Han Chen

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updated a model about 1 month ago

ctheodoris/Geneformer

Fill-Mask • Updated 1 day ago • 1.91k • 221

New activity in ctheodoris/Geneformer about 1 month ago

Prepare data cell level pass cell state dict instead of genes

#483 opened about 1 month ago by

hchen725

New activity in ctheodoris/Geneformer about 2 months ago

Fix how mappings and train and val data are returned

#473 opened about 2 months ago by

hchen725

New activity in ctheodoris/Geneformer 2 months ago

Upload gene_name_id_dict_gc95M.pkl

#470 opened 2 months ago by

hchen725

New activity in ctheodoris/Geneformer 3 months ago

Add checks for custom attributes and n_counts prior to sum ensembl id

#461 opened 3 months ago by

hchen725

New activity in ctheodoris/Geneformer 4 months ago

Update geneformer/emb_extractor.py

#453 opened 4 months ago by

hchen725

Update geneformer/tokenizer.py

#450 opened 4 months ago by

hchen725

New activity in ctheodoris/Geneformer 6 months ago

Update trainer output dir

#427 opened 6 months ago by

hchen725

Update geneformer/tokenizer.py

#415 opened 6 months ago by

hchen725

New activity in ctheodoris/Geneformer 7 months ago

Remove circular import from .data

1

#381 opened 7 months ago by

hchen725

Add function for summing of Ensembl IDs

#377 opened 7 months ago by

hchen725

New activity in ctheodoris/Geneformer 8 months ago

Add function to get number of model embeddings

#364 opened 8 months ago by

hchen725

embs_df with all model embeddings

#363 opened 8 months ago by

hchen725

Update geneformer/perturber_utils.py

1

#362 opened 8 months ago by

hchen725

Update geneformer/perturber_utils.py

#361 opened 8 months ago by

hchen725

New activity in ctheodoris/Geneformer 9 months ago

Update geneformer/emb_extractor.py

1

#356 opened 9 months ago by

hchen725

Update geneformer/in_silico_perturber.py

1

#355 opened 9 months ago by

hchen725

Update geneformer/perturber_utils.py

#353 opened 9 months ago by

hchen725

Update geneformer/perturber_utils.py

1

#354 opened 9 months ago by

hchen725

Update geneformer/emb_extractor.py

#352 opened 9 months ago by

hchen725