Christina Theodoris

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New activity in ctheodoris/Geneformer 1 day ago

fix: pin transformers to v4.49.0 to fix ImportError: cannot import name 'AdamW' from 'transformers'

1

#516 opened 5 days ago by

valenzuelaomar

Cell SubTypes 47/ 53 classes : How?

9

#478 opened 3 months ago by

shakeel604

Poor performance of classifier finetuning

5

#518 opened 2 days ago by

ZYSK-huggingface

Had a question to which head is the embedding extraction happening from in MTL

1

#517 opened 3 days ago by

GalenP

New activity in ctheodoris/Geneformer 8 days ago

Quantize issue

1

#505 opened about 1 month ago by

yuz299

Discrepancy in ensembl mapping files

1

#515 opened 10 days ago by

rgibbs

updated a model 8 days ago

ctheodoris/Geneformer

Fill-Mask • Updated 8 days ago • 8.21k • 226

New activity in ctheodoris/Geneformer 8 days ago

How to fine-tune your model for data imputation

12

#507 opened 26 days ago by

cjuigne

New activity in ctheodoris/Geneformer 11 days ago

Gene length per cell in in silico perturb

1

#514 opened 11 days ago by

Tak0329

New activity in ctheodoris/Geneformer 16 days ago

Facing issue with get_stats for in silico perturbation of a set of genes

1

#504 opened about 1 month ago by

vivekksingh

wanted to know about Number of trials for hyperparameter tuning

1

#513 opened 16 days ago by

fhfhede

New activity in ctheodoris/Geneformer 18 days ago

about num_classes of emb_extractor

3

#512 opened 18 days ago by

allenxiao

New activity in ctheodoris/Geneformer 19 days ago

Question about normalization of raw gene counts

1

#510 opened 19 days ago by

michauhl

Question about rank-based gene ordering in Geneformer

1

#509 opened 19 days ago by

zs1524

New activity in ctheodoris/Geneformer 24 days ago

in_silico_perturber runtime issue

1

#508 opened 24 days ago by

mmlSk23

New activity in ctheodoris/Geneformer 27 days ago

Decoding Gene Embeddings

1

#502 opened about 1 month ago by

cstansbu

Is there a way to remove batch effects in data using the MTL classifier

1

#503 opened about 1 month ago by

fhfhede

tokenizing leads to missing genes

2

#506 opened 29 days ago by

marvany

New activity in ctheodoris/Geneformer about 1 month ago

get_state_embs <cls> token missing in token dictionary

4

#499 opened about 2 months ago by

Yuxi113

Issue in Embedding Extraction

4

#501 opened about 1 month ago by

shakeel604