Datasets:

anz2

/

nasa-osdr

like 0

OSD-1

6

['array', 'metadata', 'microarray']

{'zip': ['OSD-1_metadata_OSD-1-ISA.zip']}

OSD-1_metadata_OSD-1-ISA.zip

OSD-1/version-6/metadata/OSD-1_metadata_OSD-1-ISA.zip

['s_OSD-1.txt', 'i_Investigation.txt', 'a_OSD-1_transcription-profiling_dna-microarray.txt']

{'array': ['a_OSD-1_transcription-profiling_dna-microarray.txt'], 'microarray': ['a_OSD-1_transcription-profiling_dna-microarray.txt']}

s_OSD-1.txt

OSD-100

5

['design', 'metadata', 'rna-seq', 'rna_seq', 'wgbs']

{'zip': ['OSD-100_metadata_OSD-100-ISA.zip']}

OSD-100_metadata_OSD-100-ISA.zip

OSD-100/version-5/metadata/OSD-100_metadata_OSD-100-ISA.zip

['a_OSD-100_dna-methylation-profiling_whole-genome-bisulfite-sequencing.txt', 'a_OSD-100_transcription-profiling_rna-sequencing-(rna-seq).txt', 's_OSD-100.txt', 'i_Investigation.txt']

{'design': [], 'rna-seq': ['a_OSD-100_transcription-profiling_rna-sequencing-(rna-seq).txt'], 'rna_seq': [], 'wgbs': []}

s_OSD-100.txt

OSD-101

5

['epigenomics', 'epitranscriptomics', 'metadata', 'proteomics', 'rna_seq', 'sup', 'transcriptomics']

{'zip': ['GLDS-101_metadata_GLDS-101-ISA.zip']}

GLDS-101_metadata_GLDS-101-ISA.zip

OSD-101/version-5/metadata/GLDS-101_metadata_GLDS-101-ISA.zip

['a_rr1-biobanked_protein_expression_profiling_mass_spectrometry.txt', 'a_rr1-biobank-gst_transcription_profiling_RNA_Sequencing_(RNA-Seq).txt', 'a_rr1-biobanked_RNA_methylation_profiling_nucleotide_sequencing.txt', 's_BIOBANK.txt', 'a_biobank_DNA_methylation_profiling_nucleotide_sequencing.txt', 'i_Investigation.txt']

{'epigenomics': [], 'epitranscriptomics': [], 'proteomics': [], 'rna_seq': ['a_rr1-biobank-gst_transcription_profiling_RNA_Sequencing_(RNA-Seq).txt'], 'sup': [], 'transcriptomics': []}

s_BIOBANK.txt

OSD-102

5

['design', 'epigenomics', 'epitranscriptomics', 'metadata', 'proteomics', 'rna_seq', 'transcriptomics']

{'zip': ['OSD-102_metadata_OSD-102-ISA.zip']}

OSD-102_metadata_OSD-102-ISA.zip

OSD-102/version-5/metadata/OSD-102_metadata_OSD-102-ISA.zip

['a_OSD-102_dna-methylation-profiling_nucleotide-sequencing.txt', 'a_OSD-102_protein-expression-profiling_mass-spectrometry.txt', 'a_OSD-102_rna-methylation-profiling_nucleotide-sequencing.txt', 'a_OSD-102_transcription-profiling_rna-sequencing-(rna-seq).txt', 'i_Investigation.txt', 's_BIOBANK.txt']

{'design': [], 'epigenomics': [], 'epitranscriptomics': [], 'proteomics': [], 'rna_seq': [], 'transcriptomics': []}

s_BIOBANK.txt

OSD-103

5

['design', 'metadata', 'proteomics', 'rna-seq', 'rna_seq', 'wgbs', 'wtbs']

{'zip': ['OSD-103_metadata_OSD-103-ISA.zip']}

OSD-103_metadata_OSD-103-ISA.zip

OSD-103/version-5/metadata/OSD-103_metadata_OSD-103-ISA.zip

['a_OSD-103_dna-methylation-profiling_whole-genome-bisulfite-sequencing.txt', 's_OSD-103.txt', 'a_OSD-103_protein-expression-profiling_mass-spectrometry.txt', 'a_OSD-103_transcription-profiling_rna-sequencing-(rna-seq).txt', 'i_Investigation.txt', 'a_OSD-103_rna-methylation-profiling_whole-transcriptome-bisulfite-sequencing.txt']

{'design': [], 'proteomics': [], 'rna-seq': ['a_OSD-103_transcription-profiling_rna-sequencing-(rna-seq).txt'], 'rna_seq': [], 'wgbs': [], 'wtbs': []}

s_OSD-103.txt

OSD-104

4

['epigenomics', 'metadata', 'rna_seq', 'transcriptomics']

{'zip': ['GLDS-104_metadata_GLDS-104-ISA.zip'], 'pdf': ['GLDS-104_metadata_RR1ExpDesign.pdf']}

GLDS-104_metadata_GLDS-104-ISA.zip

OSD-104/version-4/metadata/GLDS-104_metadata_GLDS-104-ISA.zip

['s_BIOBANK.txt', 'a_biobank_DNA_methylation_profiling_nucleotide_sequencing.txt', 'i_Investigation.txt', 'a_rr1-biobank-sls_transcription_profiling_RNA_Sequencing_(RNA-Seq).txt']

{'epigenomics': [], 'rna_seq': ['a_rr1-biobank-sls_transcription_profiling_RNA_Sequencing_(RNA-Seq).txt'], 'transcriptomics': []}

s_BIOBANK.txt

OSD-105

4

['epigenomics', 'epitranscriptomics', 'metadata', 'proteomics', 'rna_seq', 'transcriptomics']

{'zip': ['GLDS-105_metadata_GLDS-105-ISA.zip'], 'pdf': ['GLDS-105_metadata_RR1ExpDesign.pdf']}

GLDS-105_metadata_GLDS-105-ISA.zip

OSD-105/version-4/metadata/GLDS-105_metadata_GLDS-105-ISA.zip

['a_rr1-biobanked_protein_expression_profiling_mass_spectrometry.txt', 'a_rr1-biobanked_RNA_methylation_profiling_nucleotide_sequencing.txt', 's_BIOBANK.txt', 'a_rr1-biobank-ta_transcription_profiling_RNA_Sequencing_(RNA-Seq).txt', 'a_biobank_DNA_methylation_profiling_nucleotide_sequencing.txt', 'i_Investigation.txt']

{'epigenomics': [], 'epitranscriptomics': [], 'proteomics': [], 'rna_seq': ['a_rr1-biobank-ta_transcription_profiling_RNA_Sequencing_(RNA-Seq).txt'], 'transcriptomics': []}

s_BIOBANK.txt

OSD-106

1

['metadata', 'transcriptomics']

{'zip': ['GLDS-106_metadata_GSE90166-ISA.zip']}

GLDS-106_metadata_GSE90166-ISA.zip

OSD-106/version-1/metadata/GLDS-106_metadata_GSE90166-ISA.zip

['a_GSE90166_Illumina_HiSeq_2500.fastq.gzip.txt', 'i_Investigation.txt', 's_GSE91066.txt']

{'transcriptomics': []}

s_GSE91066.txt

OSD-107

1

['metadata', 'transcriptomics']

{'zip': ['GLDS-107_metadata_E-GEOD-78980-ISA.zip']}

GLDS-107_metadata_E-GEOD-78980-ISA.zip

OSD-107/version-1/metadata/GLDS-107_metadata_E-GEOD-78980-ISA.zip

['a_E-GEOD-78980_GeneChip_assay.txt', 'i_E-GEOD-78980_investigation.txt', 's_E-GEOD-78980_study_samples.txt']

{'transcriptomics': []}

s_E-GEOD-78980_study_samples.txt

OSD-108

2

['metabolomics', 'metadata']

{'zip': ['GLDS-108_metadata_STS135_Liver_MET-ISA.zip']}

GLDS-108_metadata_STS135_Liver_MET-ISA.zip

OSD-108/version-2/metadata/GLDS-108_metadata_STS135_Liver_MET-ISA.zip

['a_sts-135_liver_metabolomics_metabolite_profiling_mass_spectrometry.txt', 's_Pecaut.txt', 'i_Investigation.txt']

{'metabolomics': ['a_sts-135_liver_metabolomics_metabolite_profiling_mass_spectrometry.txt']}

s_Pecaut.txt

OSD-109

4

['array', 'metadata', 'microarray']

{'zip': ['GLDS-109_metadata_E-GEOD-68874-ISA.zip']}

GLDS-109_metadata_E-GEOD-68874-ISA.zip

OSD-109/version-4/metadata/GLDS-109_metadata_E-GEOD-68874-ISA.zip

['s_E-GEOD-68874.txt', 'a_e-geod-68874_transcription_profiling_DNA_microarray.txt', 'i_Investigation.txt']

{'array': ['a_e-geod-68874_transcription_profiling_DNA_microarray.txt'], 'microarray': ['a_e-geod-68874_transcription_profiling_DNA_microarray.txt']}

s_E-GEOD-68874.txt

OSD-11

2

['metadata', 'microarray']

{'zip': ['OSD-11_metadata_GLDS-11-ISA.zip']}

OSD-11_metadata_GLDS-11-ISA.zip

OSD-11/version-2/metadata/OSD-11_metadata_GLDS-11-ISA.zip

['i_Investigation.txt', 's_OSD-11.txt', 'a_OSD-11_transcription-profiling_dna-microarray_sidney kimmel cancer center non-commercial.txt']

{'microarray': ['a_OSD-11_transcription-profiling_dna-microarray_sidney kimmel cancer center non-commercial.txt']}

s_OSD-11.txt

OSD-110

1

['2dDIGE', 'mass_spec', 'metadata']

{'zip': ['GLDS-110_metadata_PXD002096-ISA.zip']}

GLDS-110_metadata_PXD002096-ISA.zip

OSD-110/version-1/metadata/GLDS-110_metadata_PXD002096-ISA.zip

['PXD002096/a_2DIGE_Daphnia.txt', 'PXD002096/a_pxd002096_protein_identification_mass_spectrometry.txt', 'PXD002096/i_Investigation.txt', 'PXD002096/s_PXD002096.txt']

{'2dDIGE': [], 'mass_spec': ['PXD002096/a_pxd002096_protein_identification_mass_spectrometry.txt']}

PXD002096/s_PXD002096.txt

OSD-111

4

['array', 'metadata', 'microarray']

{'zip': ['GLDS-111_metadata_GSE80223-ISA.zip']}

GLDS-111_metadata_GSE80223-ISA.zip

OSD-111/version-4/metadata/GLDS-111_metadata_GSE80223-ISA.zip

['a_gse80223_transcription_profiling_DNA_microarray.txt', 's_GSE80223.txt', 'i_Investigation.txt']

{'array': ['a_gse80223_transcription_profiling_DNA_microarray.txt'], 'microarray': ['a_gse80223_transcription_profiling_DNA_microarray.txt']}

s_GSE80223.txt

OSD-112

1

['metadata', 'microarray']

{'zip': ['GLDS-112_metadata_GSE71770-ISA.zip']}

GLDS-112_metadata_GSE71770-ISA.zip

OSD-112/version-1/metadata/GLDS-112_metadata_GSE71770-ISA.zip

['GSE71770/a_gse71770_transcription_profiling_DNA_microarray.txt', 'GSE71770/i_Investigation.txt', 'GSE71770/s_GSE71770.txt']

{'microarray': ['GSE71770/a_gse71770_transcription_profiling_DNA_microarray.txt']}

GSE71770/s_GSE71770.txt

OSD-113

2

['array', 'metadata', 'microarray']

{'zip': ['OSD-113_metadata_OSD-113-ISA.zip']}

OSD-113_metadata_OSD-113-ISA.zip

OSD-113/version-2/metadata/OSD-113_metadata_OSD-113-ISA.zip

['GLDS-113-ISA.zip', 'a_OSD-113_transcription-profiling_dna-microarray.txt', 's_OSD-113.txt', 'i_Investigation.txt']

{'array': ['a_OSD-113_transcription-profiling_dna-microarray.txt'], 'microarray': ['a_OSD-113_transcription-profiling_dna-microarray.txt']}

s_OSD-113.txt

OSD-114

1

['metadata', 'microarray']

{'zip': ['GLDS-114_metadata_GSE93860-ISA.zip']}

GLDS-114_metadata_GSE93860-ISA.zip

OSD-114/version-1/metadata/GLDS-114_metadata_GSE93860-ISA.zip

['GSE93860/a_gse93860_transcription_profiling_DNA_microarray.txt', 'GSE93860/i_Investigation.txt', 'GSE93860/s_GSE93860.txt']

{'microarray': ['GSE93860/a_gse93860_transcription_profiling_DNA_microarray.txt']}

GSE93860/s_GSE93860.txt

OSD-115

1

['metadata', 'microarray']

{'zip': ['GLDS-115_metadata_E-GEOD-12647-ISA.zip']}

GLDS-115_metadata_E-GEOD-12647-ISA.zip

OSD-115/version-1/metadata/GLDS-115_metadata_E-GEOD-12647-ISA.zip

['E-GEOD-12647/a_e-geod-12647_transcription_profiling_DNA_microarray.txt', 'E-GEOD-12647/i_Investigation.txt', 'E-GEOD-12647/s_E-GEOD-12647.txt']

{'microarray': ['E-GEOD-12647/a_e-geod-12647_transcription_profiling_DNA_microarray.txt']}

E-GEOD-12647/s_E-GEOD-12647.txt

OSD-116

2

['metabolomics', 'metadata', 'microarray']

{'zip': ['GLDS-116_metadata_STS-135_Skin-ISA.zip']}

GLDS-116_metadata_STS-135_Skin-ISA.zip

OSD-116/version-2/metadata/GLDS-116_metadata_STS-135_Skin-ISA.zip

['s_STS-135_Skin.txt', 'a_sts-135_skin_transcription_profiling_DNA_microarray.txt', 'a_sts-135_skin_metabolite_profiling_mass_spectrometry.txt', 'i_Investigation.txt']

{'metabolomics': [], 'microarray': ['a_sts-135_skin_transcription_profiling_DNA_microarray.txt']}

s_STS-135_Skin.txt

OSD-117

6

['array', 'metadata', 'microarray']

{'zip': ['GLDS-117_metadata_E-GEOD-68875-ISA.zip']}

GLDS-117_metadata_E-GEOD-68875-ISA.zip

OSD-117/version-6/metadata/GLDS-117_metadata_E-GEOD-68875-ISA.zip

['s_E-GEOD-68875.txt', 'i_Investigation.txt', 'a_e-geod-68875_transcription_profiling_DNA_microarray.txt']

{'array': ['a_e-geod-68875_transcription_profiling_DNA_microarray.txt'], 'microarray': ['a_e-geod-68875_transcription_profiling_DNA_microarray.txt']}

s_E-GEOD-68875.txt

OSD-118

2

['mRNA_microarray', 'metadata', 'miRNA_microarray']

{'zip': ['GLDS-118_metadata_MICRO7-v1-ISA.zip']}

GLDS-118_metadata_MICRO7-v1-ISA.zip

OSD-118/version-2/metadata/GLDS-118_metadata_MICRO7-v1-ISA.zip

['a_micro_7_mrna_transcription_profiling_DNA_microarray.txt', 's_Micro 7_mRNA.txt', 'i_Investigation.txt', 'a_micro_7_mirna_transcription_profiling_DNA_microarray.txt']

{'mRNA_microarray': [], 'miRNA_microarray': []}

s_Micro 7_mRNA.txt

OSD-119

1

['metadata', 'sequencing']

{'zip': ['GLDS-119_metadata_Foster-ISA.zip']}

GLDS-119_metadata_Foster-ISA.zip

OSD-119/version-1/metadata/GLDS-119_metadata_Foster-ISA.zip

['Foster/a_foster_transcription_profiling_nucleotide_sequencing.txt', 'Foster/i_Investigation.txt', 'Foster/s_Foster.txt']

{'sequencing': ['Foster/a_foster_transcription_profiling_nucleotide_sequencing.txt']}

Foster/s_Foster.txt

OSD-12

1

['metadata', 'microarray']

{'zip': ['GLDS-12_metadata_E-GEOD-4136-ISA.zip'], 'adf.txt': ['GLDS-12_metadata_A-AFFY-47.adf.txt']}

GLDS-12_metadata_E-GEOD-4136-ISA.zip

OSD-12/version-1/metadata/GLDS-12_metadata_E-GEOD-4136-ISA.zip

['E-GEOD-4136/a_E-GEOD-4136_GeneChip_assay.txt', 'E-GEOD-4136/i_E-GEOD-4136_investigation.txt', 'E-GEOD-4136/s_E-GEOD-4136_study_samples.txt']

{'microarray': []}

E-GEOD-4136/s_E-GEOD-4136_study_samples.txt

OSD-120

17

['metadata', 'morphometric-photography', 'rna-seq', 'rna_seq', 'sup']

{'zip': ['OSD-120_metadata_OSD-120-ISA.zip']}

OSD-120_metadata_OSD-120-ISA.zip

OSD-120/version-17/metadata/OSD-120_metadata_OSD-120-ISA.zip

['s_OSD-120.txt', 'a_OSD-120_transcription-profiling_rna-sequencing-(rna-seq)_illumina.txt', 'a_OSD-120_image-analysis_photography_cara.txt', 'i_Investigation.txt']

{'morphometric-photography': [], 'rna-seq': ['a_OSD-120_transcription-profiling_rna-sequencing-(rna-seq)_illumina.txt'], 'rna_seq': [], 'sup': []}

s_OSD-120.txt

OSD-121

7

['array', 'metadata', 'microarray']

{'zip': ['GLDS-121_metadata_GLDS-121-ISA.zip']}

GLDS-121_metadata_GLDS-121-ISA.zip

OSD-121/version-7/metadata/GLDS-121_metadata_GLDS-121-ISA.zip

['s_BRIC-16.txt', 'a_bric-16_transcription_profiling_DNA_microarray.txt', 'i_Investigation.txt']

{'array': ['a_bric-16_transcription_profiling_DNA_microarray.txt'], 'microarray': ['a_bric-16_transcription_profiling_DNA_microarray.txt']}

s_BRIC-16.txt

OSD-122

1

['metadata', 'proteomics']

{'zip': ['GLDS-122_metadata_Bowles_ISA.zip']}

GLDS-122_metadata_Bowles_ISA.zip

OSD-122/version-1/metadata/GLDS-122_metadata_Bowles_ISA.zip

['Bowles/a_bowles_protein_expression_profiling_mass_spectrometry.txt', 'Bowles/i_Investigation.txt', 'Bowles/s_Bowles.txt']

{'proteomics': []}

Bowles/s_Bowles.txt

OSD-123

2

['array', 'metadata', 'microarray']

{'zip': ['GLDS-123_metadata_GLDS-123-ISA.zip']}

GLDS-123_metadata_GLDS-123-ISA.zip

OSD-123/version-2/metadata/GLDS-123_metadata_GLDS-123-ISA.zip

['s_E-MTAB-3289_study_samples.txt', 'a_e-mtab-3289_transcription_profiling_DNA_microarray.txt', 'i_investigation.txt']

{'array': ['a_e-mtab-3289_transcription_profiling_DNA_microarray.txt'], 'microarray': ['a_e-mtab-3289_transcription_profiling_DNA_microarray.txt']}

s_E-MTAB-3289_study_samples.txt

OSD-124

5

['array', 'metadata', 'microarray']

{'zip': ['GLDS-124_metadata_E-GEOD-57298-ISA.zip']}

GLDS-124_metadata_E-GEOD-57298-ISA.zip

OSD-124/version-5/metadata/GLDS-124_metadata_E-GEOD-57298-ISA.zip

['s_E-GEOD-57298_study_samples.txt', 'a_E-GEOD-57298_GeneChip_assay.txt', 'i_E-GEOD-57298_investigation.txt']

{'array': [], 'microarray': []}

s_E-GEOD-57298_study_samples.txt

OSD-125

2

['array', 'metadata', 'microarray']

{'zip': ['GLDS-125_metadata_GSE69271-ISA.zip']}

GLDS-125_metadata_GSE69271-ISA.zip

OSD-125/version-2/metadata/GLDS-125_metadata_GSE69271-ISA.zip

['s_GSE69271.txt', 'a_GSE69271_transcription_profiling_DNA_microarray.txt', 'i_Investigation.txt']

{'array': ['a_GSE69271_transcription_profiling_DNA_microarray.txt'], 'microarray': ['a_GSE69271_transcription_profiling_DNA_microarray.txt']}

s_GSE69271.txt

OSD-126

4

['Amplicon', 'GAmplicon', 'metadata']

{'zip': ['GLDS-126_metadata_GLDS-126-ISA.zip']}

GLDS-126_metadata_GLDS-126-ISA.zip

OSD-126/version-4/metadata/GLDS-126_metadata_GLDS-126-ISA.zip

['s_PRJEB14961.txt', 'i_Investigation.txt', 'a_prjeb14961_metagenome_profiling_nucleotide_sequencing-1.txt']

{'Amplicon': [], 'GAmplicon': []}

s_PRJEB14961.txt

OSD-127

7

['metadata', 'rna_seq', 'transcriptomics']

{'zip': ['GLDS-127_metadata_GLDS-127-ISA.zip']}

GLDS-127_metadata_GLDS-127-ISA.zip

OSD-127/version-7/metadata/GLDS-127_metadata_GLDS-127-ISA.zip

['s_E-GEOD-84582_study_samples.txt', 'a_e-geod-84582_transcription_profiling_RNA_Sequencing_(RNA-Seq).txt', 'i_investigation.txt']

{'rna_seq': ['a_e-geod-84582_transcription_profiling_RNA_Sequencing_(RNA-Seq).txt'], 'transcriptomics': []}

s_E-GEOD-84582_study_samples.txt

OSD-128

1

['metadata', 'microarray']

{'zip': ['GLDS-128_metadata_GSE20120-ISA.zip']}

GLDS-128_metadata_GSE20120-ISA.zip

OSD-128/version-1/metadata/GLDS-128_metadata_GSE20120-ISA.zip

['GSE20120/a_gse20120_transcription_profiling_DNA_microarray.txt', 'GSE20120/i_Investigation.txt', 'GSE20120/s_GSE20120.txt']

{'microarray': ['GSE20120/a_gse20120_transcription_profiling_DNA_microarray.txt']}

GSE20120/s_GSE20120.txt

OSD-129

1

['metadata', 'microarray']

{'zip': ['GLDS-129_metadata_GSE20173-ISA.zip']}

GLDS-129_metadata_GSE20173-ISA.zip

OSD-129/version-1/metadata/GLDS-129_metadata_GSE20173-ISA.zip

['GSE20173/a_gse20173_transcription_profiling_DNA_microarray.txt', 'GSE20173/i_Investigation.txt', 'GSE20173/s_GSE20173.txt']

{'microarray': ['GSE20173/a_gse20173_transcription_profiling_DNA_microarray.txt']}

GSE20173/s_GSE20173.txt

OSD-13

6

['array', 'metadata', 'microarray']

{'zip': ['GLDS-13_metadata_E-GEOD-38836-ISA.zip']}

GLDS-13_metadata_E-GEOD-38836-ISA.zip

OSD-13/version-6/metadata/GLDS-13_metadata_E-GEOD-38836-ISA.zip

['s_E-GEOD-38836_study_samples.txt', 'i_E-GEOD-38836_investigation.txt', 'a_E-GEOD-38836_GeneChip_assay.txt']

{'array': [], 'microarray': []}

s_E-GEOD-38836_study_samples.txt

OSD-130

2

['metadata', 'microarray']

{'zip': ['GLDS-130_metadata_GSE95050-ISA.zip']}

GLDS-130_metadata_GSE95050-ISA.zip

OSD-130/version-2/metadata/GLDS-130_metadata_GSE95050-ISA.zip

['s_GSE95050.txt', 'a_gse95050_transcription_profiling_DNA_microarray.txt', 'i_Investigation.txt']

{'microarray': ['a_gse95050_transcription_profiling_DNA_microarray.txt']}

s_GSE95050.txt

OSD-131

1

['metadata', 'microarray']

{'zip': ['GLDS-131_metadata_GSE45609-ISA.zip']}

GLDS-131_metadata_GSE45609-ISA.zip

OSD-131/version-1/metadata/GLDS-131_metadata_GSE45609-ISA.zip

['GSE45609/a_gse45609_transcription_profiling_DNA_microarray.txt', 'GSE45609/i_Investigation.txt', 'GSE45609/s_GSE45609.txt']

{'microarray': ['GSE45609/a_gse45609_transcription_profiling_DNA_microarray.txt']}

GSE45609/s_GSE45609.txt

OSD-132

1

['metadata', 'wgs']

{'zip': ['GLDS-132_metadata_PRJNA355122-ISA.zip']}

GLDS-132_metadata_PRJNA355122-ISA.zip

OSD-132/version-1/metadata/GLDS-132_metadata_PRJNA355122-ISA.zip

['a_prjna355122_genome_sequencing_nucleotide_sequencing.txt', 'i_Investigation.txt', 's_PRJNA355122.txt']

{'wgs': []}

s_PRJNA355122.txt

OSD-133

1

['metadata', 'sequencing']

{'zip': ['GLDS-133_metadata_PRJDB5292_ISA.zip']}

GLDS-133_metadata_PRJDB5292_ISA.zip

OSD-133/version-1/metadata/GLDS-133_metadata_PRJDB5292_ISA.zip

['PRJDB5292/a_prjdb5292_transcription_profiling_nucleotide_sequencing.txt', 'PRJDB5292/i_Investigation.txt', 'PRJDB5292/s_PRJDB5292.txt']

{'sequencing': ['PRJDB5292/a_prjdb5292_transcription_profiling_nucleotide_sequencing.txt']}

PRJDB5292/s_PRJDB5292.txt

OSD-134

2

['metadata', 'microarray']

{'zip': ['OSD-134_metadata_OSD-134-ISA.zip']}

OSD-134_metadata_OSD-134-ISA.zip

OSD-134/version-2/metadata/OSD-134_metadata_OSD-134-ISA.zip

['i_Investigation.txt', 's_OSD-134.txt', 'a_OSD-134_transcription-profiling_dna-microarray_affymetrix.txt']

{'microarray': ['a_OSD-134_transcription-profiling_dna-microarray_affymetrix.txt']}

s_OSD-134.txt

OSD-135

3

['array', 'metadata', 'microarray']

{'zip': ['GLDS-135_metadata_GSE94381-ISA.zip']}

GLDS-135_metadata_GSE94381-ISA.zip

OSD-135/version-3/metadata/GLDS-135_metadata_GSE94381-ISA.zip

['a_gse94381_transcription_profiling_DNA_microarray.txt', 'i_Investigation.txt', 's_GSE94381.txt']

{'array': ['a_gse94381_transcription_profiling_DNA_microarray.txt'], 'microarray': ['a_gse94381_transcription_profiling_DNA_microarray.txt']}

s_GSE94381.txt

OSD-136

4

['array', 'metadata', 'microarray']

{'zip': ['GLDS-136_metadata_GSE87868-ISA.zip']}

GLDS-136_metadata_GSE87868-ISA.zip

OSD-136/version-4/metadata/GLDS-136_metadata_GSE87868-ISA.zip

['i_GLDS-136_microarray_metadata.txt', 'a_GLDS-136_microarray_metadata.txt', 's_GLDS-136_microarray_metadata.txt']

{'array': ['i_GLDS-136_microarray_metadata.txt', 'a_GLDS-136_microarray_metadata.txt', 's_GLDS-136_microarray_metadata.txt'], 'microarray': ['i_GLDS-136_microarray_metadata.txt', 'a_GLDS-136_microarray_metadata.txt', 's_GLDS-136_microarray_metadata.txt']}

s_GLDS-136_microarray_metadata.txt

OSD-137

8

['Histology', 'metadata', 'proteomics', 'rna-seq', 'rna_seq', 'wgbs']

{'zip': ['OSD-137_metadata_OSD-137-ISA.zip']}

OSD-137_metadata_OSD-137-ISA.zip

OSD-137/version-8/metadata/OSD-137_metadata_OSD-137-ISA.zip

['a_OSD-137_protein-expression-profiling_mass-spectrometry.txt', 's_OSD-137.txt', 'a_OSD-137_transcription-profiling_rna-sequencing-(rna-seq).txt', 'i_Investigation.txt', 'a_OSD-137_dna-methylation-profiling_whole-genome-bisulfite-sequencing_illumina.txt', 'a_OSD-137_molecular-cellular-imaging_microscopy_pannoramic scan (3d histech).txt']

{'Histology': [], 'proteomics': [], 'rna-seq': ['a_OSD-137_transcription-profiling_rna-sequencing-(rna-seq).txt'], 'rna_seq': [], 'wgbs': []}

s_OSD-137.txt

OSD-138

8

['metabolomics', 'metadata', 'proteomics', 'rna_seq', 'transcriptomics']

{'zip': ['GLDS-138_metadata_BRIC23_Bacillus-ISA.zip']}

GLDS-138_metadata_BRIC23_Bacillus-ISA.zip

OSD-138/version-8/metadata/GLDS-138_metadata_BRIC23_Bacillus-ISA.zip

['i_Investigation.txt', 'a_bric-23_metabolite_profiling_mass_spectrometry-1.txt', 'a_bric-23_transcription_profiling_RNA_Sequencing_(RNA-Seq).txt', 'a_bric-23_metabolite_profiling_mass_spectrometry.txt', 'a_bric-23_protein_expression_profiling_mass_spectrometry.txt', 's_BRIC23.txt']

{'metabolomics': [], 'proteomics': [], 'rna_seq': ['a_bric-23_transcription_profiling_RNA_Sequencing_(RNA-Seq).txt'], 'transcriptomics': []}

s_BRIC23.txt

OSD-139

1

['metadata', 'proteomics']

{'zip': ['GLDS-139_metadata_PXD005035-ISA.zip']}

GLDS-139_metadata_PXD005035-ISA.zip

OSD-139/version-1/metadata/GLDS-139_metadata_PXD005035-ISA.zip

['a_protein_expression_profiling.txt', 's_PXD005035.txt', 'i_Investigation.txt']

{'proteomics': []}

s_PXD005035.txt

OSD-14

3

['array', 'metadata', 'microarray']

{'zip': ['GLDS-14_metadata_E-GEOD-16970-ISA.zip']}

GLDS-14_metadata_E-GEOD-16970-ISA.zip

OSD-14/version-3/metadata/GLDS-14_metadata_E-GEOD-16970-ISA.zip

['i_E-GEOD-16970_investigation.txt', 'a_e-geod-16970_transcription_profiling_DNA_microarray.txt', 's_E-GEOD-16970_study_samples.txt']

{'array': ['a_e-geod-16970_transcription_profiling_DNA_microarray.txt'], 'microarray': ['a_e-geod-16970_transcription_profiling_DNA_microarray.txt']}

s_E-GEOD-16970_study_samples.txt

OSD-140

1

['epigenomics', 'metadata']

{'zip': ['GLDS-140_metadata_E-GEOD-64950-ISA.zip']}

GLDS-140_metadata_E-GEOD-64950-ISA.zip

OSD-140/version-1/metadata/GLDS-140_metadata_E-GEOD-64950-ISA.zip

['a_E-GEOD-64950_Me-Chip_assay.txt', 'i_E-GEOD-64950_investigation.txt', 's_E-GEOD-64950_study_samples.txt']

{'epigenomics': []}

s_E-GEOD-64950_study_samples.txt

OSD-141

7

['metadata', 'rna_seq', 'transcriptomics']

{'zip': ['GLDS-141_metadata_GLDS-141-ISA.zip']}

GLDS-141_metadata_GLDS-141-ISA.zip

OSD-141/version-7/metadata/GLDS-141_metadata_GLDS-141-ISA.zip

['s_Chapes-0817.txt', 'a_chapes-0817_transcription_profiling_RNA_Sequencing_(RNA-Seq).txt', 'i_Investigation.txt']

{'rna_seq': ['a_chapes-0817_transcription_profiling_RNA_Sequencing_(RNA-Seq).txt'], 'transcriptomics': []}

s_Chapes-0817.txt

OSD-144

2

['metadata', 'microarray']

{'zip': ['GLDS-144_metadata_E-GEOD-60473-ISA.zip']}

GLDS-144_metadata_E-GEOD-60473-ISA.zip

OSD-144/version-2/metadata/GLDS-144_metadata_E-GEOD-60473-ISA.zip

['s_E-GEOD-60473.txt', 'a_e-geod-60473_transcription_profiling_DNA_microarray.txt', 'i_Investigation.txt']

{'microarray': ['a_e-geod-60473_transcription_profiling_DNA_microarray.txt']}

s_E-GEOD-60473.txt

OSD-145

2

['metabolomics', 'metadata', 'proteomics', 'rnaseq']

{'zip': ['GLDS-145_metadata_BRIC-23_SA-ISA.zip']}

GLDS-145_metadata_BRIC-23_SA-ISA.zip

OSD-145/version-2/metadata/GLDS-145_metadata_BRIC-23_SA-ISA.zip

['a_bric-23_transcription_profiling_RNA_Sequencing_(RNA-Seq).txt', 's_BRIC23.txt', 'a_bric-23_protein_expression_profiling_mass_spectrometry.txt', 'a_bric-23_metabolite_profiling_mass_spectrometry-1.txt', 'a_bric-23_metabolite_profiling_mass_spectrometry.txt', 'i_Investigation.txt']

{'metabolomics': [], 'proteomics': [], 'rnaseq': []}

s_BRIC23.txt

OSD-146

4

['Amplicon', 'GAmplicon', 'metadata']

{'zip': ['GLDS-146_metadata_PRJNA368790-ISA.zip']}

GLDS-146_metadata_PRJNA368790-ISA.zip

OSD-146/version-4/metadata/GLDS-146_metadata_PRJNA368790-ISA.zip

['s_PRJNA368790.txt', 'i_Investigation.txt', 'a_prjna368790_metagenome_profiling_nucleotide_sequencing.txt']

{'Amplicon': [], 'GAmplicon': []}

s_PRJNA368790.txt

OSD-147

7

['array', 'metadata', 'microarray']

{'zip': ['OSD-147_metadata_GLDS-147-ISA.zip']}

OSD-147_metadata_GLDS-147-ISA.zip

OSD-147/version-7/metadata/OSD-147_metadata_GLDS-147-ISA.zip

['a_OSD-147_transcription-profiling_dna-microarray_Affymetrix.txt', 's_OSD-147.txt', 'i_Investigation.txt']

{'array': ['a_OSD-147_transcription-profiling_dna-microarray_Affymetrix.txt'], 'microarray': ['a_OSD-147_transcription-profiling_dna-microarray_Affymetrix.txt']}

s_OSD-147.txt

OSD-148

2

['metadata', 'micoarray']

{'zip': ['GLDS-148_metadata_E-GEOD-42233-v1-ISA.zip']}

GLDS-148_metadata_E-GEOD-42233-v1-ISA.zip

OSD-148/version-2/metadata/GLDS-148_metadata_E-GEOD-42233-v1-ISA.zip

['i_E-GEOD-42233_investigation.txt', 's_E-GEOD-42233_study_samples.txt', 'a_E-GEOD-42233_GeneChip_assay.txt']

{'micoarray': []}

s_E-GEOD-42233_study_samples.txt

OSD-149

2

['metadata', 'micoarray']

{'zip': ['GLDS-149_metadata_E-GEOD-27520-v1-ISA.zip']}

GLDS-149_metadata_E-GEOD-27520-v1-ISA.zip

OSD-149/version-2/metadata/GLDS-149_metadata_E-GEOD-27520-v1-ISA.zip

['s_E-GEOD-27520_study_samples.txt', 'i_E-GEOD-27520_investigation.txt', 'a_E-GEOD-27520_GeneChip_assay.txt']

{'micoarray': []}

s_E-GEOD-27520_study_samples.txt

OSD-15

2

['array', 'metadata', 'microarray']

{'zip': ['GLDS-15_metadata_E-GEOD-22684-ISA.zip']}

GLDS-15_metadata_E-GEOD-22684-ISA.zip

OSD-15/version-2/metadata/GLDS-15_metadata_E-GEOD-22684-ISA.zip

['a_e-geod-22684_transcription_profiling_DNA_microarray.txt', 'i_E-GEOD-22684_investigation.txt', 's_E-GEOD-22684_study_samples.txt']

{'array': ['a_e-geod-22684_transcription_profiling_DNA_microarray.txt'], 'microarray': ['a_e-geod-22684_transcription_profiling_DNA_microarray.txt']}

s_E-GEOD-22684_study_samples.txt

OSD-151

2

['metadata', 'micoarray']

{'zip': ['GLDS-151_metadata_E-GEOD-23803-v1-ISA.zip']}

GLDS-151_metadata_E-GEOD-23803-v1-ISA.zip

OSD-151/version-2/metadata/GLDS-151_metadata_E-GEOD-23803-v1-ISA.zip

['a_E-GEOD-23803_GeneChip_assay.txt', 'i_E-GEOD-23803_investigation.txt', 's_E-GEOD-23803_study_samples.txt']

{'micoarray': []}

s_E-GEOD-23803_study_samples.txt

OSD-152

3

['array', 'metadata', 'microarray']

{'zip': ['OSD-152_metadata_OSD-152-ISA.zip']}

OSD-152_metadata_OSD-152-ISA.zip

OSD-152/version-3/metadata/OSD-152_metadata_OSD-152-ISA.zip

['s_OSD-152.txt', 'a_OSD-152_transcription-profiling_dna-microarray.txt', 'i_Investigation.txt']

{'array': ['a_OSD-152_transcription-profiling_dna-microarray.txt'], 'microarray': ['a_OSD-152_transcription-profiling_dna-microarray.txt']}

s_OSD-152.txt

OSD-153

6

['array', 'metadata', 'microarray']

{'zip': ['GLDS-153_metadata_E-GEOD-18216-ISA.zip']}

GLDS-153_metadata_E-GEOD-18216-ISA.zip

OSD-153/version-6/metadata/GLDS-153_metadata_E-GEOD-18216-ISA.zip

['i_Investigation.txt', 's_E-GEOD-18216_study_samples.txt', 'a_e-geod-18216_transcription_profiling_DNA_microarray.txt']

{'array': ['a_e-geod-18216_transcription_profiling_DNA_microarray.txt'], 'microarray': ['a_e-geod-18216_transcription_profiling_DNA_microarray.txt']}

s_E-GEOD-18216_study_samples.txt

OSD-154

3

['array', 'metadata', 'micoarray']

{'zip': ['GLDS-154_metadata_E-GEOD-22639-ISA.zip']}

GLDS-154_metadata_E-GEOD-22639-ISA.zip

OSD-154/version-3/metadata/GLDS-154_metadata_E-GEOD-22639-ISA.zip

['s_E-GEOD-22639_study_samples.txt', 'a_E-GEOD-22639_GeneChip_assay.txt', 'i_E-GEOD-22639_investigation.txt']

{'array': [], 'micoarray': []}

s_E-GEOD-22639_study_samples.txt

OSD-155

2

['metadata', 'micoarray']

{'zip': ['GLDS-155_metadata_E-GEOD-23515-v1-ISA.zip']}

GLDS-155_metadata_E-GEOD-23515-v1-ISA.zip

OSD-155/version-2/metadata/GLDS-155_metadata_E-GEOD-23515-v1-ISA.zip

['s_E-GEOD-23515_study_samples.txt', 'i_E-GEOD-23515_investigation.txt', 'a_E-GEOD-23515_GeneChip_assay.txt']

{'micoarray': []}

s_E-GEOD-23515_study_samples.txt

OSD-156

1

['metadata', 'micoarray']

{'zip': ['GLDS-156_metadata_E-GEOD-33172-ISA.zip']}

GLDS-156_metadata_E-GEOD-33172-ISA.zip

OSD-156/version-1/metadata/GLDS-156_metadata_E-GEOD-33172-ISA.zip

['E-GEOD-33172/s_E-GEOD-33172_study_samples.txt', 'E-GEOD-33172/a_E-GEOD-33172_GeneChip_assay.txt', 'E-GEOD-33172/i_E-GEOD-33172_investigation.txt']

{'micoarray': []}

E-GEOD-33172/s_E-GEOD-33172_study_samples.txt

OSD-157

2

['metadata', 'micoarray']

{'zip': ['GLDS-157_metadata_E-GEOD-44201-v1-ISA.zip']}

GLDS-157_metadata_E-GEOD-44201-v1-ISA.zip

OSD-157/version-2/metadata/GLDS-157_metadata_E-GEOD-44201-v1-ISA.zip

['s_E-GEOD-44201_study_samples.txt', 'a_E-GEOD-44201_GeneChip_assay.txt', 'i_E-GEOD-44201_investigation.txt']

{'micoarray': []}

s_E-GEOD-44201_study_samples.txt

OSD-158

1

['metadata', 'micoarray']

{'zip': ['GLDS-158_metadata_E-GEOD-57196-ISA.zip']}

GLDS-158_metadata_E-GEOD-57196-ISA.zip

OSD-158/version-1/metadata/GLDS-158_metadata_E-GEOD-57196-ISA.zip

['E-GEOD-57196/s_E-GEOD-57196_study_samples.txt', 'E-GEOD-57196/i_E-GEOD-57196_investigation.txt', 'E-GEOD-57196/a_E-GEOD-57196_GeneChip_assay.txt']

{'micoarray': []}

E-GEOD-57196/s_E-GEOD-57196_study_samples.txt

OSD-159

1

['metadata', 'micoarray']

{'zip': ['GLDS-159_metadata_E-GEOD-52690-ISA.zip']}

GLDS-159_metadata_E-GEOD-52690-ISA.zip

OSD-159/version-1/metadata/GLDS-159_metadata_E-GEOD-52690-ISA.zip

['E-GEOD-52690/s_E-GEOD-52690_study_samples.txt', 'E-GEOD-52690/a_E-GEOD-52690_GeneChip_assay.txt', 'E-GEOD-52690/i_E-GEOD-52690_investigation.txt']

{'micoarray': []}

E-GEOD-52690/s_E-GEOD-52690_study_samples.txt

OSD-16

1

['metadata', 'proteome']

{'zip': ['GLDS-16_metadata_PXD001179-ISA.zip']}

GLDS-16_metadata_PXD001179-ISA.zip

OSD-16/version-1/metadata/GLDS-16_metadata_PXD001179-ISA.zip

['PXD001179/a_PXD001179.txt', 'PXD001179/i_Investigation.txt', 'PXD001179/s_PXD001179.txt']

{'proteome': []}

PXD001179/s_PXD001179.txt

OSD-160

4

['array', 'metadata', 'micoarray']

{'zip': ['GLDS-160_metadata_E-GEOD-61208-ISA.zip']}

GLDS-160_metadata_E-GEOD-61208-ISA.zip

OSD-160/version-4/metadata/GLDS-160_metadata_E-GEOD-61208-ISA.zip

['a_E-GEOD-61208_GeneChip_assay.txt', 'i_E-GEOD-61208_investigation.txt', 's_E-GEOD-61208_study_samples.txt']

{'array': [], 'micoarray': []}

s_E-GEOD-61208_study_samples.txt

OSD-161

7

['epigenomics', 'metadata', 'proteomics', 'rna-seq', 'rna_seq']

{'zip': ['OSD-161_metadata_GLDS-161-ISA.zip']}

OSD-161_metadata_GLDS-161-ISA.zip

OSD-161/version-7/metadata/OSD-161_metadata_GLDS-161-ISA.zip

['a_rr3_adr_protein_expression_profiling_mass_spectrometry.txt', 'a_rr3-adr_transcription_profiling_RNA_Sequencing_(RNA-Seq).txt', 'a_rr3_adr_DNA_methylation_profiling_nucleotide_sequencing.txt', 'i_Investigation.txt', 's_RR3_adr.txt']

{'epigenomics': [], 'proteomics': [], 'rna-seq': ['a_rr3-adr_transcription_profiling_RNA_Sequencing_(RNA-Seq).txt'], 'rna_seq': ['a_rr3-adr_transcription_profiling_RNA_Sequencing_(RNA-Seq).txt']}

s_RR3_adr.txt

OSD-162

7

['metadata', 'proteomics', 'rna-seq', 'rna_seq']

{'zip': ['OSD-162_metadata_OSD-162-ISA.zip']}

OSD-162_metadata_OSD-162-ISA.zip

OSD-162/version-7/metadata/OSD-162_metadata_OSD-162-ISA.zip

['a_OSD-162_protein-expression-profiling_mass-spectrometry.txt', 'a_OSD-162_transcription-profiling_rna-sequencing-(rna-seq)_illumina.txt', 'i_Investigation.txt', 's_OSD-162.txt']

{'proteomics': [], 'rna-seq': ['a_OSD-162_transcription-profiling_rna-sequencing-(rna-seq)_illumina.txt'], 'rna_seq': []}

s_OSD-162.txt

OSD-163

7

['epigenomics', 'metadata', 'proteomics', 'rna_seq', 'transcriptomics']

{'zip': ['OSD-163_metadata_GLDS-163-ISA.zip']}

OSD-163_metadata_GLDS-163-ISA.zip

OSD-163/version-7/metadata/OSD-163_metadata_GLDS-163-ISA.zip

['a_rr3_kdn_DNA_methylation_profiling_nucleotide_sequencing.txt', 'a_rr3-kdn_transcription_profiling_RNA_Sequencing_(RNA-Seq).txt', 'a_rr3_kdn_protein_expression_profiling_mass_spectrometry.txt', 'i_Investigation.txt', 's_RR3_kdn.txt']

{'epigenomics': [], 'proteomics': [], 'rna_seq': ['a_rr3-kdn_transcription_profiling_RNA_Sequencing_(RNA-Seq).txt'], 'transcriptomics': []}

s_RR3_kdn.txt

OSD-164

7

['metadata', 'rna_seq', 'transcriptomics']

{'zip': ['GLDS-164_metadata_GLDS-164-ISA.zip']}

GLDS-164_metadata_GLDS-164-ISA.zip

OSD-164/version-7/metadata/GLDS-164_metadata_GLDS-164-ISA.zip

['a_RNA_Seq.txt', 's_Chapes-0118.txt', 'i_Investigation1.txt']

{'rna_seq': ['a_RNA_Seq.txt'], 'transcriptomics': []}

s_Chapes-0118.txt

OSD-165

1

['metadata', 'miRNA_microarray']

{'zip': ['GLDS-165_metadata_GSE90823-ISA.zip']}

GLDS-165_metadata_GSE90823-ISA.zip

OSD-165/version-1/metadata/GLDS-165_metadata_GSE90823-ISA.zip

['a_gse90823_transcription_profiling_DNA_microarray.txt', 's_GSE90823.txt', 'i_Investigation.txt']

{'miRNA_microarray': []}

s_GSE90823.txt

OSD-166

1

['metadata', 'miRNA_microarray']

{'zip': ['GLDS-166_metadata_GSE90872-ISA.zip']}

GLDS-166_metadata_GSE90872-ISA.zip

OSD-166/version-1/metadata/GLDS-166_metadata_GSE90872-ISA.zip

['a_gse90872_transcription_profiling_DNA_microarray.txt', 'i_Investigation.txt', 's_GSE90872.txt']

{'miRNA_microarray': []}

s_GSE90872.txt

OSD-167

2

['metadata', 'microarray']

{'zip': ['GLDS-167_metadata_GLDS-167-ISA.zip']}

GLDS-167_metadata_GLDS-167-ISA.zip

OSD-167/version-2/metadata/GLDS-167_metadata_GLDS-167-ISA.zip

['s_GSE90786.txt', 'i_Investigation.txt', 'a_gse90786_transcription_profiling_DNA_microarray.txt']

{'microarray': ['a_gse90786_transcription_profiling_DNA_microarray.txt']}

s_GSE90786.txt

OSD-168

10

['metadata', 'rna_seq', 'transcriptomics']

{'zip': ['GLDS-168_metadata_GLDS-168-ISA.zip']}

GLDS-168_metadata_GLDS-168-ISA.zip

OSD-168/version-10/metadata/GLDS-168_metadata_GLDS-168-ISA.zip

['a_nist-liver_transcription_profiling_RNA_Sequencing_(RNA-Seq).txt', 's_NIST-Spaceflight.txt', 'i_Investigation.txt']

{'rna_seq': ['a_nist-liver_transcription_profiling_RNA_Sequencing_(RNA-Seq).txt'], 'transcriptomics': []}

s_NIST-Spaceflight.txt

OSD-17

3

['array', 'metadata', 'microarray']

{'zip': ['GLDS-17_metadata_E-MTAB-1009-ISA.zip']}

GLDS-17_metadata_E-MTAB-1009-ISA.zip

OSD-17/version-3/metadata/GLDS-17_metadata_E-MTAB-1009-ISA.zip

['a_E-MTAB-1009_GeneChip_assay.txt', 'i_E-MTAB-1009_investigation.txt', 's_E-MTAB-1009_study_samples.txt']

{'array': [], 'microarray': []}

s_E-MTAB-1009_study_samples.txt

OSD-170

5

['Amplicon', 'GAmplicon', 'metadata']

{'zip': ['GLDS-170_metadata_DSmith_SIF-ISA.zip']}

GLDS-170_metadata_DSmith_SIF-ISA.zip

OSD-170/version-5/metadata/GLDS-170_metadata_DSmith_SIF-ISA.zip

['i_Investigation.txt', 's_Burton_Nanopore.txt', 'a_glds-170_metagenome_profiling_nucleotide_sequencing.txt']

{'Amplicon': [], 'GAmplicon': []}

s_Burton_Nanopore.txt

OSD-172

1

['metadata', 'microarray']

{'zip': ['GLDS-172_metadata_GSE94253-ISA.zip']}

GLDS-172_metadata_GSE94253-ISA.zip

OSD-172/version-1/metadata/GLDS-172_metadata_GSE94253-ISA.zip

['a_gse94253_transcription_profiling_microarray.txt', 'i_Investigation.txt', 's_GSE94253.txt']

{'microarray': ['a_gse94253_transcription_profiling_microarray.txt']}

s_GSE94253.txt

OSD-173

9

['metadata', 'rna-seq', 'rna_seq']

{'zip': ['OSD-173_metadata_GLDS-173-ISA.zip']}

OSD-173_metadata_GLDS-173-ISA.zip

OSD-173/version-9/metadata/OSD-173_metadata_GLDS-173-ISA.zip

['a_pmj150512_transcription_profiling_RNA_Sequencing_(RNA-Seq).txt', 's_STS-135 Liver Transcriptomics Data.txt', 'i_Investigation.txt']

{'rna-seq': ['a_pmj150512_transcription_profiling_RNA_Sequencing_(RNA-Seq).txt'], 'rna_seq': ['a_pmj150512_transcription_profiling_RNA_Sequencing_(RNA-Seq).txt']}

s_STS-135 Liver Transcriptomics Data.txt

OSD-174

1

['metadata', 'microarray']

{'zip': ['GLDS-174_metadata_E-GEOD-74708-ISA.zip']}

GLDS-174_metadata_E-GEOD-74708-ISA.zip

OSD-174/version-1/metadata/GLDS-174_metadata_E-GEOD-74708-ISA.zip

['a_e-geod-74708_transcription_profiling_DNA_microarray.txt', 's_E-GEOD-74708.txt', 'i_Investigation.txt']

{'microarray': ['a_e-geod-74708_transcription_profiling_DNA_microarray.txt']}

s_E-GEOD-74708.txt

OSD-175

1

['metadata', 'microarray']

{'zip': ['GLDS-175_metadata_E-GEOD-12435-ISA.zip']}

GLDS-175_metadata_E-GEOD-12435-ISA.zip

OSD-175/version-1/metadata/GLDS-175_metadata_E-GEOD-12435-ISA.zip

['E-GEOD-12435/a_E-GEOD-12435_GeneChip_assay.txt', 'E-GEOD-12435/i_E-GEOD-12435_investigation.txt', 'E-GEOD-12435/s_E-GEOD-12435_study_samples.txt']

{'microarray': []}

E-GEOD-12435/s_E-GEOD-12435_study_samples.txt

OSD-176

2

['metadata', 'microarray']

{'zip': ['GLDS-176_metadata_E-GEOD-18760-v1-ISA.zip']}

GLDS-176_metadata_E-GEOD-18760-v1-ISA.zip

OSD-176/version-2/metadata/GLDS-176_metadata_E-GEOD-18760-v1-ISA.zip

['s_E-GEOD-18760_study_samples.txt', 'a_E-GEOD-18760_GeneChip_assay.txt', 'i_E-GEOD-18760_investigation.txt']

{'microarray': []}

s_E-GEOD-18760_study_samples.txt

OSD-177

6

['metadata', 'wgs']

{'zip': ['GLDS-177_metadata_GLDS-177-ISA.zip']}

GLDS-177_metadata_GLDS-177-ISA.zip

OSD-177/version-6/metadata/GLDS-177_metadata_GLDS-177-ISA.zip

['s_PRJNA437451.txt', 'i_Investigation.txt', 'a_prjna437451_genome_sequencing_nucleotide_sequencing.txt']

{'wgs': []}

s_PRJNA437451.txt

OSD-178

1

['metadata', 'microarray']

{'zip': ['GLDS-178_metadata_E-GEOD-21059-ISA.zip']}

GLDS-178_metadata_E-GEOD-21059-ISA.zip

OSD-178/version-1/metadata/GLDS-178_metadata_E-GEOD-21059-ISA.zip

['a_e-geod-21059_transcription_profiling_DNA_microarray.txt', 'i_Investigation.txt', 's_E-GEOD-21059_study_samples.txt']

{'microarray': ['a_e-geod-21059_transcription_profiling_DNA_microarray.txt']}

s_E-GEOD-21059_study_samples.txt

OSD-18

1

['metadata', 'microarray']

{'zip': ['GLDS-18_metadata_E-GEOD-21093-ISA.zip']}

GLDS-18_metadata_E-GEOD-21093-ISA.zip

OSD-18/version-1/metadata/GLDS-18_metadata_E-GEOD-21093-ISA.zip

['E-GEOD-21093/a_E-GEOD-21093_GeneChip_assay.txt', 'E-GEOD-21093/i_E-GEOD-21093_investigation.txt', 'E-GEOD-21093/s_E-GEOD-21093_study_samples.txt']

{'microarray': []}

E-GEOD-21093/s_E-GEOD-21093_study_samples.txt

OSD-182

1

['metadata', 'microarray']

{'zip': ['GLDS-182_metadata_E-GEOD-24945-ISA.zip']}

GLDS-182_metadata_E-GEOD-24945-ISA.zip

OSD-182/version-1/metadata/GLDS-182_metadata_E-GEOD-24945-ISA.zip

['E-GEOD-24945/a_E-GEOD-24945_GeneChip_assay.txt', 'E-GEOD-24945/i_E-GEOD-24945_investigation.txt', 'E-GEOD-24945/s_E-GEOD-24945_study_samples.txt']

{'microarray': []}

E-GEOD-24945/s_E-GEOD-24945_study_samples.txt

OSD-183

1

['metadata', 'microarray']

{'zip': ['GLDS-183_metadata_E-GEOD-55869-ISA.zip']}

GLDS-183_metadata_E-GEOD-55869-ISA.zip

OSD-183/version-1/metadata/GLDS-183_metadata_E-GEOD-55869-ISA.zip

['E-GEOD-55869/a_E-GEOD-55869_GeneChip_assay.txt', 'E-GEOD-55869/i_E-GEOD-55869_investigation.txt', 'E-GEOD-55869/s_E-GEOD-55869_study_samples.txt']

{'microarray': []}

E-GEOD-55869/s_E-GEOD-55869_study_samples.txt

OSD-185

2

['metadata', 'transcriptomics']

{'zip': ['GLDS-185_metadata_BRIC-21-ISA.zip']}

GLDS-185_metadata_BRIC-21-ISA.zip

OSD-185/version-2/metadata/GLDS-185_metadata_BRIC-21-ISA.zip

['a_bric-21_transcription_profiling_RNA_Sequencing_(RNA-Seq).txt', 's_BRIC-21.txt', 'i_Investigation.txt']

{'transcriptomics': []}

s_BRIC-21.txt

OSD-188

4

['array', 'metadata', 'microarray']

{'zip': ['GLDS-188_metadata_GSE94255-ISA.zip']}

GLDS-188_metadata_GSE94255-ISA.zip

OSD-188/version-4/metadata/GLDS-188_metadata_GSE94255-ISA.zip

['a_gse94255_transcription_profiling_microarray.txt', 's_GSE94255.txt', 'i_Investigation.txt']

{'array': ['a_gse94255_transcription_profiling_microarray.txt'], 'microarray': ['a_gse94255_transcription_profiling_microarray.txt']}

s_GSE94255.txt

OSD-189

1

['metadata', 'microarray']

{'zip': ['GLDS-189_metadata_GSE101101-ISA.zip']}

GLDS-189_metadata_GSE101101-ISA.zip

OSD-189/version-1/metadata/GLDS-189_metadata_GSE101101-ISA.zip

['a_gse101101_transcription_profiling_microarray.txt', 'i_Investigation.txt', 's_GSE101101.txt']

{'microarray': ['a_gse101101_transcription_profiling_microarray.txt']}

s_GSE101101.txt

OSD-19

5

['array', 'metadata', 'microarray']

{'zip': ['GLDS-19_metadata_E-GEOD-1105-ISA.zip']}

GLDS-19_metadata_E-GEOD-1105-ISA.zip

OSD-19/version-5/metadata/GLDS-19_metadata_E-GEOD-1105-ISA.zip

['i_E-GEOD-1105_investigation.txt', 'a_E-GEOD-1105_GeneChip_assay.txt', 's_E-GEOD-1105_study_samples.txt']

{'array': [], 'microarray': []}

s_E-GEOD-1105_study_samples.txt

OSD-190

2

['metadata', 'microarray']

{'zip': ['GLDS-190_metadata_E-GEOD-38877-v1-ISA.zip']}

GLDS-190_metadata_E-GEOD-38877-v1-ISA.zip

OSD-190/version-2/metadata/GLDS-190_metadata_E-GEOD-38877-v1-ISA.zip

['a_assay-DNA_microarray.txt', 's_study.txt', 'i_investigation.txt']

{'microarray': ['a_assay-DNA_microarray.txt']}

s_study.txt

OSD-191

7

['Amplicon', 'GAmplicon', 'metadata']

{'zip': ['GLDS-191_metadata_MGP79314-ISA.zip']}

GLDS-191_metadata_MGP79314-ISA.zip

OSD-191/version-7/metadata/GLDS-191_metadata_MGP79314-ISA.zip

['a_mpg79314_metagenome_profiling_nucleotide_sequencing.txt', 's_MGP79314.txt', 'i_Investigation.txt']

{'Amplicon': [], 'GAmplicon': []}

s_MGP79314.txt

OSD-192

1

['metadata', 'transcriptomics']

{'zip': ['GLDS-192_metadata_PRJNA400816-ISA.zip']}

GLDS-192_metadata_PRJNA400816-ISA.zip

OSD-192/version-1/metadata/GLDS-192_metadata_PRJNA400816-ISA.zip

['a_prjna400816_transcription_profiling_RNA_Sequencing_(RNA-Seq).txt', 'i_Investigation.txt', 's_PRJNA400816.txt']

{'transcriptomics': []}

s_PRJNA400816.txt

OSD-193

1

['metadata', 'rna-seq']

{'zip': ['GLDS-193_metadata_APEX03-2_RNA-Seq_Col0-ISA.zip']}

GLDS-193_metadata_APEX03-2_RNA-Seq_Col0-ISA.zip

OSD-193/version-1/metadata/GLDS-193_metadata_APEX03-2_RNA-Seq_Col0-ISA.zip

['s_APEC03-2 RNA-Seq Col-0.txt', 'a_apex03-2_rna-seq_col-0_transcription_profiling_RNA_Sequencing_(RNA-Seq).txt', 'i_Investigation.txt']

{'rna-seq': ['s_APEC03-2 RNA-Seq Col-0.txt', 'a_apex03-2_rna-seq_col-0_transcription_profiling_RNA_Sequencing_(RNA-Seq).txt']}

s_APEC03-2 RNA-Seq Col-0.txt

OSD-194

10

['metadata', 'rna-seq', 'rna_seq']

{'zip': ['OSD-194_metadata_OSD-194-ISA.zip']}

OSD-194_metadata_OSD-194-ISA.zip

OSD-194/version-10/metadata/OSD-194_metadata_OSD-194-ISA.zip

['s_OSD-194.txt', 'a_OSD-194_transcription-profiling_rna-sequencing-(rna-seq)_illumina.txt', 'i_Investigation.txt']

{'rna-seq': ['a_OSD-194_transcription-profiling_rna-sequencing-(rna-seq)_illumina.txt'], 'rna_seq': []}

s_OSD-194.txt

OSD-195

1

['metadata', 'microarray']

{'zip': ['GLDS-195_metadata_GSE104999-ISA.zip']}

GLDS-195_metadata_GSE104999-ISA.zip

OSD-195/version-1/metadata/GLDS-195_metadata_GSE104999-ISA.zip

['a_gse104999_transcription_profiling_microarray.txt', 's_GSE104999.txt', 'i_Investigation.txt']

{'microarray': ['a_gse104999_transcription_profiling_microarray.txt']}

s_GSE104999.txt

OSD-198

1

['metadata', 'microarray']

{'zip': ['GLDS-198_metadata_GSE74469-ISA.zip']}

GLDS-198_metadata_GSE74469-ISA.zip

OSD-198/version-1/metadata/GLDS-198_metadata_GSE74469-ISA.zip

['s_GSE74469.txt', 'a_gse74469_transcription_profiling_DNA_microarray.txt', 'i_Investigation.txt']

{'microarray': ['a_gse74469_transcription_profiling_DNA_microarray.txt']}

s_GSE74469.txt

OSD-199

2

['metadata', 'transcriptomics']

{'zip': ['GLDS-199_metadata_PRJNA309675-v1-ISA.zip']}

GLDS-199_metadata_PRJNA309675-v1-ISA.zip

OSD-199/version-2/metadata/GLDS-199_metadata_PRJNA309675-v1-ISA.zip

['s_PRJNA309675.txt', 'a_prjna309675_transcription_profiling_RNA_Sequencing_(RNA-Seq).txt', 'i_Investigation.txt']

{'transcriptomics': []}

s_PRJNA309675.txt

OSD-2

2

['metadata', 'microarray']

{'zip': ['GLDS-2_metadata_GLDS-2-ISA.zip']}

GLDS-2_metadata_GLDS-2-ISA.zip

OSD-2/version-2/metadata/GLDS-2_metadata_GLDS-2-ISA.zip

['s_E-GEOD-16518_study_samples.txt', 'a_E-GEOD-16518_DNAmicroarray.txt', 'i_E-GEOD-16518_investigation.txt']

{'microarray': ['a_E-GEOD-16518_DNAmicroarray.txt']}

s_E-GEOD-16518_study_samples.txt

OSD-20

1

['metadata', 'microarray']

{'zip': ['GLDS-20_metadata_E-GEOD-50881-ISA.zip'], 'adf.txt': ['GLDS-20_metadata_A-GEOD-9545.adf.txt']}

GLDS-20_metadata_E-GEOD-50881-ISA.zip

OSD-20/version-1/metadata/GLDS-20_metadata_E-GEOD-50881-ISA.zip

['a_E-GEOD-50881_GeneChip_assay.txt', 's_E-GEOD-50881_study_samples.txt', 'i_E-GEOD-50881_investigation.txt']

{'microarray': []}

s_E-GEOD-50881_study_samples.txt

OSD-200

5

['Amplicon', 'GAmplicon', 'metadata']

{'zip': ['GLDS-200_metadata_DannemillerISS-ISA.zip']}

GLDS-200_metadata_DannemillerISS-ISA.zip

OSD-200/version-5/metadata/GLDS-200_metadata_DannemillerISS-ISA.zip

['s_DannemillerISS.txt', 'a_dannemilleriss_metagenome_profiling_nucleotide_sequencing.txt', 'i_Investigation.txt']

{'Amplicon': [], 'GAmplicon': []}

s_DannemillerISS.txt