Base model: westlake-repl/SaProt_35M_AF2
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AVIDa-hIL6 is an antigen-variable domain of heavy chain of heavy chain antibody (VHH) interaction dataset produced from an alpaca immunized with the human interleukin-6 (IL-6) protein. This model is used to predict interaction between AVIDa-hIL6 and IL-6 protein.
Task type
protein-protein pair classification
Dataset description
The dataset is from AVIDa-hIL6, which contains 573,891 antigen-VHH pairs with amino acid sequences.
Binary label represented by 1 for the binding pair and 0 for the non-binding pair.
Model input type
Amino acid sequence pair
Performance
test_acc: 0.99
LoRA config
lora_dropout: 0.0
lora_alpha: 16
target_modules: ["query", "key", "value", "intermediate.dense", "output.dense"]
modules_to_save: ["classifier"]
Training config
class: AdamW
betas: (0.9, 0.98)
weight_decay: 0.01
learning rate: 1e-4
epoch: 10
batch size: 280
precision: 16-mixed
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Base model
westlake-repl/SaProt_35M_AF2