Spaces:
Runtime error
Runtime error
migrate to latest myscale
#2
by
mpsk
- opened
app.py
CHANGED
@@ -42,8 +42,11 @@ def init_db():
|
|
42 |
meta_field: Meta field that records if an image is viewed
|
43 |
client: Database connection object
|
44 |
"""
|
45 |
-
|
46 |
-
|
|
|
|
|
|
|
47 |
# We can check if the connection is alive
|
48 |
assert client.is_alive()
|
49 |
meta_field = {}
|
@@ -126,7 +129,7 @@ def esm_search(model, sequnce, batch_converter,top_k=5):
|
|
126 |
client = Client(
|
127 |
url=st.secrets["DB_URL"], user=st.secrets["USER"], password=st.secrets["PASSWD"])
|
128 |
|
129 |
-
result = client.fetch("SELECT seq, distance(
|
130 |
|
131 |
result_temp_seq = []
|
132 |
|
|
|
42 |
meta_field: Meta field that records if an image is viewed
|
43 |
client: Database connection object
|
44 |
"""
|
45 |
+
r = parse("{http_pre}://{host}:{port}", st.secrets["DB_URL"])
|
46 |
+
client = get_client(
|
47 |
+
host=r['host'], port=r['port'], user=st.secrets["USER"], password=st.secrets["PASSWD"],
|
48 |
+
interface=r['http_pre'],
|
49 |
+
)
|
50 |
# We can check if the connection is alive
|
51 |
assert client.is_alive()
|
52 |
meta_field = {}
|
|
|
129 |
client = Client(
|
130 |
url=st.secrets["DB_URL"], user=st.secrets["USER"], password=st.secrets["PASSWD"])
|
131 |
|
132 |
+
result = client.fetch("SELECT seq, distance(representations, " + str(token_list) + ')'+ "as dist FROM default.esm_protein_indexer_768 ORDER BY dist LIMIT 500")
|
133 |
|
134 |
result_temp_seq = []
|
135 |
|