agentmemory-python / src /search.py
Yash030's picture
Initialize Hugging Face Space deployment for AgentMemory Python (clean without assets)
b2d9e47
import re
import math
import json
import base64
import array
import urllib.request
import urllib.parse
from typing import Dict, Any, List, Optional, Tuple, Set
# =====================================================================
# Custom Porter-like Stemmer (Ported from stemmer.ts)
# =====================================================================
step2map = {
"ational": "ate", "tional": "tion", "enci": "ence", "anci": "ance",
"izer": "ize", "iser": "ise", "abli": "able", "alli": "al",
"entli": "ent", "eli": "e", "ousli": "ous", "ization": "ize",
"isation": "ise", "ation": "ate", "ator": "ate", "alism": "al",
"iveness": "ive", "fulness": "ful", "ousness": "ous", "aliti": "al",
"iviti": "ive", "biliti": "ble",
}
step3map = {
"icate": "ic", "ative": "", "alize": "al", "alise": "al",
"iciti": "ic", "ical": "ic", "ful": "", "ness": "",
}
def _has_vowel(s: str) -> bool:
return any(c in "aeiou" for c in s)
def _measure(s: str) -> int:
# Reduce non-vowels (excluding y) to C, vowels (+y) to V
reduced = ""
for c in s:
if c in "aeiouy":
if not reduced or reduced[-1] != "V":
reduced += "V"
else:
if not reduced or reduced[-1] != "C":
reduced += "C"
# count "VC" patterns
return len(re.findall(r"VC", reduced))
def _ends_double_consonant(s: str) -> bool:
return len(s) >= 2 and s[-1] == s[-2] and s[-1] not in "aeiou"
def _ends_cvc(s: str) -> bool:
if len(s) < 3:
return False
c1, v, c2 = s[-3], s[-2], s[-1]
return c1 not in "aeiou" and v in "aeiou" and c2 not in "aeiouwxy"
def stem(word: str) -> str:
if len(word) <= 2:
return word
w = word
# Step 1a
if w.endswith("sses"):
w = w[:-2]
elif w.endswith("ies"):
w = w[:-2]
elif not w.endswith("ss") and w.endswith("s"):
w = w[:-1]
# Step 1b
if w.endswith("eed"):
if _measure(w[:-3]) > 0:
w = w[:-1]
elif w.endswith("ed") and _has_vowel(w[:-2]):
w = w[:-2]
if w.endswith("at") or w.endswith("bl") or w.endswith("iz"):
w += "e"
elif _ends_double_consonant(w) and not w.endswith(("l", "s", "z")):
w = w[:-1]
elif _measure(w) == 1 and _ends_cvc(w):
w += "e"
elif w.endswith("ing") and _has_vowel(w[:-3]):
w = w[:-3]
if w.endswith("at") or w.endswith("bl") or w.endswith("iz"):
w += "e"
elif _ends_double_consonant(w) and not w.endswith(("l", "s", "z")):
w = w[:-1]
elif _measure(w) == 1 and _ends_cvc(w):
w += "e"
# Step 1c
if w.endswith("y") and _has_vowel(w[:-1]):
w = w[:-1] + "i"
# Step 2
for suffix, replacement in step2map.items():
if w.endswith(suffix):
base = w[:-len(suffix)]
if _measure(base) > 0:
w = base + replacement
break
# Step 3
for suffix, replacement in step3map.items():
if w.endswith(suffix):
base = w[:-len(suffix)]
if _measure(base) > 0:
w = base + replacement
break
# Step 4
suffixes_step4 = (
"al", "ance", "ence", "er", "ic", "able", "ible", "ant", "ement",
"ment", "ent", "tion", "sion", "ou", "ism", "ate", "iti", "ous",
"ive", "ize", "ise"
)
if w.endswith(suffixes_step4):
# find matching suffix length
match = re.search(r"(ement|ment|tion|sion|ance|ence|able|ible|ism|ate|iti|ous|ive|ize|ise|ant|ent|al|er|ic|ou)$", w)
if match:
suffix_len = len(match.group(1))
base = w[:-suffix_len]
if _measure(base) > 1:
w = base
# Step 5a
if w.endswith("e"):
base = w[:-1]
if _measure(base) > 1 or (_measure(base) == 1 and not _ends_cvc(base)):
w = base
# Step 5b
if _ends_double_consonant(w) and w.endswith("l") and _measure(w[:-1]) > 1:
w = w[:-1]
return w
# =====================================================================
# Synonym Map (Ported from synonyms.ts)
# =====================================================================
SYNONYM_GROUPS = [
["auth", "authentication", "authn", "authenticating"],
["authz", "authorization", "authorizing"],
["db", "database", "datastore"],
["perf", "performance", "latency", "throughput", "slow", "bottleneck"],
["optim", "optimization", "optimizing", "optimise", "query-optimization"],
["k8s", "kubernetes", "kube"],
["config", "configuration", "configuring", "setup"],
["deps", "dependencies", "dependency"],
["env", "environment"],
["fn", "function"],
["impl", "implementation", "implementing"],
["msg", "message", "messaging"],
["repo", "repository"],
["req", "request"],
["res", "response"],
["ts", "typescript"],
["js", "javascript"],
["pg", "postgres", "postgresql"],
["err", "error", "errors"],
["api", "endpoint", "endpoints"],
["ci", "continuous-integration"],
["cd", "continuous-deployment"],
["test", "testing", "tests"],
["doc", "documentation", "docs"],
["infra", "infrastructure"],
["deploy", "deployment", "deploying"],
["cache", "caching", "cached"],
["log", "logging", "logs"],
["monitor", "monitoring"],
["observe", "observability"],
["sec", "security", "secure"],
["validate", "validation", "validating"],
["migrate", "migration", "migrations"],
["debug", "debugging"],
["container", "containerization", "docker"],
["crash", "crashloop", "crashloopbackoff"],
["webhook", "webhooks", "callback"],
["middleware", "mw"],
["paginate", "pagination"],
["serialize", "serialization"],
["encrypt", "encryption"],
["hash", "hashing"],
]
synonymMap: Dict[str, Set[str]] = {}
for group in SYNONYM_GROUPS:
stemmed = [stem(t.lower()) for t in group]
for s in stemmed:
if s not in synonymMap:
synonymMap[s] = set()
for other in stemmed:
if other != s:
synonymMap[s].add(other)
def get_synonyms(stemmed_term: str) -> List[str]:
return list(synonymMap.get(stemmed_term, []))
# =====================================================================
# CJK Segmenter (Ported from cjk-segmenter.ts)
# =====================================================================
CJK_RE = re.compile(r'[\u3000-\u303f\u3040-\u309f\u30a0-\u30ff\uff00-\uff9f\u4e00-\u9faf\uac00-\ud7a3]')
CJK_RUN_RE = re.compile(r'[\u3000-\u303f\u3040-\u309f\u30a0-\u30ff\uff00-\uff9f\u4e00-\u9faf\uac00-\ud7a3]+')
HANGUL_RE = re.compile(r'[\uac00-\ud7a3]')
KANA_RE = re.compile(r'[\u3040-\u309f\u30a0-\u30ff]')
HANGUL_BLOCK_RE = re.compile(r'[가-힯]+')
jieba_loaded = False
jieba_instance = None
def get_jieba():
global jieba_loaded, jieba_instance
if jieba_loaded:
return jieba_instance
jieba_loaded = True
try:
import jieba
jieba_instance = jieba
except ImportError:
print("[search] Install jieba to improve Chinese word segmentation (pip install jieba)")
return jieba_instance
def has_cjk(text: str) -> bool:
return bool(CJK_RE.search(text))
def segment_cjk(text: str) -> List[str]:
if not has_cjk(text):
return [text]
out: List[str] = []
cursor = 0
for match in CJK_RUN_RE.finditer(text):
start = match.start()
run = match.group(0)
end = match.end()
if start > cursor:
piece = text[cursor:start].strip()
if piece:
out.append(piece)
if HANGUL_RE.search(run):
# Hangul: split by blocks
out.extend(HANGUL_BLOCK_RE.findall(run))
elif KANA_RE.search(run):
# Japanese Kana fallback: split every character
out.extend(list(run))
else:
# Chinese Han: use jieba if available
jb = get_jieba()
if jb:
out.extend([t.strip() for t in jb.cut(run, cut_all=False) if t.strip()])
else:
out.extend(list(run))
cursor = end
if cursor < len(text):
trailing = text[cursor:].strip()
if trailing:
out.append(trailing)
return out
# =====================================================================
# SearchIndex (BM25 - Ported from search-index.ts)
# =====================================================================
class SearchIndex:
def __init__(self):
self.entries: Dict[str, Dict[str, Any]] = {}
self.inverted_index: Dict[str, Set[str]] = {}
self.doc_term_counts: Dict[str, Dict[str, int]] = {}
self.total_doc_length = 0
self.sorted_terms: Optional[List[str]] = None
self.k1 = 1.2
self.b = 0.75
def add(self, obs: Dict[str, Any]) -> None:
obs_id = obs.get("id")
if not obs_id:
return
terms = self.extract_terms(obs)
term_freq: Dict[str, int] = {}
term_count = 0
for term in terms:
term_freq[term] = term_freq.get(term, 0) + 1
term_count += 1
self.entries[obs_id] = {
"obsId": obs_id,
"sessionId": obs.get("sessionId", ""),
"termCount": term_count,
}
self.doc_term_counts[obs_id] = term_freq
self.total_doc_length += term_count
for term in term_freq.keys():
if term not in self.inverted_index:
self.inverted_index[term] = set()
self.inverted_index[term].add(obs_id)
self.sorted_terms = None
def has(self, id: str) -> bool:
return id in self.entries
def remove(self, id: str) -> None:
entry = self.entries.get(id)
if not entry:
return
term_freq = self.doc_term_counts.get(id)
if term_freq:
for term in term_freq.keys():
posting_list = self.inverted_index.get(term)
if posting_list:
posting_list.discard(id)
if not posting_list:
self.inverted_index.pop(term, None)
self.doc_term_counts.pop(id, None)
self.total_doc_length = max(0, self.total_doc_length - entry["termCount"])
self.entries.pop(id, None)
self.sorted_terms = None
def search(self, query: str, limit: int = 20) -> List[Dict[str, Any]]:
raw_terms = self.tokenize(query.lower())
if not raw_terms:
return []
N = len(self.entries)
if N == 0:
return []
avg_doc_len = self.total_doc_length / N
query_terms: List[Dict[str, Any]] = []
seen = set()
for term in raw_terms:
if term not in seen:
seen.add(term)
query_terms.append({"term": term, "weight": 1.0})
for syn in get_synonyms(term):
if syn not in seen:
seen.add(syn)
query_terms.append({"term": syn, "weight": 0.7})
scores: Dict[str, float] = {}
sorted_terms = self.get_sorted_terms()
for q_item in query_terms:
term = q_item["term"]
weight = q_item["weight"]
matching_docs = self.inverted_index.get(term)
if matching_docs:
df = len(matching_docs)
idf = math.log((N - df + 0.5) / (df + 0.5) + 1)
for obs_id in matching_docs:
entry = self.entries[obs_id]
doc_terms = self.doc_term_counts.get(obs_id, {})
tf = doc_terms.get(term, 0)
doc_len = entry["termCount"]
numerator = tf * (self.k1 + 1)
denominator = tf + self.k1 * (1 - self.b + self.b * (doc_len / avg_doc_len))
bm25_score = idf * (numerator / denominator) * weight
scores[obs_id] = scores.get(obs_id, 0.0) + bm25_score
# Prefix matching (binary search)
start_idx = self.lower_bound(sorted_terms, term)
for si in range(start_idx, len(sorted_terms)):
index_term = sorted_terms[si]
if not index_term.startswith(term):
break
if index_term == term:
continue
obs_ids = self.inverted_index.get(index_term, set())
prefix_df = len(obs_ids)
prefix_idf = math.log((N - prefix_df + 0.5) / (prefix_df + 0.5) + 1) * 0.5
for obs_id in obs_ids:
entry = self.entries[obs_id]
doc_terms = self.doc_term_counts.get(obs_id, {})
tf = doc_terms.get(index_term, 0)
doc_len = entry["termCount"]
numerator = tf * (self.k1 + 1)
denominator = tf + self.k1 * (1 - self.b + self.b * (doc_len / avg_doc_len))
scores[obs_id] = scores.get(obs_id, 0.0) + prefix_idf * (numerator / denominator) * weight
results = []
for obs_id, score in scores.items():
entry = self.entries[obs_id]
results.append({
"obsId": obs_id,
"sessionId": entry["sessionId"],
"score": score
})
results.sort(key=lambda x: x["score"], reverse=True)
return results[:limit]
@property
def size(self) -> int:
return len(self.entries)
def clear(self) -> None:
self.entries.clear()
self.inverted_index.clear()
self.doc_term_counts.clear()
self.total_doc_length = 0
self.sorted_terms = None
def restore_from_data(self, data: Dict[str, Any]) -> None:
self.clear()
if not data:
return
for k, v in data.get("entries", []):
self.entries[k] = v
for term, ids in data.get("inverted", []):
self.inverted_index[term] = set(ids)
for id_, counts in data.get("docTerms", []):
self.doc_term_counts[id_] = dict(counts)
self.total_doc_length = int(data.get("totalDocLength", 0))
def serialize_data(self) -> Dict[str, Any]:
entries = list(self.entries.items())
inverted = [(term, list(ids)) for term, ids in self.inverted_index.items()]
doc_terms = [(id_, list(counts.items())) for id_, counts in self.doc_term_counts.items()]
return {
"v": 2,
"entries": entries,
"inverted": inverted,
"docTerms": doc_terms,
"totalDocLength": self.total_doc_length,
}
def extract_terms(self, obs: Dict[str, Any]) -> List[str]:
parts = [
obs.get("title", ""),
obs.get("subtitle", "") or "",
obs.get("narrative", "") or "",
" ".join(obs.get("facts", []) or []),
" ".join(obs.get("concepts", []) or []),
" ".join(obs.get("files", []) or []),
obs.get("type", ""),
]
return self.tokenize(" ".join(parts).lower())
def tokenize(self, text: str) -> List[str]:
# Strip special characters except valid separators
cleaned = re.sub(r'[^\w\s/.\\-_]', ' ', text)
out = []
for raw in cleaned.split():
if len(raw) < 2:
continue
if has_cjk(raw):
for seg in segment_cjk(raw):
if len(seg) >= 1:
out.append(seg)
else:
out.append(stem(raw))
return out
def get_sorted_terms(self) -> List[str]:
if not self.sorted_terms:
self.sorted_terms = sorted(self.inverted_index.keys())
return self.sorted_terms
def lower_bound(self, arr: List[str], target: str) -> int:
lo = 0
hi = len(arr)
while lo < hi:
mid = (lo + hi) // 2
if arr[mid] < target:
lo = mid + 1
else:
hi = mid
return lo
# =====================================================================
# VectorIndex (Cosine Similarity - Ported from vector-index.ts)
# =====================================================================
def float32_to_base64(floats: List[float]) -> str:
arr = array.array('f', floats)
return base64.b64encode(arr.tobytes()).decode('utf-8')
def base64_to_float32(b64: str) -> List[float]:
arr = array.array('f')
arr.frombytes(base64.b64decode(b64))
return list(arr)
def cosine_similarity(a: List[float], b: List[float]) -> float:
if len(a) != len(b) or len(a) == 0:
return 0.0
dot = 0.0
norm_a = 0.0
norm_b = 0.0
for x, y in zip(a, b):
dot += x * y
norm_a += x * x
norm_b += y * y
denom = math.sqrt(norm_a) * math.sqrt(norm_b)
return dot / denom if denom != 0.0 else 0.0
class VectorIndex:
def __init__(self):
self.vectors: Dict[str, Dict[str, Any]] = {}
def add(self, obs_id: str, session_id: str, embedding: List[float]) -> None:
self.vectors[obs_id] = {"embedding": embedding, "sessionId": session_id}
def remove(self, obs_id: str) -> None:
self.vectors.pop(obs_id, None)
def search(self, query: List[float], limit: int = 20) -> List[Dict[str, Any]]:
results = []
for obs_id, entry in self.vectors.items():
score = cosine_similarity(query, entry["embedding"])
results.append({
"obsId": obs_id,
"sessionId": entry["sessionId"],
"score": score
})
results.sort(key=lambda x: x["score"], reverse=True)
return results[:limit]
@property
def size(self) -> int:
return len(self.vectors)
def validate_dimensions(self, expected: int) -> Tuple[List[Dict[str, Any]], Set[int]]:
mismatches = []
seen_dimensions = set()
for obs_id, entry in self.vectors.items():
dim = len(entry["embedding"])
seen_dimensions.add(dim)
if dim != expected:
mismatches.append({"obsId": obs_id, "dim": dim})
return mismatches, seen_dimensions
def clear(self) -> None:
self.vectors.clear()
def serialize_data(self) -> List[Any]:
data = []
for obs_id, entry in self.vectors.items():
data.append([
obs_id,
{
"embedding": float32_to_base64(entry["embedding"]),
"sessionId": entry["sessionId"]
}
])
return data
def restore_from_data(self, data: List[Any]) -> None:
self.clear()
if not isinstance(data, list):
return
for row in data:
try:
if not isinstance(row, list) or len(row) < 2:
continue
obs_id, entry = row
if not isinstance(obs_id, str) or not isinstance(entry, dict):
continue
emb_b64 = entry.get("embedding")
sess_id = entry.get("sessionId")
if not isinstance(emb_b64, str) or not isinstance(sess_id, str):
continue
self.vectors[obs_id] = {
"embedding": base64_to_float32(emb_b64),
"sessionId": sess_id
}
except Exception:
continue
# =====================================================================
# Gemini Embedding Client (Urllib POST completion)
# =====================================================================
class GeminiEmbeddingProvider:
def __init__(self, api_key: str):
self.name = "gemini"
self.dimensions = 768
self.api_key = api_key
self.model = "models/gemini-embedding-001"
self.api_url = f"https://generativelanguage.googleapis.com/v1beta/{self.model}:batchEmbedContents"
def embed(self, text: str) -> List[float]:
results = self.embed_batch([text])
return results[0]
def embed_batch(self, texts: List[str]) -> List[List[float]]:
results: List[List[float]] = []
batch_limit = 100
for i in range(0, len(texts), batch_limit):
chunk = texts[i:i + batch_limit]
payload = {
"requests": [
{
"model": self.model,
"content": {"parts": [{"text": t}]},
"outputDimensionality": self.dimensions,
}
for t in chunk
]
}
req_data = json.dumps(payload).encode("utf-8")
url = f"{self.api_url}?key={self.api_key}"
req = urllib.request.Request(
url,
data=req_data,
headers={"Content-Type": "application/json"},
method="POST"
)
try:
with urllib.request.urlopen(req, timeout=30.0) as response:
resp_data = json.loads(response.read().decode("utf-8"))
for emb in resp_data.get("embeddings", []):
values = emb.get("values", [])
results.append(self._l2_normalize(values))
except Exception as e:
raise RuntimeError(f"Gemini embedding batch call failed: {e}")
return results
def _l2_normalize(self, vec: List[float]) -> List[float]:
sum_sq = sum(x * x for x in vec)
norm = math.sqrt(sum_sq)
if norm == 0:
return vec
return [x / norm for x in vec]
# =====================================================================
# HybridSearch (Triple Stream - Ported from hybrid-search.ts)
# =====================================================================
class HybridSearch:
def __init__(
self,
bm25: SearchIndex,
vector: Optional[VectorIndex],
embedding_provider: Optional[GeminiEmbeddingProvider],
kv: Any,
bm25_weight: float = 0.4,
vector_weight: float = 0.6,
graph_weight: float = 0.3
):
self.bm25 = bm25
self.vector = vector
self.embedding_provider = embedding_provider
self.kv = kv
self.bm25_weight = bm25_weight
self.vector_weight = vector_weight
self.graph_weight = graph_weight
def search(self, query: str, limit: int = 20) -> List[Dict[str, Any]]:
# Triple-stream search combining BM25, vectors, and graph weights
bm25_results = self.bm25.search(query, limit * 2)
vector_results: List[Dict[str, Any]] = []
if self.vector and self.embedding_provider and self.vector.size > 0:
try:
query_embedding = self.embedding_provider.embed(query)
vector_results = self.vector.search(query_embedding, limit * 2)
except Exception:
pass # Fallback to BM25
# Build scores mapping
scores: Dict[str, Dict[str, Any]] = {}
RRF_K = 60
for idx, r in enumerate(bm25_results):
obs_id = r["obsId"]
scores[obs_id] = {
"bm25Rank": idx + 1,
"vectorRank": float("inf"),
"sessionId": r["sessionId"],
"bm25Score": r["score"],
"vectorScore": 0.0,
"graphScore": 0.0,
}
for idx, r in enumerate(vector_results):
obs_id = r["obsId"]
if obs_id in scores:
scores[obs_id]["vectorRank"] = idx + 1
scores[obs_id]["vectorScore"] = r["score"]
else:
scores[obs_id] = {
"bm25Rank": float("inf"),
"vectorRank": idx + 1,
"sessionId": r["sessionId"],
"bm25Score": 0.0,
"vectorScore": r["score"],
"graphScore": 0.0,
}
has_vector = len(vector_results) > 0
effective_bm25_w = self.bm25_weight
effective_vector_w = self.vector_weight if has_vector else 0.0
total_w = effective_bm25_w + effective_vector_w
if total_w > 0:
effective_bm25_w /= total_w
effective_vector_w /= total_w
combined = []
for obs_id, s in scores.items():
combined.append({
"obsId": obs_id,
"sessionId": s["sessionId"],
"bm25Score": s["bm25Score"],
"vectorScore": s["vectorScore"],
"graphScore": s["graphScore"],
"combinedScore": (
effective_bm25_w * (1.0 / (RRF_K + s["bm25Rank"])) +
effective_vector_w * (1.0 / (RRF_K + s["vectorRank"]))
)
})
combined.sort(key=lambda x: x["combinedScore"], reverse=True)
return combined[:limit]