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Update cas12.py
#2
by
LfOreVEr
- opened
cas12.py
CHANGED
@@ -146,8 +146,7 @@ def process_gene(gene_symbol, model_path):
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chr = Exons[j]['seq_region_name']
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targets = find_crispr_targets(gene_sequence, chr, start, strand, transcript_id, exon_id)
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if targets:
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formatted_data = format_prediction_output(targets,
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-
'/content/drive/MyDrive/Colab Notebooks/DeepCpf1/Seq_deepCpf1_weights.h5')
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results.append(formatted_data)
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# for data in formatted_data:
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# print(f"Chr: {data[0]}, Start: {data[1]}, End: {data[2]}, Strand: {data[3]}, target: {data[4]}, gRNA: {data[5]}, pred_Score: {data[6]}")
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chr = Exons[j]['seq_region_name']
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targets = find_crispr_targets(gene_sequence, chr, start, strand, transcript_id, exon_id)
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if targets:
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+
formatted_data = format_prediction_output(targets, model_path)
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results.append(formatted_data)
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# for data in formatted_data:
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# print(f"Chr: {data[0]}, Start: {data[1]}, End: {data[2]}, Strand: {data[3]}, target: {data[4]}, gRNA: {data[5]}, pred_Score: {data[6]}")
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