error on inference using DNABERT2 - can you please share the environment you used for running it?
Hi,
Can you please share the env or the versions of the main packages used for running DNABERT2? (python version, pytorch, transformers, triton etc)
I saw in github that you recommended installing triton from source code but in one of the issues you recommended installing a specific version using pip.
Thanks!
I'm not sure if what made you write this is the problem about the "config", if it's the case, then useconfig = BertConfig.from_pretrained("zhihan1996/DNABERT-2-117M")model = AutoModel.from_config(config)
instead of
model = AutoModel.from_pretrained("zhihan1996/DNABERT-2-117M", trust_remote_code=True)
and it should work.
I just run the first part of the README and it works well having the latest versions of each requirement except for transformers==4.29.2
Hi, I meant a yml file for conda or a requirments.txt file for pip.
thanks!