Datasets:
Tasks:
Token Classification
Sub-tasks:
named-entity-recognition
Languages:
English
Multilinguality:
monolingual
Size Categories:
10K<n<100K
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File size: 2,271 Bytes
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---
language:
- en
license:
- other
multilinguality:
- monolingual
size_categories:
- 10K<n<100K
task_categories:
- token-classification
task_ids:
- named-entity-recognition
pretty_name: BioNLP2004
---
# Dataset Card for "tner/bionlp2004"
## Dataset Description
- **Repository:** [T-NER](https://github.com/asahi417/tner)
- **Paper:** [https://aclanthology.org/U15-1010.pdf](https://aclanthology.org/U15-1010.pdf)
- **Dataset:** BioNLP2004
- **Domain:** Biochemical
- **Number of Entity:** 5
### Dataset Summary
BioNLP2004 NER dataset formatted in a part of [TNER](https://github.com/asahi417/tner) project.
BioNLP2004 dataset contains training and test only, so we randomly sample a half size of test instances from the training set to create validation set.
- Entity Types: `DNA`, `protein`, `cell_type`, `cell_line`, `RNA`
## Dataset Structure
### Data Instances
An example of `train` looks as follows.
```
{
'tags': [0, 0, 0, 0, 3, 0, 9, 10, 0, 0, 0, 0, 0, 7, 8, 0, 3, 0, 0, 9, 10, 10, 0, 0],
'tokens': ['In', 'the', 'presence', 'of', 'Epo', ',', 'c-myb', 'mRNA', 'declined', 'and', '20', '%', 'of', 'K562', 'cells', 'synthesized', 'Hb', 'regardless', 'of', 'antisense', 'myb', 'RNA', 'expression', '.']
}
```
### Label ID
The label2id dictionary can be found at [here](https://huggingface.co/datasets/tner/fin/raw/main/dataset/label.json).
```python
{
"O": 0,
"B-DNA": 1,
"I-DNA": 2,
"B-protein": 3,
"I-protein": 4,
"B-cell_type": 5,
"I-cell_type": 6,
"B-cell_line": 7,
"I-cell_line": 8,
"B-RNA": 9,
"I-RNA": 10
}
```
### Data Splits
| name |train|validation|test|
|---------|----:|---------:|---:|
|bionlp2004 |16619 | 1927| 3856|
### Citation Information
```
@inproceedings{collier-kim-2004-introduction,
title = "Introduction to the Bio-entity Recognition Task at {JNLPBA}",
author = "Collier, Nigel and
Kim, Jin-Dong",
booktitle = "Proceedings of the International Joint Workshop on Natural Language Processing in Biomedicine and its Applications ({NLPBA}/{B}io{NLP})",
month = aug # " 28th and 29th",
year = "2004",
address = "Geneva, Switzerland",
publisher = "COLING",
url = "https://aclanthology.org/W04-1213",
pages = "73--78",
}
``` |