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Christina Theodoris

ctheodoris
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Recent Activity

new activity 5 days ago
ctheodoris/Geneformer:Quantize issue
new activity 5 days ago
ctheodoris/Geneformer:Discrepancy in ensembl mapping files
updated a model 5 days ago
ctheodoris/Geneformer
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ctheodoris's activity

New activity in ctheodoris/Geneformer 5 days ago

Quantize issue

1
#505 opened about 1 month ago by
yuz299

Discrepancy in ensembl mapping files

1
#515 opened 7 days ago by
rgibbs

How to fine-tune your model for data imputation

12
#507 opened 23 days ago by
cjuigne
New activity in ctheodoris/Geneformer 9 days ago

Gene length per cell in in silico perturb

1
#514 opened 9 days ago by
Tak0329

Cell SubTypes 47/ 53 classes : How?

7
#478 opened 3 months ago by
shakeel604
New activity in ctheodoris/Geneformer 14 days ago

Facing issue with get_stats for in silico perturbation of a set of genes

1
#504 opened about 1 month ago by
vivekksingh

wanted to know about Number of trials for hyperparameter tuning

1
#513 opened 14 days ago by
fhfhede
New activity in ctheodoris/Geneformer 15 days ago

about num_classes of emb_extractor

3
#512 opened 16 days ago by
allenxiao
New activity in ctheodoris/Geneformer 16 days ago

Question about normalization of raw gene counts

1
#510 opened 17 days ago by
michauhl
New activity in ctheodoris/Geneformer 17 days ago

Question about rank-based gene ordering in Geneformer

1
#509 opened 17 days ago by
zs1524
New activity in ctheodoris/Geneformer 21 days ago

in_silico_perturber runtime issue

1
#508 opened 21 days ago by
mmlSk23
New activity in ctheodoris/Geneformer 25 days ago

Decoding Gene Embeddings

1
#502 opened about 1 month ago by
cstansbu

Is there a way to remove batch effects in data using the MTL classifier

1
#503 opened about 1 month ago by
fhfhede

tokenizing leads to missing genes

2
#506 opened 26 days ago by
marvany
New activity in ctheodoris/Geneformer 28 days ago

get_state_embs <cls> token missing in token dictionary

4
#499 opened about 1 month ago by
Yuxi113
New activity in ctheodoris/Geneformer about 1 month ago

Issue in Embedding Extraction

4
#501 opened about 1 month ago by
shakeel604

Classifier stuck on validate

1
#500 opened about 1 month ago by
sanderssm

how to load fine_tuned_models/gf-12L-95M-i4096_MTLCellClassifier_CELLxGENE_240522

1
#498 opened about 1 month ago by
vtrifonov

In silico reprogramming - Enquiry on availability of this code

1
#497 opened about 1 month ago by
vivekksingh

Model fine-tuning results problem

1
#496 opened about 1 month ago by
HJY12138