ManpreetK/BiomedNLP-PubMedBERT-base-uncased-abstract-fulltext-NDD-NER
Token Classification
•
Updated
•
1
tokens
sequence | ner_tags
sequence |
---|---|
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0,
2
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This Named Entity Recognition dataset is created for Neurodevelopmental disorders domain to detected domain specific entities. Initially, pubmed abstracts were annotated with SciSpaCy UMLS entity linker and specific semantic types were mapped to required domain specific labels, which were further validated during manual curation process using Label Studio (an open source data labeling tool).
Label Category | UMLS semantic types |
---|---|
CONDITION | Mental or Behavioral Dysfunction, Disease or Syndrome, Neoplastic Process, Congenital Abnormality |
ASSOCIATED_PROBLEM | Sign or Symptom, Mental Process, Injury or Poisoning |
PATIENT_GROUP | Age Group, Population Group, Patient or Disabled Group |
INTERVENTION | Therapeutic or Preventive Procedure, Health Care Activity |
TEST | Diagnostic Procedure, Intellectual Product, Research Activity, Laboratory Procedure |
split name | number of examples | CONDITION | ASSOCIATED_PROBLEM | PATIENT_GROUP | INTERVENTION | TEST |
---|---|---|---|---|---|---|
train | 341 | 320 | 189 | 240 | 273 | 228 |
test | 160 | 139 | 68 | 87 | 98 | 82 |
validation | 177 | 147 | 82 | 104 | 117 | 98 |
Pubmed abstracts for ("Neurodevelopmental Disorders"[Mesh]) AND "Behavioral Disciplines and Activities"[Mesh] query using NCBI E-utilities API.