PITX2_Pitx1_2312_PBM|DMBX1_Dmbx1_2277_PBM 
                 GGGGATTAA 
                 TTAATCCCC 
               
               
                   
               
               
                 RORB_pTH6142_PBM|NR2F2_Nr2f2_2192_PBM|NR2F2_p 
                 GAGGTCAC 
                 GTGACCTC 
               
               
                 TH3811_PBM|RARG_Rara_1051_PBM 
                   
                   
               
               
                   
               
               
                 NR2C2_pTH3466_PBM 
                 GAGGTCAA 
                 TTGACCTC 
               
               
                   
               
               
                 ETV5_HEK293b_ELK4_UCD_ChIP-seq 
                 CCACTTCCGG 
                 CCGGAAGTGG 
               
               
                   
               
               
                 CREB3L2_CREB3L1_6_SELEX|CREB3L2_CREB3L1_4_SELEX| 
                 ATGCCACGTCATCA 
                 TGATGACGTGGCAT 
               
               
                 CREB3L2_CREB3L1_1_SELEX|CREB3L1_1|CREB3L1_4 
                   
                   
               
               
                   
               
               
                 ATF5_Atf4_1_SELEX|ATF4_3 
                 AGGATGATGCAATC 
                 GATTGCATCATCCT 
               
               
                   
               
               
                 FOXO6_FOXO1_si_HocoMoco 
                 AAAAAGTAAACAAACC 
                 GGTTTGTTTACTTTTT 
               
               
                   
               
               
                 ONECUT3_HNF6_f1_HocoMoco 
                 AAAAAATCAATAAA 
                 TTTATTGATTTTTT 
               
               
                   
               
               
                 BACH1_V$BACH2_01_Transfac|BACH2_1 
                 CGTGAGTCATC 
                 GATGACTCACG 
               
               
                   
               
               
                 HOXA10_1 
                 TAGGTAATAAAATTCA 
                 TGAATTTTATTACCTA 
               
               
                   
               
               
                 TFAP2A_AP2C_f1_HocoMoco 
                 GCCCCAGGC 
                 GCCTGGGGC 
               
               
                   
               
               
                 CRX_2 
                 AGGCTAATCCCCAACG 
                 CGTTGGGGATTAGCCT 
               
               
                   
               
               
                 HOXD13_1 
                 AGAATTTTATTGGTAG 
                 CTACCAATAAAATTCT 
               
               
                   
               
               
                 HIF1A::ARNT_1 
                 GCACGTCC 
                 GGACGTGC 
               
               
                   
               
               
                 SOX2_SOX21_1_SELEX|SOX21_2 
                 AACAATGGTAGTGTT 
                 AACACTACCATTGTT 
               
               
                   
               
               
                 ZNF350_ZN350_f1_HocoMoco 
                 ACGGGGCGCAGGGATT 
                 GGGCAACAAATCCCTGC 
               
               
                   
                 TGTTGCCC 
                 GCCCCGT 
               
               
                   
               
               
                 HOXC5_ftz_FlyReg_FBgn0001077_B1H 
                 GGCAATTA 
                 TAATTGCC 
               
               
                   
               
               
                 YY1_disc3 
                 CGCCGCCGCC 
                 GGCGGCGGCG 
               
               
                   
               
               
                 TFAP4_V$AP4_C15_Transfac|TFAP4_V$AP4_C16_Transfac|T 
                 ACCAGCTGAG 
                 CTCAGCTGGT 
               
               
                 FAP4_2 
                   
                   
               
               
                   
               
               
                 TFAP2A_AP2B_f1_HocoMoco 
                 GCCCCCGGGC 
                 GCCCGGGGGC 
               
               
                   
               
               
                 ZNF350_1 
                 AAAGGGCTGCGGCCC 
                 GGGCCGCAGCCCTTT 
               
               
                   
               
               
                 LCOR_pTH9220_PBM 
                 AATTTTGGCA 
                 TGCCAAAATT 
               
               
                   
               
               
                 YBX1_YBOX1_f2_HocoMoco 
                 GGCCAATCCCC 
                 GGGGATTGGCC 
               
               
                   
               
               
                 JUN_K562_JUNB_UChicago_ChIP-seq 
                 AAGGATGAGTCACCG 
                 CGGTGACTCATCCTT 
               
               
                   
               
               
                 USF1_H1-hESC_USF2_Stanford_ChIP-seq 
                 CGCGGTCACGTGACCC 
                 GGGTCACGTGACCGCG 
               
               
                   
               
               
                 DMRTA1_1 
                 AAATTGTTACATT 
                 AATGTAACAATTT 
               
               
                   
               
               
                 LCOR_pTH8649_PBM 
                 AATTTTGGCT 
                 AGCCAAAATT 
               
               
                   
               
               
                 IKZF1_V$LYF1_01_Transfac|IKZF1_2 
                 TCTCCCAAA 
                 TTTGGGAGA 
               
               
                   
               
               
                 SPIC_K562_PU1_HudsonAlpha_ChIP- 
                 AAAAAGAGGAAGTGG 
                 CCACTTCCTCTTTTT 
               
               
                 seq|SPIC_SRP005406_SPI1_ChIP-seq 
                   
                   
               
               
                   
               
               
                 CTCF_MA0139.1_ChIP- 
                 TAGCGCCCCCTGGTGGC 
                 TGGCCACCAGGGGGCG 
               
               
                 seq|CTCF_CTCF_f2_HocoMoco|CTCF_known1 
                 CA 
                 CTA 
               
               
                   
               
               
                 ZBTB6_ZBTB6_si_HocoMoco 
                 AGATGATAGAGCC 
                 GGCTCTATCATCT 
               
               
                   
               
               
                 POU4F1_pTH8341_PBM 
                 ATATGCAT 
                 ATGCATAT 
               
               
                   
               
               
                 GATA2_MA0036.2_ChIP-seq 
                 ACAGATAAGAATCT 
                 AGATTCTTATCTGT 
               
               
                   
               
               
                 ESR2_Mv67_ChIP-seq 
                 CCAAGGTCAC 
                 GTGACCTTGG 
               
               
                   
               
               
                 NFIL3_pTH3041_PBM 
                 ACGTAATA 
                 TATTACGT 
               
               
                   
               
               
                 ASCL2_1 
                 CAGGAGCAGCTGCTGA 
                 CTCAGCAGCTGCTCCTG 
               
               
                   
                 G 
                   
               
               
                   
               
               
                 RFX5_disc1 
                 CCCTAGCAAC 
                 GTTGCTAGGG 
               
               
                   
               
               
                 RFX8_RFX3_f1_HocoMoco 
                 GGTTGCCATGGTAA 
                 TTACCATGGCAACC 
               
               
                   
               
               
                 GBX2_Unpg_Cell_FBgn0015561_B1H 
                 CTTAATTA 
                 TAATTAAG 
               
               
                   
               
               
                 TLX3_TLX1_J2_HocoMoco 
                 CCTTGGCAACTTGCCAG 
                 CTGGCAAGTTGCCAAGG 
               
               
                   
               
               
                 CUX1_CUX1_f1_HocoMoco 
                 AGGGGGATCGATGG 
                 CCATCGATCCCCCT 
               
               
                   
               
               
                 GATA2_Gata3_1024_PBM 
                 CTTATCTCTA 
                 TAGAGATAAG 
               
               
                   
               
               
                 KLF4_MA0493.1_ChIP-seq 
                 GGCCACACCCA 
                 TGGGTGTGGCC 
               
               
                   
               
               
                 EVX2_EVX1_1_SELEX|EVX2_EVX2_1_SELEX|EVX1_2|EVX2 
                 GCTAATTACC 
                 GGTAATTAGC 
               
               
                 2 
                   
                   
               
               
                   
               
               
                 OSR2_1 
                 ATGTACAGTAGCAAAG 
                 CTTTGCTACTGTACAT 
               
               
                   
               
               
                 FOXD1_Mv69_ChIP-seq 
                 CTAAGTAAACAAG 
                 CTTGTTTACTTAG 
               
               
                   
               
               
                 NKX2-5_pTH5945_PBM 
                 AACCACTTAAG 
                 CTTAAGTGGTT 
               
               
                   
               
               
                 LHX6_1 
                 GAGCGTTAATTAATGTA 
                 TACATTAATTAACGCTC 
               
               
                   
               
               
                 NFKB1_NFKB1_f1_HocoMoco|NFKB_known8 
                 GGGGAATCCCC 
                 GGGGATTCCCC 
               
               
                   
               
               
                 MXI1_Mv93_ChIP-seq 
                 GGTTGCCATGGCGAC 
                 GTCGCCATGGCAACC 
               
               
                   
               
               
                 RARG_Rarg_3_SELEX|RARG_9 
                 AAGGTCACGAAAGGTC 
                 TGACCTTTCGTGACCTT 
               
               
                   
                 A 
                   
               
               
                   
               
               
                 HOXA3_2 
                 GTTAATTACCTCCA 
                 TGGAGGTAATTAAC 
               
               
                   
               
               
                 MYOD1_Myf6_3824_PBM 
                 ACACCTGTC 
                 GACAGGTGT 
               
               
                   
               
               
                 HNF4G_HNF4A_6_SELEX|HNF4_known21 
                 GGGTCCAAAGGTCAA 
                 TTGACCTTTGGACCC 
               
               
                   
               
               
                 RELA_GM10847_NFKB_Stanford_ChIP-seq 
                 AGGGGATTTCCCAG 
                 CTGGGAAATCCCCT 
               
               
                   
               
               
                 TATA_known4 
                 GTATAAA 
                 TTTATAC 
               
               
                   
               
               
                 FOXD1_FOXK1_1_SELEX|FOXK1_2 
                 ATTGTGTCCG 
                 CGGACACAAT 
               
               
                   
               
               
                 ATF5_pTH1014_PBM 
                 AGTTACGTAATTG 
                 CAATTACGTAACT 
               
               
                   
               
               
                 ZBTB7C_ZBTB7C_1_SELEX|ZBTB7B_ZBTB76_1_SELEX|ZBTB 
                 GCGACCACCGAA 
                 TTCGGTGGTCGC 
               
               
                 7A_known4|ZBTB7C_1 
                   
                   
               
               
                   
               
               
                 RARG_Rarg_1_SELEX|RARG_7 
                 AAGGTCAAAAGGTCAA 
                 TTGACCTTTTGACCTT 
               
               
                   
               
               
                 SOX10_2 
                 ACAAAG 
                 CTTTGT 
               
               
                   
               
               
                 FOXO6_FOXO4_1_SELEX|FOXO6_FOXO1_2_SELEX|FOXO6 
                 GTAAACATGTTTAC 
                 GTAAACATGTTTAC 
               
               
                 FOXO3_1_SELEX|FOXO6_FOXO6_1_SELEX|FOXO1_4|FOX 
                   
                   
               
               
                 O3_4|FOXO4_3|FOXO6_1 
                   
                   
               
               
                   
               
               
                 BCL_disc9 
                 CTGCACCCGCTGCC 
                 GGCAGCGGGTGCAG 
               
               
                   
               
               
                 HDAC2_disc1 
                 CAGATAAGGC 
                 GCCTTATCTG 
               
               
                   
               
               
                 USF2_MA0526.1_ChIP-seq 
                 GGTCACATGAC 
                 GTCATGTGACC 
               
               
                   
               
               
                 FOSL1_pTH5108_PBM|ATF3_pTH5018_PBM 
                 ACGTCATC 
                 GATGACGT 
               
               
                   
               
               
                 ESRRG_ERR_SANGER_5_FBgn0035849_B1H|ESRRG_pTH38 
                 CAAGGTCA 
                 TGACCTTG 
               
               
                 41_PBM|NR5A1_pTH3468_PBM|NR5A1_Mw160_ChIP- 
                   
                   
               
               
                 seq|NR5A1_1 
                   
                   
               
               
                   
               
               
                 AHR_2 
                 CTTGCGTGAGA 
                 TCTCACGCAAG 
               
               
                   
               
               
                 E2F3_E2F2_1022_PBM 
                 ACGCGCCAAA 
                 TTTGGCGCGT 
               
               
                   
               
               
                 PAX6_4 
                 GTCAATTAATTAATCA 
                 TGATTAATTAATTGAC 
               
               
                   
               
               
                 HES4_pTH5059_PBM|HES7_pTH5260_PBM 
                 GACGCGTGCC 
                 GGCACGCGTC 
               
               
                   
               
               
                 BARX1_BARX1_2_SELEX|BARX1_3 
                 CTAATTGC 
                 GCAATTAG 
               
               
                   
               
               
                 HESX1_HESX1_f1_HocoMoco 
                 AGGCCACGTGCCGGAT 
                 ATCCGGCACGTGGCCT 
               
               
                   
               
               
                 SRF_V$SRF_C16_Transfac|SRF_known2 
                 GGCCATATAAGGAC 
                 GTCCTTATATGGCC 
               
               
                   
               
               
                 ZNF410_ZNF410_1_SELEX|ZNF410_2 
                 GAGTATTATGGGATGG 
                 TCCATCCCATAATACTC 
               
               
                   
                 A 
                   
               
               
                   
               
               
                 NKX3-1_3 
                 ATCCTTAAGTGGTTAAG 
                 CTTAACCACTTAAGGAT 
               
               
                   
               
               
                 ETS_known4 
                 ACAGGAAGTGATTGC 
                 GCAATCACTTCCTGT 
               
               
                   
               
               
                 NR4A2_NR4A2_3_SELEX|NR4A_known4 
                 TGACCTTTAAA 
                 TTTAAAGGTCA 
               
               
                   
               
               
                 HOXC10_HOXC11_4_SELEX|HOXC10_HOXC11_2_SELEX|H 
                 AGCAATAAAAA 
                 TTTTTATTGCT 
               
               
                 OXC11_3|HOXC11_5 
                   
                   
               
               
                   
               
               
                 TBX1_TBX1_2_SELEX|TBX1_TBX20_2_SELEX|TBX22_TBX15 
                 AGGTGTGAAATTCACAC 
                 AGGTGTGAATTTCACAC 
               
               
                 _1_SELEX|TBX15_1|TBX1_2|TBX20_2 
                 CT 
                 CT 
               
               
                   
               
               
                 BCL_disc5 
                 CTGATAAG 
                 CTTATCAG 
               
               
                   
               
               
                 POU2F2_MA0507.1_ChIP-seq 
                 ATATGCAAATGAA 
                 TTCATTTGCATAT 
               
               
                   
               
               
                 IRX3_Irx3_0920_PBM 
                 ATCATGTAAT 
                 ATTACATGAT 
               
               
                   
               
               
                 MYB_6 
                 AAAATAACGGTTTCCAT 
                 ATGGAAACCGTTATTTT 
               
               
                   
               
               
                 POU3F3_GM12891_POU2F2_HudsonAlpha_ChIP- 
                 ATATGCAAATGAG 
                 CTCATTTGCATAT 
               
               
                 seq|POU3F3_GM12891_OCT2_HudsonAlpha_ChIP-seq 
                   
                   
               
               
                   
               
               
                 GSC_GSC2_1_SELEX|GSC2_1 
                 CCTAATCCGC 
                 GCGGATTAGG 
               
               
                   
               
               
                 SRF_known5 
                 CATCTCCTTATATGG 
                 CCATATAAGGAGATG 
               
               
                   
               
               
                 LHX1_pTH6478_PBM 
                 CTAATTACGC 
                 GCGTAATTAG 
               
               
                   
               
               
                 AR_NR3C2_1_SELEX|NR3C2_1 
                 GGGAACACAATGTTCCC 
                 GGGAACATTGTGTTCCC 
               
               
                   
               
               
                 KLF4_MA0039.2_ChIP-seq|KLF4_1 
                 GCCCCACCCA 
                 TGGGTGGGGC 
               
               
                   
               
               
                 LIN54_pTH8399_PBM 
                 ATTCAAAT 
                 ATTTGAAT 
               
               
                   
               
               
                 BCL6_SRP001843_Bc16_IgG_LPSstim_ChIP-seq 
                 AGGAGAGAAGGGGAA 
                 TCTCCCTTTCTTCCCTTCC 
               
               
                   
                 GGGAAGAAAGGGAGA 
                 CCTTCTCTCCT 
               
               
                   
               
               
                 RREB1_V$RREB1_01_Transfac|RREB1_1 
                 CCCCAAACCACCCC 
                 GGGGTGGTTTGGGG 
               
               
                   
               
               
                 SOX7_1 
                 AATAAAGAACAATAGAA 
                 TGAAATTCTATTGTTCTT 
               
               
                   
                 TTTCA 
                 TATT 
               
               
                   
               
               
                 HIC1_5 
                 ATGCCAACC 
                 GGTTGGCAT 
               
               
                   
               
               
                 BSX_1 
                 CAGGTAATTACCTCAG 
                 CTGAGGTAATTACCTG 
               
               
                   
               
               
                 AP1_disc8 
                 AAGGAAATGA 
                 TCATTTCCTT 
               
               
                   
               
               
                 POU3F3_POU3F3_1_SELEX|POU3F3_2 
                 AAATTAGCATAAT 
                 ATTATGCTAATTT 
               
               
                   
               
               
                 SRF_known8 
                 TTCCATATATGGAA 
                 TTCCATATATGGAA 
               
               
                   
               
               
                 PURA_PURA_f1_HocoMoco 
                 CCCTGCCCCCCCCTTCC 
                 GGAAGGGGGGGGCAG 
               
               
                   
                   
                 GG 
               
               
                   
               
               
                 HMX2_1|HMX3_2 
                 ACAAGCAATTAAAGAAT 
                 ATTCTTTAATTGCTTGT 
               
               
                   
               
               
                 SCRT2_SCRT2_1_SELEX|SCRT2_1 
                 ATGCAACAGGTGG 
                 CCACCTGTTGCAT 
               
               
                   
               
               
                 C11orf9_pTH8654_PBM|C11orf9_pTH9310_PBM 
                 TGGTACCA 
                 TGGTACCA 
               
               
                   
               
               
                 SOX9_SOX8_7_SELEX|SOX9_SOX8_2_SELEX|SOX8_3|SOX8 
                 ATGAATTGCAGTC 
                 GACTGCAATTCAT 
               
               
                 8 
                   
                   
               
               
                   
               
               
                 SETDB1_disc2 
                 GCGCACGCGC 
                 GCGCGTGCGC 
               
               
                   
               
               
                 PBX3_disc3 
                 AGTGACAGGCCCGCCG 
                 TTGGCCGGCGGGCCTGT 
               
               
                   
                 GCCAA 
                 CACT 
               
               
                   
               
               
                 E2F6_MA0471.1_ChIP-seq|E2F4_MA0470.1_ChIP-seq 
                 CCTTCCCGCCC 
                 GGGCGGGAAGG 
               
               
                   
               
               
                 ATF3_JDP2_4_SELEX|ATF3_Jdp2_2_SELEX|XBP1_XBP1_1_ 
                 GATGACGTCATC 
                 GATGACGTCATC 
               
               
                 SELEX|ATF3_JDP2_2_SELEX|JDP2_3|JDP2_5|JDP2_7|XBP1 
                   
                   
               
               
                 3 
                   
                   
               
               
                   
               
               
                 HOXC5_HXB6_f1_HocoMoco 
                 AATGATTGATGCA 
                 TGCATCAATCATT 
               
               
                   
               
               
                 KLF14_KLF14_1_SELEX|KLF14_1 
                 AAGGGGGCGTGGCC 
                 GGCCACGCCCCCTT 
               
               
                   
               
               
                 FOXK1_1 
                 AAAATGTAAACAAACAG 
                 CTGTTTGTTTACATTTT 
               
               
                   
               
               
                 HOXC10_Hoxc10_1_SELEX|HOXC10_5 
                 GTCATAAAAA 
                 TTTTTATGAC 
               
               
                   
               
               
                 YY1_phol_SOLEXA_5_FBgn0035997_B1H 
                 AACAAAATGGCGGCC 
                 GGCCGCCATTTTGTT 
               
               
                   
               
               
                 ESR2_V$ER_C16_Transfac|ESRRA_known1 
                 ACAGGTCACTGTGACCT 
                 TCAGGTCACAGTGACCT 
               
               
                   
                 GA 
                 GT 
               
               
                   
               
               
                 RARG_Rara_1_SELEX|RARA_8 
                 AAAGGTCAAGAGAGGT 
                 TGACCTCTCTTGACCTTT 
               
               
                   
                 CA 
                   
               
               
                   
               
               
                 EGR1_known5 
                 CCGCCCACGCA 
                 TGCGTGGGCGG 
               
               
                   
               
               
                 CENPB_CENPB_1_SELEX|CENPB_1 
                 CCCGCATACAACGAA 
                 TTCGTTGTATGCGGG 
               
               
                   
               
               
                 BATF_disc2 
                 AAGTTTCAC 
                 GTGAAACTT 
               
               
                   
               
               
                 TCF4_Fer1_da_SANGER_10_FBgn0000413_B1H|PTF1A_Fe 
                 AACACCTGTCA 
                 TGACAGGTGTT 
               
               
                 r1_da_SANGER_10_FBgn0037475_B1H 
                   
                   
               
               
                   
               
               
                 IRF_disc3 
                 AAGTGAAAGTGAAAG 
                 CTTTCACTTTCACTT 
               
               
                   
               
               
                 MNT_pTH4588_PBM 
                 GCACGTGCA 
                 TGCACGTGC 
               
               
                   
               
               
                 RXRA_disc5 
                 AGAGGGCG 
                 CGCCCTCT 
               
               
                   
               
               
                 POU3F3_POU2F1_1_SELEX|POU2F2_known15 
                 AATATGCAAATT 
                 AATTTGCATATT 
               
               
                   
               
               
                 PBX3_disc2 
                 CTGTCACTCA 
                 TGAGTGACAG 
               
               
                   
               
               
                 RELA_GM12891_NFKB_Stanford_ChIP-seq 
                 CTGGGAAATCCCCTA 
                 TAGGGGATTTCCCAG 
               
               
                   
               
               
                 NR2C2_disc1 
                 TGACCCGGAA 
                 TTCCGGGTCA 
               
               
                   
               
               
                 CUX1_CUX2_1_SELEX|CUX2_1 
                 ATCGATAAAATTATCGA 
                 ATCGATAATTTTATCGAT 
               
               
                   
                 T 
                   
               
               
                   
               
               
                 ZNF143_ZN143_si_HocoMoco 
                 GCAAGGCATTCTGGGA 
                 TACACTTCCCAGAATGC 
               
               
                   
                 AGTGTA 
                 CTTGC 
               
               
                   
               
               
                 MSX1_Dr_Cell_FBgn0000492_B1H 
                 GACCAATTA 
                 TAATTGGTC 
               
               
                   
               
               
                 ATF3_K562_ATF3_Harvard_ChIP-seq 
                 GGTGACGTGA 
                 TCACGTCACC 
               
               
                   
               
               
                 MYC_known12 
                 CACGTGC 
                 GCACGTG 
               
               
                   
               
               
                 SP2_disc1 
                 AGCCAATGGGA 
                 TCCCATTGGCT 
               
               
                   
               
               
                 ETV5_HeLa-53_GABP_HudsonAlpha_ChIP-seq 
                 GAACCGGAAGTGGC 
                 GCCACTTCCGGTTC 
               
               
                   
               
               
                 NFY_disc1 
                 ACCAGCCAATCAGAG 
                 CTCTGATTGGCTGGT 
               
               
                   
               
               
                 TFAP4_4 
                 ACCAGCTGC 
                 GCAGCTGGT 
               
               
                   
               
               
                 PAX9_GM12891_PAX5C20_HudsonAlpha_ChIP-seq 
                 CAGCCAAGCGTGACC 
                 GGTCACGCTTGGCTG 
               
               
                   
               
               
                 FOXO6_V$FOXO1_01_Transfac|FOXO1_1 
                 CATAAACAAA 
                 TTTGTTTATG 
               
               
                   
               
               
                 SPI1_known1 
                 AGAGGAAG 
                 CTTCCTCT 
               
               
                   
               
               
                 BARX1_BARX2_si_HocoMoco 
                 CAATTAATGA 
                 TCATTAATTG 
               
               
                   
               
               
                 MAX_MAX_2_SELEX|MYC_known21 
                 ACCACGTGCT 
                 AGCACGTGGT 
               
               
                   
               
               
                 HSF1_HepG2_HSF1_Stanford_ChIP-seq 
                 GGGATTCGAACCCGGG 
                 GTCCCGGGTTCGAATCC 
               
               
                   
                 AC 
                 C 
               
               
                   
               
               
                 RELA_GM18526_NFKB_Stanford_ChIP-seq 
                 AAGGGGATTTCCAAA 
                 TTTGGAAATCCCCTT 
               
               
                   
               
               
                 STAT_known13 
                 CATTTCTA 
                 TAGAAATG 
               
               
                   
               
               
                 VDR_VDR_f1_HocoMoco|RARG_RARA_f1_HocoMoco|RAR 
                 GAGGTCA 
                 TGACCTC 
               
               
                 G_RARGJ1_HocoMoco|RORB_pTH5508_PBM 
                   
                   
               
               
                   
               
               
                 RELA_GM18505_NFKB_Stanford_ChIP-seq 
                 AAGGGGATTTCCAAG 
                 CTTGGAAATCCCCTT 
               
               
                   
               
               
                 FOXP4_FOXP2_si_HocoMoco 
                 AGTAAACAA 
                 TTGTTTACT 
               
               
                   
               
               
                 CTCF_AG10803_CTCF_UW_ChIP-seq 
                 GCCACTAGAGGGC 
                 GCCCTCTAGTGGC 
               
               
                   
               
               
                 NFATC1_NFAC3_f1_HocoMoco 
                 AGTTTTCCA 
                 TGGAAAACT 
               
               
                   
               
               
                 HOXA4_GSX2_1_SELEX|GSX2_2|HOXB5_2 
                 ACTAATTAAA 
                 TTTAATTAGT 
               
               
                   
               
               
                 HOXC5_HOXB5_1_SELEX 
                 ACTAATTAAG 
                 CTTAATTAGT 
               
               
                   
               
               
                 TP73_GSE15704_TP73_vehicle_ChIP-seq 
                 GGACATGCCCAGGCAT 
                 GGCATGCCTGGGCATGT 
               
               
                   
                 GCC 
                 CC 
               
               
                   
               
               
                 FOXJ1_2 
                 AAAGTAAACAAAAATT 
                 AATTTTTGTTTACTTT 
               
               
                   
               
               
                 ZNF740_Zfp740_0925_PBM 
                 CCCCCCCACG 
                 CGTGGGGGGG 
               
               
                   
               
               
                 ZNF740_pTH2857_PBM 
                 CCCCCCCACA 
                 TGTGGGGGGG 
               
               
                   
               
               
                 YY2_pho_FlyReg_FBgn0002521_B1H 
                 GAAGCCATAACGGC 
                 GCCGTTATGGCTTC 
               
               
                   
               
               
                 FOXD1_FOXB1_2_SELEX|FOXB1_2 
                 TATGTAAATATTGACAT 
                 TATGTCAATATTTACATA 
               
               
                   
                 A 
                   
               
               
                   
               
               
                 E2F_known161E2F_known20 
                 CGCGCCAAA 
                 TTTGGCGCG 
               
               
                   
               
               
                 ENSG00000250096_RUNX3_2_SELEX|ENSG00000250096_ 
                 AAACCGCAAA 
                 TTTGCGGTTT 
               
               
                 RUNX3_4_SELEX|RUNX3_2|RUNX3_4 
                   
                   
               
               
                   
               
               
                 RFX8_MA0600.1_ChIP-seq 
                 CCGCGGTTGCCATGGCA 
                 GTTGCCATGGCAACCGC 
               
               
                   
                 AC 
                 GG 
               
               
                   
               
               
                 KLF4_CG12029_SANGER_10_FBgn0035454_B1H 
                 GCCACACCCAC 
                 GTGGGTGTGGC 
               
               
                   
               
               
                 XBP1_pTH5019_PBM 
                 ACACGTCAC 
                 GTGACGTGT 
               
               
                   
               
               
                 HMX1_HMX3_1_SELEX|HMX3_3 
                 AGCAATTAACA 
                 TGTTAATTGCT 
               
               
                   
               
               
                 NRF1_known1 
                 CGCATGCGCA 
                 TGCGCATGCG 
               
               
                   
               
               
                 AP1_disc10 
                 CCCGCCCCCC 
                 GGGGGGCGGG 
               
               
                   
               
               
                 USF2_USF2_f1_HocoMoco 
                 GCCCACGTGAC 
                 GTCACGTGGGC 
               
               
                   
               
               
                 NFE2_N F2L2_si_HocoMoco 
                 CATGACTCAGCA 
                 TGCTGAGTCATG 
               
               
                   
               
               
                 ETV4_1 
                 ACATCCT 
                 AGGATGT 
               
               
                   
               
               
                 CR936877.3_RXRGJ1_HocoMoco 
                 GGTCAAAGGTCAC 
                 GTGACCTTTGACC 
               
               
                   
               
               
                 REST_disc1 
                 GTCCATGGTGCTGAA 
                 TTCAGCACCATGGAC 
               
               
                   
               
               
                 ZBTB1_pTH2366_PBM 
                 GTCCCGCAAC 
                 GTTGCGGGAC 
               
               
                   
               
               
                 OVOL1_ovo_SOLEXA_5_FBgn0003028_B1H 
                 AGTACCGTTATTTG 
                 CAAATAACGGTACT 
               
               
                   
               
               
                 PAX9_PAX9_1_SELEX|PAX9_PAX1_1_SELEX|PAX1_2|PAX9 
                 CGTCACGCATGACTGCA 
                 TGCAGTCATGCGTGACG 
               
               
                 _1 
                   
                   
               
               
                   
               
               
                 STAT2_K562_STAT2_Stanford_ChIP-seq 
                 GAAAATGAAACTGAA 
                 TTCAGTTTCATTTTC 
               
               
                   
               
               
                 PTEN_1 
                 CCCCAAGTGAAGG 
                 CCTTCACTTGGGG 
               
               
                   
               
               
                 RARG_RARG_3_SELEX|RARG_3 
                 AAGGTCACCAGAGGTC 
                 TGACCTCTGGTGACCTT 
               
               
                   
                 A 
                   
               
               
                   
               
               
                 TFAP2A_TFAP2C_2_SELEX|TFAP2A_TFAP2C_6_SELEX|TFA 
                 AGCCTCAGGCA 
                 TGCCTGAGGCT 
               
               
                 P2A_TFAP26_2_SELEX|TFAP26_31TFAP2_known15|TFAP2 
                   
                   
               
               
                 _known19 
                   
                   
               
               
                   
               
               
                 LBX2_LBX2_1_SELEX|LBX2_2 
                 CTCGACCTAATTA 
                 TAATTAGGTCGAG 
               
               
                   
               
               
                 PAX9_pTH8679_PBM 
                 CAGTCAAGCG 
                 CGCTTGACTG 
               
               
                   
               
               
                 NR3C1_known10 
                 CCCCCAAGAACACCATG 
                 GGGGGGGGGACATGGT 
               
               
                   
                 TCCCCCCCCC 
                 GTTCTTGGGGG 
               
               
                   
               
               
                 GFI16_1 
                 TAAATCACTGCA 
                 TGCAGTGATTTA 
               
               
                   
               
               
                 FOXD1_Foxg1_2_SELEX|FOXG1_4 
                 CCGGACACAATC 
                 GATTGTGTCCGG 
               
               
                   
               
               
                 DMBX1_ARX_1_SELEX|DMBX1_CART1_1_SELEX|ARX_2|A 
                 TTAATTAAATTAA 
                 TTAATTTAATTAA 
               
               
                 LX1_6 
                   
                   
               
               
                   
               
               
                 REST_MA0138.2_ChIP-seq|REST_PANC- 
                 GGCGCTGTCCATGGTGC 
                 TTCAGCACCATGGACAG 
               
               
                 1_NRSF_HudsonAlpha_ChIP-seq|REST_known4 
                 TGAA 
                 CGCC 
               
               
                   
               
               
                 RFX8_HeLa-S3_RFX5_Stanford_ChIP-seq 
                 CCTAGCAACAGATGA 
                 TCATCTGTTGCTAGG 
               
               
                   
               
               
                 SIX5_Six4_SOLEXA_FBgn0027364_B1H 
                 AATTGATA 
                 TATCAATT 
               
               
                   
               
               
                 TP63_P63_si_HocoMoco 
                 GAGACATGTCC 
                 GGACATGTCTC 
               
               
                   
               
               
                 HINFP_MA0131.1_SELEX|HINFP_1 
                 GCGGACGTTA 
                 TAACGTCCGC 
               
               
                   
               
               
                 MITF_MITF_f1_HocoMoco 
                 ATCACATGAC 
                 GTCATGTGAT 
               
               
                   
               
               
                 PAX9_V$PAX5_01_Transfac|PAX5_known1 
                 GGGGCGGCTACGCATC 
                 TCGAGGCGCAATGATGC 
               
               
                   
                 ATTGCGCCTCGA 
                 GTAGCCGCCCC 
               
               
                   
               
               
                 NR3C1_known12 
                 TCGTGCTCA 
                 TGAGCACGA 
               
               
                   
               
               
                 BHLHE40_Bhlhb2_2_SELEX 
                 AGCACGTGAC 
                 GTCACGTGCT 
               
               
                   
               
               
                 FOXD1_T-47D_FOXA1_HudsonAlpha_ChIP-seq 
                 CTGAGTAAACA 
                 TGTTTACTCAG 
               
               
                   
               
               
                 LMO2_1 
                 CGCCAGGTGCAG 
                 CTGCACCTGGCG 
               
               
                 HMX1_Hmx1_3423_PBM 
                 AAGCAATTAA 
                 TTAATTGCTT 
               
               
                   
               
               
                 BHLHE40_disc2 
                 CAGCAGCCGCCGGCGC 
                 CGCGCCGGCGGCTGCT 
               
               
                   
                 G 
                 G 
               
               
                   
               
               
                 IRX2_1 
                 AATTTTACATGTATTTA 
                 TAAATACATGTAAAATT 
               
               
                   
               
               
                 ESR2_pTH6055_PBM 
                 CAGGTCAA 
                 TTGACCTG 
               
               
                   
               
               
                 TCF4_pTH4580_PBM 
                 GAACACCTGC 
                 GCAGGTGTTC 
               
               
                   
               
               
                 HOXC5_I$UBX_01_Transfac 
                 ACGAAGCCATTAAGCCC 
                 GAGGGCTTAATGGCTTC 
               
               
                   
                 TC 
                 GT 
               
               
                   
               
               
                 STAT_known10 
                 GATTTCCC 
                 GGGAAATC 
               
               
                   
               
               
                 EGR3_EGR3_1_SELEX|EGR3_EGR2_2_SELEX|EGR1_known 
                 AGTGCGTGGGCGTAG 
                 CTACGCCCACGCACT 
               
               
                 11|EGR3_2 
                   
                   
               
               
                   
               
               
                 E2F3_E2F3_3_SELEX|E2F_known26 
                 AATTTTGGCGCCAAAAC 
                 AGTTTTGGCGCCAAAAT 
               
               
                   
                 T 
                 T 
               
               
                   
               
               
                 IRF6_1 
                 ACTTTGGTTTCGATCAG 
                 CTGATCGAAACCAAAGT 
               
               
                   
               
               
                 NFATC1_NFATC1_1_SELEX|NFATC1_1 
                 AATGGAAAATTATTTTC 
                 AGGGAAAATAATTTTCC 
               
               
                   
                 CCT 
                 ATT 
               
               
                   
               
               
                 NROB1_NROB1_si_HocoMoco 
                 GCGTGGGAGA 
                 TCTCCCACGC 
               
               
                   
               
               
                 HIC1_HIC1_si_HocoMoco 
                 GGGCAACCC 
                 GGGTTGCCC 
               
               
                   
               
               
                 TCF4_net_da_SANGER_10_FBgn0000413_B1H|ATOH8_net 
                 ACAGGTGGT 
                 ACCACCTGT 
               
               
                 _da_SANGER_10_FBgn0002931_B1H|SCRT1_CG17181_SA 
                   
                   
               
               
                 NGER_5_FBgn0035144_B1H 
                   
                   
               
               
                   
               
               
                 CREB3L1_CREB3_2_SELEX|CREB3_2 
                 GTGCCACGTCATCA 
                 TGATGACGTGGCAC 
               
               
                   
               
               
                 CEBPA_pTH5250_PBM 
                 ATTGCGTAA 
                 TTACGCAAT 
               
               
                   
               
               
                 TBX3_TBX2_f1_HocoMoco 
                 GTCGCTTCTCACACCTCT 
                 TGCCATCAGAGGTGTGA 
               
               
                   
                 GATGGCA 
                 GAAGCGAC 
               
               
                   
               
               
                 NR3C1_known14 
                 GGGAACATTATGTCCTA 
                 TTAGGACATAATGTTCC 
               
               
                   
                 A 
                 C 
               
               
                   
               
               
                 XBP1_V$XBP1_01_Transfac|XBP1_1 
                 ATAGGACACGTCATCAT 
                 ATGATGACGTGTCCTAT 
               
               
                   
               
               
                 ESR2_pTH3510_PBM 
                 GAGGTCATGC 
                 GCATGACCTC 
               
               
                   
               
               
                 TEAD1_TEAD1_f1_HocoMoco 
                 CACATTCCTGCGCC 
                 GGCGCAGGAATGTG 
               
               
                   
               
               
                 EMX2_EMX1_2_SELEX|EMX2_E MX2_2_SELEX|EMX1_2|E 
                 TAATTAGCTAATTA 
                 TAATTAGCTAATTA 
               
               
                 MX2_3 
                   
                   
               
               
                   
               
               
                 YY2_YY2_1_SELEX|YY2_1 
                 GTCCGCCATTA 
                 TAATGGCGGAC 
               
               
                   
               
               
                 NKX2-5_vnd_FlyReg_FBgn0003986_B1H 
                 GCACTTGAGC 
                 GCTCAAGTGC 
               
               
                   
               
               
                 ESR2_MA0258.2_ChIP-seq|ESRRA_disc1 
                 AGGTCACCCTGACCT 
                 AGGTCAGGGTGACCT 
               
               
                   
               
               
                 EGR3_pTH5337_PBM 
                 ATGCGTGGG 
                 CCCACGCAT 
               
               
                   
               
               
                 GATA2_Gata6_3769_PBM|GATA2_GATA2_si_HocoMoco| 
                 CAGATAAG 
                 CTTATCTG 
               
               
                 HMGN3_disc2 
                   
                   
               
               
                   
               
               
                 POU1F1_POU1F1_1_SELEX|POU1F1_4 
                 CATTAATTATGCATGAG 
                 CTCATGCATAATTAATG 
               
               
                   
               
               
                 YY2_H1-hESC_YY1_HudsonAlpha_ChIP-seq 
                 CAAGATGGCGGCCCC 
                 GGGGCCGCCATCTTG 
               
               
                   
               
               
                 HNF1A_HNF1B_2_SELEX|HNF1A_HNF1A_1_SELEX|HNF1A 
                 AGTTAATCATTAACT 
                 AGTTAATGATTAACT 
               
               
                 _4|HNF1B_4 
                   
                   
               
               
                   
               
               
                 FOSL1_HepG2_FOSL2_HudsonAlpha_ChIP-seq 
                 CAGGATGAGTCACC 
                 GGTGACTCATCCTG 
               
               
                   
               
               
                 IRF6_Irf6_3803_PBM 
                 GACCGAAACC 
                 GGTTTCGGTC 
               
               
                   
               
               
                 MSX1_Msx3_3206_PBM|MSX1_Msx2_3449_PBM|NOBOX 
                 ACCAATTA 
                 TAATTGGT 
               
               
                 _MA0125.1_SELEX|NOBOX_1 
                   
                   
               
               
                   
               
               
                 NKX2-5_Ceh-22_PBM|ISL2_ISL2_1_SELEX|ISL2_2 
                 GCACTTAA 
                 TTAAGTGC 
               
               
                   
               
               
                 FOXD1_MA0042.1_SELEX|FOXI1_2 
                 AAACAAACATCC 
                 GGATGTTTGTTT 
               
               
                   
               
               
                 TFAP2E_1 
                 ATCGCCTCAGGCAAT 
                 ATTGCCTGAGGCGAT 
               
               
                   
               
               
                 ARID3C_ARI3A_f1_HocoMoco 
                 AATTAAA 
                 TTTAATT 
               
               
                   
               
               
                 CUX1_V$CDPCR3_01_Transfac|CUX1_4 
                 CACCAATATGTATGG 
                 CCATACATATTGGTG 
               
               
                   
               
               
                 MYC_known14 
                 GACCACGTGGTC 
                 GACCACGTGGTC 
               
               
                   
               
               
                 TBX3_SRP001585_Tbx2_ChIP-seq 
                 AAACTACAATTCCCAGA 
                 GCATTCTGGGAATTGTA 
               
               
                   
                 ATGC 
                 GTTT 
               
               
                   
               
               
                 POU3F2_4 
                 CAAACTAATTAATTATC 
                 GATAATTAATTAGTTTG 
               
               
                   
               
               
                 USF1_pTH5265_PBM 
                 ACCACGTGAT 
                 ATCACGTGGT 
               
               
                   
               
               
                 HES4_dpn_SANGER_10_FBgn0010109_B1H 
                 GGCACGTGCCA 
                 TGGCACGTGCC 
               
               
                   
               
               
                 MYBL1_Mybl1_1717_PBM 
                 TAACGGTCA 
                 TGACCGTTA 
               
               
                   
               
               
                 KIAA0415_pTH9655_PBM 
                 ATTGTAAACAAA 
                 TTTGTTTACAAT 
               
               
                   
               
               
                 TCF4_MA0521.1_ChIP-seq 
                 AACAGCTGCAG 
                 CTGCAGCTGTT 
               
               
                   
               
               
                 ETV5_HeLa-53_ELK4_UCD_ChIP-seq 
                 CACTTCCGGCC 
                 GGCCGGAAGTG 
               
               
                   
               
               
                 NKX2-5_Vnd_SOLEXA_FBgn0003986_B1H|NKX2- 
                 CACTTGAG 
                 CTCAAGTG 
               
               
                 6_Tin_Cell_FBgn0004110_B1H 
                   
                   
               
               
                   
               
               
                 SOX18_SOX18_1_SELEX|SOX18_2 
                 AACAATGAAATTGTT 
                 AACAATTTCATTGTT 
               
               
                   
               
               
                 TCF7L2_known5 
                 AATCCCTTTGATCTATC 
                 GATAGATCAAAGGGATT 
               
               
                   
               
               
                 HNF4G_HNF4A_1_SELEX|HNF4_known16 
                 GAGTCCAAAGTCCATC 
                 GATGGACTTTGGACTC 
               
               
                   
               
               
                 GMEB2_GME B2_3_SELEX|GMEB2_3 
                 TACGTAACTGACGTA 
                 TACGTCAGTTACGTA 
               
               
                   
               
               
                 HOXC5_Hoxd3_1742_PBM|HOXC10_Hoxc10_2779_PBM 
                 GTCATTAA 
                 TTAATGAC 
               
               
                   
               
               
                 ATF7_Creb5_1_SELEX|CREB5_1 
                 AATGACGTCACC 
                 GGTGACGTCATT 
               
               
                   
               
               
                 CR936877.3_I$CF1_02_Transfac|CR936877.3_I$CF1_01_Tr 
                 CGTGACCCC 
                 GGGGTCACG 
               
               
                 ansfac 
                   
                   
               
               
                   
               
               
                 VDR_2 
                 CCCGGTGAACCC 
                 GGGTTCACCGGG 
               
               
                   
               
               
                 GATA2_GATA3_si_HocoMoco 
                 CTTATCTC 
                 GAGATAAG 
               
               
                   
               
               
                 LHX1_MA0135.1_SELEX|LHX3_2 
                 AAATTAATTAATC 
                 GATTAATTAATTT 
               
               
                   
               
               
                 GMEB1_pTH9026_PBM|GMEB1_pTH8745_PBM 
                 CGTACGTCA 
                 TGACGTACG 
               
               
                   
               
               
                 SMAD4_1 
                 AGGTGGCTGCCCCAC 
                 GTGGGGCAGCCACCT 
               
               
                   
               
               
                 ETS_disc8 
                 AACGGAAG 
                 CTTCCGTT 
               
               
                   
               
               
                 FUBP1_FUBP1_f1_HocoMoco 
                 AAAAAAACACAA 
                 TTGTGTTTTTTT 
               
               
                   
               
               
                 ZNF143_GM12878_ZNF143_Stanford_ChIP-seq 
                 CTGGGAATTGTAGTC 
                 GACTACAATTCCCAG 
               
               
                   
               
               
                 NKX3-1_V$NKX3A_01_Transfac|NKX3-1_1 
                 AAATAAGTATAT 
                 ATATACTTATTT 
               
               
                   
               
               
                 NR2E1_pTH2936_PBM 
                 AAAGTCAATT 
                 AATTGACTTT 
               
               
                   
               
               
                 ZBTB7A_known1 
                 AGGGCCCCC 
                 GGGGGCCCT 
               
               
                   
               
               
                 MSX1_2 
                 GAATTAATTAGTTGCA 
                 TGCAACTAATTAATTC 
               
               
                   
               
               
                 HOXD10_1 
                 AATGCAATAAAATTTAT 
                 ATAAATTTTATTGCATT 
               
               
                   
               
               
                 ETS_disc6 
                 AAATCTCGCG 
                 CGCGAGATTT 
               
               
                   
               
               
                 TFAP2_known4 
                 CCCTCCGCCTGGGGGC  
                 GCCCCCAGGCGGAGGG 
               
               
                   
               
               
                 TBX20_pTH9340_PBM 
                 AGGTGTCA 
                 TGACACCT 
               
               
                   
               
               
                 FOXJ3_YIL131C_2002_DeBoer11 
                 ATGTAAACAAGC 
                 GCTTGTTTACAT 
               
               
                   
               
               
                 SOX1_SOX2_3_SELEX|SOX2_4 
                 CATCAATAACATTGATC 
                 GATCAATGTTATTGATG 
               
               
                   
               
               
                 CTCF_GM12878_CTCF_UW_ChIP-seq 
                 GCCACCAGGGGGCGCC 
                 TGGCGCCCCCTGGTGGC 
               
               
                   
                 A 
                   
               
               
                   
               
               
                 GATA2_GATA1_si_HocoMoco 
                 ACAGATAAGG 
                 CCTTATCTGT 
               
               
                   
               
               
                 RAD21_disc2 
                 CCACTAGA 
                 TCTAGTGG 
               
               
                   
               
               
                 GATA2_K562_GATA2_UChicago_ChIP-seq 
                 ACAGATAAGA 
                 TCTTATCTGT 
               
               
                   
               
               
                 NKX2-1_2 
                 CCCTCAAGAGCC 
                 GGCTCTTGAGGG 
               
               
                   
               
               
                 SNAI2_wor_SANGER_2.5_FBgn0001983_B1H|ASCL2_I_1_s 
                 CACCTGC 
                 GCAGGTG 
               
               
                 c_da_SANGER_5_FBgn0002561_B1H|TCF4_ase_da_SANGE 
                   
                   
               
               
                 R_10_FBgn0000413_B1H|TCF4_I_1_sc_da_SANGER_5_FBg 
                   
                   
               
               
                 n0000413_B1H 
                   
                   
               
               
                   
               
               
                 HOXB7_1 
                 GTAGTAATTAATGCAA 
                 TTGCATTAATTACTAC 
               
               
                   
               
               
                 POU5F1_disc2 
                 ATGAATATGC 
                 GCATATTCAT 
               
               
                   
               
               
                 FOXD1_FOXG1_1_SELEX|FOXG1_1 
                 ATAAACAATTGTAAACA 
                 TGTTTACAATTGTTTAT 
               
               
                   
               
               
                 HAND1_2 
                 ATGCCAGACC 
                 GGTCTGGCAT 
               
               
                   
               
               
                 AR_pTH1739_PBM 
                 TAGGAACATA 
                 TATGTTCCTA 
               
               
                   
               
               
                 FOXP4_CG16899_SANGER_5_FBgn0037735_B1H 
                 GATAAACAA 
                 TTGTTTATC 
               
               
                   
               
               
                 HNF1_3 
                 ACTGTTAATTATTAACCA 
                 TGGTTAATAATTAACAG 
               
               
                   
                   
                 T 
               
               
                   
               
               
                 SREBF2_pTH0914_PBM 
                 ATCACGCGAT 
                 ATCGCGTGAT 
               
               
                   
               
               
                 IRF_known13 
                 CAAAATCGAAACTAA 
                 TTAGTTTCGATTTTG 
               
               
                   
               
               
                 TCF4_ITF2_f1_HocoMoco 
                 CCAGGTGCA 
                 TGCACCTGG 
               
               
                   
               
               
                 NFKB_disc3 
                 AAATCCCCTC 
                 GAGGGGATTT 
               
               
                   
               
               
                 OSR2_Osr2_1727_PBM 
                 AACGGTAGCA 
                 TGCTACCGTT 
               
               
                   
               
               
                 NR1H3_NR1H4_f1_HocoMoco 
                 AGGGTCAATGACCT 
                 AGGTCATTGACCCT 
               
               
                   
               
               
                 IRF_known5 
                 AAAATGAAACTG 
                 CAGTTTCATTTT 
               
               
                   
               
               
                 HMGA2_pTH9279_PBM 
                 AGAAAAAT 
                 ATTTTTCT 
               
               
                   
               
               
                 EGR3_EGR2_1_SELEX|EGR1_known10 
                 ACGCCCACGCA 
                 TGCGTGGGCGT 
               
               
                   
               
               
                 NR2E1_pTH5561_PBM 
                 AATTGACAT 
                 ATGTCAATT 
               
               
                   
               
               
                 PITX2_2 
                 GATGATTAATCCCTTCA 
                 TGAAGGGATTAATCATC 
               
               
                   
               
               
                 POU3F3_pTH9365_PBM 
                 ATAATGAA 
                 TTCATTAT 
               
               
                   
               
               
                 TCF4_HLH54F_da_SANGER_5_FBgn0000413_B1H|MSC_HL 
                 AACACCTGTTG 
                 CAACAGGTGTT 
               
               
                 H54F_da_SANGER_5_FBgn0022740_B1H 
                   
                   
               
               
                   
               
               
                 HBP1_HBP1_f1_HocoMoco 
                 ACTCATTGA 
                 TCAATGAGT 
               
               
                   
               
               
                 HNF4G_Hnf4_SANGER_5_FBgn0004914_B1H|NR2F2_NR2 
                 GGGGTCAA 
                 TTGACCCC 
               
               
                 F1_3_SELEX|HNF4_known25 
                   
                   
               
               
                   
               
               
                 TFAP2B_1 
                 ATGCCCTAGGGCAA 
                 TTGCCCTAGGGCAT 
               
               
                   
               
               
                 CR936877.3_pTH2861_PBM|CR936877.3_pTH2880_PBM| 
                 GGGGTCAC 
                 GTGACCCC 
               
               
                 NR2F2_pTH5516_PBM 
                   
                   
               
               
                   
               
               
                 AFP_1 
                 ATTAACTACAC 
                 GTGTAGTTAAT 
               
               
                   
               
               
                 OLIG2_Oli_da_SANGER_5_2_FBgn0032651_B1H|TCF4_Oli 
                 ACCGCACCATCTGTC 
                 GACAGATGGTGCGGT 
               
               
                 _da_SANGER_5_2_FBgn0000413_B1H 
                   
                   
               
               
                   
               
               
                 NFATC1_NFAC1_si_HocoMoco 
                 AATTTTCCATTG 
                 CAATGGAAAATT 
               
               
                   
               
               
                 ETV5_V$ELK1_02_Transfac|ETS_known2 
                 CCAACCGGAAGTCC 
                 GGACTTCCGGTTGG 
               
               
                   
               
               
                 TCF4_tap_da_SANGER_5_FBgn0000413_B1H|NEUROG1_t 
                 CCATATGTCAC 
                 GTGACATATGG 
               
               
                 ap_da_SANGER_5_FBgn0015550_B1H 
                   
                   
               
               
                   
               
               
                 GFI1_2 
                 CGAAATCACGGCC 
                 GGCCGTGATTTCG 
               
               
                   
               
               
                 NKX2-5_MA0122.1_SELEX|N KX3-2_1 
                 TCCACTTAA 
                 TTAAGTGGA 
               
               
                   
               
               
                 MXI1_HeLa-S3_MXI1_Stanford_ChIP-seq 
                 CACGTGGTTCC 
                 GGAACCACGTG 
               
               
                   
               
               
                 EVX2_1 
                 AACGCTAATTAGCGGTG 
                 CACCGCTAATTAGCGTT 
               
               
                   
               
               
                 ETV5_MA0098.2_ChIP-seq 
                 CCCACTTCCTGTCTC 
                 GAGACAGGAAGTGGG 
               
               
                   
               
               
                 RXRA_disc2 
                 CGGCCACCAGGGGGCG 
                 TCCGGCGCCCCCTGGTG 
               
               
                   
                 CCGGA 
                 GCCG 
               
               
                   
               
               
                 MEIS1::HOXA9_2 
                 CCATAAAACTGTCA 
                 TGACAGTTTTATGG 
               
               
                   
               
               
                 IRX3_Irx6_2623_PBM 
                 ATTACAA 
                 TTGTAAT 
               
               
                   
               
               
                 SOX13_MA0515.1_ChIP-seq 
                 AAAACAATGG 
                 CCATTGTTTT 
               
               
                   
               
               
                 OBOX5_1 
                 GAAATTTAATCCCTCTA 
                 TAGAGGGATTAAATTTC 
               
               
                   
               
               
                 ZNF410_1 
                 TATTATGGGATGGATAA 
                 TTATCCATCCCATAATA 
               
               
                   
               
               
                 GATA_known18 
                 CAATTCTTATCTCTATA 
                 TATAGAGATAAGAATTG 
               
               
                   
               
               
                 MITF_Mitf_SANGER_5_FBgn0263112_B1H 
                 CACGTGA 
                 TCACGTG 
               
               
                   
               
               
                 SCXA_CG33557_da_SANGER_5_FBgn0053557_B1H|TCF4_ 
                 CCAGATGGCACGGACA 
                 TGTTGTGTCCGTGCCAT 
               
               
                 CG33557_da_SANGER_5_FBgn0000413_B1H 
                 CAACA 
                 CTGG 
               
               
                   
               
               
                 SMC3_disc3 
                 CCAGGGGGCGC 
                 GCGCCCCCTGG 
               
               
                   
               
               
                 ALX1_PRRX1_3_SELEX|PROP1_PROP1_2_SELEX|PROP1_31 
                 TAATCTAATTA 
                 TAATTAGATTA 
               
               
                 PRRX1_4 
                   
                   
               
               
                   
               
               
                 ZBTB42_ZN238_a_HocoMoco 
                 GCGAAACATCTGGA 
                 TCCAGATGTTTCGC 
               
               
                   
               
               
                 MAX_Max_Mnt_SANGER_5_FBgn0017578_B1H| MYC_kno 
                 CACGTGG 
                 CCACGTG 
               
               
                 wn17 
                   
                   
               
               
                   
               
               
                 MTF1_MTF1_f1_HocoMoco 
                 AGTGCCGTGTGCAAAAC 
                 GTTTTGCACACGGCACT 
               
               
                   
               
               
                 PAX2_PAX2_si_HocoMoco 
                 GCATGAC 
                 GTCATGC 
               
               
                   
               
               
                 SIX5_known4 
                 ATAAGTGATACCCTATC 
                 GATAGGGTATCACTTAT 
               
               
                   
               
               
                 NOBOX_pTH5791_PBM 
                 ACCAATTAAG 
                 CTTAATTGGT 
               
               
                   
               
               
                 BSX_pTH6569_PBM|ESX1_ESX1_1_SELEX|GBX2_Gbx1_1_S 
                 ACCAATTAAC 
                 GTTAATTGGT 
               
               
                 ELEX|ESX1_ESX1_2_SELEX|ESX1_2|ESX1_3|GBX1_3 
                   
                   
               
               
                   
               
               
                 TCF4_amos_da_SANGER_10_FBgn0000413_B1H|ATOH7_a 
                 ACCATCTGCCG 
                 CGGCAGATGGT 
               
               
                 mos_da_SANGER_10_FBgn0003270_B1H 
                   
                   
               
               
                   
               
               
                 SP9_SP4_f1_HocoMoco 
                 CGGCCCCGCCCCCCCCC 
                 GGGGCCAGGGGGGGG 
               
               
                   
                 TGGCCCC 
                 GCGGGGCCG 
               
               
                   
               
               
                 NPAS3_EPAS1_si_HocoMoco 
                 CCCACGTACGCAC 
                 GTGCGTACGTGGG 
               
               
                   
               
               
                 ESRRG_ERR2_f1_HocoMoco|NR5A1_STF1_f1_HocoMoco| 
                 TCAAGGTCA 
                 TGACCTTGA 
               
               
                 ESRRG_ERR1_f1_HocoMoco|ESRRG_ERR3_f1_HocoMoco| 
                   
                   
               
               
                 NR5A1_2 
                   
                   
               
               
                   
               
               
                 DOBOX5_1 
                 GATAATTAATCCCTTCC 
                 GGAAGGGATTAATTATC 
               
               
                   
               
               
                 HOXC6_Hoxc8_3429_PBM 
                 GGCAATTAA 
                 TTAATTGCC 
               
               
                   
               
               
                 NFE2_NFE2_f2_HocoMoco 
                 AGCATGACTCAGCA 
                 TGCTGAGTCATGCT 
               
               
                   
               
               
                 MYC_known15 
                 AACCACGTGA 
                 TCACGTGGTT 
               
               
                   
               
               
                 MXI1_disc2 
                 AACCACGTGG 
                 CCACGTGGTT 
               
               
                   
               
               
                 ELF3_Elf3_PBM 
                 ACCCGGAAAT 
                 ATTTCCGGGT 
               
               
                   
               
               
                 RORB_MA0072.1_SELEX|RORA_5 
                 TATAAGTAGGTCAA 
                 TTGACCTACTTATA 
               
               
                   
               
               
                 ARNT2_pTH5159_PBM 
                 ATTCATGTGC 
                 GCACATGAAT 
               
               
                   
               
               
                 KLF4_KLF1_f1_HocoMoco 
                 CAGGGTGTGGC 
                 GCCACACCCTG 
               
               
                   
               
               
                 HOXA4_zen2_SOLEXA_2_FBgn0004054_B1H 
                 GTCATTAAGA 
                 TCTTAATGAC 
               
               
                   
               
               
                 RARA_1 
                 CAGGTGACCTTTGAGA 
                 TCTCAAAGGTCACCTG 
               
               
                   
               
               
                 NRF1_disc3 
                 CCCCGCCCGC 
                 GCGGGCGGGG 
               
               
                   
               
               
                 FOXD1_Foxg1_1_SELEX|FOXG1_3 
                 ATAAACAAGTGTAAACA 
                 TGTTTACACTTGTTTAT 
               
               
                   
               
               
                 GCM1_pTH9386_PBM|GCM1_pTH9259_PBM|GCM1_pTH 
                 ACCCGCAT 
                 ATGCGGGT 
               
               
                 8361_PBM 
                   
                   
               
               
                   
               
               
                 SP9_Sp1_SOLEXA_2.5_FBgn0020378_B1H 
                 AAGTGGGCGTGGCC 
                 GGCCACGCCCACTT 
               
               
                   
               
               
                 SIN3A_disc5 
                 CAGCACCAGG 
                 CCTGGTGCTG 
               
               
                   
               
               
                 POU3F3_GM12878_OCT2_HudsonAlpha_ChIP- 
                 ATATGCAAAT 
                 ATTTGCATAT 
               
               
                 seq|POU3F3_GM12878_POU2F2_HudsonAlpha_ChIP- 
                   
                   
               
               
                 seq|NANOG_disc1|TATA_disc9 
                   
                   
               
               
                   
               
               
                 E2F6_E2F6_f1_HocoMoco 
                 CCTTCCCGCCCA 
                 TGGGCGGGAAGG 
               
               
                   
               
               
                 NR2F2_COT2_f1_HocoMoco|RXRA_disc1 
                 CAAAGGTCAA 
                 TTGACCTTTG 
               
               
                   
               
               
                 NR4A2_NR4A3_f1_HocoMoco 
                 CAAAGGTCAG 
                 CTGACCTTTG 
               
               
                   
               
               
                 JUN_MA0489.1_ChIP-seq 
                 AGGAGATGACTCAT 
                 ATGAGTCATCTCCT 
               
               
                   
               
               
                 HOXC5_Ipf1_3815_PBM 
                 CTAATGGC 
                 GCCATTAG 
               
               
                   
               
               
                 ENSG00000250096_RUNX2_2_SELEX|ENSG00000250096_ 
                 TAACCGCAAAAACCGCA 
                 TTGCGGTTTTTGCGGTT 
               
               
                 RUNX3_3_SELEX|RUNX2_5|RUNX3_3 
                 A 
                 A 
               
               
                   
               
               
                 JUN_K562_JUND_UChicago_ChIP-seq 
                 AAGTATGAGTCATCA 
                 TGATGACTCATACTT 
               
               
                   
               
               
                 WT1_1 
                 CCCTCCCCC 
                 GGGGGAGGG 
               
               
                   
               
               
                 HNF1A_3 
                 ATTTTAGTTAACTAAGG 
                 CCTTAGTTAACTAAAAT 
               
               
                   
               
               
                 DRGX_MA0467.1_ChIP-seq 
                 AAGAGGATTAG 
                 CTAATCCTCTT 
               
               
                   
               
               
                 FOSL1_K562_CFOS_UChicago_ChIP-seq 
                 GAGGATGAGTCACCA 
                 TGGTGACTCATCCTC 
               
               
                   
               
               
                 MYB_V$VMYB_02_Transfac 
                 GCCGTTAGA 
                 TCTAACGGC 
               
               
                   
               
               
                 AR_NR3C1_1_SELEX|NR3C1_known18 
                 GGGAACATTATGTACCC 
                 GGGTACATAATGTTCCC 
               
               
                   
               
               
                 HOXA5_1 
                 TGCCAACTCCCCCATTA 
                 TGGAGTCGAGCACTAAT 
               
               
                   
                 GTGCTCGACTCCA 
                 GGGGGAGTTGGCA 
               
               
                   
               
               
                 OBOX5_2 
                 AAGAGGGATTAATTATC 
                 GATAATTAATCCCTCTT 
               
               
                   
               
               
                 PHOX2A_1 
                 CAGCATTAATTAGTAG 
                 CTACTAATTAATGCTG 
               
               
                   
               
               
                 SOX17_Sox17_2837_PBM 
                 AGGATGAAT 
                 ATTCATCCT 
               
               
                   
               
               
                 ALX1_CG33980_SOLEXA_2_0_FBgn0053980_B1H 
                 CTTAATTAGC 
                 GCTAATTAAG 
               
               
                   
               
               
                 FOXD1_Mw164_ChIP-seq 
                 CTGTTTAC 
                 GTAAACAG 
               
               
                   
               
               
                 GATA_known16 
                 CTTTATTTCTTATCTCTA 
                 TTTTTAGAGATAAGAAA 
               
               
                   
                 AAAA 
                 TAAAG 
               
               
                   
               
               
                 FOSL2_FOSL2_f1_HocoMoco 
                 ATGACTCATCC 
                 GGATGAGTCAT 
               
               
                   
               
               
                 GATA_known7 
                 AGATAAGGCCT 
                 AGGCCTTATCT 
               
               
                   
               
               
                 NFE2_K562_NFE2_Stanford_ChIP-seq 
                 AAAATTGCTGAGTCATG 
                 CATGACTCAGCAATTTT 
               
               
                   
               
               
                 MYF_1 
                 CAGCAGCTGCTG 
                 CAGCAGCTGCTG 
               
               
                   
               
               
                 ZEB1_Mv136_ChIP-seq 
                 CACACACCTG 
                 CAGGTGTGTG 
               
               
                   
               
               
                 RORB_MA0071.1_SELEX|RORA_4 
                 ATCAAGGTCA 
                 TGACCTTGAT 
               
               
                   
               
               
                 ZBTB33_MA0527.1_ChIP-seq 
                 CAGATCTCGCGAGAG 
                 CTCTCGCGAGATCTG 
               
               
                   
               
               
                 ZEB1_ZEB1_do_HocoMoco|SNAI2_esg_SANGER_2.5_FBgn 
                 ACAGGTG 
                 CACCTGT 
               
               
                 0001981_B1H 
                   
                   
               
               
                   
               
               
                 CTCF_HeLa-S3_CTCF_UT-A_ChIP-seq 
                 GCCACCAGGGGGCAC 
                 GTGCCCCCTGGTGGC 
               
               
                   
               
               
                 AL662830.5_PBX1_do_HocoMoco 
                 AATTTGATTGATGGG 
                 CCCATCAATCAAATT 
               
               
                   
               
               
                 BRCA1_known1 
                 CAACAGAA 
                 TTCTGTTG 
               
               
                   
               
               
                 NKX2-5_Nkx2-9_3082_PBM 
                 AGCACTTAAG 
                 CTTAAGTGCT 
               
               
                   
               
               
                 HOXD3_1 
                 AGGTTAATTAACTCAA 
                 TTGAGTTAATTAACCT 
               
               
                   
               
               
                 DMRTA2_pTH9188_PBM 
                 AATGTATCAAT 
                 ATTGATACATT 
               
               
                   
               
               
                 TP53_Tp53_1_SELEX|TP53_5 
                 ACATGTCCATGGACATG 
                 ACATGTCCATGGACATG 
               
               
                   
                 T 
                 T 
               
               
                   
               
               
                 MITF_TFEB_f1_HocoMoco 
                 CACGTGACC 
                 GGTCACGTG 
               
               
                   
               
               
                 POU3F3_pTH9256_PBM|POU3F3_pTH9297_PBM 
                 ATAATTCATA 
                 TATGAATTAT 
               
               
                   
               
               
                 ZKSCAN3_ZNF306_1_SELEX|ZKSCAN3_1 
                 TCGAGGCTAGACCA 
                 TGGTCTAGCCTCGA 
               
               
                   
               
               
                 REST_HTB-11_NRSF_HudsonAlpha_ChIP- 
                 TCAGCACCATGGACA 
                 TGTCCATGGTGCTGA 
               
               
                 seq|REST_HepG2_NRSF_HudsonAlpha_ChIP-seq 
                   
                   
               
               
                   
               
               
                 SOX1_Sox1_2631_PBM 
                 AAAGATGAAT 
                 ATTCATCTTT 
               
               
                   
               
               
                 NPAS2_pTH5056_PBM 
                 GCCACGTGGC 
                 GCCACGTGGC 
               
               
                   
               
               
                 SOX9_SOX8_8_SELEX|SOX8_9 
                 AATCAATTGCAGTGATT 
                 AATCACTGCAATTGATT 
               
               
                   
               
               
                 GCM1_GCM1_3_SELEX|GCM1_4 
                 CATGCGGGTAC 
                 GTACCCGCATG 
               
               
                   
               
               
                 HES4_I$HAIRY_01_Transfac 
                 ATGGCGCGTGCCGC 
                 GCGGCACGCGCCAT 
               
               
                   
               
               
                 EN2_EN1_1_SELEX|EN2_EN2_2_SELEX|EN1_4|EN2_3 
                 CCCAATTAGC 
                 GCTAATTGGG 
               
               
                   
               
               
                 ZNF628_1 
                 CAAGGTTGGTTGC 
                 GCAACCAACCTTG 
               
               
                   
               
               
                 CTCF_AG04449_CTCF_UW_ChIP-seq 
                 CCACCAGGGGGCGCCG 
                 CGGCGCCCCCTGGTGG 
               
               
                   
               
               
                 SIX5_disc4 
                 AAAACTACAA 
                 TTGTAGTTTT 
               
               
                   
               
               
                 FOXD1_fkh_NAR_FBgn0000659_B1H|FOXD1_Mf15_ChIP- 
                 TGTTTGCTTAA 
                 TTAAGCAAACA 
               
               
                 seq|FOXD1_MA0446.1_B1H 
                   
                   
               
               
                   
               
               
                 DMRT3_1 
                 AAAATGTATCAAATT 
                 AATTTGATACATTTT 
               
               
                   
               
               
                 NRF1_MA0506.1_ChIP-seq 
                 GCGCCTGCGCA 
                 TGCGCAGGCGC 
               
               
                   
               
               
                 SCRT2_scrt_SANGER_2.5_FBgn0004880_B1H 
                 ACCACCTGTTG 
                 CAACAGGTGGT 
               
               
                   
               
               
                 UBP1_pTH8565_PBM 
                 AACCGGTTA 
                 TAACCGGTT 
               
               
                   
               
               
                 ETV6_ETV6_2_SELEX|ETV6_2 
                 AGCGGAAGTG 
                 CACTTCCGCT 
               
               
                   
               
               
                 FOXA_known3 
                 ATAAACAAACAGA 
                 TCTGTTTGTTTAT 
               
               
                   
               
               
                 FOXD1_FOXJ3_si_HocoMoco 
                 AAAAAATAAACAA 
                 TTGTTTATTTTTT 
               
               
                   
               
               
                 HMBOX1_HM BOX1_1_SELEX|HMBOX1_2 
                 ACTAGTTAAC 
                 GTTAACTAGT 
               
               
                   
               
               
                 FOXD1_MA0458.1_B1H|FOXD1_slp1_NAR_FBgn0003430_ 
                 AATGTAAACAA 
                 TTGTTTACATT 
               
               
                 B1H 
                   
                   
               
               
                   
               
               
                 SOX9_SOX8_5_SELEX|SOX8_6 
                 TGAATGTGCAGTCA 
                 TGACTGCACATTCA 
               
               
                   
               
               
                 NFY_known1 
                 GTGATTGGTTA 
                 TAACCAATCAC 
               
               
                   
               
               
                 JUN_HepG2_JUND_Stanford_ChIP-seq 
                 AAGGTGACGTCATCA 
                 TGATGACGTCACCTT 
               
               
                   
               
               
                 HES4_h_SANGER_5_FBgn0001168_B1H 
                 GGCACGCGCC 
                 GGCGCGTGCC 
               
               
                   
               
               
                 JUN_V$VJUN_01_Transfac 
                 CCGATGACGTCATCCC 
                 GGGATGACGTCATCGG 
               
               
                   
               
               
                 AHR::ARNT_1 
                 GGGCACGCAACCCTTA 
                 TAAGGGTTGCGTGCCC 
               
               
                   
               
               
                 NFY_known4 
                 CAGCCAATGAG 
                 CTCATTGGCTG 
               
               
                   
               
               
                 TCF4_V$E47_01_Transfac 
                 CCGGCAGGTGTCCGC 
                 GCGGACACCTGCCGG 
               
               
                   
               
               
                 AP1_known7 
                 CCCCTTGAGTCA 
                 TGACTCAAGGGG 
               
               
                   
               
               
                 MAFK_MA0495.1_ChIP-seq 
                 AAAAATTGCTGACTCAG 
                 GCTGAGTCAGCAATTTT 
               
               
                   
                 C 
                 T 
               
               
                   
               
               
                 KLF4_luna_SANGER_5_FBgn0040765_B1H 
                 GGCAACGCCC 
                 GGGCGTTGCC 
               
               
                   
               
               
                 MAFB_Mafb_2914_PBM 
                 AAATTGCTGACGT 
                 ACGTCAGCAATTT 
               
               
                   
               
               
                 IRF4_IRF4_si_HocoMoco 
                 AAAAAAGAAAATGAAA 
                 TTTCATTTTCTTTTTT 
               
               
                   
               
               
                 HLTF_1 
                 AACCTTATAT 
                 ATATAAGGTT 
               
               
                   
               
               
                 NHLH2_MA0048.1_SELEX|NHLH1_3 
                 ACGCAGCTGCGC 
                 GCGCAGCTGCGT 
               
               
                   
               
               
                 ARID3C_I$DRI_01_Transfac 
                 TATTAATCGA 
                 TCGATTAATA 
               
               
                   
               
               
                 HES4_MA0449.1_B1H|HES5_pTH5450_PBM|TCFL5_pTH45 
                 GGCACGTGCC 
                 GGCACGTGCC 
               
               
                 76_PBM|HES4_h_NAR_FBgn0001168_B1H 
                   
                   
               
               
                   
               
               
                 POU2F2_known7 
                 AAATATGCAAATCAC 
                 GTGATTTGCATATTT 
               
               
                   
               
               
                 AR_V$GRE_C_Transfac|NR3C1_known2 
                 CAGAACAGATTGTACC 
                 GGTACAATCTGTTCTG 
               
               
                   
               
               
                 LBX2_MA0232.1_B1H|GBX2_Exex_SOLEXA_FBgn0041156_ 
                 TAATTA 
                 TAATTA 
               
               
                 B1H|DLX1_DII_SOLEXA_FBgn0000157_B1H 
                   
                   
               
               
                   
               
               
                 FOXD1_FOXJ3_U_HocoMoco 
                 TAAACAAAAACAA 
                 TTGTTTTTGTTTA 
               
               
                   
               
               
                 YY1_known6 
                 GATGGC 
                 GCCATC 
               
               
                   
               
               
                 HIVEP3_ZEP2_si_HocoMoco 
                 GGGGTTTCCCTACC 
                 GGTAGGGAAACCCC 
               
               
                   
               
               
                 ATF1_V$CREB_01_Transfac|ATF3_known2|ATF2_3|ATF3_ 
                 TGACGTCA 
                 TGACGTCA 
               
               
                 known15 
                   
                   
               
               
                   
               
               
                 HNF4_disc2 
                 AAGTCCAGT 
                 ACTGGACTT 
               
               
                   
               
               
                 HLX_H2.0_SOLEXA_FBgn0001170_B1H 
                 TTAATAAA 
                 TTTATTAA 
               
               
                   
               
               
                 CR936877.3_RXRG_2_SELEX|CR936877.3_RXRA_4_SELEX| 
                 GAGGTCATGACCCC 
                 GGGGTCATGACCTC 
               
               
                 RXRA_known13|RXRG_2 
                   
                   
               
               
                   
               
               
                 PLAG1_PLAG1_f1_HocoMoco 
                 CCCCTCCTGATGCCCCC 
                 GGGGGCATCAGGAGGG 
               
               
                   
                   
                 G 
               
               
                   
               
               
                 TBPL2_V$TBP_01_Transfac|TATA_known3 
                 TATAAATA 
                 TATTTATA 
               
               
                   
               
               
                 SREBF2_V$SREBP1_01_Transfac|SREBP_known1 
                 GATCACGTGAC 
                 GTCACGTGATC 
               
               
                   
               
               
                 FOXD1_FOXG1_2_SELEX|FOXG1_2 
                 ACGGACACAATG 
                 CATTGTGTCCGT 
               
               
                   
               
               
                 GMEB2_pTH3084_PBM|GMEB1_pTH9298_PBM|GMEB1_ 
                 GTACGTCA 
                 TGACGTAC 
               
               
                 pTH9282_PBM 
                   
                   
               
               
                   
               
               
                 NR2F2_2 
                 CTCGTGACCTTTGAGA 
                 TCTCAAAGGTCACGAG 
               
               
                   
               
               
                 BATF_disc3 
                 AAATGACTGG 
                 CCAGTCATTT 
               
               
                   
               
               
                 GATA2_V$GATA1_04_Transfac|GATA_known6 
                 ATCAGATAAGGGG 
                 CCCCTTATCTGAT 
               
               
                   
               
               
                 FOSL1_pTH5077_PBM 
                 TGATGACGCAA 
                 TTGCGTCATCA 
               
               
                   
               
               
                 GATA_known13 
                 AGATAG 
                 CTATCT 
               
               
                   
               
               
                 RELA_GM19099_NFKB_Stanford_ChIP-seq 
                 AGGGGATTTCCAA 
                 TTGGAAATCCCCT 
               
               
                   
               
               
                 NFE2_disc4 
                 CCGCTGACTCC 
                 GGAGTCAGCGG 
               
               
                   
               
               
                 MAFA_MAF_f1_HocoMoco 
                 GTCAGCAA 
                 TTGCTGAC 
               
               
                   
               
               
                 ALX1_Isx_3445_PBM 
                 CAATTAGC 
                 GCTAATTG 
               
               
                   
               
               
                 E2F1_V$E2F_03_Transfac|E2F_known9 
                 TTTCGCGCCAAA 
                 TTTGGCGCGAAA 
               
               
                   
               
               
                 ATF1_V$CREB_Q2_Transfac|ATF3_known6 
                 CCTTACGTCACC 
                 GGTGACGTAAGG 
               
               
                   
               
               
                 RORB_Hr46_SANGER_5_FBgn0000448_B1H 
                 AAGTAGGTCA 
                 TGACCTACTT 
               
               
                   
               
               
                 FOXD1_FOXC1_1_SELEX|FOXC1_3 
                 AAGTAAATAAACA 
                 TGTTTATTTACTT 
               
               
                   
               
               
                 FOXJ1_1 
                 ATGTGTTTGTTTA 
                 TAAACAAACACAT 
               
               
                   
               
               
                 SOX9_SOX9_3_SELEX|SOX9_5 
                 ATCAATGTGCAGTGAT 
                 ATCACTGCACATTGAT 
               
               
                   
               
               
                 HOXB9_1 
                 CGAATTTTATGGCTCC 
                 GGAGCCATAAAATTCG 
               
               
                   
               
               
                 TBX3_TBX5_1_SELEX|TBX3_pTH3973_PBM|TBX3_TBX5_si 
                 AGGTGTGA 
                 TCACACCT 
               
               
                 HocoMoco|TBX22_TBX15_2_SELEX|MGA_MGA_1_SELEX 
                   
                   
               
               
                 |TBX1_TBX1_3_SELEX|TBX3_pTH9336_PBM|TBX3_pTH37 
                   
                   
               
               
                 75_PBM|TBX3_TBX4_1_SELEX|MGA_1|TBX15_2|TBX1_3| 
                   
                   
               
               
                 TBX4_1|TBX5_4 
                   
                   
               
               
                   
               
               
                 CDX2_2 
                 AAATTTTATTACCGTT 
                 AACGGTAATAAAATTT 
               
               
                   
               
               
                 HNF1A_V$HNF1_01_Transfac 
                 GGTTAATGATTACCA 
                 TGGTAATCATTAACC 
               
               
                   
               
               
                 CEBPA_CEBPE_f1_HocoMoco 
                 AAGATTGCGCAA 
                 TTGCGCAATCTT 
               
               
                   
               
               
                 OTP_1 
                 CCAATTAATTAATTACG 
                 CGTAATTAATTAATTGG 
               
               
                   
               
               
                 HOXC5_Antp_FlyReg_FBgn0000095_B1H 
                 AATTAT 
                 ATAATT 
               
               
                   
               
               
                 ZNF263_T-REx-HEK293_ZNF263_UCD_ChIP-seq 
                 CCTCTCCCTCCTCCC 
                 GGGAGGAGGGAGAGG 
               
               
                   
               
               
                 RELA_REL_do_HocoMoco 
                 GGGAAATCCCCA 
                 TGGGGATTTCCC 
               
               
                   
               
               
                 RELB_RELB_si_HocoMoco 
                 GGGAAATCCCCC 
                 GGGGGATTTCCC 
               
               
                   
               
               
                 SHOX_PhdP_SOLEXA_FBgn0025334_B1H|SHOX_PhdP_Cell 
                 AATTAA 
                 TTAATT 
               
               
                 FBgn0025334_B1H 
                   
                   
               
               
                   
               
               
                 BCL6_MA0463.1_ChIP-seq 
                 TGCTTTCTAGGAAA 
                 TTTCCTAGAAAGCA 
               
               
                   
               
               
                 HOXC5_MA0132.1_SELEX|PDX1_3 
                 AATTAG 
                 CTAATT 
               
               
                   
               
               
                 PAX5_Poxn_SOLEXA_5_FBgn0003130_B1H 
                 AGCGTGACG 
                 CGTCACGCT 
               
               
                   
               
               
                 SOX18_1 
                 TTCAATTGTTCTAAAA 
                 TTTTAGAACAATTGAA 
               
               
                   
               
               
                 ESRRA_disc2 
                 AGCCCAAGGTCAC 
                 GTGACCTTGGGCT 
               
               
                   
               
               
                 YY1_disc1 
                 GCCGCCATCTTGGGTGC 
                 TTGCCCGCACCCAAGAT 
               
               
                   
                 GGGCAA 
                 GGCGGC 
               
               
                   
               
               
                 HOXA13_1 
                 AAACCTCGTAAAATTT 
                 AAATTTTACGAGGTTT 
               
               
                   
               
               
                 HOXC10_Hoxd9_1_SELEX|HOXD9_1 
                 CCCATAAAA 
                 TTTTATGGG 
               
               
                   
               
               
                 BARHL2_BARHL2_2_SELEX|BARHL2_3 
                 AGCAATTAAC 
                 GTTAATTGCT 
               
               
                   
               
               
                 NR2F2_Mv104_ChIP-seq|NR2C2_disc2 
                 ACCTTTGACC 
                 GGTCAAAGGT 
               
               
                   
               
               
                 DMRT2_pTH9261_PBM 
                 AATTGATACA 
                 TGTATCAATT 
               
               
                   
               
               
                 ATF1_ATF1_si_HocoMoco 
                 CTGACGTCAC 
                 GTGACGTCAG 
               
               
                   
               
               
                 DMRTC2_pTH9215_PBM|DMRT1_pTH9197_PBM|DMRTA 
                 AATGTATCAA 
                 TTGATACATT 
               
               
                 2_pTH9198_PBM 
                   
                   
               
               
                   
               
               
                 HNF1_4 
                 AGCAGTTAATAATTAAC 
                 TATGGTTAATTATTAACT 
               
               
                   
                 CATA 
                 GCT 
               
               
                   
               
               
                 MEOX2_MEOX1_1_SELEX|MEOX1_2 
                 GCTAATTAAC 
                 GTTAATTAGC 
               
               
                   
               
               
                 NKX2-4_1|NKX2-1_3 
                 AATTTCAAGTGGCTTA 
                 TAAGCCACTTGAAATT 
               
               
                   
               
               
                 HOXC8_1 
                 ACGTTAATTACCCCAA 
                 TTGGGGTAATTAACGT 
               
               
                   
               
               
                 CTCF_disc2 
                 ACCAGGGGGCG 
                 CGCCCCCTGGT 
               
               
                   
               
               
                 GATA2_K562b_GATA1_UCD_ChIP-seq 
                 GCAGATAAGGA 
                 TCCTTATCTGC 
               
               
                   
               
               
                 HOMEZ_1 
                 AAAACATCGTTTTTAAG 
                 CTTAAAAACGATGTTTT 
               
               
                   
               
               
                 AHR::ARNT_2 
                 GGGGATCGCGTGACAA 
                 GGGTTGTCACGCGATCC 
               
               
                   
                 CCC 
                 CC 
               
               
                   
               
               
                 HOXC4_1 
                 CGAATTAATTAACAATA 
                 TATTGTTAATTAATTCG 
               
               
                   
               
               
                 GMEB1_Gmeb1_1745_PBM|GMEB1_pTH8318_PBM 
                 TGACGTACA 
                 TGTACGTCA 
               
               
                   
               
               
                 ETV5_GM12878_ETS1_HudsonAlpha_ChIP-seq 
                 GAACTACAATTCCCAGA 
                 GCCTTCTGGGAATTGTA 
               
               
                   
                 AGGC 
                 GTTC 
               
               
                   
               
               
                 POU3F3_PO3F1_f1_HocoMoco 
                 CATTGTAATGCAAA 
                 TTTGCATTACAATG 
               
               
                   
               
               
                 LHX1_LHX3_f1_HocoMoco 
                 AAAATTAATTAAT 
                 ATTAATTAATTTT 
               
               
                   
               
               
                 RXRA_known8 
                 AGGTCACGGAGAGGTC 
                 TGACCTCTCCGTGACCT 
               
               
                   
                 A 
                   
               
               
                   
               
               
                 OBOX1_1 
                 GTAGTTAATCCCCTTAA 
                 TTAAGGGGATTAACTAC 
               
               
                   
               
               
                 NR3C1_known7 
                 CCACGAAGAACACCATG 
                 GGGGTGGGGACATGGT 
               
               
                   
                 TCCCCACCCC 
                 GTTCTTCGTGG 
               
               
                   
               
               
                 KLF14_KLF13_1_SELEX|KLF13_1 
                 ATGCCACGCCCCTTTTTG 
                 CAAAAAGGGGCGTGGC 
               
               
                   
                   
                 AT 
               
               
                   
               
               
                 NHLH2_HLH4C_da_SANGER_5_4_FBgn0011277_B1H|TCF4 
                 CCACCTGAGCCC 
                 GGGCTCAGGTGG 
               
               
                 HLH4C_da_SANGER_5_4_FBgn0000413_B1H 
                   
                   
               
               
                   
               
               
                 NR3C1_known4 
                 AGAACACCCTGTACC 
                 GGTACAGGGTGTTCT 
               
               
                   
               
               
                 MEIS1_MEIS3_1_SELEX|ME153_2 
                 CCTGTCAA 
                 TTGACAGG 
               
               
                   
               
               
                 PRDM16_V$EVI1_01_Transfac|RUNX1_2 
                 AGATAAGATAAGATAA 
                 TTATCTTATCTTATCT 
               
               
                   
               
               
                 FOXD1_FOXB1_1_SELEX|FOXB1_1 
                 GAATGACACAGCGA 
                 TCGCTGTGTCATTC 
               
               
                   
               
               
                 POU3F3_MA0254.1_DNasel 
                 TATGCA 
                 TGCATA 
               
               
                   
               
               
                 FOSL1_MA0476.1_ChIP-seq 
                 AATGAGTCACA 
                 TGTGACTCATT 
               
               
                   
               
               
                 E2F1_E2F1_3_SELEX 
                 TTTTGGCGCCAAAA 
                 TTTTGGCGCCAAAA 
               
               
                   
               
               
                 BARHL2_CG11085_Cell_FBgn0030408_B1H|BSX_Bsh_Cell_ 
                 CCAATTAAA 
                 TTTAATTGG 
               
               
                 FBgn0000529_B1H 
                   
                   
               
               
                   
               
               
                 ALX1_CG9876_Cell_FBgn0034821_B1H|SHOX_Pph13_Cell 
                 ACTAATTA 
                 TAATTAGT 
               
               
                 _FBgn0023489_B1H 
                   
                   
               
               
                   
               
               
                 FOXH1_MA0479.1_ChIP-seq 
                 TCCAATCCACA 
                 TGTGGATTGGA 
               
               
                   
               
               
                 GATA2_V$GATA6_01_Transfac|GATA_known9 
                 AAAGATAAGC 
                 GCTTATCTTT 
               
               
                   
               
               
                 DMRT2_1 
                 ACAATGTATCAATTTG 
                 CAAATTGATACATTGT 
               
               
                   
               
               
                 DMRTC2_pTH9250_PBM|DMRTA2_pTH9300_PBM 
                 AATGTATC 
                 GATACATT 
               
               
                   
               
               
                 YY2_V$YY1_02_Transfac|YY1_known2 
                 AGCAGCCAAGATGGCC 
                 CCGCGGCCATCTTGGCT 
               
               
                   
                 GCGG 
                 GCT 
               
               
                   
               
               
                 AC226150.2_pTH5972_PBM 
                 CTTGTCAA 
                 TTGACAAG 
               
               
                   
               
               
                 TBPL2_Mv129_ChIP-seq 
                 TATGCAAATA 
                 TATTTGCATA 
               
               
                   
               
               
                 NHLH2_NHLH1_2_SELEX|NHLH2_NHLH1_1_SELEX|NHLH1 
                 CGCAGCTGCG 
                 CGCAGCTGCG 
               
               
                 _4|NHLH1_5 
                   
                   
               
               
                   
               
               
                 PAX9_MA0014.2_ChIP-seq 
                 GAGGGCAGCCAAGCGT 
                 GTCACGCTTGGCTGCCC 
               
               
                   
                 GAC 
                 TC 
               
               
                   
               
               
                 ENSG00000250811_tgo_sim_SANGER_5_F Bgn0004666_61 
                 GGTCACGTAC 
                 GTACGTGACC 
               
               
                 H|ARNT2_tgo_trh_SANGER_5_FBgn0015014_B1H|ARNT2 
                   
                   
               
               
                 _tgo_sim_SANGER_5_FBgn0015014_B1H 
                   
                   
               
               
                   
               
               
                 ETS_known1 
                 AAAACAGGAAGTACGT 
                 ACGTACTTCCTGTTTT 
               
               
                   
               
               
                 NR2E3_pTH5877_PBM 
                 GAGATCAA 
                 TTGATCTC 
               
               
                   
               
               
                 HNF4_known5|PPARA_4|HNF4_known6|HNF4_known7 
                 GGGTCAAAGGTCA 
                 TGACCTTTGACCC 
               
               
                   
               
               
                 FOXL1_3 
                 ACCTTTGTTTACATTTA 
                 TAAATGTAAACAAAGGT 
               
               
                   
               
               
                 HINFP_H|NFP1_2_SELEX|HINFP_3 
                 GCGGACGTTGCAACGTC 
                 GCGGACGTTGCAACGTC 
               
               
                   
                 CGC 
                 CGC 
               
               
                   
               
               
                 CCNT2_disc1 
                 CTGGGGGGGGCAGATA 
                 TGCCTTATCTGCCCCCCC 
               
               
                   
                 AGGCA 
                 CAG 
               
               
                   
               
               
                 SP9_CG5669_SOLEXA_5_FBgn0039169_B1H 
                 AGTGGGCGGGGCCAA 
                 TTGGCCCCGCCCACT 
               
               
                   
               
               
                 NFYA_MA0313.1_COMPILED 
                 ACCAA 
                 TTGGT 
               
               
                   
               
               
                 TEF_HLF_1_SELEX|HLF_3 
                 CATTACGTAACC 
                 GGTTACGTAATG 
               
               
                   
               
               
                 SIX6_Six3_1732_PBM 
                 GTATCAC 
                 GTGATAC 
               
               
                   
               
               
                 TEF_DBP_1_SELEX|DBP_2 
                 CATTACGTAACA 
                 TGTTACGTAATG 
               
               
                   
               
               
                 SPI1_disc2|BCL_disc4|PAX5_disc3|RXRA_disc4 
                 GGAAGTGAAA 
                 TTTCACTTCC 
               
               
                   
               
               
                 PAX5_pTH8981_PBM 
                 ACCGTGACCAC 
                 GTGGTCACGGT 
               
               
                   
               
               
                 E2F_known19 
                 GCCCGTTTCGCGCCAA 
                 TTGGCGCGAAACGGGC 
               
               
                   
               
               
                 CTCFL_disc1 
                 CAGGGGGCGC 
                 GCGCCCCCTG 
               
               
                   
               
               
                 MEF2B_MEF2A_f1_HocoMoco 
                 GCTATAAATAGAAC 
                 GTTCTATTTATAGC 
               
               
                   
               
               
                 POU2F2_known13 
                 TACTGATTATGCATATTT 
                 TTAAAAATATGCATAAT 
               
               
                   
                 TAA 
                 CAGTA 
               
               
                   
               
               
                 ZNF35_Zfp105_2634_PBM 
                 CAATAAACAA 
                 TTGTTTATTG 
               
               
                   
               
               
                 POU3F3_V$TST1_01_Transfac|CCDC6_1 
                 GAGGAATTAAAATAC 
                 GTATTTTAATTCCTC 
               
               
                   
               
               
                 ARID5A_pTH5121_PBM 
                 GCAATATCGA 
                 TCGATATTGC 
               
               
                   
               
               
                 MAFK_pTH5098_PBM 
                 AATTGCTGAC 
                 GTCAGCAATT 
               
               
                   
               
               
                 NFKB2_NFKB2_1_SELEX|NFKB1_NFKB1_1_SELEX|NFKB_kn 
                 AGGGGAATCCCCT 
                 AGGGGATTCCCCT 
               
               
                 own10|NFKB_known11 
                   
                   
               
               
                   
               
               
                 TLX3_Tlx2_3498_PBM|DBX2_pTH6051_PBM|LHX1_Lim3_ 
                 ATTAATTA 
                 TAATTAAT 
               
               
                 Cell_FBgn0002023_B1H|DBX2_Dbx1_3486_PBM|EN2_en_ 
                   
                   
               
               
                 FlyReg_FBgn0000577_B1H 
                   
                   
               
               
                   
               
               
                 NPAS2_CLOCK_1_SELEX|CLOCK_1 
                 AACACGTGTT 
                 AACACGTGTT 
               
               
                   
               
               
                 ATF1_V$TAXCREB_02_Transfac|ATF3_known5 
                 ATGACGCATACCCCC 
                 GGGGGTATGCGTCAT 
               
               
                   
               
               
                 JUN_kay_Jra_SANGER_5_FBgn0001291_B1H|JUN_MA049 
                 GATGAGTCACC 
                 GGTGACTCATC 
               
               
                 1.1_ChIP-seq 
                   
                   
               
               
                   
               
               
                 E2F4_K562b_E2F4_UCD_ChIP-seq 
                 GGCGGGAAATTGGAA 
                 TTCCAATTTCCCGCC 
               
               
                   
               
               
                 BARHL2_BARHL2_4_SELEX|BARHL2_Barhl1_1_SELEX|BAR 
                 ACCGTTTAGC 
                 GCTAAACGGT 
               
               
                 HL2_5|BARHL1_2 
                   
                   
               
               
                   
               
               
                 DMRTC2_1 
                 CAACAATGTAACAA 
                 TTGTTACATTGTTG 
               
               
                   
               
               
                 RARG_RARA_3_SELEX|RARA_4 
                 AGGTCATGCAAAGGTCA 
                 TGACCTTTGCATGACCT 
               
               
                   
               
               
                 FOXA_known2 
                 AAAAACAAACA 
                 TGTTTGTTTTT 
               
               
                   
               
               
                 NFIL3_MA0025.1_SELEX 
                 ACGTTACATAA 
                 TTATGTAACGT 
               
               
                   
               
               
                 POU3F3_V$OCT1_06_Transfac|POU2F2_known6 
                 CAAAATGACATGCA 
                 TGCATGTCATTTTG 
               
               
                   
               
               
                 TFCP2_3 
                 CCAGCTCAAACCAGC 
                 GCTGGTTTGAGCTGG 
               
               
                   
               
               
                 GCM1_1 
                 AATGATGCGGGTACGA 
                 TCGTACCCGCATCATT 
               
               
                   
               
               
                 HNF4_disc4 
                 AGCAAACAG 
                 CTGTTTGCT 
               
               
                   
               
               
                 ARNT2_tgo_tai_SANGER_5_FBgn0015014_B1H|BHLHE40_ 
                 GCACGTGAC 
                 GTCACGTGC 
               
               
                 BHE40_f2_HocoMoco 
                   
                   
               
               
                   
               
               
                 STAT3_MCF10A-Er-Src_STAT3_Harvard#Weissman_ChIP- 
                 CACTTCCGGGAAATG 
                 CATTTCCCGGAAGTG 
               
               
                 seq|STAT3_MCF10A-Er-Src_STAT3_Stanford_ChIP-seq 
                   
                   
               
               
                   
               
               
                 TBX3_TBX3_f1_HocoMoco 
                 AGGTAGAGAATTAGGT 
                 TTTTTATCACCTAATTCT 
               
               
                   
                 GATAAAAA 
                 CTACCT 
               
               
                   
               
               
                 SREBF2_V$SREBP1_02_Transfac 
                 GTGGGGTGATA 
                 TATCACCCCAC 
               
               
                   
               
               
                 HOXC10_Hoxd11_3873_PBM|HOXC10_Hoxd10_2368_PB 
                 GTCATAAA 
                 TTTATGAC 
               
               
                 M 
                   
                   
               
               
                   
               
               
                 CR936877.3_Rxra_1035_PBM 
                 AGGGGTCACG 
                 CGTGACCCCT 
               
               
                   
               
               
                 EOMES_Eomes_0921_PBM|EOMES_TBR1_1_SELEX|TBR1_ 
                 AGGTGTGAAA 
                 TTTCACACCT 
               
               
                 1 
                   
                   
               
               
                   
               
               
                 PAX9_PAX8_f1_HocoMoco 
                 CCCGCTTCAGTGAC 
                 GTCACTGAAGCGGG 
               
               
                   
               
               
                 CTCF_disc8 
                 CCACAGGCAGGTGC 
                 GCACCTGCCTGTGG 
               
               
                   
               
               
                 ESR2_ESR2_si_HocoMoco 
                 AGGTCAC 
                 GTGACCT 
               
               
                   
               
               
                 POU3F3_POU3F2_2_SELEX|POU3F3_POU3F1_1_SELEX|PO 
                 TAATTTGCATAA 
                 TTATGCAAATTA 
               
               
                 U3F1_2|POU3F2_6 
                   
                   
               
               
                   
               
               
                 CEBPA_pTH5253_PBM 
                 TTGCGAAA 
                 TTTCGCAA 
               
               
                   
               
               
                 TEAD3_TEAD3_1_SELEX|TEAD3_1 
                 ACATTCCTCGCATTCCA 
                 TGGAATGCGAGGAATG 
               
               
                   
                   
                 T 
               
               
                   
               
               
                 HOXC5_Antp_Cell_FBgn0000095_B1H|EMX2_Ems_Cell_FB 
                 TCATTAAA 
                 TTTAATGA 
               
               
                 gn0000576_B1H|HOXG_Antp_SOLEXA_FBgn0000095_B1 
                   
                   
               
               
                 H|HOXC5_Ubx_SOLEXA_FBgn0003944_B1H 
                   
                   
               
               
                   
               
               
                 SMC3_disc2 
                 ACCAGCAGG 
                 CCTGCTGGT 
               
               
                   
               
               
                 SOX11_SOX4_f1_HocoMoco 
                 CGCTTTGTTCTC 
                 GAGAACAAAGCG 
               
               
                   
               
               
                 RARG_RARA_1_SELEX|RARA_2 
                 AAAGGTCATTTGAGGTC 
                 TGACCTCAAATGACCTT 
               
               
                   
                 A 
                 T 
               
               
                   
               
               
                 GATA2_MA0482.1_ChIP-seq 
                 GGGAGATAAGA 
                 TCTTATCTCCC 
               
               
                   
               
               
                 MYOD1_MYOG_f1_HocoMoco 
                 GCAGCAGCTGTCA 
                 TGACAGCTGCTGC 
               
               
                   
               
               
                 FOXO1_2 
                 AATGTAAACAACAC 
                 GTGTTGTTTACATT 
               
               
                   
               
               
                 NFAT_2 
                 AATTTTCCAC 
                 GTGGAAAATT 
               
               
                   
               
               
                 ZNF143_disc3 
                 ACTACAACTCCCAGCAG 
                 GCCTGCTGGGAGTTGTA 
               
               
                   
                 GC 
                 GT 
               
               
                   
               
               
                 AR_MCR_f1_HocoMoco 
                 AAGAACAGGTTGTTGTA 
                 TACAACAACCTGTTCTT 
               
               
                   
               
               
                 TEF_Hlf_1_SELEX|HLF_4 
                 GATTACGTAACC 
                 GGTTACGTAATC 
               
               
                   
               
               
                 EVX2_pTH6287_PBM 
                 ACTAATTACC 
                 GGTAATTAGT 
               
               
                   
               
               
                 MZF1_MA0056.1_SELEX|MZF1_3 
                 TCCCCA 
                 TGGGGA 
               
               
                   
               
               
                 RFX8_RFX1_f1_HocoMoco 
                 GTTGCCAGGGAA 
                 TTCCCTGGCAAC 
               
               
                   
               
               
                 ZNF143_ZNF143_1_SELEX|ZNF143_known2 
                 CAATGCATTGTGGGTA 
                 TACCCACAATGCATTG 
               
               
                   
               
               
                 AP1_disc2 
                 GCCAATCAGA 
                 TCTGATTGGC 
               
               
                   
               
               
                 BHLHA15_dimm_da_SANGER_5_FBgn0023091_B1H|TCF4 
                 ACCATATGGCG 
                 CGCCATATGGT 
               
               
                 _dimm_da_SANGER_5_FBgn0000413_B1H 
                   
                   
               
               
                   
               
               
                 NR3C1_known3 
                 AGAACATCATGTACT 
                 AGTACATGATGTTCT 
               
               
                   
               
               
                 GATA_known12 
                 GGATA 
                 TATCC 
               
               
                   
               
               
                 FOXD1_V$ FOXD3_01_Transfac|FOXD3_1 
                 AAACAAACAATC 
                 GATTGTTTGTTT 
               
               
                   
               
               
                 EGR1_known7 
                 AATGCGGGGGCGGA 
                 TCCGCCCCCGCATT 
               
               
                   
               
               
                 CR936877.3_RXRA_f1_HocoMoco|PPARA_PPARA_f2_Hoc 
                 AGGTCAAAGGTCA 
                 TGACCTTTGACCT 
               
               
                 oMoco|NR2C2_NR2C2_a_HocoMoco 
                   
                   
               
               
                   
               
               
                 FOXO6_FOXO3_3_SELEX|FOXO3_6 
                 GTGTGGGGAAA 
                 TTTCCCCACAC 
               
               
                   
               
               
                 ENSG00000187728_Tcf21_1_SELEX|TCF21_1 
                 ACAACAGCTGTTGC 
                 GCAACAGCTGTTGT 
               
               
                   
               
               
                 REST_known3 
                 GCGCTGTCCGTGGTGCT 
                 TCAGCACCACGGACAGC 
               
               
                   
                 GA 
                 GC 
               
               
                   
               
               
                 RARG_Rara_3_SELEX|RARA_10 
                 AAGGTCAAAAGGTCA 
                 TGACCTTTTGACCTT 
               
               
                   
               
               
                 BHLHE40_Bhlhb2_1_SELEX|MITF_pTH2885_PBM|BHLHE4 
                 GTCACGTGAC 
                 GTCACGTGAC 
               
               
                 0_BHLHE41_1_SELEX|ARNT2_ARNTL_LSELEX|MYC_disc1 
                   
                   
               
               
                 |ATF3_disc1|NFE2_disc2|SIRT6_disc1|ARNTL_1|BHLHE41 
                   
                   
               
               
                 _2|BHLHE40_known4 
                   
                   
               
               
                   
               
               
                 HOXA3_3 
                 ACTAATTACCTCAA 
                 TTGAGGTAATTAGT 
               
               
                   
               
               
                 LMX1A_Lmx1a_2238_PBM|LMX1A_LMX1B_1_SELEX|LMX 
                 TTAATTAA 
                 TTAATTAA 
               
               
                 1A_LMX1A_1_SELEX|LHX1_Lhx4_1_SELEX|HOXA1_pTH54 
                   
                   
               
               
                 86_PBM|SHOX_Uncx4_PBM|HOXB2_pTH5491_PBM|LMX 
                   
                   
               
               
                 1A_2|LMX16_2|LHX4_2 
                   
                   
               
               
                   
               
               
                 SOX1_SOX2_f1_HocoMoco 
                 ATTTGCATAACAATGG 
                 CCATTGTTATGCAAAT 
               
               
                   
               
               
                 IRF5_IRF5_f1_HocoMoco 
                 TAAAGGAAAGCCAAAA 
                 TCACTTTTGGCTTTCCTT 
               
               
                   
                 GTGA 
                 TA 
               
               
                   
               
               
                 IRF_known12 
                 ATAAACCGAAACCAA 
                 TTGGTTTCGGTTTAT 
               
               
                   
               
               
                 SRF_H1-hESC_SRF_HudsonAlpha_ChIP-seq 
                 CCATATAAGGCAAA 
                 TTTGCCTTATATGG 
               
               
                   
               
               
                 ATF3_known11 
                 ATGACG 
                 CGTCAT 
               
               
                   
               
               
                 MYOG_1 
                 CAGCTGCC 
                 GGCAGCTG 
               
               
                   
               
               
                 LHX8_pTH6556_PBM 
                 GTAATCAA 
                 TTGATTAC 
               
               
                   
               
               
                 FOXO6_foxo_SANGER_10_FBgn0038197_B1H 
                 TCGTAAACA 
                 TGTTTACGA 
               
               
                   
               
               
                 PRRX2_1 
                 AGGTTAATTGGTTAAA 
                 TTTAACCAATTAACCT 
               
               
                   
               
               
                 SOX3_1 
                 AAACAATGACATTGTTT 
                 AAACAATGTCATTGTTT 
               
               
                   
               
               
                 CTCF_GM12878_CTCF_Broad_ChIP-seq 
                 GCCCCCTGGTGGCCA 
                 TGGCCACCAGGGGGC 
               
               
                   
               
               
                 IRX3_2 
                 AATATACATGTAATATT 
                 AATATTACATGTATATT 
               
               
                   
               
               
                 SIX5_disc3 
                 AAACTACATTTCCCA 
                 TGGGAAATGTAGTTT 
               
               
                   
               
               
                 NFIA_NFIB_1_SELEX|NFIB_1 
                 CTGGCACTGTGCCAA 
                 TTGGCACAGTGCCAG 
               
               
                   
               
               
                 HOXC9_I$ABDB_01_Transfac 
                 GCGTTTATGGCGAC 
                 GTCGCCATAAACGC 
               
               
                   
               
               
                 TFAP2_disc2 
                 CATGCCCTGGGGCCA 
                 TGGCCCCAGGGCATG 
               
               
                   
               
               
                 IRF2_IRF2_f1_HocoMoco 
                 GGAAAGTGAAAGCA 
                 TGCTTTCACTTTCC 
               
               
                   
               
               
                 STAT4_MA0518.1_ChIP-seq 
                 CCATTTCCTGGAAA 
                 TTTCCAGGAAATGG 
               
               
                   
               
               
                 HOXC10_HOXC10_3_SELEX|HOXC10_4 
                 ATTTTACGAC 
                 GTCGTAAAAT 
               
               
                   
               
               
                 PBX3_known1 
                 CTACCATCAATC 
                 GATTGATGGTAG 
               
               
                   
               
               
                 POU2F2_disc2 
                 CCCCCTCACCTGC 
                 GCAGGTGAGGGGG 
               
               
                   
               
               
                 CTCF_HMF_CTCF_UW_ChIP-seq 
                 CCACCAGAGGG 
                 CCCTCTGGTGG 
               
               
                   
               
               
                 ZNF143_V$STAF_02_Transfac 
                 ATTTCCCATCATGCCTTG 
                 TCGCAAGGCATGATGG 
               
               
                   
                 CGA 
                 GAAAT 
               
               
                   
               
               
                 TCF3_5 
                 CACCTGCC 
                 GGCAGGTG 
               
               
                   
               
               
                 RARG_RARA_2_SELEX|RARA_3 
                 CATTGACCTTTTGACCTC 
                 GAGGTCAAAAGGTCAA 
               
               
                   
                   
                 TG 
               
               
                   
               
               
                 NFIA_NFIX_3_SELEX 
                 AGTGCCAAT 
                 ATTGGCACT 
               
               
                   
               
               
                 NFIA_NFIX_2_SELEX 
                 CGTGCCAAG 
                 CTTGGCACG 
               
               
                   
               
               
                 SIN3A_disc1 
                 TCAGCACCACGGACA 
                 TGTCCGTGGTGCTGA 
               
               
                   
               
               
                 ZSCAN16_ZNF435_1_SELEX|ZSCAN16_1 
                 AGGTGTTCTGTTAACAC 
                 AGTGTTAACAGAACACC 
               
               
                   
                 T 
                 T 
               
               
                   
               
               
                 EP300_disc7 
                 ATGACACA 
                 TGTGTCAT 
               
               
                   
               
               
                 ZNF652_Zfp652_1_SELEX|ZNF652_1 
                 AGAAAGGGTTAAT 
                 ATTAACCCTTTCT 
               
               
                   
               
               
                 ARID3C_retn_SANGER_5_FBgn0004795_B1H 
                 AATCAAAA 
                 TTTTGATT 
               
               
                   
               
               
                 HOXD11_1 
                 AGGATTTTACGACCTTA 
                 TAAGGTCGTAAAATCCT 
               
               
                   
               
               
                 AR_MA0007.2_ChIP-seq 
                 AAGAACAGAATGTTC 
                 GAACATTCTGTTCTT 
               
               
                   
               
               
                 ZBTB7B_ZBT7B_si_HocoMoco 
                 CGGAGAGGGGGAGGG 
                 GCCCCCCCCCTCCCCCTC 
               
               
                   
                 GGGGGGC 
                 TCCG 
               
               
                   
               
               
                 TCF7L2_known3 
                 AACATCAAAGG 
                 CCTTTGATGTT 
               
               
                   
               
               
                 HOXB3_1 
                 TCCAACTAATTAGCTCA 
                 TGAGCTAATTAGTTGGA 
               
               
                   
               
               
                 POU1F1_PIT1_f1_HocoMoco 
                 ATATATTCATGAG 
                 CTCATGAATATAT 
               
               
                   
               
               
                 PAX6_PAX6_1_SELEX|PAX6_5 
                 TGTGCAGTCATGCGTGA 
                 TTTCACGCATGACTGCA 
               
               
                   
                 AA 
                 CA 
               
               
                   
               
               
                 TFDP1_TFDP1_f1_HocoMoco 
                 AAATGGCGGGAAAC 
                 GTTTCCCGCCATTT 
               
               
                   
               
               
                 NKX2-5_Nkx2-4_3074_PBM|NKX2- 
                 AACCACTTAA 
                 TTAAGTGGTT 
               
               
                 5_V$NKX22_01_Transfac|NKX3-1_Nkx3- 
                   
                   
               
               
                 1_2923_PBM|NKX2-5_Nkx2-6_3437_PBM|NKX2-2_1 
                   
                   
               
               
                   
               
               
                 HEY1_HEY2_f1_HocoMoco 
                 GGGGGCACGTGGCATT 
                 TAATGCCACGTGCCCCC 
               
               
                   
                 A 
                   
               
               
                   
               
               
                 E2F7_E2F7_1_SELEX|E2F7_1 
                 TTTTCCCGCCAAAA 
                 TTTTGGCGGGAAAA 
               
               
                   
               
               
                 IKZF2_3 
                 ATAAGGAAAAA 
                 TTTTTCCTTAT 
               
               
                   
               
               
                 TCF7L1_TF7L2_f1_HocoMoco 
                 AAGATCAAAGGG 
                 CCCTTTGATCTT 
               
               
                   
               
               
                 STAT1_Mv125_ChIP-seq 
                 AAACGAAACT 
                 AGTTTCGTTT 
               
               
                   
               
               
                 GCM1_GCM1_1_SELEX|GCM1_2 
                 CATGCGGGTA 
                 TACCCGCATG 
               
               
                   
               
               
                 SOX17_3 
                 ATAAACAATTAATCA 
                 TGATTAATTGTTTAT 
               
               
                   
               
               
                 ONECUT3_ONEC2_si_HocoMoco 
                 AAAAAAAATCAATAACA 
                 GTCTTGTTATTGATTTTT 
               
               
                   
                 AGAC 
                 TTT 
               
               
                   
               
               
                 NR2C2_Hr78_SANGER_5_FBgn0015239_B1H|CR936877.3_ 
                 AGAGGTCA 
                 TGACCTCT 
               
               
                 H1-hESC_RXRA_HudsonAlpha_ChIP-seq 
                   
                   
               
               
                   
               
               
                 HNF1A_1 
                 GGTTAATAATTAAC 
                 GTTAATTATTAACC 
               
               
                   
               
               
                 NFE2_MA0150.2_ChIP-seq 
                 CAGCATGACTCAGCA 
                 TGCTGAGTCATGCTG 
               
               
                   
               
               
                 HMGA1_1 
                 AATTTCC 
                 GGAAATT 
               
               
                   
               
               
                 T_V$BRACH_01_Transfac|T_1 
                 AATTTCACACCTAGGTG 
                 CTAGTCACACCTAGGTG 
               
               
                   
                 TGACTAG 
                 TGAAATT 
               
               
                   
               
               
                 FOXD1_pTH8896_PBM|FOXD1_YCR065W_570_DeBoer11| 
                 ATAAACAA 
                 TTGTTTAT 
               
               
                 FOXD1_MA0317.1_PBM,|FOXD3_pTH9057_PBM 
                   
                   
               
               
                   
               
               
                 SIX5_known 2 
                 AAAAATGATACCCCATC 
                 GATGGGGTATCATTTTT 
               
               
                   
               
               
                 EN2_MA0229.1_B1H|EN2_Inv_Cell_FBgn0001269_B1H 
                 TAATTAGA 
                 TCTAATTA 
               
               
                   
               
               
                 RUNX2_2 
                 AAACCACA 
                 TGTGGTTT 
               
               
                   
               
               
                 MEOX2_Btn_Cell_FBgn0014949_B1H|HOXC5_Dfd_SOLEXA 
                 CTTAATGA 
                 TCATTAAG 
               
               
                 _FBgn0000439_B1H|HOXC5_Zen_SOLEXA_F Bgn0004053_ 
                   
                   
               
               
                 B1H|HOXC5_Dfd_Cell_FBgn0000439_B1H 
                   
                   
               
               
                   
               
               
                 MEF2_known9 
                 ATGCTAAAAATAGATTG 
                 CAATCTATTTTTAGCAT 
               
               
                   
               
               
                 SP100_1 
                 ATTTTACGGAAAAT 
                 ATTTTCCGTAAAAT 
               
               
                   
               
               
                 NKX2-5_NKX22_si_HocoMoco 
                 AAACCACTTAAA 
                 TTTAAGTGGTTT 
               
               
                   
               
               
                 MZF1_V$MZF1_01_Transfac|MZF1_1 
                 AGTGGGGA 
                 TCCCCACT 
               
               
                   
               
               
                 TLX3_V$NCX_01_Transfac|TLX2_1 
                 CCAATTACCG 
                 CGGTAATTGG 
               
               
                   
               
               
                 GATA2_GATA4 _a_HocoMoco 
                 ACAGATAAC 
                 GTTATCTGT 
               
               
                   
               
               
                 CDX2_1 
                 AAAGTTTTATTGCC 
                 GGCAATAAAACTTT 
               
               
                   
               
               
                 AR_AR_1_SELEX|NR3C1_known15 
                 AGGTACACGGTGTACCC 
                 GGGTACACCGTGTACCT 
               
               
                   
               
               
                 ZEB1_MA0103.2_ChIP-seq 
                 CAGGTGAGG 
                 CCTCACCTG 
               
               
                   
               
               
                 NKX3-1_NKX31_si_HocoMoco 
                 AATAAGTATATAA 
                 TTATATACTTATT 
               
               
                   
               
               
                 HOXC12_1 
                 GAAATTTTACGACCTAA 
                 TTAGGTCGTAAAATTTC 
               
               
                   
               
               
                 SP9_SP3_1_SELEX|KLF14_KLF16_1_SELEX|KLF16_1|SP1_k 
                 GCCACGCCCCC 
                 GGGGGCGTGGC 
               
               
                 nown9 
                   
                   
               
               
                   
               
               
                 RFX8_RFX2_2_SELEX|RFX8_RFX4_2_SELEX|RFX8_Rfx2_2_S 
                 CGTTGCCTAGCAACG 
                 CGTTGCTAGGCAACG 
               
               
                 ELEX|RFX2_2|RFX5_known7|RFX2_4 
                   
                   
               
               
                   
               
               
                 GRHL1_GRHL1_1_SELEX|GRHL1_1 
                 AACCGGTTAAACCGGTT 
                 AACCGGTTTAACCGGTT 
               
               
                   
               
               
                 BARX1_pTH6449_PBM|BARX1_Barx2_3447_PBM|HMX1_ 
                 AGCAATTAA 
                 TTAATTGCT 
               
               
                 Hmx3_3490_PBM 
                   
                   
               
               
                   
               
               
                 PKNOX2_hth_SOLEXA_2_FBgn0001235_B1H 
                 CTGTCAAA 
                 TTTGACAG 
               
               
                   
               
               
                 CDX2_CDX2_1_SELEX|CDX2_CDX1_1_SELEX|CDX1_2|CDX 
                 GCAATAAAA 
                 TTTTATTGC 
               
               
                 2_3 
                   
                   
               
               
                   
               
               
                 PRDM16_V$EVI1_06_Transfac|RUNX1_1 
                 ACAAGATAA 
                 TTATCTTGT 
               
               
                   
               
               
                 ZIC4_ZIC3_1_SELEX|ZIC3_3 
                 GACCCCCCGCTGCGC 
                 GCGCAGCGGGGGGTC 
               
               
                   
               
               
                 NFY_known3 
                 ATCAGCCAATCAGAGC 
                 GCTCTGATTGGCTGAT 
               
               
                   
               
               
                 BX088580.2_SRP000712_Oct4_ChIP- 
                 ATTTGCATAACAATG 
                 CATTGTTATGCAAAT 
               
               
                 seq|POU5F1_disc1|POU5F1_known2 
                   
                   
               
               
                   
               
               
                 ESR2_ESR1_1_SELEX|ESRRA_known6 
                 AAGGTCACGGTGACCTG 
                 CAGGTCACCGTGACCTT 
               
               
                   
               
               
                 SOX2_SOX21_2_SELEX|SOX9_SOX8_1_SELEX|SOX9_SOX9_ 
                 AACAATGTGCAGTGTT 
                 AACACTGCACATTGTT 
               
               
                 2_SELEX|SOX21_3|SOX8_2|SOX9_4 
                   
                   
               
               
                   
               
               
                 PTF1A_Fer2_da_SANGER_5_FBgn0038402_B1H|TCF4_Fer 
                 CCAGCTGACG 
                 CGTCAGCTGG 
               
               
                 2_da_SANGER_5_F Bgn0000413_B1H 
                   
                   
               
               
                   
               
               
                 RORB_RORA_1_SELEX|RORA_6 
                 CAAAGGTCAAATTGAG 
                 TGACCTCAATTTGACCTT 
               
               
                   
                 GTCA 
                 TG 
               
               
                   
               
               
                 YY2_GM12892_YY1_HudsonAlpha_ChIP-seq 
                 AAGATGGCGGCCGCC 
                 GGCGGCCGCCATCTT 
               
               
                   
               
               
                 SPIC_Sfpi1_1034_PBM|SP11_disc1 
                 AAGAGGAAGT 
                 ACTTCCTCTT 
               
               
                   
               
               
                 ARID3C_MA0151.1_SELEX|ARID3A_1 
                 ATTAAA 
                 TTTAAT 
               
               
                   
               
               
                 NOBOX_Og2x_3719_PBM 
                 GCCAATTAA 
                 TTAATTGGC 
               
               
                   
               
               
                 ELF1_disc2 
                 CGCTTCCGGC 
                 GCCGGAAGCG 
               
               
                   
               
               
                 PKNOX1_1 
                 AAAGACCTGTCAATCC 
                 GGATTGACAGGTCTTT 
               
               
                   
               
               
                 NHLH2_pTH3037_PBM 
                 CACAGCTGCG 
                 CGCAGCTGTG 
               
               
                   
               
               
                 NR2C2_disc3 
                 ACCCCGGA 
                 TCCGGGGT 
               
               
                   
               
               
                 HOXB8_1 
                 ACCGGCAATTAATAAA 
                 TTTATTAATTGCCGGT 
               
               
                   
               
               
                 NR2C2_NR2C2_1_SELEX|NR2F2_NR2F6_2_SELEX|NR2F2_ 
                 GAGGTCAAAGGTCA 
                 TGACCTTTGACCTC 
               
               
                 NR2F6_3_SELEX|NR2F2_Nr2f6_2_SELEX|NR2C2_known1| 
                   
                   
               
               
                 NR2F6_2|NR2F6_3|NR2F6_5 
                   
                   
               
               
                   
               
               
                 TBX1_TBX1_4_SELEX 
                 TCTCACACCTCTGAGGT 
                 TTTCACACCTCAGAGGT 
               
               
                   
                 GTGAAA 
                 GTGAGA 
               
               
                   
               
               
                 TBPL2_V$TATA_01_Transfac|TATA_known2|TATA_known 
                 CCCCGCCTTTTATAC 
                 GTATAAAAGGCGGGG 
               
               
                 5 
                   
                   
               
               
                   
               
               
                 NR2C2_Mv97_ChIP-seq 
                 AAGTGCTTCCGGGTC 
                 GACCCGGAAGCACTT 
               
               
                   
               
               
                 SOX11_SOX4_1_SELEX|SOX4_2 
                 AACACTGCAATTGTTC 
                 GAACAATTGCAGTGTT 
               
               
                   
               
               
                 TFAP2A_AP2D_a_HocoMoco 
                 ACGCGCCTCGGGCG 
                 CGCCCGAGGCGCGT 
               
               
                   
               
               
                 SOX9_SOX10_1_SELEX|SOX9_SOX8_6_SELEX|SOX10_3|SO 
                 AACAATTGCAGTGTT 
                 AACACTGCAATTGTT 
               
               
                 X8_7 
                   
                   
               
               
                   
               
               
                 ZIC4_MA0118.1_SELEX 
                 GACCCCCCA 
                 TGGGGGGTC 
               
               
                   
               
               
                 MAFK_HepG2_MAFK_Stanford_ChIP-seq 
                 TGCTGACTCAGCA 
                 TGCTGAGTCAGCA 
               
               
                   
               
               
                 BRCA1_BRCA1_f1_HocoMoco 
                 CAACCCAAA 
                 TTTGGGTTG 
               
               
                   
               
               
                 MGA_MGA_2_SELEX|MGA_2 
                 AGGTGTGAAGTCACACC 
                 AGGTGTGACTTCACACC 
               
               
                   
                 T 
                 T 
               
               
                   
               
               
                 LHX9_1 
                 CCCATTAATTAATCACC 
                 GGTGATTAATTAATGGG 
               
               
                   
               
               
                 SOX13_SOX5_a_HocoMoco 
                 TAACAATA 
                 TATTGTTA 
               
               
                   
               
               
                 LMX1A_CG4328_Cell_FBgn0036274_B1H 
                 ATTTATTG 
                 CAATAAAT 
               
               
                   
               
               
                 FOXD1_V$FREAC3_01_Transfac|FOXC1_1 
                 GGTAAGTAAATAAACA 
                 TGTTTATTTACTTACC 
               
               
                   
               
               
                 SOX1_Sox1_3_SELEX|SOX2_SOX21_3_SELEX|SOX1_SOX14 
                 TCAATAACATTGA 
                 TCAATGTTATTGA 
               
               
                 _3_SELEX|SRY_SRY_3_SELEX|SOX14_4|SOX21_4|SRY_7|S 
                   
                   
               
               
                 OX1_4 
                   
                   
               
               
                   
               
               
                 STAT3_V$STAT3_01_Transfac|STAT3_V$STAT3_01_Transf 
                 AATCATTTCCGGGAAAT 
                 TGGCATTTCCCGGAAAT 
               
               
                 ac|STAT_known3 
                 GCCA 
                 GATT 
               
               
                   
               
               
                 TFAP2_known9 
                 ATTCCCTGAGGGGAA 
                 TTCCCCTCAGGGAAT 
               
               
                   
               
               
                 HOXC10_Hoxc10_2_SELEX|HOXC10_HOXC10_2_SELEX|HO 
                 GTAATAAAAA 
                 TTTTTATTAC 
               
               
                 XC10_3|HOXC10_6 
                   
                   
               
               
                   
               
               
                 KLF4_KLF4_f2_HocoMoco 
                 GCCCCGCCCA 
                 TGGGCGGGGC 
               
               
                   
               
               
                 T_3 
                 TCACACCTAGGTGTGA 
                 TCACACCTAGGTGTGA 
               
               
                   
               
               
                 EBF1_EBF1_1_SELEX|EBF1_known4 
                 ATTCCCAAGGGAAT 
                 ATTCCCTTGGGAAT 
               
               
                   
               
               
                 STAT1_HeLa-S3_STAT1_Stanford_ChIP-seq 
                 ATGGGATTTCCGGGAAA 
                 CCCATTTCCCGGAAATC 
               
               
                   
                 TGGG 
                 CCAT 
               
               
                   
               
               
                 HOXD1_1 
                 TAAACTAATTAGCTGTA 
                 TACAGCTAATTAGTTTA 
               
               
                   
               
               
                 BARX1_1 
                 AAAGTAATTAGTGAAT 
                 ATTCACTAATTACTTT 
               
               
                   
               
               
                 ZBTB33_disc2 
                 CTCGCGGGACC 
                 GGTCCCGCGAG 
               
               
                   
               
               
                 GATA2_GATA6_f2_HocoMoco 
                 AAGATAA 
                 TTATCTT 
               
               
                   
               
               
                 MEF2B_Mf26_ChIP-seq 
                 CTAAAAATAA 
                 TTATTTTTAG 
               
               
                   
               
               
                 HESX1_HESX1_2_SELEX|HESX1_2 
                 CTAATTGGCAATTAA 
                 TTAATTGCCAATTAG 
               
               
                   
               
               
                 DLX5_1 
                 CAGAGCTAATTACCCC 
                 GGGGTAATTAGCTCTG 
               
               
                   
               
               
                 ELF1_Eip74EF_FlyReg_FBgn0000567_B1H|EP300_disc10 
                 AACAGGAAGT 
                 ACTTCCTGTT 
               
               
                   
               
               
                 PKNOX2_PKNX1_si_HocoMoco 
                 AGCTTGATTGATG 
                 CATCAATCAAGCT 
               
               
                   
               
               
                 MEF2B_MEF2D_1_SELEX|MEF2D_1 
                 ACTATAAATAGA 
                 TCTATTTATAGT 
               
               
                   
               
               
                 JUN_pTH4337_PBM 
                 ATGACGCAA 
                 TTGCGTCAT 
               
               
                   
               
               
                 DLX1_DLX6_1_SELEX|DLX1_DLX4_1_SELEX|DLX1_DLX2_1_ 
                 CCAATTAC 
                 GTAATTGG 
               
               
                 SELEX|DLX1_DLX3_1_SELEX|DLX1_Dlx1_1_SELEX|DLX2_2| 
                   
                   
               
               
                 DLX3_2|DLX4_2|DLX6_1|DLX1_3 
                   
                   
               
               
                   
               
               
                 MEOX1_1 
                 CTGAGGTAATTACCTC 
                 GAGGTAATTACCTCAG 
               
               
                   
               
               
                 POU1F1_pTH3818_PBM 
                 ATAATTAATA 
                 TATTAATTAT 
               
               
                   
               
               
                 ELF3_ELF3_f1_HocoMoco 
                 ATTTCCTGTTTGCC 
                 GGCAAACAGGAAAT 
               
               
                   
               
               
                 SPDEF_SPDEF_6_SELEX|SPDEF_7 
                 GCAGAAAGAAGTAACA 
                 TGTTACTTCTTTCTGC 
               
               
                   
               
               
                 EP300_disc6 
                 ATTACATCA 
                 TGATGTAAT 
               
               
                   
               
               
                 POU2F2_disc1 
                 ATGCAAAT 
                 ATTTGCAT 
               
               
                   
               
               
                 FOXD1_FOXI1_2_SELEX|FOXI1_4 
                 ATGTTTACGGTAAACAA 
                 TTGTTTACCGTAAACAT 
               
               
                   
               
               
                 ZBTB3_Zbtb3_1048_PBM 
                 AATGCAGTG 
                 CACTGCATT 
               
               
                   
               
               
                 FOXD1_FOXD2_1_SELEX|FOXD2_1 
                 AAAAAATATTTACT 
                 AGTAAATATTTTTT 
               
               
                   
               
               
                 PPARA_MA0066.1_SELEX|RXRA_known5 
                 AGTAGGTCACCGTGACC 
                 GTAGGTCACGGTGACCT 
               
               
                   
                 TAC 
                 ACT 
               
               
                   
               
               
                 HOXC13_1 
                 AAAGCTCGTAAAATTT 
                 AAATTTTACGAGCTTT 
               
               
                   
               
               
                 ALX1_pTH6636_PBM 
                 ATTGTACAAT 
                 ATTGTACAAT 
               
               
                   
               
               
                 CDX2_Cdx2_4272_PBM 
                 GGCAATAAA 
                 TTTATTGCC 
               
               
                   
               
               
                 GMEB2_pTH9219_PBM 
                 CTTACGTCA 
                 TGACGTAAG 
               
               
                   
               
               
                 NFE2L1_NF2L1_f1_HocoMoco 
                 AATGACT 
                 AGTCATT 
               
               
                   
               
               
                 ESRRG_SRP000217_Esrrb_ChIP-seq 
                 AGGTCAAGGTCACCC 
                 GGGTGACCTTGACCT 
               
               
                   
               
               
                 C13orf38-SOHLH2_pTH5058_PBM 
                 AGCCCGTGCG 
                 CGCACGGGCT 
               
               
                   
               
               
                 GATA_known14 
                 CTGGTGGGGACAGATA 
                 CTTATCTGTCCCCACCAG 
               
               
                   
                 AG 
                   
               
               
                   
               
               
                 ATOH7_cato_da_SANGER_10_FBgn0024249_B1H|TCF4_ca 
                 CACAGCTGAC 
                 GTCAGCTGTG 
               
               
                 to_da_SANGER_10_FBgn0000413_B1H 
                   
                   
               
               
                   
               
               
                 MYC_known8 
                 CGCGCGTGGC 
                 GCCACGCGCG 
               
               
                   
               
               
                 MLL_pTH7031_PBM 
                 GGGGGCGTAA 
                 TTACGCCCCC 
               
               
                   
               
               
                 HOXC5_Scr_Cell_FBgn0003339_B1H 
                 CGTTAATGA 
                 TCATTAACG 
               
               
                   
               
               
                 E2F_known7 
                 CCGCCAAA 
                 TTTGGCGG 
               
               
                   
               
               
                 SOX18_SOX18_2_SELEX|SOX18_3 
                 ATCAATGCAATTGAT 
                 ATCAATTGCATTGAT 
               
               
                   
               
               
                 MAFBA_SANGER_5_FBgn0000964_B1H 
                 GCTGAGTCAGCA 
                 TGCTGACTCAGC 
               
               
                   
               
               
                 HSF_known3 
                 ATTCTAGAAATTTCTCC 
                 GGAGAAATTTCTAGAAT 
               
               
                   
               
               
                 JUN_HUVEC_CJUN_Stanford_ChIP-seq 
                 AAAGGGATGACTCAT 
                 ATGAGTCATCCCTTT 
               
               
                   
               
               
                 AP1_disc5 
                 ACTCACCAC 
                 GTGGTGAGT 
               
               
                   
               
               
                 CXXC1_pTH7032_PBM 
                 CCGCTAA 
                 TTAGCGG 
               
               
                   
               
               
                 MYOD1_2 
                 ACCACCTGTC 
                 GACAGGTGGT 
               
               
                   
               
               
                 HNF4G_HNF4G_f1_HocoMoco 
                 GGCCAAAGTCCA 
                 TGGACTTTGGCC 
               
               
                   
               
               
                 KDM2B_pTH9191_PBM 
                 GCGTAAATA 
                 TATTTACGC 
               
               
                   
               
               
                 SOX12_1 
                 GTTTAGAACAATTA 
                 TAATTGTTCTAAAC 
               
               
                   
               
               
                 MYOD1_HLH1_PBM 
                 CAGCTGTC 
                 GACAGCTG 
               
               
                   
               
               
                 BRCA1_disc1|ZBTB33_disc1|ETS_disc3|CHD2_disc1|NR3C 
                 TCTCGCGAGA 
                 TCTCGCGAGA 
               
               
                 1_disc3 
                   
                   
               
               
                   
               
               
                 MAZ_1 
                 CCCTCCCC 
                 GGGGAGGG 
               
               
                   
               
               
                 RARG_Rarg_2_SELEX|RARG_8 
                 AAGGTCATCTAAAGGTC 
                 TGACCTTTAGATGACCT 
               
               
                   
                 A 
                 T 
               
               
                   
               
               
                 ETS_disc1 
                 AACTACAACTCCCA 
                 TGGGAGTTGTAGTT 
               
               
                   
               
               
                 TFAP2A_AP2A_U_HocoMoco 
                 GCCTCAGGC 
                 GCCTGAGGC 
               
               
                   
               
               
                 ZBTB16_1 
                 GAACAGATCAAACTTTA 
                 TTGTATTGAAGCTAAAG 
               
               
                   
                 GCTTCAATACAA 
                 TTTGATCTGTTC 
               
               
                   
               
               
                 EGR3_sr_SOLEXA_5_FBgn0003499_B1H|EGR3_sr_SANGER 
                 CCCCGCCCACGCAC 
                 GTGCGTGGGCGGGG 
               
               
                 _5_FBgn0003499_B1H 
                   
                   
               
               
                   
               
               
                 HNF4_known10 
                 AGTTCA 
                 TGAACT 
               
               
                   
               
               
                 GLIS2_1 
                 CTGTGGGGGGTCGATA 
                 TATCGACCCCCCACAG 
               
               
                   
               
               
                 CTCF_AG09309_CTCF_UW_ChIP-seq 
                 CACCAGGGGGCGCCAG 
                 CTGGCGCCCCCTGGTG 
               
               
                   
               
               
                 EN2_EN1_4_SELEX|EN1_7 
                 TAATTAAGCAATTA 
                 TAATTGCTTAATTA 
               
               
                   
               
               
                 SMARCC1_HeLa-S3_BAF170_Stanford_ChIP-seq 
                 GCCTGCTGGGAGTTGTA 
                 GGACTACAACTCCCAGC 
               
               
                   
                 GTCC 
                 AGGC 
               
               
                   
               
               
                 NFE2_V$NFE2_01_Transfac|MAF_known2|NFE2L2_3 
                 ATGACTCAGCA 
                 TGCTGAGTCAT 
               
               
                   
               
               
                 FOXD1_V$FREAC7_01_Transfac|FOXL1_1 
                 ATCTTGTTTATGTATA 
                 TATACATAAACAAGAT 
               
               
                   
               
               
                 MEF2B_V$MEF2_02_Transfac|MEF2_known3 
                 AGGTGCTATTTTTAGCA 
                 TCCGGTGCTAAAAATAG 
               
               
                   
                 CCGGA 
                 CACCT 
               
               
                   
               
               
                 MAFB_Mafb_2_SELEX|MAF_known11 
                 AATGCTGACTCAGCACA 
                 TGTGCTGAGTCAGCATT 
               
               
                   
               
               
                 STAT3_STAT3_si_HocoMoco|STAT3_SRP000217_Stat3_ChI 
                 CTTCCAGGAAG 
                 CTTCCTGGAAG 
               
               
                 P-seq 
                   
                   
               
               
                   
               
               
                 TEF_HLF_si_HocoMoco 
                 CTGTTACGTAATC 
                 GATTACGTAACAG 
               
               
                   
               
               
                 HSFY1_HSFY2_1_SELEX|HSFY2_1 
                 TTCGAAACGTTCGAA 
                 TTCGAACGTTTCGAA 
               
               
                   
               
               
                 SOX15_SOX15_1_SELEX|SOX1_Sox1_1_SELEX|SRY_SRY_1_ 
                 AACAATAACATTGTT 
                 AACAATGTTATTGTT 
               
               
                 SELEX|SOX15_2|SRY_5|SOX1_2 
                   
                   
               
               
                   
               
               
                 NKX3-1_Nkx3-1_2923_PBM 
                 AGCCACTTAA 
                 TTAAGTGGCT 
               
               
                   
               
               
                 ZBTB4_ZBTB4_si_HocoMoco 
                 CCCACCTGCCATCTAGG 
                 CCTAGATGGCAGGTGG 
               
               
                   
                   
                 G 
               
               
                   
               
               
                 ZBTB6_V$Z1D_01_Transfac|ZBTB6_1 
                 CGGCTCTATCATC 
                 GATGATAGAGCCG 
               
               
                   
               
               
                 POU3F3_POU3F3_3_SELEX 
                 ATGAATATTCAT 
                 ATGAATATTCAT 
               
               
                   
               
               
                 GLI1_GL12_1_SELEX|GL12_1 
                 CGTCGTGGGTGGTC 
                 GACCACCCACGACG 
               
               
                   
               
               
                 NR3C1_known6 
                 CGCACAAGAACACAATG 
                 CGGGAGGGTACATTGT 
               
               
                   
                 TACCCTCCCG 
                 GTTCTTGTGCG 
               
               
                   
               
               
                 NKX2-3_1 
                 CATTAAGTACTTAAAG 
                 CTTTAAGTACTTAATG 
               
               
                   
               
               
                 NOBOX_pTH6448_PBM 
                 CTTAATTGGC 
                 GCCAATTAAG 
               
               
                   
               
               
                 AP1_disc4 
                 AGTCATACTGAAA 
                 TTTCAGTATGACT 
               
               
                   
               
               
                 POU3F3_4 
                 ATGAATATTCAA 
                 TTGAATATTCAT 
               
               
                   
               
               
                 ELF1_Eip74EF_SANGER_5_FBgn0000567_B1H|ELF3_Elf3_3 
                 ACCCGGAAGT 
                 ACTTCCGGGT 
               
               
                 876_PBM|ELF3_Elf5_PBM|ELF3_Ehf_3056_PBM|ELF1_Mv 
                   
                   
               
               
                 63_ChIP-seq|ELF3_Ehf_PBM|ELF1_disc1 
                   
                   
               
               
                   
               
               
                 NFE2L2_2 
                 CATGACTCAGCAG 
                 CTGCTGAGTCATG 
               
               
                   
               
               
                 RORB_Hr46_FlyReg_FBgn0000448_B1H 
                 AATTGGGTCA 
                 TGACCCAATT 
               
               
                   
               
               
                 NR1H_3 
                 GGGGTCAGTAGAGGTC 
                 TGACCTCTACTGACCCC 
               
               
                   
                 A 
                   
               
               
                   
               
               
                 SOX18_Sox18_3506_PBM|SOX9_Sox8_1733_PBM|SOX1_S 
                 AAAACAAT 
                 ATTGTTTT 
               
               
                 ox14_2677_PBM|SOX3_pTH3087_PBM|SOX7_Sox7_3460 
                   
                   
               
               
                 PBM 
                   
                   
               
               
                   
               
               
                 STAT_known7 
                 CATTTCCG 
                 CGGAAATG 
               
               
                   
               
               
                 IRX3_MA0233.1_B1H 
                 AAACA 
                 TGTTT 
               
               
                   
               
               
                 PAX5_disc1 
                 GGGGGCAGCCAAGCGT 
                 GTCACGCTTGGCTGCCC 
               
               
                   
                 GAC 
                 CC 
               
               
                   
               
               
                 FOXD1_FOXA3_f1_HocoMoco 
                 GCAAAGCAAACAA 
                 TTGTTTGCTTTGC 
               
               
                 HNF4G_Hnf4a_1_SELEX|HNF4G_HNF4A_5_SELEX|HNF4_k 
                 ATTGGACTTTGACCCC 
                 GGGGTCAAAGTCCAAT 
               
               
                   
               
               
                 nown20|HNF4_known22 
                   
                   
               
               
                 ZNF263_pTH2682_PBM 
                 GGGAGCAC 
                 GTGCTCCC 
               
               
                   
               
               
                 HES7_HE57_1_SELEX|HES7_1 
                 TGGCACGTGCCA 
                 TGGCACGTGCCA 
               
               
                   
               
               
                 RARG_Rarb_3_SELEX|RARG_RARA_6_SELEX|RARA_7|RAR 
                 AGGTCAACTAAAGGTCA 
                 TGACCTTTAGTTGACCT 
               
               
                 B_3 
                   
                   
               
               
                   
               
               
                 VENTX_VENTX_2_SELEX|VENTX_2 
                 CGCTAATCGGAAAACGA 
                 CTAATCGTTTTCCGATTA 
               
               
                   
                 TTAG 
                 GCG 
               
               
                   
               
               
                 GTF2I_1 
                 AGAGGGAGG 
                 CCTCCCTCT 
               
               
                   
               
               
                 TCF4_da_SANGER_10_FBgn0000413_B1H 
                 CGCAGGTGTGC 
                 GCACACCTGCG 
               
               
                   
               
               
                 SOX1_Sox21_3417_PBM|SOX9_pTH1729_PBM 
                 ATTGTTTTC 
                 GAAAACAAT 
               
               
                   
               
               
                 E2F3_E2F3_3752_PBM 
                 ATTGGCGCGC 
                 GCGCGCCAAT 
               
               
                   
               
               
                 IRF_known11 
                 CAGTTTCGGTTCTC 
                 GAGAACCGAAACTG 
               
               
                   
               
               
                 HOXD12_1 
                 AAGATTTTACGACCTTG 
                 CAAGGTCGTAAAATCTT 
               
               
                   
               
               
                 GLI1_GLI2_2_SELEX|GL12_2 
                 CAGTGTGGTCGC 
                 GCGACCACACTG 
               
               
                   
               
               
                 NKX2-5_Bapx1_2343_PBM|NKX2-5_pTH6327_PBM|NKX2- 
                 ACCACTTAA 
                 TTAAGTGGT 
               
               
                 5_Nkx2-3_3435_PBM|NKX3-1_5|NKX3-2_3|NKX3-1_6 
                   
                   
               
               
                   
               
               
                 HMX1_1 
                 ACAAGCAATTAATGAAT 
                 ATTCATTAATTGCTTGT 
               
               
                   
               
               
                 THRB_THB_do_HocoMoco 
                 GAGGTCAGGTCAGGTC 
                 TGACCTGACCTGACCTC 
               
               
                   
                 A 
                   
               
               
                   
               
               
                 HIC1_3 
                 ACTATGCCAACCTACC 
                 GGTAGGTTGGCATAGT 
               
               
                   
               
               
                 PITX2_PITX2_si_HocoMoco 
                 TGGGATTAAA 
                 TTTAATCCCA 
               
               
                   
               
               
                 JUN_HeLa-S3_JUND_Stanford_ChIP-seq 
                 AAGAATGAGTCATCA 
                 TGATGACTCATTCTT 
               
               
                   
               
               
                 HMX1_VSHMX1_01_Transfac|HMX3_1 
                 CAAGTGCGTG 
                 CACGCACTTG 
               
               
                   
               
               
                 PRDM16_EVI1_f1_HocoMoco 
                 AAGATAAGATAAGATA 
                 TATCTTATCTTATCTT 
               
               
                   
               
               
                 HOXB2_HXB1_f1_HocoMoco 
                 CCATCCATCA 
                 TGATGGATGG 
               
               
                   
               
               
                 E2F4_HeLa-S3_E2F4_UCD_ChIP-seq 
                 GGCGGGAAATTTGAA 
                 TTCAAATTTCCCGCC 
               
               
                   
               
               
                 AP1_known1 
                 ACTGAGTCACC 
                 GGTGACTCAGT 
               
               
                   
               
               
                 IKZF1_V$IK1_01_Transfac|IKZF1_1 
                 ACTTGGGAATACC 
                 GGTATTCCCAAGT 
               
               
                   
               
               
                 RARG_RARG_1_SELEX|RARG_1 
                 GAGGTCAAAAGGTCAC 
                 TGTGACCTTTTGACCTC 
               
               
                   
                 A 
                   
               
               
                   
               
               
                 PAX9_GM12878_PAX5C20_HudsonAlpha_ChIP- 
                 GCAGCCAAGCGTGAC 
                 GTCACGCTTGGCTGC 
               
               
                 seq|PAX9_GM12892_PAX5C20_HudsonAlpha_ChIP- 
                   
                   
               
               
                 seq|PAX9_GM12878_PAX5N19_HudsonAlpha_ChIP- 
                   
                   
               
               
                 seq|PAX9_Mv108_ChIP-seq 
                   
                   
               
               
                   
               
               
                 GSC_Gsc_2327_PBM 
                 GCTAATCCC 
                 GGGATTAGC 
               
               
                   
               
               
                 HOXC6_pTH6164_PBM 
                 AATAATTATA 
                 TATAATTATT 
               
               
                   
               
               
                 REST_disc4 
                 GCACCAGGGACAGC 
                 GCTGTCCCTGGTGC 
               
               
                   
               
               
                 POU2F2_4 
                 TATGAATATTCAAA 
                 TTTGAATATTCATA 
               
               
                   
               
               
                 PKNOX2_MEIS2_do_HocoMoco 
                 TGACAGCTGTCAA 
                 TTGACAGCTGTCA 
               
               
                   
               
               
                 HSFY1_HSFY2_2_SELEX|HSFY2_2 
                 CGTTCGAAA 
                 TTTCGAACG 
               
               
                   
               
               
                 NR2F2_V$ARP1_01_Transfac|NR2F2_1 
                 AGGGGTCAAGGGTTCA 
                 TGAACCCTTGACCCCT 
               
               
                   
               
               
                 CTCF_HUVEC_CTCF_UW_ChIP-seq 
                 CTCCGGCGCCCCCTGGT 
                 GCCACCAGGGGGCGCC 
               
               
                   
                 GGC 
                 GGAG 
               
               
                   
               
               
                 POU2F2_known9 
                 AATTAGCATAGA 
                 TCTATGCTAATT 
               
               
                   
               
               
                 CTCF_HepG2_CTCF_UT-A_ChIP-seq 
                 AGTGCCACCTAGTGG 
                 CCACTAGGTGGCACT 
               
               
                   
               
               
                 CTCF_GM06990_CTCF_UW_ChIP-seq 
                 CTCGGGCGCCCCCTGGT 
                 GGCCACCAGGGGGCGC 
               
               
                   
                 GGCC 
                 CCGAG 
               
               
                   
               
               
                 PITX2_pTH5644_PBM 
                 AGGGATTAA 
                 TTAATCCCT 
               
               
                   
               
               
                 RXRA_known1 
                 CGGGTGACCTTTGACCC 
                 TCAGGGGTCAAAGGTC 
               
               
                   
                 CTGA 
                 ACCCG 
               
               
                   
               
               
                 HOXD12_pTH6533_PBM|CDX2_pTH6515_PBM|CDX2_pTH 
                 GTAATTAA 
                 TTAATTAC 
               
               
                 5553_PBM|HOXC5_Hoxc6_3954_PBM|NKX6-1_4|N KX6- 
                   
                   
               
               
                 1_5|NKX6-1_6 
                   
                   
               
               
                   
               
               
                 NR1l2_NR1l2_U_HocoMoco 
                 CTGAACTTTTTTGACCTC 
                 TGAGGTCAAAAAAGTTC 
               
               
                   
                 A 
                 AG 
               
               
                   
               
               
                 MEOX2_Meox2_1_SELEX|MEOX2_4 
                 GTAATTAC 
                 GTAATTAC 
               
               
                   
               
               
                 TEF_TEF_1_SELEX|TEF_Dbp_1_SELEX|TEF_DBP_2_SELEX| 
                 TATTACGTAACA 
                 TGTTACGTAATA 
               
               
                 DBP_3|DBP_4|TEF_2 
                   
                   
               
               
                   
               
               
                 IRF2_MA0051.1_SELEX|IRF_known10 
                 GGAAAGCGAAACCAAA 
                 GTTTTGGTTTCGCTTTCC 
               
               
                   
                 AC 
                   
               
               
                   
               
               
                 NEUROG1_NEUROG2_2_SELEX|NEUROG1_NEUROG2_1_S 
                 AACATATGTC 
                 GACATATGTT 
               
               
                 ELEX|NEUROG2_1|NEUROG2_2 
                   
                   
               
               
                   
               
               
                 AR_MA0113.2_ChIP-seq|NR3C1_disc1 
                 AGAACAGAATGTTCT 
                 AGAACATTCTGTTCT 
               
               
                   
               
               
                 GBX2_1 
                 AATCGCTAATTAGCGCT 
                 AGCGCTAATTAGCGATT 
               
               
                   
               
               
                 E2F3_pTH9221_PBM 
                 TACGCGCGTA 
                 TACGCGCGTA 
               
               
                   
               
               
                 ATOH7_Atoh1_1_SELEX|OLIG2_OLIG1_1_SELEX|ATOH1_1 
                 AACATATGTT 
                 AACATATGTT 
               
               
                 |OLIG1_1 
                   
                   
               
               
                   
               
               
                 ARNT2_V$ARNT_01_Transfac|ARNT_1 
                 GCGGGCACGTGACAAC 
                 GTTGTCACGTGCCCGC 
               
               
                   
               
               
                 ETS1_ETS1_2_SELEX|ETS_known15 
                 ACCGGAAGTACATCCGG 
                 ACCGGATGTACTTCCGG 
               
               
                   
                 T 
                 T 
               
               
                   
               
               
                 DM BX1_Gsc_Cell_FBgn0010323_B1H 
                 ATTAATCC 
                 GGATTAAT 
               
               
                   
               
               
                 CTCF_N HDF-Ad_CTCF_Broad_ChIP-seq 
                 GCCACCAGATGGCACTA 
                 TAGTGCCATCTGGTGGC 
               
               
                   
               
               
                 GATA_known10 
                 AGATAAAAGGGA 
                 TCCCTTTTATCT 
               
               
                   
               
               
                 LHX8_Lhx6_3432_PBM 
                 GCTGATTAC 
                 GTAATCAGC 
               
               
                   
               
               
                 MEF2_known7 
                 CGGTTTAAAAATAACC 
                 GGTTATTTTTAAACCG 
               
               
                   
               
               
                 ONECUT1_1 
                 AAAAATCAATAA 
                 TTATTGATTTTT 
               
               
                   
               
               
                 HOXB13_HXA13_f1_HocoMoco 
                 CCAATAAAACC 
                 GGTTTTATTGG 
               
               
                   
               
               
                 ETS1_ETS1_4_SELEX|ETS_known17 
                 ACCGGAAGTACATCCGG 
                 GCCGGATGTACTTCCGG 
               
               
                   
                 C 
                 T 
               
               
                   
               
               
                 SOX1_pTH2677_PBM 
                 CATTGTTA 
                 TAACAATG 
               
               
                   
               
               
                 SOX13_SOX13_f1_HocoMoco 
                 CATTGTTC 
                 GAACAATG 
               
               
                   
               
               
                 FOXD1_HCM1_2157_PBM 
                 GGTAAACAA 
                 TTGTTTACC 
               
               
                   
               
               
                 AHR::ARNT_3 
                 CACGCA 
                 TGCGTG 
               
               
                   
               
               
                 INSM1_INSM1_f1_HocoMoco 
                 TGCCCCCTGACA 
                 TGTCAGGGGGCA 
               
               
                   
               
               
                 NFKB_disc2 
                 GAAATCCCCAGC 
                 GCTGGGGATTTC 
               
               
                   
               
               
                 HNF1B_1 
                 GTTAAATATTAA 
                 TTAATATTTAAC 
               
               
                   
               
               
                 SOX9_V$SOX9_B1_Transfac|SOX9_1 
                 TAAGAACAATGGGA 
                 TCCCATTGTTCTTA 
               
               
                   
               
               
                 ZNF148_Zfp281_0973_PBM 
                 CCACCCCCCC 
                 GGGGGGGTGG 
               
               
                   
               
               
                 HOXA2_1|PDX1_4 
                 AAGGTAATTAGCTCAT 
                 ATGAGCTAATTACCTT 
               
               
                   
               
               
                 NKX2-5_NKX21_f1_HocoMoco 
                 AGCACTTGAG 
                 CTCAAGTGCT 
               
               
                   
               
               
                 SRF_GM12878_SRF_HudsonAlpha_ChIP-seq 
                 CCATGGCCAAATAAGGC 
                 TTGCCTTATTTGGCCATG 
               
               
                   
                 AA 
                 G 
               
               
                   
               
               
                 ZBTB7A_disc2 
                 AAGGGGCG 
                 CGCCCCTT 
               
               
                   
               
               
                 GCM1_GCM1_2_SELEX|GCM1_3 
                 ATGCGGGTACCCGCAT 
                 ATGCGGGTACCCGCAT 
               
               
                   
               
               
                 TAL1_known3 
                 GAGACCATCTGTTCCC 
                 GGGAACAGATGGTCTC 
               
               
                   
               
               
                 ZIC5_MA0456.1_B1H|ZIC5_opa_NAR_FBgn0003002_B1H 
                 CAGCGGGGGGTC 
                 GACCCCCCGCTG 
               
               
                   
               
               
                 ELF3_ELF3_2_SELEX|ELF3_3 
                 AACCCGGAAGTAA 
                 TTACTTCCGGGTT 
               
               
                   
               
               
                 ZBTB49_ZBTB49_1_SELEX|ZBTB49_1 
                 TGACGTGCCAGGCGAA 
                 TTTCGCCTGGCACGTCA 
               
               
                   
                 A 
                   
               
               
                   
               
               
                 TEF_MA0043.1_SELEX|HLF_2 
                 GGTTACGCAATA 
                 TATTGCGTAACC 
               
               
                   
               
               
                 FOXD1_V$HFH1_01_Transfac|FOXD1_FOXQ1_f1_HocoMo 
                 AAATAAACAATA 
                 TATTGTTTATTT 
               
               
                 co|FOXQ1_1 
                   
                   
               
               
                   
               
               
                 TEF_pTH3831_PBM|TEF_pTH5078_PBM|NFIL3_pTH5082_ 
                 TATTACGTAA 
                 TTACGTAATA 
               
               
                 PBM 
                   
                   
               
               
                   
               
               
                 STAT1_MA0137.3_ChIP-seq 
                 TTTCCAGGAAA 
                 TTTCCTGGAAA 
               
               
                   
               
               
                 NFE2L1_V$TCF11_01_Transfac 
                 CGGCCAAAATGAC 
                 GTCATTTTGGCCG 
               
               
                   
               
               
                 RFX8_RFX2_f1_HocoMoco 
                 TGTTGCTAGGGAA 
                 TTCCCTAGCAACA 
               
               
                   
               
               
                 TCF4_ato_da_SANGER_10_FBgn0000413_B1H|ATOH7_ato 
                 CCACCTGTCAC 
                 GTGACAGGTGG 
               
               
                 _da_SANGER_10_FBgn0010433_B1H 
                   
                   
               
               
                   
               
               
                 KLF14_pTH2353_PBM 
                 ACCGTTAT 
                 ATAACGGT 
               
               
                   
               
               
                 AP1_known4 
                 ACTTAGTCACT 
                 AGTGACTAAGT 
               
               
                   
               
               
                 ETV5_FLI1_f1_HocoMoco 
                 GCCACAGGAAGTGAGG 
                 TCCTCACTTCCTGTGGC 
               
               
                   
                 A 
                   
               
               
                   
               
               
                 CEBPA_V$CEBPA_01_Transfac|CEBPA_1 
                 ATATTGCAAAATCA 
                 TGATTTTGCAATAT 
               
               
                   
               
               
                 PPARA_PPARG_f1_HocoMoco 
                 AAGTAGGTCAAAGGTC 
                 GTGACCTTTGACCTACTT 
               
               
                   
                 AC 
                   
               
               
                   
               
               
                 MEF2_known8 
                 AGGGTTATTTTTAGAG 
                 CTCTAAAAATAACCCT 
               
               
                   
               
               
                 MTF1_2 
                 GGGCCGTGTGCAAAAA 
                 TTTTTGCACACGGCCC 
               
               
                   
               
               
                 SIX5_known3 
                 AAAAGTGATACCCCATT 
                 AATGGGGTATCACTTTT 
               
               
                   
               
               
                 NKX3-2_2 
                 CATAACCACTTAACAAC 
                 GTTGTTAAGTGGTTATG 
               
               
                   
               
               
                 E2F1_E2F1_1_SELEX|E2F_known27 
                 ATTGGCGCCAAA 
                 TTTGGCGCCAAT 
               
               
                   
               
               
                 POU3F3_V$POU3F2_02_Transfac|POU3F2_3 
                 ATTAACATAA 
                 TTATGTTAAT 
               
               
                   
               
               
                 AL662830.5_exd_FlyReg_FBgn0000611_B1H 
                 TAAAACAAAA 
                 TTTTGTTTTA 
               
               
                   
               
               
                 DUX4_MA0468.1_ChIP-seq 
                 TAATTTAATCA 
                 TGATTAAATTA 
               
               
                   
               
               
                 FOXD1_FOX13_2_SELEX|FOXD1_Foxj3_2_SELEX|FOXD1_F 
                 GTAAACAATAAACA 
                 TGTTTATTGTTTAC 
               
               
                 OXJ2_1_SELEX|FOXJ2_3|FOXJ3_3|FOXJ3_6 
                   
                   
               
               
                   
               
               
                 HNF1B_2 
                 ACGGCTAGTTAACAGCT 
                 AGCTGTTAACTAGCCGT 
               
               
                   
               
               
                 TCF12_disc4 
                 AACCGAAA 
                 TTTCGGTT 
               
               
                   
               
               
                 ARID3C_pTH9384_PBM|ARID3C_pTH5169_PBM|ARID3C_ 
                 TAATTAAAA 
                 TTTTAATTA 
               
               
                 pTH9214_PBM|ARID3B_pTH5117_PBM 
                   
                   
               
               
                   
               
               
                 ESX1_1 
                 ATCCATTAATTAATTGA 
                 TCAATTAATTAATGGAT 
               
               
                   
               
               
                 SPDEF_SPDEF_1_SELEX|SPDEF_SPDEF_4_SELEX|SPDEF_2| 
                 ACCCGGATGTA 
                 TACATCCGGGT 
               
               
                 SPDEF_5 
                   
                   
               
               
                   
               
               
                 TBX5_1 
                 AAAGGTGTCAAA 
                 TTTGACACCTTT 
               
               
                   
               
               
                 CEBPA_CEBPB_f1_HocoMoco 
                 ATTGCACAAC 
                 GTTGTGCAAT 
               
               
                   
               
               
                 MAX_V$MAX_01_Transfac|MYC_known2 
                 AAACCACGTGGTTT 
                 AAACCACGTGGTTT 
               
               
                   
               
               
                 POU1F1_3 
                 GACTTAATTAATTAATC 
                 GATTAATTAATTAAGTC 
               
               
                   
               
               
                 CTCF_GM12878_CTCF_UT-A_ChIP- 
                 CACCAGGGGGCG 
                 CGCCCCCTGGTG 
               
               
                 seq|CTCF_HRPEpiC_CTCF_UW_ChIP-seq 
                   
                   
               
               
                   
               
               
                 CEBPA_CEBPA_do_HocoMoco 
                 ATTGCACAAT 
                 ATTGTGCAAT 
               
               
                   
               
               
                 STAT5B_V$STAT5A_01_Transfac|STAT_known4 
                 GAATTCCAGGAAATA 
                 TATTTCCTGGAATTC 
               
               
                   
               
               
                 T_BRAC_si_HocoMoco 
                 ACATAGTGACACCTAGG 
                 ATTTCACACCTAGGTGT 
               
               
                   
                 TGTGAAAT 
                 CACTATGT 
               
               
                   
               
               
                 RARG_RARA_f2_HocoMoco 
                 AGGTCACCGAGAGGTC 
                 TGACCTCTCGGTGACCT 
               
               
                   
                 A 
                   
               
               
                   
               
               
                 ZSCAN10_pTH1292_PBM 
                 AGGAAGTGCAA 
                 TTGCACTTCCT 
               
               
                   
               
               
                 CEBPA_pTH5166_PBM 
                 ATTACGTAAT 
                 ATTACGTAAT 
               
               
                   
               
               
                 EGR1_disc5 
                 ACCGCCCA 
                 TGGGCGGT 
               
               
                   
               
               
                 RELA_SRP001843_p65_Input_ChIP-seq 
                 AGAGGAGAGGAGAAGA 
                 CTCTTCCTCCCTCCTCTT 
               
               
                   
                 GGAGGGAGGAAGAG 
                 CTCCTCTCCTCT 
               
               
                   
               
               
                 SIX5_disc1|ZNF143_disc2 
                 ACTACAATTC 
                 GAATTGTAGT 
               
               
                   
               
               
                 ZBTB33_known 1 
                 TTAGCAGGAA 
                 TTCCTGCTAA 
               
               
                   
               
               
                 BARX1_Barx1_2877_PBM|BARHL2_BARHL2_5_SELEX|BAR 
                 AGCAATTAGC 
                 GCTAATTGCT 
               
               
                 HL2_Barhl1_2_SELEX|BARHL2_6|BARHL1_3 
                   
                   
               
               
                   
               
               
                 SPZ1_2 
                 AGGGTAACAGC 
                 GCTGTTACCCT 
               
               
                   
               
               
                 OTX1_1 
                 ATAAATTAATCCCCTCC 
                 GGAGGGGATTAATTTAT 
               
               
                   
               
               
                 HMGA2_HMGA2_f1_HocoMoco 
                 AATAATCGCGAATAT 
                 ATATTCGCGATTATT 
               
               
                   
               
               
                 TFAP2A_MA0524.1_ChIP-seq 
                 CATGGCCCCAGGGCA 
                 TGCCCTGGGGCCATG 
               
               
                   
               
               
                 SP9_pTH4998_PBM 
                 GGGGGCGGA 
                 TCCGCCCCC 
               
               
                   
               
               
                 EN2_En2_1_SELEX|EMX2_EMX2_1_SELEX|HOXC5_HOXD8 
                 GCTAATTAGC 
                 GCTAATTAGC 
               
               
                 _1_SELEX|DMBX1_ALX3_1_SELEX|NOTO_NOTO_1_SELEX| 
                   
                   
               
               
                 EMX2_EMX1_1_SELEX|ALX3_2|EMX1_1|EMX2_2|EN2_4| 
                   
                   
               
               
                 HOXD8_2|NOTO_1 
                   
                   
               
               
                   
               
               
                 POU6F2_POU6F2_3_SELEX|POU6F2_3 
                 GCTAATTAGA 
                 TCTAATTAGC 
               
               
                   
               
               
                 ZNF143_disc4 
                 CCAGCGCCCGC 
                 GCGGGCGCTGG 
               
               
                   
               
               
                 POU3F3_POU3F1_2_SELEX|POU3F1_3 
                 ATGCATAATTTA 
                 TAAATTATGCAT 
               
               
                   
               
               
                 HOXA5_2 
                 AATTAGTG 
                 CACTAATT 
               
               
                   
               
               
                 PAX1_1 
                 ATATCTAGAGCGGAACG 
                 CCGTTCCGCTCTAGATA 
               
               
                   
                 G 
                 T 
               
               
                   
               
               
                 ATF3_disc2 
                 GGCGCGCGGCGGTGAC 
                 GTCACGTCACCGCCGCG 
               
               
                   
                 GTGAC 
                 CGCC 
               
               
                   
               
               
                 PAX4_V$PAX4_01_Transfac|PAX4_1 
                 GGCGGTCATGCGTGCG 
                 GGTCGCGCACGCATGAC 
               
               
                   
                 CGACC 
                 CGCC 
               
               
                   
               
               
                 AL662830.5_V$PBX1_01_Transfac|PBX1_1 
                 ATCAATCAA 
                 TTGATTGAT 
               
               
                   
               
               
                 LHX8_1 
                 ACCCCTAATTAGCGGTG 
                 CACCGCTAATTAGGGGT 
               
               
                   
               
               
                 RHOXF1_RHOXF1_2_SELEX|RHOXF1_4 
                 ATAATCCC 
                 GGGATTAT 
               
               
                   
               
               
                 E2F1_HeLa-53_E2F1_UCD_ChIP-seq 
                 CCGCGCGCCCTCCCC 
                 GGGGAGGGCGCGCGG 
               
               
                   
               
               
                 DLX1_DLX2_f1_HocoMoco 
                 ATAATTAT 
                 ATAATTAT 
               
               
                   
               
               
                 HIC1_4 
                 GTGCCAGCCTATGCCAA 
                 GTTGGCATAGGCTGGCA 
               
               
                   
                 C 
                 C 
               
               
                   
               
               
                 TBX1_TBX20_3_SELEX|TBX20_3 
                 CTTTCACACCTTTTC 
                 GAAAAGGTGTGAAAG 
               
               
                   
               
               
                 HSF2_HSF2_si_HocoMoco 
                 AGAATGTTCTAGAA 
                 TTCTAGAACATTCT 
               
               
                   
               
               
                 CTCF_disc1 
                 ACCACTAGATGGCACTA 
                 TGCAATAGTGCCATCTA 
               
               
                   
                 TTGCA 
                 GTGGT 
               
               
                   
               
               
                 HNF4_disc5 
                 ACAAAGGGC 
                 GCCCTTTGT 
               
               
                   
               
               
                 FOXD1_pTH9116_PBM 
                 ATGTAAACAAA 
                 TTTGTTTACAT 
               
               
                   
               
               
                 DLX1_DLX5_1_SELEX|DLX5_2 
                 ATAATTAC 
                 GTAATTAT 
               
               
                   
               
               
                 POU3F3_Oct- 
                 ATAATTAA 
                 TTAATTAT 
               
               
                 1_PBM|HOXC5_Dfd_FlyReg_FBgn0000439_B1H 
                   
                   
               
               
                   
               
               
                 VSX2_VSX1_1_SELEX|HOXA4_1|VSX1_2 
                 ATAATTAG 
                 CTAATTAT 
               
               
                   
               
               
                 DLX3_1 
                 GTCGGTAATTATCGCGA 
                 TCGCGATAATTACCGAC 
               
               
                   
               
               
                 PAX2_3 
                 AGTCACGC 
                 GCGTGACT 
               
               
                   
               
               
                 SOX1_SOX2_5_SELEX|SOX2_6 
                 TATCAATAACATTGATA 
                 TATCAATGTTATTGATA 
               
               
                   
               
               
                 SOX9_SOX8_4_SELEX|SOX8_5 
                 CATCAATTGCAGTGATC 
                 GATCACTGCAATTGATG 
               
               
                   
               
               
                 PAX2_MA0067.1_SELEX 
                 AGTCACGG 
                 CCGTGACT 
               
               
                   
               
               
                 ESRRA_known5 
                 TATTCAAGGTCATGCGA 
                 TCGCATGACCTTGAATA 
               
               
                   
               
               
                 NFATC1_NFATC1_2_SELEX|NFATC1_2 
                 TTTCCATAATGGAAA 
                 TTTCCATTATGGAAA 
               
               
                   
               
               
                 SMAD_1 
                 AGACACCAC 
                 GTGGTGTCT 
               
               
                   
               
               
                 FOXD1_FOXB1_3_SELEX|FOXD1_FOXC1_3_SELEX|FOXB1_ 
                 ATATTTACATA 
                 TATGTAAATAT 
               
               
                 3|FOXC1_5 
                   
                   
               
               
                   
               
               
                 SRF_V$SRF_C_Transfac|SRF_known3 
                 CTGGCCATATATGGC 
                 GCCATATATGGCCAG 
               
               
                   
               
               
                 TCF4_TCF4_1_SELEX|TCF4_1 
                 AGCAGGTGCG 
                 CGCACCTGCT 
               
               
                   
               
               
                 EGR1_disc6 
                 CCCCGGCCTCC 
                 GGAGGCCGGGG 
               
               
                   
               
               
                 RAD21_disc9 
                 ACTAGACGAGATG 
                 CATCTCGTCTAGT 
               
               
                   
               
               
                 SMAD1_SMAD1_si_HocoMoco 
                 AGCCTGTCTGCC 
                 GGCAGACAGGCT 
               
               
                   
               
               
                 IRF_known8 
                 CTTTCACTTTC 
                 GAAAGTGAAAG 
               
               
                   
               
               
                 GMEB1_1 
                 CCATCGTACGTACACTC 
                 GAGTGTACGTACGATG 
               
               
                   
                   
                 G 
               
               
                   
               
               
                 DMBX1_V$CART1_01_Transfac|ALX1_1 
                 AACTAATTACCATTATC 
                 CGATAATGGTAATTAGT 
               
               
                   
                 G 
                 T 
               
               
                   
               
               
                 CREB3L2_CrebA_SANGER_5_FBgn0004396_B1H 
                 GATTACGTGGCA 
                 TGCCACGTAATC 
               
               
                   
               
               
                 HOXA7_1 
                 AGATTGG 
                 CCAATCT 
               
               
                   
               
               
                 FOXD1_FOXF2_f1_HocoMoco 
                 AAAAGTAAACA 
                 TGTTTACTTTT 
               
               
                   
               
               
                 EOMES_TBX21_6_SELEX|TBX21_6 
                 TCACACCTAAAAGGTGT 
                 TCACACCTTTTAGGTGT 
               
               
                   
                 GA 
                 GA 
               
               
                   
               
               
                 ATF3_known9 
                 CGATGACGTCAGAG 
                 CTCTGACGTCATCG 
               
               
                   
               
               
                 IRX3_MA0210.1_B1H|IRX3_MA0217.1_B1H 
                 TAACA 
                 TGTTA 
               
               
                   
               
               
                 USF1_H1-hESC_USF1_HudsonAlpha_ChIP-seq 
                 CGCGGCCACGTGACC 
                 GGTCACGTGGCCGCG 
               
               
                   
               
               
                 FOXD1_MA0030.1_SELEX|FOXF2_2 
                 ATTGTTTACGTTTG 
                 CAAACGTAAACAAT 
               
               
                   
               
               
                 RHOXF1_1 
                 AAGACGCTGTAAAGCG 
                 TCGCTTTACAGCGTCTT 
               
               
                   
                 A 
                   
               
               
                   
               
               
                 GATA2_srp_FlyReg_FBgn0003507_B1H 
                 ATCAACCGATAG 
                 CTATCGGTTGAT 
               
               
                   
               
               
                 ATF7_pTH5081_PBM 
                 GATGACGTCA 
                 TGACGTCATC 
               
               
                   
               
               
                 MEF2_disc2 
                 AGGAAATGA 
                 TCATTTCCT 
               
               
                   
               
               
                 FOXP4_CG2052_SANGER_2.5_FBgn0039905_B1H 
                 AAAACCAAAAAAAT 
                 ATTTTTTTGGTTTT 
               
               
                   
               
               
                 TFCP2_1 
                 CTGGGTTGTGC 
                 GCACAACCCAG 
               
               
                   
               
               
                 SOX13_MA0087.1_SELEX|SOX5_2 
                 AAACAAT 
                 ATTGTTT 
               
               
                   
               
               
                 PITX2_Pitx3_3497_PBM|DRGX_Crx_3485_PBM|OTX2_Oc_ 
                 GGGATTAA 
                 TTAATCCC 
               
               
                 SOLEXA_FBgn0004102_B1H|RHOXF1_RHOXF1_4_SELEX|C 
                   
                   
               
               
                 RX_pTH10716_PBM|OTP_Otx2_3441_PBM|PITX2_Pitx2_2 
                   
                   
               
               
                 274_PBM|PITX2_PITX1_3_SELEX|DRGX_Otx1_2325_PBM| 
                   
                   
               
               
                 RHOXF1_6|PITX1_4 
                   
                   
               
               
                   
               
               
                 SHOX_MA0075.1_SELEX|PRRX2_2 
                 AATTA 
                 TAATT 
               
               
                   
               
               
                 ATF3_Jundm2_0911_PBM|ATF1_Atf1_3026_PBM|ATF3_p 
                 GATGACGTAA 
                 TTACGTCATC 
               
               
                 TH5464_PBM 
                   
                   
               
               
                   
               
               
                 ETV7_1 
                 CAGGAAGTAG 
                 CTACTTCCTG 
               
               
                   
               
               
                 RARG_RARG_6_SELEX|RARG_6 
                 AAGGTCAACAGAGGTC 
                 TGACCTCTGTTGACCTT 
               
               
                   
                 A 
                   
               
               
                   
               
               
                 EGR1_known3 
                 GTCGCCCCCAC 
                 GTGGGGGCGAC 
               
               
                   
               
               
                 CDX2_V$CDXA_01_Transfac 
                 ATTTATG 
                 CATAAAT 
               
               
                   
               
               
                 E2F1_V$E2F_01_Transfac|E2F_known1 
                 CAGTTTTCGCGCGTA 
                 TACGCGCGAAAACTG 
               
               
                   
               
               
                 RELA_GM15510_NFKB_Stanford_ChIP-seq 
                 AGGGGATTTCCAGG 
                 CCTGGAAATCCCCT 
               
               
                   
               
               
                 SRY_V$SRY_01_Transfac|SRY_1 
                 AAACAAA 
                 TTTGTTT 
               
               
                   
               
               
                 ESRRG_MA0141.2_ChIP-seq 
                 AGGTCAAGGTCA 
                 TGACCTTGACCT 
               
               
                   
               
               
                 HOXC5_HXA5_si_HocoMoco|HOXC5_HX67_si_HocoMoco 
                 CATTAATCAA 
                 TTGATTAATG 
               
               
                   
               
               
                 MAF_known1 
                 AGGCAACTTCCCTCTA 
                 TAGAGGGAAGTTGCCT 
               
               
                   
               
               
                 YY2_K562_YY1_HudsonAlpha_ChIP-seq 
                 ACCCAAGATGGCGGC 
                 GCCGCCATCTTGGGT 
               
               
                   
               
               
                 PPARA_PPARA_f1_HocoMoco|NR5A1_ftz- 
                 AAGGTCA 
                 TGACCTT 
               
               
                 f1_SANGER_5_FBgn0001078_B1H|NR2F2_svp_SANGER_5 
                   
                   
               
               
                 FBgn0003651_B1H 
                   
                   
               
               
                   
               
               
                 AP1_known6 
                 GAATGAGTCAGCA 
                 TGCTGACTCATTC 
               
               
                   
               
               
                 CDX2_MA0465.1_ChIP-seq 
                 AAGCCATAAAA 
                 TTTTATGGCTT 
               
               
                   
               
               
                 MAFB_MA0117.1_SELEX|MAF_known3 
                 GCGTCAGC 
                 GCTGACGC 
               
               
                   
               
               
                 NFE2L1::MAFG_2 
                 CATGAC 
                 GTCATG 
               
               
                   
               
               
                 HOXC5_Hoxa3_2783_PBM 
                 AGGTCATTAA 
                 TTAATGACCT 
               
               
                   
               
               
                 PPARA_PPARD_f1_HocoMoco 
                 TAGGACAAAGGTCA 
                 TGACCTTTGTCCTA 
               
               
                   
               
               
                 YY2_pho_SOLEXA_5_FBgn0002521_B1H 
                 ACCAAAATGGCGGCC 
                 GGCCGCCATTTTGGT 
               
               
                   
               
               
                 HNF4_known9 
                 GGGGCAAAGTTCAA 
                 TTGAACTTTGCCCC 
               
               
                   
               
               
                 ELF3_ELF3_1_SELEX|ELF3_EHF_1_SELEX|EHF_2|ELF3_2 
                 AACCCGGAAGTA 
                 TACTTCCGGGTT 
               
               
                   
               
               
                 ELF1_ELF1_1_SELEX|ELF1_ELF1_2_SELEX|ELF1_ELF4_1_SE 
                 AACCCGGAAGTG 
                 CACTTCCGGGTT 
               
               
                 LEX|ELF1_known2|ELF1_known3|ELF4_1 
                   
                   
               
               
                   
               
               
                 MYOD1_MYF6_f1_HocoMoco|TFCP2_2 
                 CAGCTGC 
                 GCAGCTG 
               
               
                   
               
               
                 SOX17_MA0078.1_SELEX|SOX17_2 
                 CTCATTGTC 
                 GACAATGAG 
               
               
                   
               
               
                 MAFK_K562_MAFK_Stanford_ChIP-seq 
                 AATTGCTGACTCAGC 
                 GCTGAGTCAGCAATT 
               
               
                   
               
               
                 ZNF740_1 
                 CAAGTGGGGGGGGGG 
                 CCCCCCCCCCCACTTG 
               
               
                   
                 G 
                   
               
               
                   
               
               
                 MAX_MAX_f1_HocoMoco 
                 ACCACGTGGCT 
                 AGCCACGTGGT 
               
               
                   
               
               
                 PKNOX2_Pknox2_1_SELEX|PKNOX2_Meis3_2_SELEX|PKN 
                 TGACACCTGTCA 
                 TGACAGGTGTCA 
               
               
                 OX2_Meis2_2_SELEX|PKNOX2_PKNOX1_1_SELEX|PKNOX2 
                   
                   
               
               
                 _PKNOX2_1_SELEX|MEIS1_MEIS3_2_SELEX|MEIS3_3|MEI 
                   
                   
               
               
                 S2_4|MEIS3_5|PKNOX1_2|PKNOX2_2|PKNOX2_3 
                   
                   
               
               
                   
               
               
                 E2F6_HeLa-S3_E2F6_UCD_ChIP- 
                 GGGGCGGGAAA 
                 TTTCCCGCCCC 
               
               
                 seq|E2F6_K562b_E2F6_UCD_ChIP-seq 
                   
                   
               
               
                   
               
               
                 NFKB_known6 
                 GGCGGGGAAATTCCCC 
                 GGGGAATTTCCCCGCC 
               
               
                   
               
               
                 RAX_1 
                 GTGCGCTAATTAGTGCA 
                 TGCACTAATTAGCGCAC 
               
               
                   
               
               
                 PAX2_V$PAX2_01_Transfac 
                 CCTCGTCACGCATGATG 
                 GCCATCATGCGTGACGA 
               
               
                   
                 GC 
                 GG 
               
               
                   
               
               
                 MYC_disc2 
                 ACCACGTGGCC 
                 GGCCACGTGGT 
               
               
                   
               
               
                 PAX2_1 
                 CCTCGTCACGCATGATG 
                 TCCATCATGCGTGACGA 
               
               
                   
                 GA 
                 GG 
               
               
                   
               
               
                 E2F2_E2F2_3_SELEX|E2F2_4 
                 AAAATGGCGCCATTTT 
                 AAAATGGCGCCATTTT 
               
               
                   
               
               
                 SOX9_Sox10_1_SELEX|SOX11_Sox11_1_SELEX|SOX10_8|S 
                 AACAATTTCAGTGTT 
                 AACACTGAAATTGTT 
               
               
                 OX11_2 
                   
                   
               
               
                   
               
               
                 GATA2_T-47D_GATA3_HudsonAlpha_ChIP-seq 
                 ACAGATTCTTATCTG 
                 CAGATAAGAATCTGT 
               
               
                   
               
               
                 PKNOX2_MEIS1_f2_HocoMoco 
                 CATAAAACTGTCA 
                 TGACAGTTTTATG 
               
               
                   
               
               
                 SIX6_Six6_2267_PBM 
                 GAATGATATCC 
                 GGATATCATTC 
               
               
                   
               
               
                 E2F3_pTH9288_PBM 
                 AGCGCGCGCG 
                 CGCGCGCGCT 
               
               
                   
               
               
                 ESRRA_known2 
                 AGATCAAGGTCATA 
                 TATGACCTTGATCT 
               
               
                   
               
               
                 TCF7L2_I$TCF_1_Transfac 
                 AAGATCAAAGG 
                 CCTTTGATCTT 
               
               
                   
               
               
                 JUN_pTH3064_PBM 
                 TGACTCAA 
                 TTGAGTCA 
               
               
                   
               
               
                 ESRRG_ECC-1_ERALPHA_HudsonAlpha_ChIP-seq 
                 AGGTCACCGTGACCT 
                 AGGTCACGGTGACCT 
               
               
                   
               
               
                 ID4_ID4_1_SELEX|ID4_1 
                 GACAGGTGTA 
                 TACACCTGTC 
               
               
                   
               
               
                 ZSCAN4_ZSCAN4_1_SELEX|ZSCAN4_3 
                 TGCACACACTGAAAA 
                 TTTTCAGTGTGTGCA 
               
               
                   
               
               
                 TFAP2_known10 
                 ATTGCCTGAGGCGAA 
                 TTCGCCTCAGGCAAT 
               
               
                   
               
               
                 ESR2_ESR2_do_HocoMoco 
                 AGGTCACCGTGACCC 
                 GGGTCACGGTGACCT 
               
               
                   
               
               
                 SIX2_Six1_0935_PBM|SIX6_pTH5928_PBM 
                 ATGATACCCC 
                 GGGGTATCAT 
               
               
                   
               
               
                 RARG_RARG_2_SELEX|RARG_2 
                 AAGGTCAACTAAAGGTC 
                 TGACCTTTAGTTGACCTT 
               
               
                   
                 A 
                   
               
               
                   
               
               
                 TBX1_TBX20_1_SELEX|TBX1_TBX20_5_SELEX|TBX20_1|TB 
                 AGGTGTGAAGGTGTGA 
                 TCACACCTTCACACCT 
               
               
                 X20_5 
                   
                   
               
               
                   
               
               
                 BARHL2_BARHL2_6_SELEX|BARHL2_7 
                 CAATTAGCACCAATTA 
                 TAATTGGTGCTAATTG 
               
               
                   
               
               
                 HNF4_known14 
                 AGGCCAAAGGTCA 
                 TGACCTTTGGCCT 
               
               
                   
               
               
                 NR1H4_1 
                 CAAGGTCATTAACC 
                 GGTTAATGACCTTG 
               
               
                   
               
               
                 NHLH2_HLH4C_da_SANGER_5_3_FBgn0011277_B1H|TCF4 
                 CACCTGCTCC 
                 GGAGCAGGTG 
               
               
                 HLH4C_da_SANGER_5_3_FBgn0000413_B1H 
                   
                   
               
               
                   
               
               
                 LMX1B_1 
                 AGTTTTTAATTAATTTG 
                 CAAATTAATTAAAAACT 
               
               
                   
               
               
                 TCF7L2_known1 
                 CCTTTGAA 
                 TTCAAAGG 
               
               
                   
               
               
                 HNF1A_2 
                 ACTTAGTTAACTAAAAA 
                 TTTTTAGTTAACTAAGT 
               
               
                   
               
               
                 E2F_disc1|HEY1_disc1 
                 GGTGACGTCA 
                 TGACGTCACC 
               
               
                   
               
               
                 FOXD1_Foxj3_0982_PBM|FOXD1_pTH6549_PBM 
                 TGTAAACAAA 
                 TTTGTTTACA 
               
               
                   
               
               
                 EGR3_EGR3_f1_HocoMoco 
                 ACACCCACTCT 
                 AGAGTGGGTGT 
               
               
                   
               
               
                 SP1_pTH5421_PBM 
                 CATGCAGC 
                 GCTGCATG 
               
               
                   
               
               
                 AL662830.5_PBX2_f1_HocoMoco 
                 CCATCAATCAATTTA 
                 TAAATTGATTGATGG 
               
               
                   
               
               
                 IRX3_Mirr_Cell_F Bgn0014343_B1H 
                 AAAAAACA 
                 TGTTTTTT 
               
               
                   
               
               
                 REST_disc6 
                 ACAGCGCT 
                 AGCGCTGT 
               
               
                   
               
               
                 EOMES_1 
                 AATTTTCACACCTTTTA 
                 TAAAAGGTGTGAAAATT 
               
               
                   
               
               
                 HF1H36_1 
                 GCCCCTCCCCCACC 
                 GGTGGGGGAGGGGC 
               
               
                   
               
               
                 NR1D2_NR1D1_f1_HocoMoco 
                 AAAAGTAGGTCAGA 
                 TCTGACCTACTTTT 
               
               
                   
               
               
                 BCL_disc8 
                 CCCCGCTGCCCGGC 
                 GCCGGGCAGCGGGG 
               
               
                   
               
               
                 S N3A_disc3 
                 ACCATGGACAG 
                 CTGTCCATGGT 
               
               
                   
               
               
                 EOMES_EOMES_2_SELEX|EOMES_3 
                 TCACACCTTAGAAGGTG 
                 TCACACCTTCTAAGGTG 
               
               
                   
                 TGA 
                 TGA 
               
               
                   
               
               
                 HDAC2_disc4 
                 CGCGCGCGCG 
                 CGCGCGCGCG 
               
               
                   
               
               
                 ARX_1 
                 GTCCATTAATTAATGGA 
                 TCCATTAATTAATGGAC 
               
               
                   
               
               
                 HOXC10_Hoxc9_2367_PBM|MNX1_MNX1_1_SELEX|MNX 
                 GGTAATTAAA 
                 TTTAATTACC 
               
               
                 1_2 
                   
                   
               
               
                   
               
               
                 LCOR_pTH8558_PBM 
                 AATTTTGGG 
                 CCCAAAATT 
               
               
                   
               
               
                 HOXB2_HOXA1_1_SELEX|HOXA1_2 
                 GGTAATTAAC 
                 GTTAATTACC 
               
               
                   
               
               
                 ZNF35_1 
                 AACAAACAACAAGAG 
                 CTCTTGTTGTTTGTT 
               
               
                   
               
               
                 CEBPG_CEBPG_2_SELEX|CEBPA_pTH5460_PBM|CEBPA_C 
                 ATTGCGCAAT 
                 ATTGCGCAAT 
               
               
                 EBPB_1_SELEX|CEBPA_CEBPB_2_SELEX|CEBPG_CEBPG_1_ 
                   
                   
               
               
                 SELEX|CEBPA_Cebpb_1_SELEX|CEBPA_CEBPE_1_SELEX|CE 
                   
                   
               
               
                 BPA_CEBPD_1_SELEX|CEBPB_disc1|CEBPB_known8|CEBP 
                   
                   
               
               
                 B_known9|CEBPD_2|CEBPE_1|CEBPG_2|CEBPG_3|CEBPB 
                   
                   
               
               
                 known 10 
                   
                   
               
               
                   
               
               
                 YY1_phol_SANGER_5_FBgn0035997_B1H|TATA_disc1 
                 CAAGATGGCG 
                 CGCCATCTTG 
               
               
                   
               
               
                 HOXD12_HOXC12_2_SELEX|HOXC12_3 
                 GGTCGTAAAAA 
                 TTTTTACGACC 
               
               
                   
               
               
                 STAT5B_V$STAT5A_02_Transfac|STAT_known6 
                 CTCTAGGAAACGCAATT 
                 TTCCCAGAATTGCGTTTC 
               
               
                   
                 CTGGGAA 
                 CTAGAG 
               
               
                   
               
               
                 TCF3_6 
                 ATCCACAGGTGCGAAAA 
                 TTTTCGCACCTGTGGAT 
               
               
                   
               
               
                 MEF2B_MEF2A_1_SELEX|MEF2_known12 
                 TCTAAAAATAGA 
                 TCTATTTTTAGA 
               
               
                   
               
               
                 BATF_BATF_si_HocoMoco 
                 ATGAGTCATA 
                 TATGACTCAT 
               
               
                   
               
               
                 DMBX1_MA0190.1_B1H|OTX2_MA0234.1_B1H 
                 GGATTA 
                 TAATCC 
               
               
                   
               
               
                 NPAS2_gce_Clk_SANGER_5_FBgn0023076_B1H|MYCN_M 
                 CACGTGGC 
                 GCCACGTG 
               
               
                 A0104.3_ChIP-seq 
                   
                   
               
               
                   
               
               
                 FOXD1_FOXF1_f1_HocoMoco 
                 AAAATAAACAT 
                 ATGTTTATTTT 
               
               
                   
               
               
                 EGR3_pTH2820_PBM 
                 CCGCCCACGC 
                 GCGTGGGCGG 
               
               
                   
               
               
                 GLI1_GLI3_si_HocoMoco|GLI1_GSE11062_Gli3_ChIP-seq 
                 CTGGGTGGTCC 
                 GGACCACCCAG 
               
               
                   
               
               
                 EP300_disc5 
                 AAAGAGGAAGTGAAA 
                 TTTCACTTCCTCTTT 
               
               
                   
               
               
                 IRX3_Irx3_1_SELEX|IRX3_3 
                 CTACATGACAAA 
                 TTTGTCATGTAG 
               
               
                   
               
               
                 AL662830.5_Pbx1_3203_PBM 
                 CCCATCAAA 
                 TTTGATGGG 
               
               
                   
               
               
                 HAND1_1 
                 AATGCCAGACGCCATT 
                 AATGGCGTCTGGCATT 
               
               
                   
               
               
                 E2F_known18 
                 GTTTGGCGCGAA 
                 TTCGCGCCAAAC 
               
               
                   
               
               
                 MXI1_disc1 
                 CCGTCGCCATGGCAAC 
                 GTTGCCATGGCGACGG 
               
               
                   
               
               
                 NR1H2_NR1H2_f1_HocoMoco 
                 CGTTGACCTTTGACCTTT 
                 TAAAGGTCAAAGGTCAA 
               
               
                   
                 A 
                 CG 
               
               
                   
               
               
                 SMAD2_SMAD3_1_SELEX|SMAD3_3 
                 CGTCTAGACA 
                 TGTCTAGACG 
               
               
                   
               
               
                 SP9_SP4_1_SELEX|SP4_2 
                 AAAGGGGGCGTGGCTT 
                 TAAGCCACGCCCCCTTT 
               
               
                   
                 A 
                   
               
               
                   
               
               
                 TAL1_known1 
                 CCGACCATCTGTTCAG 
                 CTGAACAGATGGTCGG 
               
               
                   
               
               
                 BARHL2_pTH6503_PBM 
                 AACCAATTAATAT 
                 ATATTAATTGGTT 
               
               
                   
               
               
                 GBX2_Unpg_SOLEXA_FBgn0015561_B1H|MEOX2_Btn_SO 
                 TAATTAA 
                 TTAATTA 
               
               
                 LEXA_FBgn0014949_B1H|SHOX_CG11294_SOLEXA_FBgn0 
                   
                   
               
               
                 030058_B1H|EN2_En_SOLEXA_FBgn0000577_B1H|VSX2_ 
                   
                   
               
               
                 MA0181.1_B1H|LHX1_Lim3_SOLEXA_FBgn0002023_B1H| 
                   
                   
               
               
                 SHOX_MA0172.1_B1H|HLX_Hlx1_2350_PBM|LBX2_Lbe_S 
                   
                   
               
               
                 OLEXA_FBgn0011278_B1H|HOXA4_MA0257.1_B1H|HOXC 
                   
                   
               
               
                 6_MA0230.1_B1H|LHX9_Ap_SOLEXA_FBgn0000099_B1H| 
                   
                   
               
               
                 RAX2_Repo_SOLEXA_FBgn0011701_B1H|SHOX_Otp_SOLE 
                   
                   
               
               
                 XA_FBgn0015524_B1H|EMX2_E5_SOLEXA_FBgn0008646_ 
                   
                   
               
               
                 B1H|HOXC5_MA0238.1_B1H|EN2_MA0220.1_B1H|SHOX_ 
                   
                   
               
               
                 Pph13_SOLEXA_FBgn0023489_B1H|ALX1_CG9876_SOLEX 
                   
                   
               
               
                 A_FBgn0034821_B1H|ALX1_AI_Cell_FBgn0000061_B1H|H 
                   
                   
               
               
                 OXA4_Zen2_SOLEXA_FBgn0004054_B1H|ALX1_MA0208.1 
                   
                   
               
               
                 _B1H|ALX1_MA0179.1_B1H|TLX3_MA0170.1_B1H|LHX1_ 
                   
                   
               
               
                 Lim1_SOLEXA_FBgn0026411_B1H|HOXC5_MA0206.1_B1H 
                   
                   
               
               
                 |SHOX_Hbn_Cell_F Bgn0008636_B1H|NKX1- 
                   
                   
               
               
                 1_MA0245.1_B1H|HOXC5_Pb_SOLEXA_FBgn0051481_B1H 
                   
                   
               
               
                 |HOXC5_Ftz_SOLEXA_FBgn0001077_B1H|HLX_MA0448.1_ 
                   
                   
               
               
                 B1H|ALX1_Rx_SOLEXA_FBgn0020617_B1H|RAX2_MA0240 
                   
                   
               
               
                 .1_B1H|NKX6- 
                   
                   
               
               
                 3_MA0191.1_B1H|LHX1_MA0195.1_B1H|SHOX_MA0457. 
                   
                   
               
               
                 1_B1H|ALX1_CG32532_Cell_FBgn0052532_B1H|VSX2_CG 
                   
                   
               
               
                 4136_Cell_FBgn0029775_B1H|HOXC6_Lab_Cell_FBgn0002 
                   
                   
               
               
                 522_B1H|LMX1A_Lmx1b_3433_PBM|VSX2_CG4136_SOLE 
                   
                   
               
               
                 XA_FBgn0029775_B1H|HOXC6_Lab_SOLEXA_FBgn000252 
                   
                   
               
               
                 2_B1H|EMX2_MA0189.1_B1H|NKX1- 
                   
                   
               
               
                 1_Slou_SOLEXA_FBgn0002941_B1H|LHX1_MA0194.1_B1H 
                   
                   
               
               
                 |ALX1_CG32532_SOLEXA_FBgn0052532_B1H|SHOX_CG11 
                   
                   
               
               
                 294_Cell_FBgn0030058_B1H|SHOX_MA0226.1_B1H|LHX1 
                   
                   
               
               
                 _Lim1_Cell_FBgn0026411_B1H|GBX2_MA0251.1_B1H|EM 
                   
                   
               
               
                 X2_Ems_SOLEXA_FBgn0000576_B1H|HLX_H2.0_Cell_FBgn 
                   
                   
               
               
                 0001170_B1H|SHOX_MA0236.1_B1H|LMX1A_MA0178.1_ 
                   
                   
               
               
                 B1H 
                   
                   
               
               
                   
               
               
                 BX088580.2_POU3F4_2_SELEX|POU3F4_3 
                 TAATTTATGCA 
                 TGCATAAATTA 
               
               
                   
               
               
                 ZNF263_disc1 
                 CCTCCTCCCC 
                 GGGGAGGAGG 
               
               
                   
               
               
                 HOXC10_Hoxd9_3_SELEX|HOXD9_3 
                 GTCGTAAAA 
                 TTTTACGAC 
               
               
                   
               
               
                 LM02_V$LMO2COM_01_Transfac 
                 CAGCACCTGGCG 
                 CGCCAGGTGCTG 
               
               
                   
               
               
                 BACH1_BACH1_si_HocoMoco 
                 ACCATGACTCAGCA 
                 TGCTGAGTCATGGT 
               
               
                   
               
               
                 NFE2_disc3 
                 CACGTGGCCC 
                 GGGCCACGTG 
               
               
                   
               
               
                 SP9_CG5669_SANGER_10_FBgn0039169_B1H 
                 AGGGGGCGGGGCCAA 
                 TTGGCCCCGCCCCCT 
               
               
                   
               
               
                 OTP_OTX2_2_SELEX|OTX2_3 
                 AGGATTAA 
                 TTAATCCT 
               
               
                   
               
               
                 DRGX_OTX1_f1_HocoMoco 
                 AGGATTAG 
                 CTAATCCT 
               
               
                   
               
               
                 MYC_known9 
                 CAAGTAACACGTGACAC 
                 CAAGTGTCACGTGTTAC 
               
               
                   
                 TTG 
                 TTG 
               
               
                   
               
               
                 IRF_disc4 
                 AGGGGGCGGGGCCAG 
                 CTGGCCCCGCCCCCT 
               
               
                   
               
               
                 ATF3_ATF3_f1_HocoMoco 
                 GTGACGCCA 
                 TGGCGTCAC 
               
               
                   
               
               
                 HES5_HES5_1_SELEX|HES5_1 
                 CGGCACGTGCCA 
                 TGGCACGTGCCG 
               
               
                   
               
               
                 HES5_HES5_2_SELEX 
                 CGGCACGTGCCG 
                 CGGCACGTGCCG 
               
               
                   
               
               
                 MYC_known5 
                 TACCACGTGTCA 
                 TGACACGTGGTA 
               
               
                   
               
               
                 BARHL2_1 
                 AAAAACCAATTAAGAA 
                 TTCTTAATTGGTTTTT 
               
               
                   
               
               
                 SOX17_1 
                 AACAAT 
                 ATTGTT 
               
               
                   
               
               
                 MEF2B_MEF2D_f1_HocoMoco 
                 GCTAAAAATAGC 
                 GCTATTTTTAGC 
               
               
                   
               
               
                 IRF5_IRF5_2_SELEX|IRF_known16 
                 AACCGAAACCA 
                 TGGTTTCGGTT 
               
               
                   
               
               
                 RFX5_disc2 
                 AGCCAATCAG 
                 CTGATTGGCT 
               
               
                   
               
               
                 CEBPA_V$CEBPB_02_Transfac|CEBPB_known2 
                 ATATTGCACAACTC 
                 GAGTTGTGCAATAT 
               
               
                   
               
               
                 TP53_4 
                 ACATGCCCGGGCATGTC 
                 CCGGACATGCCCGGGC 
               
               
                   
                 CGG 
                 ATGT 
               
               
                   
               
               
                 REST_H1-hESC_NRSF_HudsonAlpha_ChIP-seq 
                 AGCACCATGGACAGC 
                 GCTGTCCATGGTGCT 
               
               
                   
               
               
                 MYOD1_3 
                 CCGAAGCAGGTGGCGA 
                 CTTCGCCACCTGCTTCG 
               
               
                   
                 AG 
                 G 
               
               
                   
               
               
                 ZNF740_Zfp740_1_SELEX|ZNF740_ZNF740_1_SELEX|ZNF7 
                 CCCCCCCCAC 
                 GTGGGGGGGG 
               
               
                 40_ZNF740_2_SELEX|ZNF740_2|ZNF740_3|ZNF740_4 
                   
                   
               
               
                   
               
               
                 NOBOX_2 
                 CGCGCTAATTAGGTATC 
                 GATACCTAATTAGCGCG 
               
               
                   
               
               
                 ZBTB7C_ZBTB7A_1_SELEX|ZBTB7A_known3 
                 GGCGACCACCGA 
                 TCGGTGGTCGCC 
               
               
                   
               
               
                 MYBL1_MA0100.2_ChIP-seq 
                 CCAACTGCCA 
                 TGGCAGTTGG 
               
               
                   
               
               
                 GFI1_1 
                 AAAAAATAAATCACAGC 
                 GGCATATGCTGTGATTT 
               
               
                   
                 ATATGCC 
                 ATTTTTT 
               
               
                   
               
               
                 KLF7_1 
                 ATAGGGGCGGGGTCGA 
                 TCGACCCCGCCCCTAT 
               
               
                   
               
               
                 POU2F2_known10 
                 GATTTGCATA 
                 TATGCAAATC 
               
               
                   
               
               
                 MYOD1_1 
                 CAACAGGTGGTG 
                 CACCACCTGTTG 
               
               
                   
               
               
                 ALX1_PRRX1_f1_HocoMoco 
                 CAGATTA 
                 TAATCTG 
               
               
                   
               
               
                 CTCF_HMEC_CTCF_UW_ChIP-seq 
                 CCACCAGGGGGCGCCA 
                 CTGGCGCCCCCTGGTGG 
               
               
                   
                 G 
                   
               
               
                   
               
               
                 TCF7L2_Lef1_3504_PBM|TCF7L1_Tcf7l2_3461_PBM 
                 AGATCAAAGG 
                 CCTTTGATCT 
               
               
                   
               
               
                 ZBTB7C_K562_ZBTB7A_HudsonAlpha_ChIP-seq 
                 CCGAGACCCCTGCCC 
                 GGGCAGGGGTCTCGG 
               
               
                   
               
               
                 TBX5_3 
                 AAGGTGTGAG 
                 CTCACACCTT 
               
               
                   
               
               
                 TATA_known6 
                 TATTTATATATAAAGA 
                 TCTTTATATATAAATA 
               
               
                   
               
               
                 EOMES_TBX21_5_SELEX|TBX3_pTH3751_PBM|TBX1_pTH 
                 AAGGTGTGAA 
                 TTCACACCTT 
               
               
                 3777_PBM|EOMES_TBX21_2_SELEX|TBX21_2|TBX21_5 
                   
                   
               
               
                   
               
               
                 OLIG2_BHLHE22_1_SELEX|BHLHE22_1 
                 AAACATATGTTT 
                 AAACATATGTTT 
               
               
                   
               
               
                 HOXA11_1 
                 ATGTTTTACGACTTTA 
                 TAAAGTCGTAAAACAT 
               
               
                   
               
               
                 ETV5_ERG_2_SELEX|ETV5_FLI1_4_SELEX|ETV5_FLI1_2_SE 
                 ACCGGAAATCCGGT 
                 ACCGGATTTCCGGT 
               
               
                 LEX|ETV5_ERG_4_SELEX|ERG_2|ERG_4|FLI1_2|FLI1_4 
                   
                   
               
               
                   
               
               
                 ESRRG_Esrra_1_SELEX|ESRRA_known10 
                 TAGGTCAGTCAAGGTCA 
                 TGACCTTGACTGACCTA 
               
               
                   
               
               
                 FOXD1_Foxj3_1_SELEX|FOXJ3_5 
                 ACGGACACAAT 
                 ATTGTGTCCGT 
               
               
                   
               
               
                 IRF1_MA0050.2_ChIP-seq 
                 AAAGTGAAAGTGAAAG 
                 TTTTACTTTCACTTTCAC 
               
               
                   
                 TAAAA 
                 TTT 
               
               
                   
               
               
                 SOX1_1 
                 AATCAATTCAATAATT 
                 AATTATTGAATTGATT 
               
               
                   
               
               
                 CDC5L_CDC5L_si_HocoMoco 
                 ATTATGTTAAATCAC 
                 GTGATTTAACATAAT 
               
               
                   
               
               
                 SIX5_disc2|ZNF143_disc1 
                 GGGAATTGTA 
                 TACAATTCCC 
               
               
                   
               
               
                 GATA_known11 
                 AGATAAG 
                 CTTATCT 
               
               
                   
               
               
                 HNF4G_Mv81_ChIP-seq|HNF4G_MA0114.2_ChIP-seq 
                 CTGGACTTTGGACTC 
                 GAGTCCAAAGTCCAG 
               
               
                   
               
               
                 HOXC10_Hoxa10_2318_PBM|HOXC10_Hoxa11_2218_PB 
                 GGTCATAAA 
                 TTTATGACC 
               
               
                 M 
                   
                   
               
               
                   
               
               
                 DMRTC2_pTH9387_PBM 
                 AAATGTAA 
                 TTACATTT 
               
               
                   
               
               
                 FOXO6_FOXO1_1_SELEX|FOXP4_pTH5656_PBM|FOXD1_F 
                 GTAAACAA 
                 TTGTTTAC 
               
               
                 OXJ3_1_SELEX|FOXP4_pTH1288_PBM|FOXD1_Foxj3_3_SE 
                   
                   
               
               
                 LEX|FOXD1_Foxk1_2323_PBM|FOXD1_pTH5501_PBM|FO 
                   
                   
               
               
                 XD1_Foxa2_2830_PBM|FOXO6_FOXO3_2_SELEX|KIAA041 
                   
                   
               
               
                 5_FKH2_4517_PBM|FOXD1_pTH6638_PBM|FOXO6_pTH3 
                   
                   
               
               
                 749_PBM|FOXD1_pTH6729_PBM|FOXD1_pTH6734_PBM1 
                   
                   
               
               
                 FOXD1_s1p2_SANGER_5_FBgn0004567_B1H|FOXD1_FOXJ 
                   
                   
               
               
                 2_2_SELEX|FOXJ2_4|FOXJ3_2|FOXO1_3|FOXO3_5|FOXJ3 
                   
                   
               
               
                 7 
                   
                   
               
               
                   
               
               
                 LBX2_1 
                 TCGCATTAATTAATGCA 
                 TGCATTAATTAATGCGA 
               
               
                   
               
               
                 YY2_GM12878_YY1_HudsonAlpha_ChIP-seq 
                 CAAGATGGCGGCCGC 
                 GCGGCCGCCATCTTG 
               
               
                   
               
               
                 GATA2_V$GATA1_06_Transfac 
                 ATAGATAAGA 
                 TCTTATCTAT 
               
               
                   
               
               
                 MYC_known19 
                 CCCGACCACGTGGTCA 
                 TGACCACGTGGTCGGG 
               
               
                   
               
               
                 REST_V%NRSF_01_Transfac|REST_known1 
                 GGCGCTGTCCGTGGTGC 
                 TTCAGCACCACGGACAG 
               
               
                   
                 TGAA 
                 CGCC 
               
               
                   
               
               
                 SP9_Sp1_SANGER_5_FBgn0020378_B1H 
                 GCCACGCCCAC 
                 GTGGGCGTGGC 
               
               
                   
               
               
                 NR3C1_disc4 
                 AACCAAGATGGCGGC 
                 GCCGCCATCTTGGTT 
               
               
                   
               
               
                 EGR1_known6 
                 CAGATGCCGCCCACGCA 
                 GAATAATGCGTGGGCG 
               
               
                   
                 TTATTC 
                 GCATCTG 
               
               
                   
               
               
                 PKNOX2_V$ME1S1_01_Transfac|MEIS1_1 
                 CAGTGACAGGTC 
                 GACCTGTCACTG 
               
               
                   
               
               
                 ZNF524_ZNF524_2_SELEX|ZNF524_2 
                 CTCGAACCCGTGCC 
                 GGCACGGGTTCGAG 
               
               
                   
               
               
                 SMAD4_Med_FlyReg_FBgn0011655_B1H 
                 ATTGCCCGCCGC 
                 GCGGCGGGCAAT 
               
               
                   
               
               
                 E2F3_MA0469.1_ChIP-seq 
                 CTCCCGCCCCCACTC 
                 GAGTGGGGGCGGGAG 
               
               
                   
               
               
                 POU3F3_V$OCT1_07_Transfac 
                 AATTAGCATACA 
                 TGTATGCTAATT 
               
               
                   
               
               
                 IRF4_1 
                 CGTATCGAAACCAAA 
                 TTTGGTTTCGATACG 
               
               
                   
               
               
                 MYC_disc8 
                 ACCGCGTG 
                 CACGCGGT 
               
               
                   
               
               
                 CUX1_CUX1_2_SELEX|CUX1_9 
                 ATCGATAACCTGATCGA 
                 ATCGATCAGGTTATCGA 
               
               
                   
                 T 
                 T 
               
               
                   
               
               
                 ETS_known8 
                 CGGAAG 
                 CTTCCG 
               
               
                   
               
               
                 SOX13_Sox5_3459_PBM 
                 AGAACAAT 
                 ATTGTTCT 
               
               
                   
               
               
                 NR1D2_Eip75B_SANGER_5_FBgn0000568_B1H 
                 TATGTGGGTCA 
                 TGACCCACATA 
               
               
                   
               
               
                 KLF4_CG9895_SANGER_10_FBgn0034810_B1H 
                 AATGGGCGTGGC 
                 GCCACGCCCATT 
               
               
                   
               
               
                 HEY1_Hey_SANGER_5_FBgn0027788_B1H 
                 CAGCCGACACGTGCCCC 
                 GGGGCACGTGTCGGCT 
               
               
                   
                   
                 G 
               
               
                   
               
               
                 PKNOX2_Meis1_2335_PBM 
                 AGCTGTCAA 
                 TTGACAGCT 
               
               
                   
               
               
                 CTCF_HSMM_CTCF_Broad_ChIP-seq 
                 CCACCAGAGGGCGCTAT 
                 TATAGCGCCCTCTGGTG 
               
               
                   
                 A 
                 G 
               
               
                   
               
               
                 DMRT2_pTH9189_PBM 
                 TAATACATTA 
                 TAATGTATTA 
               
               
                   
               
               
                 MEIS1_3 
                 AAAGACCTGTCAATAC 
                 GTATTGACAGGTCTTT 
               
               
                   
               
               
                 TGIF1_2 
                 ACGCAGCTGTCAATATC 
                 GATATTGACAGCTGCGT 
               
               
                   
               
               
                 HSF2_1 
                 AGAATATTCG 
                 CGAATATTCT 
               
               
                   
               
               
                 HNF4G_MA0484.1_ChIP-seq 
                 AGAGTCCAAAGTCCA 
                 TGGACTTTGGACTCT 
               
               
                   
               
               
                 FOXA_known7 
                 AAAAAGTAAACAAAGA 
                 GTCTTTGTTTACTTTTT 
               
               
                   
                 C 
                   
               
               
                   
               
               
                 NR2C2_MA0504.1_ChIP-seq 
                 AGGGGTCAGAGGTCA 
                 TGACCTCTGACCCCT 
               
               
                   
               
               
                 AR_PRGR_do_HocoMoco 
                 AGAACAGTCTGTA 
                 TACAGACTGTTCT 
               
               
                   
               
               
                 AIRE_AIRE_f2_HocoMoco 
                 ATTGGTTATATTGGTTA 
                 TTAACCAATATAACCAA 
               
               
                   
                 A 
                 T 
               
               
                   
               
               
                 DLX1_1 
                 ATTAATTACCTCAG 
                 CTGAGGTAATTAAT 
               
               
                   
               
               
                 PAX5_known4 
                 AGAGCACTGAAGCGTA 
                 CGGTTACGCTTCAGTGC 
               
               
                   
                 ACCG 
                 TCT 
               
               
                   
               
               
                 PROP1_1 
                 CGAATTAATTAAGAAAC 
                 GTTTCTTAATTAATTCG 
               
               
                   
               
               
                 SOX14_1 
                 GATAATTATAATTAGC 
                 GCTAATTATAATTATC 
               
               
                   
               
               
                 ETV5_Elk3_PBM|ETV5_Elk4_PBM|ELF1_Elf2_PBM|ETV5_F 
                 AACCGGAAGT 
                 ACTTCCGGTT 
               
               
                 Ii1_PBM|ENSG00000235187_Etv3_PBM|ETV5_Erg_PBM|E 
                   
                   
               
               
                 TV6_Etv6_PBM|ENSG00000235187_Gm4881_PBM|ETV5_ 
                   
                   
               
               
                 Elk1_PBM|ETV5_Gabpa_2829_PBM|ELF1_Elf4_PBM|ETV5 
                   
                   
               
               
                 _Ets1_PBM 
                   
                   
               
               
                   
               
               
                 DMRT1_1 
                 GCAACAATGTATCAA 
                 TTGATACATTGTTGC 
               
               
                   
               
               
                 ARNT2_dys_tgo_SANGER_5_FBgn0015014_B1H|NPAS4_d 
                 AAATCGTGACT 
                 AGTCACGATTT 
               
               
                 ys_tgo_SANGER_5_FBgn0039411_B1H 
                   
                   
               
               
                   
               
               
                 NFYA_NFYA_f1_HocoMoco|NFYB_NFYB_f1_HocoMoco 
                 CAGCCAATCAGAG 
                 CTCTGATTGGCTG 
               
               
                   
               
               
                 DMRTA2_1 
                 GACACTGTAACAAAA 
                 TTTTGTTACAGTGTC 
               
               
                   
               
               
                 FOXA_disc1|HDAC2_disc2 
                 TAAGTAAACA 
                 TGTTTACTTA 
               
               
                   
               
               
                 BBX_1 
                 CACTTCATTGAATTA 
                 TAATTCAATGAAGTG 
               
               
                   
               
               
                 HOXC6_1 
                 CAAATTAATTAATAAAA 
                 TTTTATTAATTAATTTG 
               
               
                   
               
               
                 ETS_disc4 
                 AACCGGAAGC 
                 GCTTCCGGTT 
               
               
                   
               
               
                 ALX1_PRRX1_2_SELEX|ALX1_ISX_2_SELEX|MSX1_Msx3_2_ 
                 CCAATTAA 
                 TTAATTGG 
               
               
                 SELEX|DMBX1_Alx4_1744_PBM|LHX9_LHX9_1_SELEX|RA 
                   
                   
               
               
                 X2_RAXL1_1_SELEX|SHOX_pTH5805_PBM|MSX1_MSX2_2 
                   
                   
               
               
                 _SELEX|DMBX1_Cart1_1275_PBM|BSX_BSX_1_SELEX|SHO 
                   
                   
               
               
                 X_Shox2_2641_PBM|MSX1_MSX1_2_SELEX|SHOX_PRRX2 
                   
                   
               
               
                 _1_SELEX|SHOX_SHOX2_1_SELEX|ALX1_Vsx1_1_SELEX|SH 
                   
                   
               
               
                 OX_pTH5666_PBM|BSX_2|ISX_3|LHX9_2|MSX1_4|MSX2_ 
                   
                   
               
               
                 4|MSX2_6|PRRX1_3|PRRX2_4|RAX2_1|SHOX2_2|VSX1_4 
                   
                   
               
               
                   
               
               
                 STAT_known8|STAT_known9 
                 TATTTCCA 
                 TGGAAATA 
               
               
                   
               
               
                 MYB_4 
                 CAACTGCCA 
                 TGGCAGTTG 
               
               
                   
               
               
                 CR936877.3_MA0016.1_SELEX 
                 CCGTGACCCC 
                 GGGGTCACGG 
               
               
                   
               
               
                 RAD21_disc6 
                 GCCACCCTCTGGTGGCC 
                 GGCCACCAGAGGGTGG 
               
               
                   
                   
                 C 
               
               
                   
               
               
                 ONECUT3_MA0235.1_B1H 
                 AAATCAA 
                 TTGATTT 
               
               
                   
               
               
                 NKX2-1_1 
                 ACACTTGAGT 
                 ACTCAAGTGT 
               
               
                   
               
               
                 POU2F2_known14 
                 ATGTATTAATTAAGTA 
                 TACTTAATTAATACAT 
               
               
                   
               
               
                 SCRT1_CG17181_SOLEXA_5_FBgn0035144_B1H 
                 AACCACCTGTTGACC 
                 GGTCAACAGGTGGTT 
               
               
                   
               
               
                 ENSG00000234254_V$TGIF_01_Transfac|TGIF1_1 
                 AGCTGTCAGAA 
                 TTCTGACAGCT 
               
               
                   
               
               
                 MITF_TFE3_f1_HocoMoco 
                 CCACATGACC 
                 GGTCATGTGG 
               
               
                   
               
               
                 AR_ECC-1_GR_HudsonAlpha_ChIP-seq 
                 AGGGAACAGAATGTTCT 
                 GCCCAGAACATTCTGTT 
               
               
                   
                 GGGC 
                 CCCT 
               
               
                   
               
               
                 TEF_1 
                 ATGTTAACATAA 
                 TTATGTTAACAT 
               
               
                   
               
               
                 HIC1_HIC2_1_SELEX|HIC2_1 
                 ATGCCCACC 
                 GGTGGGCAT 
               
               
                   
               
               
                 IRX5_1 
                 AATTTTACATGTATATA 
                 TATATACATGTAAAATT 
               
               
                   
               
               
                 ETV5_Gabpa_PBM1ETV5_ELK1_f1_HocoMoco|ETV5_Ets97 
                 ACCGGAAGT 
                 ACTTCCGGT 
               
               
                 D_SANGER_10_FBgn0004510_B1H|ETV5_Etv5_PBM|ELK4 
                   
                   
               
               
                 _1 
                   
                   
               
               
                   
               
               
                 HOXC10_Hoxd9_2_SELEX|HOXD9_2 
                 GCAATAAAAA 
                 TTTTTATTGC 
               
               
                   
               
               
                 SIX5_Six4_2860_PBM 
                 ATGATACCC 
                 GGGTATCAT 
               
               
                   
               
               
                 HOXC5_PDX1_1_SELEX|PDX1_5 
                 GTAATTAACGGTAATTA 
                 TTAATTACCGTTAATTAC 
               
               
                   
                 A 
                   
               
               
                   
               
               
                 MYC_disc9 
                 CGCCCACGTC 
                 GACGTGGGCG 
               
               
                   
               
               
                 MYOD1_MA0545.1_ChIP-seq 
                 GAACAGCTGTC 
                 GACAGCTGTTC 
               
               
                   
               
               
                 PITX2_Ptx1_Cell_FBgn0020912_B1H|DMBX1_Gsc_SOLEXA 
                 GGATTAA 
                 TTAATCC 
               
               
                 _FBgn0010323_B1H|PITX2_MA0201.1_B1H|OTX2_Oc_Cell 
                   
                   
               
               
                 FBgn0004102_B1H 
                   
                   
               
               
                   
               
               
                 FOXD1_pTH2673_PBM|FOXD1_pTH3796_PBM|FOXD1_pT 
                 TATGTAAACA 
                 TGTTTACATA 
               
               
                 H2808_PBM 
                   
                   
               
               
                   
               
               
                 GZF1_1 
                 TATAGACGCGCA 
                 TGCGCGTCTATA 
               
               
                   
               
               
                 NFY_known5 
                 CCTTAGCCAATCA 
                 TGATTGGCTAAGG 
               
               
                   
               
               
                 ZBTB14_3 
                 TCAGGCGCGCGCGCCA 
                 TGGCGCGCGCGCCTGA 
               
               
                   
               
               
                 HOXC10_HXA9_f1_HocoMoco 
                 TCATAAAACTGTCA 
                 TGACAGTTTTATGA 
               
               
                   
               
               
                 TCF7L2_TCF7_f1_HocoMoco 
                 AGAACAAAGCGC 
                 GCGCTTTGTTCT 
               
               
                   
               
               
                 CREB3L1_CREB3_1_SELEX 
                 CGGTGACGTCATCA 
                 TGATGACGTCACCG 
               
               
                   
               
               
                 DMRT1_pTH9446_PBM 
                 TGTATCAA 
                 TTGATACA 
               
               
                   
               
               
                 LBX2_Lbe_Cell_FBgn0011278_B1H 
                 GTTAACTA 
                 TAGTTAAC 
               
               
                   
               
               
                 POU2F2_known8 
                 CTCATTTGCATAC 
                 GTATGCAAATGAG 
               
               
                   
               
               
                 ZSCAN26_1 
                 TTATGTACTAATAA 
                 TTATTAGTACATAA 
               
               
                   
               
               
                 MTF1_Mtf1_2377_PBM 
                 CGTGCGCAA 
                 TTGCGCACG 
               
               
                   
               
               
                 POU3F3_POU3F3_2_SELEX|POU3F3_3 
                 ATGCATAAATTA 
                 TAATTTATGCAT 
               
               
                   
               
               
                 MZF1_MA0057.1_SELEX|MZF1_4 
                 GGAGGGGGAA 
                 TTCCCCCTCC 
               
               
                   
               
               
                 BHLHE40_MA0464.1_ChIP-seq 
                 CTCACGTGCAC 
                 GTGCACGTGAG 
               
               
                   
               
               
                 NHLH2_HEN1_si_HocoMoco 
                 AGGGACGCAGCTGCTCC 
                 TGGGGAGCAGCTGCGT 
               
               
                   
                 CCA 
                 CCCT 
               
               
                   
               
               
                 LHX8_Lhx6_2272_PBM 
                 CTAATCAA 
                 TTGATTAG 
               
               
                   
               
               
                 ARID3C_ARI3A_do_HocoMoco 
                 AATTAATCGAAATCAAA 
                 TTTAATTTGATTTCGATT 
               
               
                   
                 TTAAA 
                 AATT 
               
               
                   
               
               
                 JDP2_1 
                 ACGATGACGTCATCGG 
                 CCGATGACGTCATCGT 
               
               
                   
               
               
                 MAX_HeLa-S3_MAX_Stanford_ChIP- 
                 AGCACGTGGCC 
                 GGCCACGTGCT 
               
               
                 seq|MYC_NB4_CMYC_Stanford_ChIP-seq 
                   
                   
               
               
                   
               
               
                 TEAD2_1 
                 CCGCCGC 
                 GCGGCGG 
               
               
                   
               
               
                 YY2_YY2_2_SELEX|YY2_2 
                 AAAATGGCGGT 
                 ACCGCCATTTT 
               
               
                   
               
               
                 AHR_tgo_ss_SANGER_5_FBgn0003513_B1H|ARNT2_tgo_s 
                 GTCACGCA 
                 TGCGTGAC 
               
               
                 s_SANGER_5_FBgn0015014_B1H 
                   
                   
               
               
                   
               
               
                 LHX8_LHX6_3_SELEX|LHX6_5 
                 TGATTGCAATCA 
                 TGATTGCAATCA 
               
               
                   
               
               
                 EMX2_MA0219.1_B1H|HOXC5_MA0166.1_B1H|MEOX2_ 
                 TCATTAA 
                 TTAATGA 
               
               
                 MA0215.1_B1H|BSX_Bsh_SOLEXA_FBgn0000529_B1H|HO 
                   
                   
               
               
                 XC5_MA0203.1_B1H|HOXC5_MA0225.1_B1H|HOXC5_Scr 
                   
                   
               
               
                 SOLEXA_FBgn0003339_B1H|HOXC5_Hoxc5_2630_PBM| 
                   
                   
               
               
                 HOXC5_MA0186.1_B1H 
                   
                   
               
               
                   
               
               
                 TCF12_disc6 
                 ATTCCAGGC 
                 GCCTGGAAT 
               
               
                   
               
               
                 VDR_1 
                 GGGTCAAGGGGGTGA 
                 TCACCCCCTTGACCC 
               
               
                   
               
               
                 RAD21_disc5 
                 CGCTGCCCTCTGC 
                 GCAGAGGGCAGCG 
               
               
                   
               
               
                 TP73_GSE15704_TP73_rapamycin_ChIP- 
                 ACATGCCCAGACATG 
                 CATGTCTGGGCATGT 
               
               
                 seq|TP53_MA0106.2_ChIP-seq 
                   
                   
               
               
                   
               
               
                 YY1_known5 
                 AAAATGGCGGC 
                 GCCGCCATTTT 
               
               
                   
               
               
                 NFIA_NFIA_1_SELEX|NFIA_NFIX_LSELEX|NFIA_1|NFIX_1 
                 TTGGCACCGTGCCAA 
                 TTGGCACGGTGCCAA 
               
               
                   
               
               
                 MEF2B_V$RSRFC4_01_Transfac 
                 AAGCTATAAATAGAAT 
                 ATTCTATTTATAGCTT 
               
               
                   
               
               
                 NANOG_disc4 
                 TGCATATCAA 
                 TTGATATGCA 
               
               
                   
               
               
                 EVX2_eve_FlyReg_FBgn0000606_B1H 
                 AAATAATTAACG 
                 CGTTAATTATTT 
               
               
                   
               
               
                 HOXD8_1 
                 TAATTAATTAATGGCTA 
                 TAGCCATTAATTAATTA 
               
               
                   
               
               
                 GTF2A_1 
                 GGTCCTTTTATA 
                 TATAAAAGGACC 
               
               
                   
               
               
                 JUN_MA0492.1_ChIP-seq 
                 AAAGATGATGTCATC 
                 GATGACATCATCTTT 
               
               
                   
               
               
                 ETV5_H1-hESC_GABP_HudsonAlpha_ChIP-seq 
                 AACCGGAAGTG 
                 CACTTCCGGTT 
               
               
                   
               
               
                 GATA2_Mw145_ChIP-seq 
                 TCTTATCA 
                 TGATAAGA 
               
               
                   
               
               
                 ARNT2_ss_tgo_SANGER_10_FBgn0015014_B1H|AHR_ss_t 
                 CATTGCGTGAC 
                 GTCACGCAATG 
               
               
                 go_SANGER_10_FBgn0003513_B1H 
                   
                   
               
               
                   
               
               
                 NFE2L1:: MAFG_1 
                 CATAATTGCTGAGTCAT 
                 CTAAAATGACTCAGCAA 
               
               
                   
                 TTTAG 
                 TTATG 
               
               
                   
               
               
                 MEF2_known6 
                 CGGTTTAAAAATAACCC 
                 TGGGTTATTTTTAAACC 
               
               
                   
                 A 
                 G 
               
               
                   
               
               
                 ELF1_I$E74A_01_Transfac 
                 CCTCACTTCCGGGTTCG 
                 CGAACCCGGAAGTGAG 
               
               
                   
                   
                 G 
               
               
                   
               
               
                 NKX2-5_Titf1_1722_PBM 
                 CCACTTAA 
                 TTAAGTGG 
               
               
                   
               
               
                 EBF1_known3 
                 ACCCAAGGGA 
                 TCCCTTGGGT 
               
               
                   
               
               
                 POU3F3_V$OCT1_01_Transfac 
                 CCGAAATTTGCATATTG 
                 TTCAATATGCAAATTTC 
               
               
                   
                 AA 
                 GG 
               
               
                   
               
               
                 RARG_RARB_a_HocoMoco 
                 GAGGTCAGGGC 
                 GCCCTGACCTC 
               
               
                   
               
               
                 SP4_1 
                 GAGAAGGGGGCGGGAC 
                 GGTCCCGCCCCCTTCTC 
               
               
                   
                 C 
                   
               
               
                   
               
               
                 PPARA_2 
                 CCTGACCCCAATGACCC 
                 TCGGGTCATTGGGGTCA 
               
               
                   
                 GA 
                 GG 
               
               
                   
               
               
                 HOXB4_1 
                 CGCGTTAATTAATTACC 
                 GGTAATTAATTAACGCG 
               
               
                   
               
               
                 TCF4_TCF4_2_SELEX|TCF4_2 
                 CACACCTGCA 
                 TGCAGGTGTG 
               
               
                   
               
               
                 MYOD1_V$MYOD_Q6_Transfac 
                 AGCACCTGTC 
                 GACAGGTGCT 
               
               
                   
               
               
                 PHOX2B_1 
                 CCTATTAATTAATTCCG 
                 CGGAATTAATTAATAGG 
               
               
                   
               
               
                 MEIS1_2 
                 AAGGAGCTGTCAATAC 
                 GTATTGACAGCTCCTT 
               
               
                   
               
               
                 ETV5_ETV2_1_SELEX|ETV2_1 
                 AACCGGAAATA 
                 TATTTCCGGTT 
               
               
                   
               
               
                 FOXM 1_FOXM1_f1_HocoMoco 
                 AAAAACAAACAAC 
                 GTTGTTTGTTTTT 
               
               
                   
               
               
                 HNF4G_Mv82_ChIP-seq 
                 AGTCCA 
                 TGGACT 
               
               
                   
               
               
                 BHLHA15_pTH4582_PBM 
                 ACATATGG 
                 CCATATGT 
               
               
                   
               
               
                 EBF1_V$OLF1_01_Transfac|EBF1_known1 
                 ACAACCTCCCTGGGGAG 
                 CACAACTCCCCAGGGAG 
               
               
                   
                 TTGTG 
                 GTTGT 
               
               
                   
               
               
                 DMBX1_DMBX1_1_SELEX|DMBX1_2 
                 GCGGATTAAC 
                 GTTAATCCGC 
               
               
                   
               
               
                 LBX2_LBX2_2_SELEX|HESX1_HESX1_1_SELEX|NKX1- 
                 GCCAATTAGC 
                 GCTAATTGGC 
               
               
                 1_Nkx1-1_3856_PBM|HESX1_1|LBX2_3 
                   
                   
               
               
                   
               
               
                 REST_disc9 
                 GCACCTCGCACAGC 
                 GCTGTGCGAGGTGC 
               
               
                   
               
               
                 YY2_YY1_1_SELEX|YY1_known7 
                 ATAATGGCGGC 
                 GCCGCCATTAT 
               
               
                   
               
               
                 MECP2_M ECP2_f1_HocoMoco 
                 CCCGGAG 
                 CTCCGGG 
               
               
                   
               
               
                 MAFK_Mafk_3106_PBM 
                 ATTTTGCTGA 
                 TCAGCAAAAT 
               
               
                   
               
               
                 TAL1_disc2 
                 AGATAAGAG 
                 CTCTTATCT 
               
               
                   
               
               
                 TWIST2_TWST1_f1_HocoMoco 
                 ACCCAGGTGG 
                 CCACCTGGGT 
               
               
                   
               
               
                 YY1_known1 
                 GAACACCATTTTTGAAC 
                 GTTCAAAAATGGTGTTC 
               
               
                   
               
               
                 NR2E3_MA0164.1_SELEX|NR2E3_1 
                 AAGCTTG 
                 CAAGCTT 
               
               
                   
               
               
                 EOMES_TBR1_2_SELEX|TBX3_TBX2_2_SELEX|TBR1_2|TBX 
                 AAGGTGTGAAA 
                 TTTCACACCTT 
               
               
                 2_2 
                   
                   
               
               
                   
               
               
                 LHX6_2 
                 AACCGCTAATTAGTGGA 
                 TCCACTAATTAGCGGTT 
               
               
                   
               
               
                 ASCL2_Ascl2_1_SELEX|ASCL2_2 
                 AGCAGCTGCT 
                 AGCAGCTGCT 
               
               
                   
               
               
                 MYB_3 
                 AGGGCCAGTTG 
                 CAACTGGCCCT 
               
               
                   
               
               
                 GATA2_Gata5_3768_PBM 
                 AGAGATAAG 
                 CTTATCTCT 
               
               
                   
               
               
                 AP1_known9 
                 ATGACTCA 
                 TGAGTCAT 
               
               
                   
               
               
                 SP9_SP1_f2_HocoMoco 
                 CCGGCCCCGCCCCCTCC 
                 GGGGAGGGGGCGGGG 
               
               
                   
                 CC 
                 CCGG 
               
               
                   
               
               
                 RARG_RARA_4_SELEX|RARA_5 
                 AGGGTCAAAAGGTCA 
                 TGACCTTTTGACCCT 
               
               
                   
               
               
                 ZFHX2_pTH5642_PBM|NOTO_pTH6268_PBM 
                 GTTAATTAAC 
                 GTTAATTAAC 
               
               
                   
               
               
                 UBP1_SRP000217_Tcfc2pl1_ChIP- 
                 CCGGTTCAAACCGGTTC 
                 GCCAGAACCGGTTTGAA 
               
               
                 seq|UBP1_SRP000217_Tcfcp2l1_ChIP-seq 
                 TGGC 
                 CCGG 
               
               
                   
               
               
                 ESRRG_ESRRG_1_SELEX|ESRRG_1 
                 AAGGTCATTTCAAGGTC 
                 TGACCTTGAAATGACCT 
               
               
                   
                 A 
                 T 
               
               
                   
               
               
                 CDX2_Cdx1_2245_PBM 
                 GGTAATAAA 
                 TTTATTACC 
               
               
                   
               
               
                 FOXO6_V$FOXO1_02_Transfac 
                 AACGTAAACAACAC 
                 GTGTTGTTTACGTT 
               
               
                   
               
               
                 MAFK_MAFG_si_HocoMoco 
                 AGTCATG 
                 CATGACT 
               
               
                   
               
               
                 MAZ_MAZ_f1_HocoMoco 
                 CCCTCCCTCCCCCCCCC 
                 GGGGGGGGGAGGGAG 
               
               
                   
                   
                 GG 
               
               
                   
               
               
                 TCF3_2 
                 AATAACAGGTGTTCAC 
                 GTGAACACCTGTTATT 
               
               
                   
               
               
                 FOXO6_FOXO6_3_SELEX|FOXO6_3 
                 GTCGTGTGGGGAAA 
                 TTTCCCCACACGAC 
               
               
                   
               
               
                 ESRRG_ESRRG_2_SELEX|ESRRG_2 
                 AAGGTCAGTCAAGGTCA 
                 TGACCTTGACTGACCTT 
               
               
                   
               
               
                 SIN3A_disc2 
                 GGCCACGTGA 
                 TCACGTGGCC 
               
               
                   
               
               
                 SOX7_SOX7_3_SELEX|SOX7_4 
                 CATGACTGAAATTCATC 
                 GATGAATTTCAGTCATG 
               
               
                   
               
               
                 TBPL2_MA0386.1_PBM|TBPL2_YER148W_798_DeBoer11 
                 ATCGAATATATATATCT 
                 GACTAGATATATATATT 
               
               
                   
                 AGTC 
                 CGAT 
               
               
                   
               
               
                 HOXC5_V$HOX13_01_Transfac 
                 TGCCAACTTCCCCATTA 
                 TGGAGGCGACCACTAAT 
               
               
                   
               
               
                   
                 GTGGTCGCCTCCA 
                 GGGGAAGTTGGCA 
               
               
                   
               
               
                 EMX2_1 
                 ACCACTAATTAGTGGAC 
                 GTCCACTAATTAGTGGT 
               
               
                   
               
               
                 ATF3_Mv43_ChIP-seq|TCF7L2_disc1 
                 ATGAGTCATC 
                 GATGACTCAT 
               
               
                   
               
               
                 NR1H4_3 
                 AGGGTTAATAAA 
                 TTTATTAACCCT 
               
               
                   
               
               
                 RAD21_disc4 
                 ACCTGGTGGC 
                 GCCACCAGGT 
               
               
                   
               
               
                 CBFB_PEBB_f1_HocoMoco 
                 CAAACCACAGA 
                 TCTGTGGTTTG 
               
               
                   
               
               
                 STAT_disc5 
                 AAATTCCTG 
                 CAGGAATTT 
               
               
                   
               
               
                 HNF4G_VSHNF4_01_B_Transfac 
                 GGGGTCAAAGGTCAC 
                 GTGACCTTTGACCCC 
               
               
                   
               
               
                 NKX2-5_MA0503.1_ChIP-seq 
                 AGCCACTCAAG 
                 CTTGAGTGGCT 
               
               
                   
               
               
                 TFCP2_VSCP2_01_Transfac 
                 CTGGGTAGAGC 
                 GCTCTACCCAG 
               
               
                   
               
               
                 GRHIA_GRHL1_2_SELEX|TFCP2_TFCP2_1_SELEX|GRHL1_2 
                 AAACCGGTTT 
                 AAACCGGTTT 
               
               
                 |TFCP2_4 
                   
                   
               
               
                   
               
               
                 NANOGP1_NANOG_f1_HocoMoco 
                 CCATTAAA 
                 TTTAATGG 
               
               
                   
               
               
                 NKX2-5_Nkx2-5_3436_PBM 
                 GCCACTTAAA 
                 TTTAAGTGGC 
               
               
                   
               
               
                 NKX2-5_NKX32_f1_HocoMoco 
                 AGTTAAGTGGA 
                 TCCACTTAACT 
               
               
                   
               
               
                 PAX4_5 
                 GAAAAATTTCCAATACT 
                 GGGGGGGGAGTGGAGT 
               
               
                   
                 CCACTCCCCCCCC 
                 ATTGGAAATTTTTC 
               
               
                   
               
               
                 NR2F2_NR2F1_4_SELEX|HNF4_known26 
                 CAAAGGTCAAGGG 
                 CCCTTGACCTTTG 
               
               
                   
               
               
                 HNF1_1 
                 GGTTAATAATTACCA 
                 TGGTAATTATTAACC 
               
               
                   
               
               
                 THRB_THB_f1_HocoMoco 
                 GGTCAGGTCA 
                 TGACCTGACC 
               
               
                   
               
               
                 IRF8_IRF8_1_SELEX|RF_known19 
                 ACGAAACCGAAACT 
                 AGTTTCGGTTTCGT 
               
               
                   
               
               
                 ONECUT3_ONECUT3_1_SELEX|ONECUT3_1 
                 AAAAAATCAATAAT 
                 ATTATTGATTTTTT 
               
               
                   
               
               
                 GLIS3_Imd_SANGER_5_FBgn0039039_B1H 
                 ACGACCCCCCACAG 
                 CTGTGGGGGGTCGT 
               
               
                   
               
               
                 E4F1_E4F1_f1_HocoMoco 
                 CGTGACGTC 
                 GACGTCACG 
               
               
                   
               
               
                 SOX10_1 
                 CTTTGTC 
                 GACAAAG 
               
               
                   
               
               
                 ETV5_ETS2_f1_HocoMoco 
                 CCACTTCCCGC 
                 GCGGGAAGTGG 
               
               
                   
               
               
                 CHD2_disc2|E2F_disc5 
                 AAAGGCGC 
                 GCGCCTTT 
               
               
                   
               
               
                 LHX5_1 
                 AGTATTTAATTAATTCG 
                 CGAATTAATTAAATACT 
               
               
                   
               
               
                 NR1H4_2 
                 AGGTCATTAACCC 
                 GGGTTAATGACCT 
               
               
                   
               
               
                 YY1_known3 
                 AGATGGCCG 
                 CGGCCATCT 
               
               
                   
               
               
                 ETV5_K562_GABP_HudsonAlpha_ChIP-seq 
                 CACTTCCGGTTCC 
                 GGAACCGGAAGTG 
               
               
                   
               
               
                 CUX1_V$CDP_01_Transfac|CUX1_1 
                 ATCGATTATTGG 
                 CCAATAATCGAT 
               
               
                   
               
               
                 PLAGL1_Plagl1_0972_PBM 
                 GGGGCCCCCC 
                 GGGGGGCCCC 
               
               
                   
               
               
                 HOXC10_Hoxa11_1_SELEX|HOXA11_2 
                 AATTTTACGACC 
                 GGTCGTAAAATT 
               
               
                   
               
               
                 SMAD1_Mad_FlyReg_FBgn0011648_B1H 
                 CGGCCGACGC 
                 GCGTCGGCCG 
               
               
                   
               
               
                 CTCF_HCPEpiC_CTCF_UW_ChIP- 
                 CGCCCCCTGGTGGC 
                 GCCACCAGGGGGCG 
               
               
                 seq|CTCF_HepG2_CTCF_UW_ChIP-seq 
                   
                   
               
               
                   
               
               
                 IRX3_Ara_Cell_FBgn0015904_B1H 
                 AAATAACA 
                 TGTTATTT 
               
               
                   
               
               
                 FOXO6_pTH3731_PBM|FOXO6_pTH3477_PBM 
                 TCGTAAACAA 
                 TTGTTTACGA 
               
               
                   
               
               
                 GFI1B_GFI1_f1_HocoMoco 
                 AAATCACAGC 
                 GCTGTGATTT 
               
               
                   
               
               
                 PKNOX2_MEIS2_1_SELEX|MEIS2_1 
                 TTGACAGCTGTCAA 
                 TTGACAGCTGTCAA 
               
               
                   
               
               
                 RFX8_MA0510.1_ChIP-seq 
                 CTCCCTGGCAACAGC 
                 GCTGTTGCCAGGGAG 
               
               
                   
               
               
                 NRF1_NRF1_1_SELEX|NRF1_known2 
                 TGCGCATGCGCA 
                 TGCGCATGCGCA 
               
               
                   
               
               
                 PLAGL1_PLAL1_si_HocoMoco 
                 CGGGGGGCCC 
                 GGGCCCCCCG 
               
               
                   
               
               
                 IRF3_IRF3_1_SELEX|IRF_known14 
                 CAGTTTCGGTTTCCGTTT 
                 GGGAAACGGAAACCGA 
               
               
                   
                 CCC 
                 AACTG 
               
               
                   
               
               
                 AL662830.5_MA0070.1_SELEX|PBX1_4 
                 CCATCAATCAAA 
                 TTTGATTGATGG 
               
               
                   
               
               
                 IRF_known9 
                 GAAAGCGAAACC 
                 GGTTTCGCTTTC 
               
               
                   
               
               
                 SETDB1_disc1 
                 CGGGGCATTCTGGGAAT 
                 GGACTACAATTCCCAGA 
               
               
                   
                 TGTAGTCC 
                 ATGCCCCG 
               
               
                   
               
               
                 GLIS3_Imd_SOLEXA_5_FBgn0039039_B1H 
                 CAGACCCCCCACAGA 
                 TCTGTGGGGGGTCTG 
               
               
                   
               
               
                 PRDM1_Mv112_ChIP-seq 
                 AAAGTGATA 
                 TATCACTTT 
               
               
                   
               
               
                 LHX9_LHX9_2_SELEX|LHX9_3 
                 TAATTGCCAATTA 
                 TAATTGGCAATTA 
               
               
                   
               
               
                 HNF4G_HNF4A_f1_HocoMoco 
                 AGGCCAAAGTCCA 
                 TGGACTTTGGCCT 
               
               
                   
               
               
                 TP53_V$P53_02_Transfac|TP53_2 
                 AGACATGCCT 
                 AGGCATGTCT 
               
               
                   
               
               
                 POU6F2_V$POU6F1_01_Transfac|POU6F1_1 
                 ATAAATTATGC 
                 GCATAATTTAT 
               
               
                   
               
               
                 GATA2_V$GATA3_01_Transfac|GATA_known3 
                 CCCTATCTC 
                 GAGATAGGG 
               
               
                   
               
               
                 ESRRG_MA0592.1_ChIP-seq 
                 CCAAGGTCACA 
                 TGTGACCTTGG 
               
               
                   
               
               
                 HMGN3_disc1 
                 CGCTGACTCA 
                 TGAGTCAGCG 
               
               
                   
               
               
                 RXRA_known9 
                 ATTAAGGGGTCACGACA 
                 TGTCGTGACCCCTTAAT 
               
               
                   
               
               
                 AP1_disc9 
                 ACTCATGC 
                 GCATGAGT 
               
               
                   
               
               
                 NFIL3_NFIL3_si_HocoMoco 
                 ATGCATTACATAAC 
                 GTTATGTAATGCAT 
               
               
                   
               
               
                 SOX17_SOX17_f2_HocoMoco 
                 CAACAATCTTCATTGTCC 
                 GGACAATGAAGATTGTT 
               
               
                   
                   
                 G 
               
               
                   
               
               
                 SRF_SRF_1_SELEX|SRF_known9 
                 ACCATATATGGC 
                 GCCATATATGGT 
               
               
                   
               
               
                 MYBL1_MYBL1_2_SELEX|MYBL1_3 
                 ACCGTTAACGGT 
                 ACCGTTAACGGT 
               
               
                   
               
               
                 TFE_1 
                 TCACATGA 
                 TCATGTGA 
               
               
                   
               
               
                 SREBF2_pTH5161_PBM 
                 ATCACGCGA 
                 TCGCGTGAT 
               
               
                   
               
               
                 PAX3_V$PAX3_01_Transfac|PAX3_2 
                 TCGTCACGCTTCA 
                 TGAAGCGTGACGA 
               
               
                   
               
               
                 PRDM16_MA0029.1_SELEX|RUNX1_8 
                 AAGATAAGATAACA 
                 TGTTATCTTATCTT 
               
               
                   
               
               
                 NFE2_disc1 
                 ATGACTCAGC 
                 GCTGAGTCAT 
               
               
                   
               
               
                 SRF_pTH10822_PBM 
                 CATATAAGG 
                 CCTTATATG 
               
               
                   
               
               
                 RBPJ_SUH_f1_HocoMoco 
                 CGTGGGAAA 
                 TTTCCCACG 
               
               
                   
               
               
                 MSX1_MSX2_f1_HocoMoco 
                 ACAATTA 
                 TAATTGT 
               
               
                   
               
               
                 MAFK_MAFG_1_SELEX|MAFG_1 
                 AAATTGCTGAGTCAGCA 
                 AATATGCTGACTCAGCA 
               
               
                   
                 TATT 
                 ATT 
               
               
                   
               
               
                 FOXD1_V$FOXJ2_02_Transfac|FOXJ2_2 
                 AAAAATATTATTAT 
                 ATAATAATATTTTT 
               
               
                   
               
               
                 RUNX1_RUNX1_f1_HocoMoco 
                 TAACCACAAA 
                 TTTGTGGTTA 
               
               
                   
               
               
                 ETS1_V$CETS1P54_02_Transfac 
                 CCACCGGAAATTA 
                 TAATTTCCGGTGG 
               
               
                   
               
               
                 RFX5_known3 
                 AGTTACTAGGCAAA 
                 TTTGCCTAGTAACT 
               
               
                   
               
               
                 HOXC5_MA0256.1_B1H|EVX2_MA0221.1_B1H 
                 CTAATGA 
                 TCATTAG 
               
               
                   
               
               
                 ESRRG_ESRRA_3_SELEX|ESRRG_ESRRA_6_SELEX|ESRRA_k 
                 CAAGGTCATTTCAAGGT 
                 TGACCTTGAAATGACCT 
               
               
                 nown9 
                 CA 
                 TG 
               
               
                   
               
               
                 TFAP2A_TFAP2C_1_SELEX|TFAP2A_TFAP2C_4_SELEX|TFA 
                 TGCCCCAGGGCA 
                 TGCCCTGGGGCA 
               
               
                 P2A_TFAP26_1_SELEX|TFAP26_21TFAP2_known14|TFAP2 
                   
                   
               
               
                 _known17 
                   
                   
               
               
                   
               
               
                 SOX15_SOX15_3_SELEX|SOX1_SOX2_2_SELEX|SOX1_SOX1 
                 ATGAATAACATTCAT 
                 ATGAATGTTATTCAT 
               
               
                 4_2_SELEX|SOX1_SOX2_6_SELEX|SOX1_Sox1_2_SELEX|SO 
                   
                   
               
               
                 X14_3|SOX15_4|SOX2_3|SOX2_7|SOX1_3 
                   
                   
               
               
                   
               
               
                 POU3F3_pTH9290_PBM 
                 AATTTGCATA 
                 TATGCAAATT 
               
               
                   
               
               
                 MLX_Mio_bigmax_SANGER_5_FBgn0039509_B1H 
                 ATCACGTG 
                 CACGTGAT 
               
               
                   
               
               
                 CDX2_Cad_Cell_FBgn0000251_B1H|HOXB13_pTH6143_PB 
                 TAATAAAA 
                 TTTTATTA 
               
               
                 M|CDX2_Cad_SOLEXA_FBgn0000251_B1H 
                   
                   
               
               
                   
               
               
                 INSM1_MA0155.1_COMPILED|INSM1_1 
                 CGCCCCCTGACA 
                 TGTCAGGGGGCG 
               
               
                   
               
               
                 MYBL1_Myb_1047_PBM 
                 TAACGGTCAA 
                 TTGACCGTTA 
               
               
                   
               
               
                 ARNT2_ARNT2_si_HocoMoco 
                 GCCTCCCACGCC 
                 GGCGTGGGAGGC 
               
               
                   
               
               
                 GATA2_V$GATA3_03_Transfac 
                 AAAGATCTTA 
                 TAAGATCTTT 
               
               
                   
               
               
                 CEBPA_HepG2_CEBPB_Stanford_ChIP-seq 
                 ATTGTGCAATC 
                 GATTGCACAAT 
               
               
                   
               
               
                 YY2_MA0095.2_ChIP-seq|YY2_TYY1 J2_HocoMoco 
                 CAAGATGGCGGC 
                 GCCGCCATCTTG 
               
               
                   
               
               
                 CEBPA_MA0466.1_ChIP-seq 
                 ATTGTGCAATA 
                 TATTGCACAAT 
               
               
                   
               
               
                 ZBTB7A_known2 
                 AAGCCCCCCAAAAAT 
                 ATTTTTGGGGGGCTT 
               
               
                   
               
               
                 MEF2B_V$MEF2_03_Transfac|MEF2_known4 
                 TGTGGTTCTAAAAATAG 
                 TTGTTCTATTTTTAGAAC 
               
               
                   
                 AACAA 
                 CACA 
               
               
                   
               
               
                 EGR1_known4 
                 CCCGCCCCCGCCCC 
                 GGGGCGGGGGCGGG 
               
               
                   
               
               
                 GATA1_GATAe_SANGER_5_FBgn0038391_B1H 
                 CTTATCA 
                 TGATAAG 
               
               
                   
               
               
                 PAX2_PAX2_f1_HocoMoco 
                 GTTCAGTCATGCGTGAC 
                 TGTCACGCATGACTGAA 
               
               
                   
                 A 
                 C 
               
               
                   
               
               
                 PAX4_6 
                 GTGGGCTAATTAGTTCA 
                 TGAACTAATTAGCCCAC 
               
               
                   
               
               
                 ARNT2_tgo_cyc_SANGER_5_FBgn0023094_B1H|BHLHE40 
                 GTCACGTGA 
                 TCACGTGAC 
               
               
                 _Bhlhb2_1274_PBM|ARNT2_tgo_cyc_SANGER_5_FBgn001 
                   
                   
               
               
                 5014_B1H 
                   
                   
               
               
                   
               
               
                 EN2_EN1_2_SELEX|EN1_5 
                 TAATTGACCAATTA 
                 TAATTGGTCAATTA 
               
               
                   
               
               
                 NR5A2_1 
                 CTGACCTTGAAC 
                 GTTCAAGGTCAG 
               
               
                   
               
               
                 YY2_YY2_3_SELEX 
                 ATGGCGGCATGG 
                 CCATGCCGCCAT 
               
               
                   
               
               
                 MAFK_MAFK_3_SELEX|MAF_known8 
                 AAAATTGCTGAC 
                 GTCAGCAATTTT 
               
               
                   
               
               
                 ZBTB42_ZNF238_1_SELEX|ZBTB18_2 
                 AATCCAGATGTTG 
                 CAACATCTGGATT 
               
               
                   
               
               
                 TA L2_TAL1_f1_Hoco Moco 
                 GAACAGATGGTC 
                 GACCATCTGTTC 
               
               
                   
               
               
                 CPEB1_CPEB1_1_SELEX|CPEB1_1 
                 AATAAAAA 
                 TTTTTATT 
               
               
                   
               
               
                 TCF7L2_pan_FlyReg_FBgn0085432_B1H|TCF7L1_Tcf3_378 
                 CTTTGATC 
                 GATCAAAG 
               
               
                 7_PBM 
                   
                   
               
               
                   
               
               
                 ETS_known6 
                 ACCGGAAGTGCA 
                 TGCACTTCCGGT 
               
               
                   
               
               
                 TCF7L1_MA0523.1_ChIP-seq 
                 AAAGATCAAAGGAA 
                 TTCCTTTGATCTTT 
               
               
                   
               
               
                 ETV5_ETV5_f1_HocoMoco 
                 GACAGGAAGTAAC 
                 GTTACTTCCTGTC 
               
               
                   
               
               
                 ETV5_ERG_f1_HocoMoco 
                 ACCGGAAATCC 
                 GGATTTCCGGT 
               
               
                   
               
               
                 MZFl_MZF1_f1_HocoMoco 
                 GGTGGGGAA 
                 TTCCCCACC 
               
               
                   
               
               
                 RUNX_2 
                 ACGTTTGTGGTTAGC 
                 GCTAACCACAAACGT 
               
               
                   
               
               
                 PBX1_5 
                 TCACCCATCAATAATCA 
                 TGATTATTGATGGGTGA 
               
               
                   
               
               
                 EGR3_EGR4_f1_HocoMoco 
                 GCCCTGCCGCC 
                 GGCGGCAGGGC 
               
               
                   
               
               
                 POU3F3_POU3F2_1_SELEX|POU3F2_5 
                 TAATTTATGCATA 
                 TATGCATAAATTA 
               
               
                   
               
               
                 LHX2_1 
                 GTTCACTAATTAGTTTA 
                 TAAACTAATTAGTGAAC 
               
               
                   
               
               
                 MYOD1_V$MYOD_01_Transfac 
                 CAACACCTGTCC 
                 GGACAGGTGTTG 
               
               
                   
               
               
                 GATA2_Mv73_ChIP-seq 
                 CTGGTGGGGGCAGATA 
                 TCCTTATCTGCCCCCACC 
               
               
                   
                 AGGA 
                 AG 
               
               
                   
               
               
                 TCF4_GM12878_TCF12_HudsonAlpha_ChIP-seq 
                 ACAGCTGCTGC 
                 GCAGCAGCTGT 
               
               
                   
               
               
                 TCF7L2_known4 
                 CATCAAAGGG 
                 CCCTTTGATG 
               
               
                   
               
               
                 HNF4_known8 
                 AAAGTCCAA 
                 TTGGACTTT 
               
               
                   
               
               
                 FOXO6_N$DAF16_01_Transfac 
                 GTGTTGTTTACAAC 
                 GTTGTAAACAACAC 
               
               
                   
               
               
                 HMBOX1_1 
                 GAAAACTAGTTAACATC 
                 GATGTTAACTAGTTTTC 
               
               
                   
               
               
                 CTCF_NHEK_CTCF_UW_ChIP-seq 
                 CCACCAGGGGGCGC 
                 GCGCCCCCTGGTGG 
               
               
                   
               
               
                 ALX1_2 
                 CGAATTAATTAATCACC 
                 GGTGATTAATTAATTCG 
               
               
                   
               
               
                 ELF1_MA0473.1_ChIP-seq 
                 CACTTCCTGGTTC 
                 GAACCAGGAAGTG 
               
               
                   
               
               
                 EOMES_TBX21_1_SELEX|TBX21_1 
                 GGTGTGAATTCACACC 
                 GGTGTGAATTCACACC 
               
               
                   
               
               
                 AL662828.6_V$ATF6_01_Transfac|ATF6_1 
                 CCACGTCA 
                 TGACGTGG 
               
               
                   
               
               
                 ATF3_pTH2684_PBM 
                 ACGTCATCA 
                 TGATGACGT 
               
               
                   
               
               
                 E2F_known22 
                 GCGCCAAA 
                 TTTGGCGC 
               
               
                   
               
               
                 POU5F1_known1 
                 ATTGTCATGCTAATG 
                 CATTAGCATGACAAT 
               
               
                   
               
               
                 ELF1_GM12878_ELF1_HudsonAlpha_ChIP-seq 
                 CCACTTCCGGGTTCG 
                 CGAACCCGGAAGTGG 
               
               
                   
               
               
                 MAF_known4 
                 AAATTTGCTGACTTAGC 
                 GCTAAGTCAGCAAATTT 
               
               
                   
               
               
                 HEY1_disc2 
                 GCCCCGCTGCCGCCGC 
                 GCGGCGGCAGCGGGGC 
               
               
                   
               
               
                 FOXD1_HepG2_FOXA2_HudsonAlpha_ChIP-seq 
                 CTCTGTTTACTTTGC 
                 GCAAAGTAAACAGAG 
               
               
                   
               
               
                 HNF1A_MA0046.1_COMPILED 
                 GGTAATTATTAACC 
                 GGTTAATAATTACC 
               
               
                   
               
               
                 HMGA2_HMGA1J1_HocoMoco 
                 AAAATAC 
                 GTATTTT 
               
               
                   
               
               
                 SOX18_SOX18_f1_HocoMoco 
                 GAACCCATTGTTCTTTTC 
                 GGAAAAGAACAATGGG 
               
               
                   
                 C 
                 TTC 
               
               
                   
               
               
                 SRF_known6 
                 ATGGCCATATAAGGAG 
                 CATCTCCTTATATGGCCA 
               
               
                   
                 ATG 
                 T 
               
               
                   
               
               
                 TGIF2LY_TGIF2LX_1_SELEX|ENSG00000234254_TGIF1_1_S 
                 TGACAGCTGTCA 
                 TGACAGCTGTCA 
               
               
                 ELEX|ENSG00000234254_TGIF2_1_SELEX|TGIF1_3|TGIF2L 
                   
                   
               
               
                 X_1|TGIF2_2 
                   
                   
               
               
                   
               
               
                 GFI1B_sens_SANGER_10_FBgn0002573_B1H 
                 AAATCACGGC 
                 GCCGTGATTT 
               
               
                   
               
               
                 SIX5_Mv123_ChIP-seq|ETS_disc5 
                 ACAACTCC 
                 GGAGTTGT 
               
               
                   
               
               
                 RFX8_H1-hESC_RFX5_Stanford_ChIP-seq 
                 TCACCTGTTGCTAGGCA 
                 TCTGCCTAGCAACAGGT 
               
               
                   
                 GA 
                 GA 
               
               
                   
               
               
                 GBX2_GBX1_1_SELEX|HOXA4_Hoxa2_1_SELEX|HOXC5_H 
                 ACTAATTAGC 
                 GCTAATTAGT 
               
               
                 OXB3_1_SELEX|LHX8_LHX6_1_SELEX|GBX1_2|HOXB3_2| 
                   
                   
               
               
                 HOXA2_3|LHX6_3 
                   
                   
               
               
                   
               
               
                 EGR3_V$EGR2_01_Transfac|EGR1_known2 
                 ACGCCCACGCAA 
                 TTGCGTGGGCGT 
               
               
                   
               
               
                 ZBTB4_ZBTB4!METH_f1_HocoMoco 
                 CAATAGCGGTGGTGG 
                 CCACCACCGCTATTG 
               
               
                   
               
               
                 SP1_known6|SP1_known7 
                 CCCCGCCCCC 
                 GGGGGCGGGG 
               
               
                   
               
               
                 EGR3_V$EGR3_01_Transfac|EGR3_V$EGR1_01_Transfac| 
                 ACGCCCACGCAT 
                 ATGCGTGGGCGT 
               
               
                 EGR1_known1|EGR3_1 
                   
                   
               
               
                   
               
               
                 SP5_pTH9394_PBM 
                 ACACGCCCCT 
                 AGGGGCGTGT 
               
               
                   
               
               
                 HOXD12_Hoxc12_3480_PBM|HOXD12_Hoxd12_3481_PB 
                 GGTCATAAAA 
                 TTTTATGACC 
               
               
                 M|HOXC10_Hoxb9_3413_PBM|HOXC10_Hoxc11_3718_P 
                   
                   
               
               
                 BM 
                   
                   
               
               
                   
               
               
                 RAD21_disc1 
                 GGCCACCAGATGGCACT 
                 TATAGTGCCATCTGGTG 
               
               
                   
                 ATA 
                 GCC 
               
               
                   
               
               
                 HHEX_pTH6423_PBM 
                 GGGCAATAGA 
                 TCTATTGCCC 
               
               
                   
               
               
                 PPARA_V$PPARA_01_Transfac|PPARA_1 
                 CAAAACTAGGTCAAAG 
                 TGACCTTTGACCTAGTTT 
               
               
                   
                 GTCA 
                 TG 
               
               
                   
               
               
                 GLI1_GLI1_f1_HocoMoco 
                 AGACCACCCAG 
                 CTGGGTGGTCT 
               
               
                   
               
               
                 SMAD2_SMAD3_f1_HocoMoco 
                 GGCCAGACAC 
                 GTGTCTGGCC 
               
               
                   
               
               
                 GLI1_GLI2_f1_HocoMoco|GLI1_Ci_SANGER_5_FBgn00048 
                 AGACCACCCAC 
                 GTGGGTGGTCT 
               
               
                 59_81H 
                   
                   
               
               
                   
               
               
                 SPIC_MA0080.3_ChIP-seq|SPIC_GSE11329_Sfpi1_ChIP-seq 
                 AAAAAGAGGAAGTGA 
                 TCACTTCCTCTTTTT 
               
               
                   
               
               
                 FOXD1_MA0040.1_SELEX|FOXQ1_2 
                 AATAAACAATA 
                 TATTGTTTATT 
               
               
                   
               
               
                 HEY1_pTH5102_PBM|NPAS2_tai_Clk_SANGER_5_FBgn002 
                 GACACGTGC 
                 GCACGTGTC 
               
               
                 3076_B1H 
                   
                   
               
               
                   
               
               
                 USF1_pTH4376_PBM 
                 CCCACGTGATA 
                 TATCACGTGGG 
               
               
                   
               
               
                 CBX5_1 
                 AATATTCAACAG 
                 CTGTTGAATATT 
               
               
                   
               
               
                 TFAP2A_TFAP2A_5_SELEX 
                 TGCCCTAGGGCA 
                 TGCCCTAGGGCA 
               
               
                   
               
               
                 NFYC_NFYC_f1_HocoMoco 
                 CAGCCAATCAGCGC 
                 GCGCTGATTGGCTG 
               
               
                   
               
               
                 FOXD1_MA0033.1_SELEX|FOXL1_2 
                 TATACATA 
                 TATGTATA 
               
               
                   
               
               
                 ETV5_GM12878_GABP_HudsonAlpha_ChIP-seq 
                 CACTTCCGGCG 
                 CGCCGGAAGTG 
               
               
                   
               
               
                 RARG_RARG_5_SELEX|RARG_5 
                 AAGGTCAAGCAAAGGT 
                 TGACCTTTGCTTGACCTT 
               
               
                   
                 CA 
                   
               
               
                   
               
               
                 HOXC5_Abd- 
                 TCAATTAA 
                 TTAATTGA 
               
               
                 A_FlyReg_FBgn0000014_81H|HOXC5_HXD4_f1_HocoMoc 
                   
                   
               
               
                 o 
                   
                   
               
               
                   
               
               
                 FOXD1_FOXI1_f1_HocoMoco 
                 AACCAATCAGAG 
                 CTCTGATTGGTT 
               
               
                   
               
               
                 ETV5_ELK1_3_SELEX|ETS_known13 
                 CACTTCCGCCGGAAGTG 
                 CACTTCCGGCGGAAGTG 
               
               
                   
               
               
                 SPIC_SPIB_f1_HocoMoco 
                 AAAAAGAGGAAG 
                 CTTCCTCTTTTT 
               
               
                   
               
               
                 POU4F1_POU4F2_1_SELEX|POU4F1_POU4F3_1_SELEX|PO 
                 ATGCATAATTAATGAG 
                 CTCATTAATTATGCAT 
               
               
                 U4F1_POU4F2_2_SELEX|POU4F2_1|POU4F2_2|POU4F3_2 
                   
                   
               
               
                   
               
               
                 HDX_Hdx_3845_PBM 
                 GAAATCA 
                 TGATTTC 
               
               
                   
               
               
                 GCM1_pTH9341_PBM|GCM1_pTH9357_PBM|GCM1_GC 
                 TACCCGCATA 
                 TATGCGGGTA 
               
               
                 M2_1_SELEX|GCM2_1 
                   
                   
               
               
                   
               
               
                 MSX2_1 
                 AGCGCTAATTGGTCTTC 
                 GAAGACCAATTAGCGCT 
               
               
                   
               
               
                 STAT5B_STA5A_do_HocoMoco 
                 AATTCCTGGAAA 
                 TTTCCAGGAATT 
               
               
                   
               
               
                 PKNOX2_MEIS2_2_SELEX|MEIS2_2 
                 GCTGTCAA 
                 TTGACAGC 
               
               
                   
               
               
                 AL662830.5_V$PBX1_02_Transfac|PBX1_2 
                 AATTTGATTGATGTG 
                 CACATCAATCAAATT 
               
               
                   
               
               
                 LHX8_Lhx8_1_SELEX|LHX8_2 
                 CTAATTAGCGCTAATTA 
                 TTAATTAGCGCTAATTA 
               
               
                   
                 A 
                 G 
               
               
                   
               
               
                 RFX8_RFX1_4537_PBM 
                 GTAGCAACCA 
                 TGGTTGCTAC 
               
               
                   
               
               
                 BCL6B_BCL66_1_SELEX|BCL6B_2 
                 TGAATTCCTAGAAAGCA 
                 TGCTTTCTAGGAATTCA 
               
               
                   
               
               
                 JUN_HepG2_CJUN_Stanford_ChIP-seq 
                 GAGGATGACGTCATC 
                 GATGACGTCATCCTC 
               
               
                   
               
               
                 ATOH7_MA0461.1_ChIP-seq 
                 CAGATGGC 
                 GCCATCTG 
               
               
                   
               
               
                 MYBL1_MYBL1_1_SELEX|MYBL1_2 
                 ACCGTTAAACGG 
                 CCGTTTAACGGT 
               
               
                   
               
               
                 TLX3_TLX1_f1_HocoMoco 
                 CGCCAAGGAGC 
                 GCTCCTTGGCG 
               
               
                   
               
               
                 ETS_known5 
                 AATTACTTCCTGTC 
                 GACAGGAAGTAATT 
               
               
                   
               
               
                 STAT_disc4 
                 ATTGCACAA 
                 TTGTGCAAT 
               
               
                   
               
               
                 RARG_Rara_2_SELEX|RARA_9 
                 AGGTCACTCAAAGGTCA 
                 TGACCTTTGAGTGACCT 
               
               
                   
               
               
                 XBP1_XBP1_f1_HocoMoco 
                 GACGTGTCATTA 
                 TAATGACACGTC 
               
               
                   
               
               
                 ESRRB_1 
                 AGCTCAAGGTCA 
                 TGACCTTGAGCT 
               
               
                   
               
               
                 MYOD1_MA0499.1_ChIP-seq 
                 AGGGACAGCTGCA 
                 TGCAGCTGTCCCT 
               
               
                   
               
               
                 CEBPA_K562_CEBPB_Stanford_ChIP-seq 
                 GATTGTGCAATACC 
                 GGTATTGCACAATC 
               
               
                   
               
               
                 MAFB_Mafb_3_SELEX|MAF_known12 
                 AATGCTTACGTCAGCAC 
                 AGTGCTGACGTAAGCAT 
               
               
                   
                 T 
                 T 
               
               
                   
               
               
                 NPAS2_Met_Clk_SANGER_5_FBgn0023076_B1H 
                 CACGTGTC 
                 GACACGTG 
               
               
                   
               
               
                 HOXC10_HOXA10_2_SELEX|HOXA10_3 
                 GGTAATAAAAA 
                 TTTTTATTACC 
               
               
                   
               
               
                 ONECUT3_ONECUT1_1_SELEX|ONECUT3_ONECUT1_2_SEL 
                 AAAAAATCGATAAT 
                 ATTATCGATTTTTT 
               
               
                 EX|ONECUT3_ONECUT2_1_SELEX|ONECUT1_2|ONECUT1 
                   
                   
               
               
                 _3|PNECUT2_1 
                   
                   
               
               
                   
               
               
                 EBF1_known2 
                 GTCCCTTGGGA 
                 TCCCAAGGGAC 
               
               
                   
               
               
                 TERF2_pTH7805_PBM 
                 CTAGGGTTA 
                 TAACCCTAG 
               
               
                   
               
               
                 PAX5_known3 
                 CTGGAACTCAC 
                 GTGAGTTCCAG 
               
               
                   
               
               
                 SOX1_SOX14_1_SELEX|SOX14_2 
                 ACAATAACATTG 
                 CAATGTTATTGT 
               
               
                   
               
               
                 SRF_known4 
                 CCCATATAAGGAGATGG 
                 GCCATCTCCTTATATGG 
               
               
                   
                 C 
                 G 
               
               
                   
               
               
                 CTCF_HEEpiC_CTCF_UW_ChIP-seq 
                 CCACCAGAGGGCG 
                 CGCCCTCTGGTGG 
               
               
                   
               
               
                 CTCF_HeLa-53_CTCF_Broad_ChIP- 
                 AGCGCCCCCTGGTGG 
                 CCACCAGGGGGCGCT 
               
               
                 seq|CTCF_SRP000217_Ctcf_ChIP- 
                   
                   
               
               
                 seq|CTCF_NHLF_CTCF_Broad_ChIP- 
                   
                   
               
               
                 seq|CTCF_HPAF_CTCF_UW_ChIP- 
                   
                   
               
               
                 seq|CTCF_HepG2_CTCF_HudsonAlpha_ChIP-seq 
                   
                   
               
               
                   
               
               
                 PAX7_1 
                 CGAACTAATTAGTACTA 
                 TAGTACTAATTAGTTCG 
               
               
                   
               
               
                 NR2E3_Hr51_SANGER_5_FBgn0034012_B1H 
                 AAAAATCAAAGGT 
                 ACCTTTGATTTTT 
               
               
                   
               
               
                 CR936877.3_RXRG_4_SELEX|CR936877.3_RXRA_2_SELEX| 
                 GGGGTCATGACCCC 
                 GGGGTCATGACCCC 
               
               
                 RXRA_known11 
                   
                   
               
               
                   
               
               
                 DUXA_DUXA_1_SELEX|DUXA_1 
                 CTAATTTAATCAA 
                 TTGATTAAATTAG 
               
               
                   
               
               
                 ESR2_MA0112.2_ChIP-seq|ESRRA_known4 
                 AGGTCAGGGTGACCTG 
                 GGCCCAGGTCACCCTGA 
               
               
                   
                 GGCC 
                 CCT 
               
               
                   
               
               
                 SPDEF_SPDEF_3_SELEX|SPDEF_4 
                 GCAGTAAGAAGTATAC 
                 GTATACTTCTTACTGC 
               
               
                   
               
               
                 YY2_K562b_YY1_UCD_ChIP-seq 
                 CAAGATGGCGGCGGC 
                 GCCGCCGCCATCTTG 
               
               
                   
               
               
                 ZIC1_2 
                 CACCCCCGGGGGGG 
                 CCCCCCCGGGGGTG 
               
               
                   
               
               
                 ESRRG_ESRRG_3_SELEX|ESRRG_pTH2311_PBM|ESRRG_3 
                 ATGACCTTGA 
                 TCAAGGTCAT 
               
               
                   
               
               
                 SP9_pTH5423_PBM 
                 GAGCGGGA 
                 TCCCGCTC 
               
               
                   
               
               
                 SMARCC1_SMRC1_f1_HocoMoco 
                 CTGAGTCAC 
                 GTGACTCAG 
               
               
                   
               
               
                 ISL2_tup_SOLEXA_10_FBgn0003896_B1H 
                 CTTAATTGA 
                 TCAATTAAG 
               
               
                   
               
               
                 TFAP2A_Tcfap2b_3988_PBM 
                 CCTGAGGCGA 
                 TCGCCTCAGG 
               
               
                   
               
               
                 E2F3_E2F3_si_HocoMoco 
                 CGCGCGAAAC 
                 GTTTCGCGCG 
               
               
                   
               
               
                 TEAD1_MA0090.1_COMPILED|TEAD1_2 
                 CACATTCCTCCG 
                 CGGAGGAATGTG 
               
               
                   
               
               
                 ESRRA_known3 
                 ACCGTGACCTG 
                 CAGGTCACGGT 
               
               
                   
               
               
                 KLF4_CG9895_SOLEXA_5_FBgn0034810_B1H 
                 GGCCACGCCCA 
                 TGGGCGTGGCC 
               
               
                   
               
               
                 RARG_RARB_1_SELEX|RARG_Rarb_1_SELEX|RARB_1 
                 AAAGGTCAAAAGGTCA 
                 TGACCTTTTGACCTTT 
               
               
                   
               
               
                 RARG_pTH4269_PBM|RARG_pTH2804_PBM 
                 AGAGGTCACC 
                 GGTGACCTCT 
               
               
                   
               
               
                 ZEB1_known5 
                 CACCTG 
                 CAGGTG 
               
               
                   
               
               
                 NR2C2_pTH1284_PBM 
                 AGAGGTCACG 
                 CGTGACCTCT 
               
               
                   
               
               
                 E2F1_E2F1_f2_HocoMoco|E2F4_E2F4_do_HocoMoco 
                 AATTGGCGGGAAAA 
                 TTTTCCCGCCAATT 
               
               
                   
               
               
                 MAFK_MAFK_2_SELEX|MAF_known7 
                 AAAATGCTGACTCAGCA 
                 AAAATGCTGAGTCAGCA 
               
               
                   
                 TTTT 
                 TTTT 
               
               
                   
               
               
                 ENSG00000250096_MA0511.1_ChIP-seq 
                 CAAACCACAAACCCC 
                 GGGGTTTGTGGTTTG 
               
               
                   
               
               
                 EP300_disc8 
                 CGGCGCCCGC 
                 GCGGGCGCCG 
               
               
                   
               
               
                 ETV5_Ets96B_SANGER_5_FBgn0039225_B1H 
                 ACCGGAAGTAC 
                 GTACTTCCGGT 
               
               
                   
               
               
                 RFX5_disc3 
                 AACTGATGA 
                 TCATCAGTT 
               
               
                   
               
               
                 HLF_pTH9052_PBM 
                 TATTTACGTAACA 
                 TGTTACGTAAATA 
               
               
                   
               
               
                 FOXD1_fd64A_SANGER_5_FBgn0004895_B1H 
                 TATAAACA 
                 TGTTTATA 
               
               
                   
               
               
                 RFX7_1 
                 CCGCATAGCAACGGA 
                 TCCGTTGCTATGCGG 
               
               
                   
               
               
                 SEF1_1 
                 AACACGGATATCTGTGG 
                 GACCACAGATATCCGTG 
               
               
                   
                 TC 
                 TT 
               
               
                   
               
               
                 NFIA_NFIX_4_SELEX 
                 CTGGCAAATTGCCAA 
                 TTGGCAATTTGCCAG 
               
               
                   
               
               
                 POU2F2_1|POU2F3_1 
                 TCTAATTTGCATACAA 
                 TTGTATGCAAATTAGA 
               
               
                   
               
               
                 REST_PFSK-1_NRSF_HudsonAlpha_ChIP-seq 
                 CAGCACCATGGACAG 
                 CTGTCCATGGTGCTG 
               
               
                   
               
               
                 GRHL1_GRHL1_3_SELEX|GRHL1_3 
                 AAAACCGGTTTT 
                 AAAACCGGTTTT 
               
               
                   
               
               
                 NR1H3_EcR_SANGER_5_FBgn0000546_B1H 
                 ATGACCTC 
                 GAGGTCAT 
               
               
                   
               
               
                 SREBP_known3 
                 CACCCCA 
                 TGGGGTG 
               
               
                   
               
               
                 TBX1_TBX1_5_SELEX|TBX1_4 
                 TTCACACCTAGAGGTGT 
                 TTCACACCTCTAGGTGT 
               
               
                   
                 GAA 
                 GAA 
               
               
                   
               
               
                 REST_disc10 
                 AAGGTGCTG 
                 CAGCACCTT 
               
               
                   
               
               
                 SPIC_SP|1_1_SELEX|SPIC_SPIB_1_SELEX|SPIC_Spic_1_SELE 
                 AAAAAGCGGAAGTA 
                 TACTTCCGCTTTTT 
               
               
                 X|SPI1_known4|SPIB_2|SPIC_2 
                   
                   
               
               
                   
               
               
                 MAX_GM12878_MAX_Stanford_ChIP-seq 
                 CAGTCACGTGGTC 
                 GACCACGTGACTG 
               
               
                   
               
               
                 MYBL2_pTH3712_PBM 
                 CGACCGTTA 
                 TAACGGTCG 
               
               
                   
               
               
                 TFAP2A_TFAP2A_4_SELEX 
                 AGCCTGAGGCA 
                 TGCCTCAGGCT 
               
               
                   
               
               
                 ZNF691_1 
                 ATAGTGAGCACTGTTCG 
                 CGAACAGTGCTCACTAT 
               
               
                   
               
               
                 GMEB2_GMEB2_2_SELEX|GMEB2_2 
                 AACGTAACCACGTA 
                 TACGTGGTTACGTT 
               
               
                   
               
               
                 STAT1_STAT1_f2_HocoMoco 
                 CATTTCCCGGAAATG 
                 CATTTCCGGGAAATG 
               
               
                   
               
               
                 NR2E1_tll_FlyReg_FBgn0003720_B1H 
                 AAAGTCA 
                 TGACTTT 
               
               
                   
               
               
                 RELA_GM12878_NFKB_Stanford_ChIP-seq 
                 AAGGGGATTTCCAA 
                 TTGGAAATCCCCTT 
               
               
                   
               
               
                 PTF1A_Fer1_SANGER_5_FBgn0037475_B1H 
                 ACGACAGCTGACG 
                 CGTCAGCTGTCGT 
               
               
                   
               
               
                 MSX1_V$MSX1_01_Transfac|MSX1_1 
                 CAATTACGG 
                 CCGTAATTG 
               
               
                   
               
               
                 TFAP2A_HeLa-S3_AP2ALPHA_UCD_ChIP-seq 
                 ACTGCCTCAGGGCAT 
                 ATGCCCTGAGGCAGT 
               
               
                   
               
               
                 GATA2_V$GATA1_03_Transfac|GATA_known5 
                 AGGAAGATTACCGC 
                 GCGGTAATCTTCCT 
               
               
                   
               
               
                 ELF3_EHF_si_HocoMoco 
                 AAACCCGGAAGTA 
                 TACTTCCGGGTTT 
               
               
                   
               
               
                 ZNF282_ZNF282_1_SELEX|ZNF282_1 
                 CTTTCCCACAACACGAC 
                 GTCGTGTTGTGGGAAA 
               
               
                   
                   
                 G 
               
               
                   
               
               
                 ZNF232_ZNF232_1_SELEX|ZNF232_1 
                 ATGTTAAATGTAGATTA 
                 CTTAATCTACATTTAACA 
               
               
                   
                 AG 
                 T 
               
               
                   
               
               
                 ALX3_1 
                 CTCAGCTAATTAGTTTA 
                 TAAACTAATTAGCTGAG 
               
               
                   
               
               
                 POU3F3_pTH9245_PBM 
                 ATGCTAATTA 
                 TAATTAGCAT 
               
               
                   
               
               
                 PRDM16_V$EVI1_05_Transfac|PRDM16_V$EVI1_03_Trans 
                 AGATAAGATAA 
                 TTATCTTATCT 
               
               
                 fac|RUNX1_4|RUNX1_6 
                   
                   
               
               
                   
               
               
                 HOXB13_Hoxb13_3479_PBM|HOXB13_Hoxc13_3127_PB 
                 GCTCATAAAA 
                 TTTTATGAGC 
               
               
                 M 
                   
                   
               
               
                   
               
               
                 NR2F2_COT2_f2_HocoMoco 
                 AAGGTCAAAGGTCAA 
                 TTGACCTTTGACCTT 
               
               
                   
               
               
                 IRF9_IRF9_f1_HocoMoco 
                 AGTTTCGCTTTC 
                 GAAAGCGAAACT 
               
               
                   
               
               
                 EGR3_Egr3_1_SELEX|EGR3_3 
                 AAATGCGTGGGCGTA 
                 TACGCCCACGCATTT 
               
               
                   
               
               
                 DNMT1_pTH7029_PBM 
                 CCCCGCGGCC 
                 GGCCGCGGGG 
               
               
                   
               
               
                 FOXD1_Foxc1_2_SELEX|FOXC1_7 
                 ATAAACA 
                 TGTTTAT 
               
               
                   
               
               
                 GCM1_pTH7965_PBM|GCM1_Gcm1_3732_PBM 
                 ACCCGCATC 
                 GATGCGGGT 
               
               
                   
               
               
                 SRF_V$SRF_01_Transfac|SRF_known1 
                 ATGCCCATATATGGTAA 
                 ATTACCATATATGGGCA 
               
               
                   
                 T 
                 T 
               
               
                   
               
               
                 PAX9_pTH8556_PBM 
                 CATGACCACC 
                 GGTGGTCATG 
               
               
                   
               
               
                 TLX2_2 
                 AAGTTATTAATTAATTA 
                 TAATTAATTAATAACTT 
               
               
                   
               
               
                 ZNF691_Zfp691_0895_PBM 
                 AGGAGCAC 
                 GTGCTCCT 
               
               
                   
               
               
                 ETV5_Ets65A_SANGER_10_FBgn0005658_B1H 
                 ATTTCCGG 
                 CCGGAAAT 
               
               
                   
               
               
                 SOX17_Sox17_2_SELEX|SOX17_5 
                 ATGAATGAAATTCAT 
                 ATGAATTTCATTCAT 
               
               
                   
               
               
                 ATF5_ATF4_1_SELEX|ATF4_2 
                 GGATGATGCAATA 
                 TATTGCATCATCC 
               
               
                   
               
               
                 XBP1_V$HTF_01_Transfac 
                 ATTAAATGACACGTCAT 
                 CAGAAAGATGACGTGTC 
               
               
                   
                 CTTTCTG 
                 ATTTAAT 
               
               
                   
               
               
                 SIX6_pTH5437_PBM 
                 TAGGGGATAA 
                 TTATCCCCTA 
               
               
                   
               
               
                 TP63_TP63_1_SELEX|TP63_1 
                 AACATGTTGGGACATGT 
                 GACATGTCCCAACATGT 
               
               
                   
                 C 
                 T 
               
               
                   
               
               
                 ZBTB33_disc4 
                 AACCTCGC 
                 GCGAGGTT 
               
               
                   
               
               
                 TBX3_TBX4_2_SELEX|TBX3_TBX5_2_SELEX|TBX4_2|TBX5_ 
                 AGGTGTGAAATTTCACA 
                 AGGTGTGAAATTTCACA 
               
               
                 5 
                 CCT 
                 CCT 
               
               
                   
               
               
                 GATA_disc2 
                 GTGTGAGTCA 
                 TGACTCACAC 
               
               
                   
               
               
                 RFX3_1 
                 TGTGACCCTTAGCAACC 
                 TTAATCGGTTGCTAAGG 
               
               
                   
                 GATTAA 
                 GTCACA 
               
               
                   
               
               
                 AP1_disc6 
                 AAAACCCGGAGCGGA 
                 TCCGCTCCGGGTTTT 
               
               
                   
               
               
                 ZFHX3_ZFHX3_f1_HocoMoco 
                 ATTAATAATTA 
                 TAATTATTAAT 
               
               
                   
               
               
                 HOXC10_HOXD11_2_SELEX|HOXD11_3 
                 GGTAATAAAA 
                 TTTTATTACC 
               
               
                   
               
               
                 HOXA4_Ind_Cell_FBgn0025776_B1H 
                 CACTAATTA 
                 TAATTAGTG 
               
               
                   
               
               
                 NKX2-6_1 
                 AATGTTAAGTGGCTTA 
                 TAAGCCACTTAACATT 
               
               
                   
               
               
                 SP9_SP1_f1_HocoMoco|SP9_MA0079.3_ChIP-seq 
                 GCCCCGCCCCC 
                 GGGGGCGGGGC 
               
               
                   
               
               
                 BARHL2_CG11085_SOLEXA_FBgn0030408_B1H 
                 ACCAATTAAA 
                 TTTAATTGGT 
               
               
                   
               
               
                 TEF_pTH4377_PBM 
                 AATTTATGTAATA 
                 TATTACATAAATT 
               
               
                   
               
               
                 SRF_disc2 
                 GAGGGGCCGGC 
                 GCCGGCCCCTC 
               
               
                   
               
               
                 IRF_known7 
                 GAAAGTGAAACTGAA 
                 TTCAGTTTCACTTTC 
               
               
                   
               
               
                 PRDM16_V$EVI1_04_Transfac|RUNX1_5 
                 AGATAAGATAAGATA 
                 TATCTTATCTTATCT 
               
               
                   
               
               
                 STAT5B_V$STAT56_01_Transfac|STAT_known5 
                 AAATTCCAGGAAATC 
                 GATTTCCTGGAATTT 
               
               
                   
               
               
                 TP53_V$P53_01_Transfac|TP53_P53_f2_HocoMoco 
                 AGACATGCCCGGGCAT 
                 GGACATGCCCGGGCAT 
               
               
                   
                 GTCC 
                 GTCT 
               
               
                   
               
               
                 EGR3_GM12878_EGR1_HudsonAlpha_ChIP-seq 
                 CCCCCCCCCCGCCCCCG 
                 GTGCGGGGGCGGGGG 
               
               
                   
                 CAC 
                 GGGGG 
               
               
                   
               
               
                 IRF3_IRF3_f1_HocoMoco 
                 GGAAAGCGAAACTGAA 
                 TTTCAGTTTCGCTTTCC 
               
               
                   
                 A 
                   
               
               
                   
               
               
                 NFIL3_2 
                 ATGTTACATAA 
                 TTATGTAACAT 
               
               
                   
               
               
                 CUX1_V$CDPCR1_01_Transfac|CUX1_3 
                 AATCGATCGC 
                 GCGATCGATT 
               
               
                   
               
               
                 OVOL1_ovo_FlyReg_FBgn0003028_B1H 
                 AGTAACGG 
                 CCGTTACT 
               
               
                   
               
               
                 PPARA_V$PPARG_03_Transfac|PPARA_3 
                 AACTAGGGCAAAGGTC 
                 TGACCTTTGCCCTAGTT 
               
               
                   
                 A 
                   
               
               
                   
               
               
                 ZEB1_V$AREB6_02_Transfac|ZEB1_known2 
                 ATTCACCTGTAC 
                 GTACAGGTGAAT 
               
               
                   
               
               
                 VDR_pTH5509_PBM 
                 ATGAACC 
                 GGTTCAT 
               
               
                   
               
               
                 HNF4G_V$HNF4_01_Transfac 
                 ACAGGGTCAAAGGTCA 
                 TCGTGACCTTTGACCCT 
               
               
                   
                 CGA 
                 GT 
               
               
                   
               
               
                 RARG_RARA_S_SELEX|RARA_6 
                 AAAGGTCATGTGAGGTC 
                 TGACCTCACATGACCTTT 
               
               
                   
                 A 
                   
               
               
                   
               
               
                 FOXA2_FOXA2_f1_HocoMoco 
                 CTAAGTAAACAA 
                 TTGTTTACTTAG 
               
               
                   
               
               
                 ATF3_known10 
                 CTCTGACGTCA 
                 TGACGTCAGAG 
               
               
                   
               
               
                 MYPOP_pTH3456_PBM 
                 TGGCGCAAAA 
                 TTTTGCGCCA 
               
               
                   
               
               
                 TWIST2_MA0249.1_DNaseI|TWIST2_twi_FlyReg_FBgn000 
                 CAACATATGCGA 
                 TCGCATATGTTG 
               
               
                 3900_B1H 
                   
                   
               
               
                   
               
               
                 GBX2_MA0224.1_B1H|DLX1_DII_Cell_FBgn0000157_B1H| 
                 GTAATTA 
                 TAATTAC 
               
               
                 GBX2_Exex_Cell_FBgn0041156_B1H|DLX1_MA0187.1_B1 
                   
                   
               
               
                 H 
                   
                   
               
               
                   
               
               
                 IRX3_Irx3_2226_PBM 
                 ATTACATG 
                 CATGTAAT 
               
               
                   
               
               
                 PPARA_V$PPARG_02_Transfac|RXRA_known2 
                 AAGTAGGTCACCGTGAC 
                 AAGTAGGTCACGGTGA 
               
               
                   
                 CTACTT 
                 CCTACTT 
               
               
                   
               
               
                 NR2E1_NR2E1_1_SELEX|NR2E1_Nr2e1_1_SELEX|NR2E1_1 
                 AAAAGTCAA 
                 TTGACTTTT 
               
               
                 |NR2E1_3 
                   
                   
               
               
                   
               
               
                 HOXC5_Hoxb4_2627_PBM|HOXC5_Hoxb5_3122_PBM|HO 
                 GGTCATTAA 
                 TTAATGACC 
               
               
                 XC5_Hoxb3_1720_PBM|HOXC5_Hoxc4_3491_PBM|HOXC 
                   
                   
               
               
                 5_Hoxa3_2783_PBM 
                   
                   
               
               
                   
               
               
                 FOXA2_V$HNF36_01_Transfac 
                 TAAATAAACATTTCA 
                 TGAAATGTTTATTTA 
               
               
                   
               
               
                 AP1_known2 
                 GGTGACTCAGA 
                 TCTGAGTCACC 
               
               
                   
               
               
                 FEZF2_CG31670_SOLEXA_5_FBgn0031375_B1H 
                 CAAAAAGAGCAACCA 
                 TGGTTGCTCTTTTTG 
               
               
                   
               
               
                 ARNT2_pTH5111_PBM 
                 AAGCACGTGATT 
                 AATCACGTGCTT 
               
               
                   
               
               
                 MYBL2_MYBL2_3_SELEX|MYBL2_3 
                 ATAACCGTTAA 
                 TTAACGGTTAT 
               
               
                   
               
               
                 HNF4_disc3 
                 AGTCCAAAG 
                 CTTTGGACT 
               
               
                   
               
               
                 HOXC5_Hoxb6_3428_PBM 
                 GCCATTA 
                 TAATGGC 
               
               
                   
               
               
                 FOXD1_FOXA1_f1_HocoMoco|EP300_disc3|FOXA_known 
                 CAAAGTAAACA 
                 TGTTTACTTTG 
               
               
                 5 
                   
                   
               
               
                   
               
               
                 CREB3L2_CREB3L1_5_SELEX|CREB3L2_CREB3L1_3_SELEX| 
                 TGCCACGTGGCA 
                 TGCCACGTGGCA 
               
               
                 CREB3L2_Creb3l2_2_SELEX|CREB3L2_CREB3L1_2_SELEX|C 
                   
                   
               
               
                 REB3L1_2|CREB3L1_3|CREB3L2_2 
                   
                   
               
               
                   
               
               
                 E2F_disc2|EGR1_disc3 
                 GCGCATGCGC 
                 GCGCATGCGC 
               
               
                   
               
               
                 FOXD1_ECC-1_FOXA1_HudsonAlpha_ChIP-seq 
                 CCCTAAGTAAACAAA 
                 TTTGTTTACTTAGGG 
               
               
                   
               
               
                 TP53_1 
                 GGACATGCCCGGGCAT 
                 GGACATGCCCGGGCAT 
               
               
                   
                 GTCC 
                 GTCC 
               
               
                   
               
               
                 FOXD1_FOXC1_f1_HocoMoco 
                 CGTTGTTTACTTAAG 
                 CTTAAGTAAACAACG 
               
               
                   
               
               
                 PKNOX2_Mrg2_2302_PBM|PKNOX2_Mrg1_2246_PBM 
                 ACCTGTCAA 
                 TTGACAGGT 
               
               
                   
               
               
                 SCRT2_scrt_SOLEXA_2.5_2_FBgn0004880_B1H 
                 ACCACCTGTTGCA 
                 TGCAACAGGTGGT 
               
               
                   
               
               
                 MYBL1_MYB_f1_HocoMoco 
                 CAGTTGG 
                 CCAACTG 
               
               
                   
               
               
                 MEIS1_pTH5781_PBM 
                 ACCTGTCAT 
                 ATGACAGGT 
               
               
                   
               
               
                 TP73_P73_si_HocoMoco 
                 CAGACCTGCCCC 
                 GGGGCAGGTCTG 
               
               
                   
               
               
                 JUN_HepG2_JUND_HudsonAlpha_ChIP-seq 
                 GAGGATGAGTCAC 
                 GTGACTCATCCTC 
               
               
                   
               
            
           
         
       
     
     All references, patents and patent applications disclosed herein are incorporated by reference with respect to the subject matter for which each is cited, which in some cases may encompass the entirety of the document. 
     The indefinite articles “a” and “an,” as used herein in the specification and in the claims, unless clearly indicated to the contrary, should be understood to mean “at least one.” 
     It should also be understood that, unless clearly indicated to the contrary, in any methods claimed herein that include more than one step or act, the order of the steps or acts of the method is not necessarily limited to the order in which the steps or acts of the method are recited. 
     In the claims, as well as in the specification above, all transitional phrases such as “comprising,” “including,” “carrying,” “having,” “containing,” “involving,” “holding,” “composed of,” and the like are to be understood to be open-ended, i.e., to mean including but not limited to. Only the transitional phrases “consisting of” and “consisting essentially of” shall be closed or semi-closed transitional phrases, respectively, as set forth in the United States Patent Office Manual of Patent Examining Procedures, Section 2111.03.