katielink (Katie Link)

upvoted a paper about 15 hours ago

LongHealth: A Question Answering Benchmark with Long Clinical Documents

Paper • 2401.14490 • Published Jan 25 • 1

upvoted a collection about 2 months ago

SegmentNT

Collection

2 items • Updated Mar 15 • 7

upvoted a paper about 2 months ago

Caduceus: Bi-Directional Equivariant Long-Range DNA Sequence Modeling

Paper • 2403.03234 • Published Mar 5 • 10

upvoted a collection about 2 months ago

Caduceus

Collection

https://caduceus-dna.github.io/ • 8 items • Updated 15 days ago • 8

upvoted 2 papers 2 months ago

Benchmarking Retrieval-Augmented Generation for Medicine

Paper • 2402.13178 • Published Feb 20 • 5

BioMistral: A Collection of Open-Source Pretrained Large Language Models for Medical Domains

Paper • 2402.10373 • Published Feb 15 • 7

upvoted a paper 3 months ago

CheXagent: Towards a Foundation Model for Chest X-Ray Interpretation

Paper • 2401.12208 • Published Jan 22 • 20

upvoted 2 papers 4 months ago

Towards Conversational Diagnostic AI

Paper • 2401.05654 • Published Jan 11 • 13

Exploring the Effectiveness of Instruction Tuning in Biomedical Language Processing

Paper • 2401.00579 • Published Dec 31, 2023 • 2

upvoted 6 papers 5 months ago

BIOCLIP: A Vision Foundation Model for the Tree of Life

Paper • 2311.18803 • Published Nov 30, 2023 • 1

EHRSHOT: An EHR Benchmark for Few-Shot Evaluation of Foundation Models

Paper • 2307.02028 • Published Jul 5, 2023 • 3

Cancer-Net PCa-Data: An Open-Source Benchmark Dataset for Prostate Cancer Clinical Decision Support using Synthetic Correlated Diffusion Imaging Data

Paper • 2311.11647 • Published Nov 20, 2023 • 2

COVIDx CXR-4: An Expanded Multi-Institutional Open-Source Benchmark Dataset for Chest X-ray Image-Based Computer-Aided COVID-19 Diagnostics

Paper • 2311.17677 • Published Nov 29, 2023 • 3

NCL-SM: A Fully Annotated Dataset of Images from Human Skeletal Muscle Biopsies

Paper • 2311.15113 • Published Nov 25, 2023 • 2

SA-Med2D-20M Dataset: Segment Anything in 2D Medical Imaging with 20 Million masks

Paper • 2311.11969 • Published Nov 20, 2023 • 4

upvoted a collection 5 months ago

Leaderboards and benchmarks ✨

Collection

Cool leaderboard spaces collection for models across modalities! Text, vision, audio, ... • 56 items • Updated 5 days ago • 51

upvoted 2 papers 5 months ago

MEDITRON-70B: Scaling Medical Pretraining for Large Language Models

Paper • 2311.16079 • Published Nov 27, 2023 • 17

GAIA: a benchmark for General AI Assistants

Paper • 2311.12983 • Published Nov 21, 2023 • 170

upvoted a collection 6 months ago

Biomedical NLP papers

Collection

Papers posted on @ArxivHealthcareNLP@sigmoid.social (Clinical, Healthcare & Biomedical NLP) • 101 items • Updated 4 days ago • 22

upvoted a paper 6 months ago

Publicly Shareable Clinical Large Language Model Built on Synthetic Clinical Notes

Paper • 2309.00237 • Published Sep 1, 2023 • 2

upvoted a collection 6 months ago

Med AI Papers

Collection

25 items • Updated 15 days ago • 6

upvoted 4 papers 6 months ago

A Study of Generative Large Language Model for Medical Research and Healthcare

Paper • 2305.13523 • Published May 22, 2023 • 2

Large language models in medicine: the potentials and pitfalls

Paper • 2309.00087 • Published Aug 31, 2023 • 3

A Survey of Large Language Models for Healthcare: from Data, Technology, and Applications to Accountability and Ethics

Paper • 2310.05694 • Published Oct 9, 2023 • 3

HyenaDNA: Long-Range Genomic Sequence Modeling at Single Nucleotide Resolution

Paper • 2306.15794 • Published Jun 27, 2023 • 16

upvoted 3 collections 6 months ago

upvoted a paper 6 months ago

AeroPath: An airway segmentation benchmark dataset with challenging pathology

Paper • 2311.01138 • Published Nov 2, 2023 • 5

upvoted 2 collections 6 months ago

Radiology

Collection

7 items • Updated Nov 7, 2023 • 5

TIA Toolbox models

Collection

https://tia-toolbox.readthedocs.io/en/latest/pretrained.html • 28 items • Updated Nov 29, 2023 • 3

upvoted 3 papers 6 months ago

Knowledge-based in silico models and dataset for the comparative evaluation of mammography AI for a range of breast characteristics, lesion conspicuities and doses

Paper • 2310.18494 • Published Oct 27, 2023 • 2

MolCA: Molecular Graph-Language Modeling with Cross-Modal Projector and Uni-Modal Adapter

Paper • 2310.12798 • Published Oct 19, 2023 • 4

Better to Ask in English: Cross-Lingual Evaluation of Large Language Models for Healthcare Queries

Paper • 2310.13132 • Published Oct 19, 2023 • 8

upvoted a collection 6 months ago

Medical QA Datasets

Collection

A collection of medical question answering (QA) datasets • 19 items • Updated Oct 31, 2023 • 13

upvoted 5 papers 6 months ago

The impact of using an AI chatbot to respond to patient messages

Paper • 2310.17703 • Published Oct 26, 2023 • 5

Zephyr: Direct Distillation of LM Alignment

Paper • 2310.16944 • Published Oct 25, 2023 • 116

AlpaCare:Instruction-tuned Large Language Models for Medical Application

Paper • 2310.14558 • Published Oct 23, 2023 • 4

NoteChat: A Dataset of Synthetic Doctor-Patient Conversations Conditioned on Clinical Notes

Paper • 2310.15959 • Published Oct 24, 2023 • 5

Exploring the Boundaries of GPT-4 in Radiology

Paper • 2310.14573 • Published Oct 23, 2023 • 7

upvoted a paper 7 months ago

LongLoRA: Efficient Fine-tuning of Long-Context Large Language Models

Paper • 2309.12307 • Published Sep 21, 2023 • 82

upvoted 12 papers 8 months ago

Recovering from Privacy-Preserving Masking with Large Language Models

Paper • 2309.08628 • Published Sep 12, 2023 • 4

RoentGen: Vision-Language Foundation Model for Chest X-ray Generation

Paper • 2211.12737 • Published Nov 23, 2022 • 2

Clinical Text Summarization: Adapting Large Language Models Can Outperform Human Experts

Paper • 2309.07430 • Published Sep 14, 2023 • 25

Do We Still Need Clinical Language Models?

Paper • 2302.08091 • Published Feb 16, 2023 • 3

Clinical Camel: An Open-Source Expert-Level Medical Language Model with Dialogue-Based Knowledge Encoding

Paper • 2305.12031 • Published May 19, 2023 • 5

The Shaky Foundations of Clinical Foundation Models: A Survey of Large Language Models and Foundation Models for EMRs

Paper • 2303.12961 • Published Mar 22, 2023 • 3

Learning to Exploit Temporal Structure for Biomedical Vision-Language Processing

Paper • 2301.04558 • Published Jan 11, 2023 • 2

LLaVA-Med: Training a Large Language-and-Vision Assistant for Biomedicine in One Day

Paper • 2306.00890 • Published Jun 1, 2023 • 9

Large-Scale Domain-Specific Pretraining for Biomedical Vision-Language Processing

Paper • 2303.00915 • Published Mar 2, 2023 • 4

From Sparse to Dense: GPT-4 Summarization with Chain of Density Prompting

Paper • 2309.04269 • Published Sep 8, 2023 • 28

Scaling Clinical Trial Matching Using Large Language Models: A Case Study in Oncology

Paper • 2308.02180 • Published Aug 4, 2023 • 9

MedAlign: A Clinician-Generated Dataset for Instruction Following with Electronic Medical Records

Paper • 2308.14089 • Published Aug 27, 2023 • 24

upvoted 7 papers 9 months ago

OpenProteinSet: Training data for structural biology at scale

Paper • 2308.05326 • Published Aug 10, 2023 • 10

Shepherd: A Critic for Language Model Generation

Paper • 2308.04592 • Published Aug 8, 2023 • 27

SILO Language Models: Isolating Legal Risk In a Nonparametric Datastore

Paper • 2308.04430 • Published Aug 8, 2023 • 9

UniversalNER: Targeted Distillation from Large Language Models for Open Named Entity Recognition

Paper • 2308.03279 • Published Aug 7, 2023 • 19

Towards Generalist Biomedical AI

Paper • 2307.14334 • Published Jul 26, 2023 • 10

ELIXR: Towards a general purpose X-ray artificial intelligence system through alignment of large language models and radiology vision encoders

Paper • 2308.01317 • Published Aug 2, 2023 • 12

Med-Flamingo: a Multimodal Medical Few-shot Learner

Paper • 2307.15189 • Published Jul 27, 2023 • 21

Katie Link

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