1 contributor

Residue eval redesign: expansion-head control arm (B), paired chain bootstrap, within-zone position analysis, contamination gate, readout-capacity ladder

e3a5ff2 verified about 2 months ago

test_compression_audit.py

7.1 kB
ResidueDecoderHead + span masking + --sequence-head wiring; NetSurfP loader, leakage-free residue probe, compression audit, preflight gate and submit scripts about 2 months ago
test_decoder_probe_comparison.py

2.41 kB
Add decoder-only progress probe and baseline comparison about 2 months ago
test_download.py

6.99 kB
NetSurfP-3.0 auto-download (atomic+validated), corrected 68-col layout (no SS3 block, RSA@55, phi/psi@65-66, disorder polarity), dataset-name resolution, prefetch step in submit scripts, RUNBOOK about 2 months ago
test_esm2_baseline.py

5.56 kB
Run ESM2-650M as 2h head plus 8h end-to-end about 2 months ago
test_external_retrieval.py

9.83 kB
Lock each model/dataset directory against concurrent writers and guard the final rename about 2 months ago
test_joint_checkpoint_selection.py

821 Bytes
Add retrieval-preserving joint decoder finetuning about 2 months ago
test_netsurfp.py

16.1 kB
ResidueDecoderHead + span masking + --sequence-head wiring; NetSurfP loader, leakage-free residue probe, compression audit, preflight gate and submit scripts about 2 months ago
test_paired_bootstrap.py

10.2 kB
Residue eval redesign: expansion-head control arm (B), paired chain bootstrap, within-zone position analysis, contamination gate, readout-capacity ladder about 2 months ago
test_remote_retrieval_objective.py

2.58 kB
Add benchmark-aligned remote retrieval calibration about 2 months ago
test_residue_budget.py

2.08 kB
Fix residue-head position overflow, best.pth tracking, and unattended SLURM chain safety about 2 months ago
test_residue_head.py

21.6 kB
Preflight: a residue_decoder checkpoint cannot shrink on head swap, so stop demanding it about 2 months ago
test_residue_probe.py

15.2 kB
Prevent ESM residue probe host-memory OOM and add resume about 2 months ago
test_run_residue_probe.py

9.48 kB
Prevent ESM residue probe host-memory OOM and add resume about 2 months ago
test_zone_position.py

9.57 kB
Residue eval redesign: expansion-head control arm (B), paired chain bootstrap, within-zone position analysis, contamination gate, readout-capacity ladder about 2 months ago