Geneformer_ft_BioS74_1kbpHG19_DHSs_H3K27AC_one_shot

This model is a fine-tuned version of ctheodoris/Geneformer on the None dataset. It achieves the following results on the evaluation set:

• Loss: 0.7530
• F1 Score: 0.5490
• Precision: 0.4516
• Recall: 0.7
• Accuracy: 0.3947
• Auc: 0.4667
• Prc: 0.5624

Model description

More information needed

Intended uses & limitations

More information needed

Training and evaluation data

More information needed

Training procedure

Training hyperparameters

The following hyperparameters were used during training:

• learning_rate: 1e-05
• train_batch_size: 8
• eval_batch_size: 8
• seed: 42
• optimizer: Adam with betas=(0.9,0.999) and epsilon=1e-08
• lr_scheduler_type: linear
• num_epochs: 20
• mixed_precision_training: Native AMP

Training results

Training Loss	Epoch	Step	Validation Loss	F1 Score	Precision	Recall	Accuracy	Auc	Prc
0.6556	13.1579	500	0.7530	0.5490	0.4516	0.7	0.3947	0.4667	0.5624

Framework versions

• Transformers 4.46.0.dev0
• Pytorch 2.4.1+cu121
• Datasets 2.18.0
• Tokenizers 0.20.0