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tsantosh7
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COVID-19_Annotations

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An error occurred while generating the dataset All the data files must have the same columns, but at some point there are 1 new columns (RNA) and 1 missing columns (ABSTRACT). This happened while the csv dataset builder was generating data using hf://datasets/tsantosh7/COVID-19_Annotations/dev.tsv (at revision b31afad97a9fada96522cc2f5b080338d4a3f7cd) Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
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ABSTRACT
string
O
string
:
O
A
O
region
O
of
O
the
O
bovine
B-SPEC
coronavirus
B-SPEC
(
O
BCV
B-SPEC
)
O
genome
O
that
O
functions
O
as
O
a
O
packaging
O
signal
O
has
O
been
O
cloned
O
.
O
The
O
291
O
-
O
nucleotide
B-CHED
clone
O
shares
O
72
O
%
O
homology
O
with
O
the
O
region
O
of
O
mouse
B-DISO
hepatitis
I-DISO
coronavirus
B-SPEC
(
O
MHV
B-SPEC
)
O
gene
O
1b
O
that
O
contains
O
the
O
packaging
O
signal
O
.
O
The
O
data
O
demonstrate
O
that
O
the
O
BCV
B-SPEC
genome
O
contains
O
a
O
sequence
O
that
O
is
O
conserved
O
at
O
both
O
the
O
sequence
O
and
O
functional
O
levels
O
,
O
thus
O
broadening
O
our
O
insight
O
into
O
coronavirus
B-SPEC
packaging
O
.
O
TITLE
O
:
O
Comparison
O
of
O
systemic
O
cytokine
O
levels
O
in
O
patients
O
with
O
acute
B-DISO
respiratory
I-DISO
distress
I-DISO
syndrome
I-DISO
,
O
severe
O
pneumonia
O
,
O
and
O
controls
O
.
O
ABSTRACT
O
:
O
End of preview.

Named Entity Recognition for COVID-19 Bio Entities The dataset was taken from https://github.com/davidcampos/covid19-corpus

Dataset The dataset was then split into several datasets each one representing one entity. Namely, Disorder, Species, Chemical or Drug, Gene and Protein, Enzyme, Anatomy, Biological Process, Molecular Function, Cellular Component, Pathway and microRNA. Moreover, another dataset is also created with all those aforementioned that are non-overlapping in nature.

Dataset Formats The datasets are available in two formats IOB and Spacy's JSONL format.

IOB : https://github.com/tsantosh7/COVID-19-Named-Entity-Recognition/tree/master/Datasets/BIO

SpaCy JSONL: https://github.com/tsantosh7/COVID-19-Named-Entity-Recognition/tree/master/Datasets/SpaCy

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