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Couldn't get the size of external files in `_split_generators` because a request failed:
No connection adapters were found for 'ftp://ftp.sra.ebi.ac.uk/vol1/run//ERR173/ERR173157/CTCF_full_AJ_TAGCGA20NGCT_4.fastq.gz'
Please consider moving your data files in this dataset repository instead (e.g. inside a data/ folder).
Error code: ExternalFilesSizeRequestError Exception: InvalidSchema Message: No connection adapters were found for 'ftp://ftp.sra.ebi.ac.uk/vol1/run//ERR173/ERR173157/CTCF_full_AJ_TAGCGA20NGCT_4.fastq.gz' Traceback: Traceback (most recent call last): File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 478, in _is_too_big_from_external_data_files for i, size in enumerate(pool.imap_unordered(get_size, ext_data_files)): File "/usr/local/lib/python3.9/multiprocessing/pool.py", line 870, in next raise value File "/usr/local/lib/python3.9/multiprocessing/pool.py", line 125, in worker result = (True, func(*args, **kwds)) File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 376, in _request_size response = http_head(url, headers=headers, max_retries=3) File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/utils/file_utils.py", line 429, in http_head response = _request_with_retry( File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/utils/file_utils.py", line 328, in _request_with_retry response = requests.request(method=method.upper(), url=url, timeout=timeout, **params) File "/src/services/worker/.venv/lib/python3.9/site-packages/requests/api.py", line 59, in request return session.request(method=method, url=url, **kwargs) File "/src/services/worker/.venv/lib/python3.9/site-packages/requests/sessions.py", line 589, in request resp = self.send(prep, **send_kwargs) File "/src/services/worker/.venv/lib/python3.9/site-packages/requests/sessions.py", line 697, in send adapter = self.get_adapter(url=request.url) File "/src/services/worker/.venv/lib/python3.9/site-packages/requests/sessions.py", line 794, in get_adapter raise InvalidSchema(f"No connection adapters were found for {url!r}") requests.exceptions.InvalidSchema: No connection adapters were found for 'ftp://ftp.sra.ebi.ac.uk/vol1/run//ERR173/ERR173157/CTCF_full_AJ_TAGCGA20NGCT_4.fastq.gz'
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id
int32 | identifier
string | seq
string | quality
string |
---|---|---|---|
0 | HISEQ:AC035FACXX:7 | TACTTGTCCCCAACCACGCA | FFHHHHHJJJJJJJJJJJJJ |
1 | HISEQ:AC035FACXX:7 | AAGTCCTACCGGTAGGTGGC | FFHHHHHJJJJJGIJJEHII |
2 | HISEQ:AC035FACXX:7 | CACCTAGCGGCGAAAGGTAC | FFHHHHHJJJJJJJJJJCFG |
3 | HISEQ:AC035FACXX:7 | TCGCACTACCGCTAGAGGGC | FFHHHHHJJJJJJJJJJJJJ |
4 | HISEQ:AC035FACXX:7 | CACCTAGTGGTTGAATGCGC | FFHHHHHGHIIIIJJJJJJI |
5 | HISEQ:AC035FACXX:7 | ACCTCCCACCGCTAGATGGC | FFHGHHHIIJIJGIJIGIJI |
6 | HISEQ:AC035FACXX:7 | GGAACGGAAAGGGATTTTCT | FFFHHHHDHIJIHGIJJIJJ |
7 | HISEQ:AC035FACXX:7 | ACGTGTCACCACTAGATGGC | FFHHHHHJJJJJJJJJJJJJ |
8 | HISEQ:AC035FACXX:7 | TAAACACTAGGGGGCGCACT | FFHHGFHEHIJIIGIIGGGI |
9 | HISEQ:AC035FACXX:7 | GACGTGCGCGAAGTGCGGTA | FFHHFHHIJJJJJGHHIJFG |
10 | HISEQ:AC035FACXX:7 | TGACCGCTAGGGGGCGTCAC | FFHHHHHJJJJJJJJJIIJJ |
11 | HISEQ:AC035FACXX:7 | TAGTGAAGCCACTAGGGGGC | FFHHHHHJIIJJJJJJJJJJ |
12 | HISEQ:AC035FACXX:7 | TGAACGAACACCCATAACGC | FFHHHHHIJIJJJJJJJJIJ |
13 | HISEQ:AC035FACXX:7 | ACACGAACACTGCTGATACG | FFHHHHHJJJJJJJJJJJJJ |
14 | HISEQ:AC035FACXX:7 | TGATGTTTCATAATAGGTAT | FFHHHFFIIIHIJIJJJHHJ |
15 | HISEQ:AC035FACXX:7 | CGCGCACGCCACTAGGGGGA | FFHHGHHJJJJJJIJJJJJI |
16 | HISEQ:AC035FACXX:7 | GTAAGCCGCTAGGTGGCGCT | FFHHHHHJJJJJJEHIJJJI |
17 | HISEQ:AC035FACXX:7 | CTCCCTCACCACAAGGTGGC | FFHHHHHJJJJJJJJJCGHI |
18 | HISEQ:AC035FACXX:7 | CGTAACCACCAGTAGATGGC | FFHFHGHJJJJJIIIIJJJI |
19 | HISEQ:AC035FACXX:7 | ATACACGACCACTAGAGGGC | FFHHHHHJJJJJIJJJJJIJ |
20 | HISEQ:AC035FACXX:7 | CGCAACTACCACAAGGGGGC | FFGHHHFGHDBBGAHIJJI< |
21 | HISEQ:AC035FACXX:7 | CCACCAACATCTCGATGCCT | FFHHHHHJJJJJJJJJJJJJ |
22 | HISEQ:AC035FACXX:7 | TAAGACCGCCGCTAGGGGGC | FFHHHHHJJJJJJJJJJJJJ |
23 | HISEQ:AC035FACXX:7 | CAAAACCATCAGCAGGGGGC | FFHHHHHJJJJJJJJJJJJJ |
24 | HISEQ:AC035FACXX:7 | CACCTAGTGGCAGAGATTGC | FFHHHHHHJJJJJIJIJJJJ |
25 | HISEQ:AC035FACXX:7 | CCTCTAGCGGTAAGGCGCGA | FFHHHHHJJJGIJJJJJJJI |
26 | HISEQ:AC035FACXX:7 | TGTCCTCTAGAGGGCGCCAC | FFHHHHHJJIEIIJJJIJJB |
27 | HISEQ:AC035FACXX:7 | CCACCCCTAACACCTCGAAT | DDFFDF?GF@GF<BFFG<?D |
28 | HISEQ:AC035FACXX:7 | TCTCGTTTGTGGACGTAACG | FFHHHHHJJHIJJJJJJJJJ |
29 | HISEQ:AC035FACXX:7 | TAGGGGGCGCTAGTGAGTTG | A?DBFHD?DHGAD?B4C==F |
30 | HISEQ:AC035FACXX:7 | AGTGCTTCTTCTCCTGCATA | FFHHHHHJJJJJJJJJJJJJ |
31 | HISEQ:AC035FACXX:7 | ATGTACACCGAAAATAAGTT | FFHHHHGJJJJJJJJIIIIJ |
32 | HISEQ:AC035FACXX:7 | CACACCATGTCGTATAATAC | FFHHHHHJJJJJJJJJJJJJ |
33 | HISEQ:AC035FACXX:7 | TAGTGACCACAAGGGGGCGC | DDDCFHHIGIGGGIJJGIIG |
34 | HISEQ:AC035FACXX:7 | ACGCAACTGGCTTCGTAACA | FFHGHHHJJJJJJJJIJJJJ |
35 | HISEQ:AC035FACXX:7 | GGAAAGTACCACTAGGTGGC | FFHHHGBGHIJJIJJICFIJ |
36 | HISEQ:AC035FACXX:7 | CACGAACGCCACCAGAGGGC | FFHGHGHJJJJJJJJGJJJJ |
37 | HISEQ:AC035FACXX:7 | TAACATCACCGATAGGTGGC | FFHHHHHJJJJJJJJJEGII |
38 | HISEQ:AC035FACXX:7 | CAGCGCCCCCTCGCGGTCAC | FFGGDHHJJJJIJJJJGIGI |
39 | HISEQ:AC035FACXX:7 | TCGTGCGGACACTAGGTGGC | FFHFHHHJGIIJIIIJ?FG> |
40 | HISEQ:AC035FACXX:7 | TAGCGCCACCTTGCGTCCAT | FFHHHHHJJJJJJJJJJJJJ |
41 | HISEQ:AC035FACXX:7 | AAGAAGGAAGTACTGAGAAC | FFHHHHHJJJIIJJJJJJJJ |
42 | HISEQ:AC035FACXX:7 | CAGGACGACCACCACGTGTT | FFHHHHHIJJJJJJJJHIIJ |
43 | HISEQ:AC035FACXX:7 | ATCAGCCGATAGATGGGTCG | FFHHHHHJJJJJJJJJJGHJ |
44 | HISEQ:AC035FACXX:7 | AAAGAGTGAATCCTATGAAA | FFHHHHFHIJJJJJJJJJJJ |
45 | HISEQ:AC035FACXX:7 | CACCTAGCGGTGCTATAGCA | FFHHHGHJJJ@FHGIJJIJI |
46 | HISEQ:AC035FACXX:7 | CACGTTTAGCGCCCCCTAGC | FDHHHHHIJGGHJJJJJJJD |
47 | HISEQ:AC035FACXX:7 | GTAAAAAGGGGCGAAATGCT | FDHHHHHJJJJJIIJJJJJJ |
48 | HISEQ:AC035FACXX:7 | AAGAATAGCCGCTAGATGGC | FFHHHHHJJJJJJJJJJJJJ |
49 | HISEQ:AC035FACXX:7 | ACGTGTCCCTCGAACCAGTA | FFHFHHFIGIJIIIJJJJEH |
50 | HISEQ:AC035FACXX:7 | CCTCTAGTGGCGTGTTGGAT | FFHHHHHHHHIJGGHGIJJJ |
51 | HISEQ:AC035FACXX:7 | ACTACAAGCCAGTAGGTGGC | FFHHHHHJJJJJIIJJFGII |
52 | HISEQ:AC035FACXX:7 | CACCTAGTGGCCATAAAGTA | FFHHHHHFHIIIJJJJJJGG |
53 | HISEQ:AC035FACXX:7 | TATACGCACCACAAGGTGGC | FFHHHHGJJJJJJJJJCGII |
54 | HISEQ:AC035FACXX:7 | ATAGCGCCCCCTAGCGATGA | FFHHHHHJJJJJJJJJJJJJ |
55 | HISEQ:AC035FACXX:7 | GCGCCCCCTACCGTTGAACT | FFHHHHHJJJJJJJJIJJJJ |
56 | HISEQ:AC035FACXX:7 | CCCCTAGTGGACACCACACA | FFFGHHHGHJGIIIIJJIJJ |
57 | HISEQ:AC035FACXX:7 | CACGTAGAACGCTAGGTGGC | FFHHFFHJJJJJJJJJFHIJ |
58 | HISEQ:AC035FACXX:7 | CCAAGAACAAACACTCGACT | <<<<2<+<AE;<F8111111 |
59 | HISEQ:AC035FACXX:7 | CGTCCCCACCACTAGAGGGC | DDFFFHHIJIIHGEHFFHGB |
60 | HISEQ:AC035FACXX:7 | CAACACTACCACTAGGTGGC | FFHHHHHJJJJJJJJJFHJJ |
61 | HISEQ:AC035FACXX:7 | TAGGTTCGCCGCCAGGGGGC | DDF?<DD@GDA@FFDEHHIE |
62 | HISEQ:AC035FACXX:7 | CCTCTAGTGGCGATTATGGA | FFHHHHHHIJIJIJJIJJJC |
63 | HISEQ:AC035FACXX:7 | GGTGGTCACCACGAGGTGGC | FFFHHHHJJJJJJJJJGHII |
64 | HISEQ:AC035FACXX:7 | CCACCGGAACTTGCCATCAC | FFHHHHHJJJJJJJJJJJJJ |
65 | HISEQ:AC035FACXX:7 | TTTACTACGCCCGCATACCC | FFHHHHHJJJJJIJJJJJJJ |
66 | HISEQ:AC035FACXX:7 | GTTTAAACTCCTTCCCCATC | FFHHHHFIJJJJJJJJJJJJ |
67 | HISEQ:AC035FACXX:7 | CCAGGGTGGAGGTATCATTG | D<DFDH2AFCFFCG?FGHIG |
68 | HISEQ:AC035FACXX:7 | ACACAACGCCACCAGGGGGC | FFHHGDHIIIJJJJJJJJJG |
69 | HISEQ:AC035FACXX:7 | GCGCCATCTAGTGGCCATAC | FFHHHHHJJJJJJJJJJJJJ |
70 | HISEQ:AC035FACXX:7 | TTGCCTATGAACTGCCTTGC | FFHHHHGJJJJJJJJIIJJH |
71 | HISEQ:AC035FACXX:7 | GAAATCAGAGGTACTAAACA | FFHHHHHJJJJGHIJJJJJJ |
72 | HISEQ:AC035FACXX:7 | ACAGCGACACCTAGCGGACA | FFHHHHHJJJJJIJJJJIJI |
73 | HISEQ:AC035FACXX:7 | CCCCTAGTGGTGAAGTGCTG | FFHHHHHIIJHIJJJIJJJJ |
74 | HISEQ:AC035FACXX:7 | CAAACCGCCCGCCTAAAGCG | FFHHHHHJJJJJJJJJJJJJ |
75 | HISEQ:AC035FACXX:7 | CCCCTACCGGTCACCCACGC | FFHHHHHJJJHIIJJJJJJJ |
76 | HISEQ:AC035FACXX:7 | CACGCCCCCTAGCGACCATT | DDHHHGHIIIG;FFGIIEIG |
77 | HISEQ:AC035FACXX:7 | GGATGCGCAACCACTACAAA | FFHHHHHJIIJJIJJJJIJJ |
78 | HISEQ:AC035FACXX:7 | TGGACAACACGCGTATTTAC | FFHHHHHJJJJJJGIIJJJJ |
79 | HISEQ:AC035FACXX:7 | CCCCTAGCGGACAAATAGTA | FFHHHHHJJJJJJJIJJIHI |
80 | HISEQ:AC035FACXX:7 | CACATCTACCACAAGGGGGC | FFHHHHHJJJJJJJJJJJJI |
81 | HISEQ:AC035FACXX:7 | AGAGCCATCCACTAGGGGGC | FFHHHHHJJJJJJJJJJJJJ |
82 | HISEQ:AC035FACXX:7 | CACCTAGTGGTGACTATGAT | FFHHHHHIJJHIJJJIJJHJ |
83 | HISEQ:AC035FACXX:7 | TAATCCCTGCCAGAGGAATC | FFHHHHHJJJJJJJJJJIJJ |
84 | HISEQ:AC035FACXX:7 | TATTTCCGACTTCCTGCCCC | FFHHHHHJJJJJJJJIJJJJ |
85 | HISEQ:AC035FACXX:7 | CGCACTCACCACTAGGTGGC | FFHHHHHJJJJJJJJIDHIJ |
86 | HISEQ:AC035FACXX:7 | TTGCGCGTGCACTAGGGGGC | FDDHDHDCGIHGEEHIIIE: |
87 | HISEQ:AC035FACXX:7 | AGACACTCATATGAGAACAT | FFHHHHHJJJJJJJJJJJJJ |
88 | HISEQ:AC035FACXX:7 | CACAATGGCCATTAGAGGGC | FFHHHHHIIJJJJJJGHIIG |
89 | HISEQ:AC035FACXX:7 | GGTCCAATTAAGCTCGCAAT | FFFHHHGJJJJJJJJJJJJJ |
90 | HISEQ:AC035FACXX:7 | CGACGTTGCCAGTAGGTGGC | FFHHHHHJJJJJHIIJBGII |
91 | HISEQ:AC035FACXX:7 | CACCTACTGGTGGATGTATA | FFHHHHHJJJEHIIJJIIJJ |
92 | HISEQ:AC035FACXX:7 | CACCTAGTGGTGGACGGTAC | FFGHHDHEGGFEHIJJJCBE |
93 | HISEQ:AC035FACXX:7 | GGTAGTGTCCACTAGGTGGC | FFHHHHHHIJJJJJJJCGHI |
94 | HISEQ:AC035FACXX:7 | TGCTGGAGCATATAAATAAA | FFHHHHHJJJJJJJJJJJJJ |
95 | HISEQ:AC035FACXX:7 | GCGATGGTGCCCACCGTGGT | FFHHGGFGIIIJJJJJDFHB |
96 | HISEQ:AC035FACXX:7 | GTGAACATCCGCCAGGTGGC | FDHHHHHJJJJJJIJJFHIG |
97 | HISEQ:AC035FACXX:7 | CCCCTAGCGGTAGTGCTTGC | FFHHHHHJJJHIJHIJJJJI |
98 | HISEQ:AC035FACXX:7 | GGTCCACACCGATAGGTGGC | FFHHHHHJJJJJJJJJFHII |
99 | HISEQ:AC035FACXX:7 | GAACGTTGCCACTAGAGGGC | FFHHFFHF>GEGGGIHHGGG |
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