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Unable to load data
handle = open( Traceback (most recent call last):
File "/usr/local/lib/python3.11/site-packages/panel/io/handlers.py", line 389, in run
exec(self._code, module.dict)
File "/code/Quality_Control.py", line 207, in
print(combine_and_save_metadata_files(metadata_dir, selected_metadata_files))
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/code/Quality_Control.py", line 185, in combine_and_save_metadata_files
df = pd.read_csv(file_path)
^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.11/site-packages/pandas/io/parsers/readers.py", line 1026, in read_csv
return _read(filepath_or_buffer, kwds)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.11/site-packages/pandas/io/parsers/readers.py", line 620, in _read
parser = TextFileReader(filepath_or_buffer, **kwds)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.11/site-packages/pandas/io/parsers/readers.py", line 1620, in init
self._engine = self._make_engine(f, self.engine)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.11/site-packages/pandas/io/parsers/readers.py", line 1880, in _make_engine
self.handles = get_handle(
^^^^^^^^^^^
File "/usr/local/lib/python3.11/site-packages/pandas/io/common.py", line 873, in get_handle
handle = open(
^^^^^
FileNotFoundError: [Errno 2] No such file or directory: 'wetransfer_data-zip_2024-05-17_1431/test_metadata/Slide_B_DD1s1.one_1.tif.csv'
Getting this issue while I am trying to load data although I have that folder.
code reference:
base_dir = "wetransfer_data-zip_2024-05-17_1431"
project_name="test"
metadata_dir = os.path.join(base_dir, project_name + "_metadata")
single_file_path = os.path.join(metadata_dir, selected_metadata_files[0])
single_file_df = pd.read_csv(single_file_path)
Setting up the base_dir with real path solved this issue.
Later faced permission denied issues which are further solved by setting chmod in the Dockerfile