Patent Application: US-61905109-A

Abstract:
the present invention relates to a method of producing a parthenocarpic , and optionally male sterile , tomato plant comprising introgressing into said plant a genetic region from chromosome 4 , 5 and / or 12 of s . habrochaites lyc4 / 78 , a representative sample of seed of which was deposited on 13 nov . 2007 with the ncimb under accession number 41517 , wherein the genetic region from chromosome 4 of s . habrochaites lyc4 / 78 includes at least one marker selected from marker cd59 , rflp marker ct229 , and cos marker t1068 , and wherein the genetic region from chromosome 5 of s . habrochaites lyc4 / 78 includes at least one marker selected from cos marker t1181 , rflp marker tg441 and / or rflp marker cd31 .

Description:
as used herein , the term “ parthenocarpy ” refers to the production of seedless fruit which develop in absence of pollination and / or fertilization . unless otherwise indicated , the term refers to genetic parthenocarpy . unless otherwise indicated , the term refers to total parthenocarpy , meaning that the fruits are entirely seedless and non - deformed but having a normal regular shape . parthenocarpic plants can no longer sexually reproduce , but may propagate by asexual means . in particular , the term “ parthenocarpic ”, or the related term “ parthenocarpy ”, is used herein to define a phenotype of a plant wherein the plant produces seedless fruits that are otherwise of normal size . a seedless plant that produces considerably smaller fruits is not considered parthenocarpic as the term is used herein . a plant having poor seed set is not necessarily parthenocarpic . in fact , the term refers to plants being entirely seedless . in the present description the term “ parthenocarpic plant ” refers to a plant comprising the genetic element from s . habrochaites lyc4 / 78 , as defined herein , and which produces seedless fruits which are essentially equal in size to the original recipient parent and non - deformed . as used herein , the term “ allele ( s )” means any of one or more alternative forms of a gene , all of which alleles relate to at least one trait or characteristic . in a diploid cell or organism , the two alleles of a given gene occupy corresponding loci on a pair of homologous chromosomes . since the present invention relates to qtls , i . e . genomic regions that may comprise one or more genes , but also regulatory sequences , it is in some instances more accurate to refer to “ haplotype ” ( i . e . an allele of a chromosomal segment ) in stead of “ allele ”, however , in those instances , the term “ allele ” should be understood to comprise the term “ haplotype ”. a “ gene ” is defined herein as a hereditary unit consisting of a sequence of dna that occupies a specific location on a chromosome and that contains the genetic instruction for a particular characteristics or trait in an organism . a “ locus ” is defined herein as the position that a given gene occupies on a chromosome of a given species . as used herein , the term “ heterozygous ” means a genetic condition existing when different alleles reside at corresponding loci on homologous chromosomes . as used herein , the term “ homozygous ” means a genetic condition existing when identical alleles reside at corresponding loci on homologous chromosomes . as used herein , the term “ hybrid ” means any offspring of a cross between two genetically unlike individuals , including but not limited to the cross between two inbred lines . as used herein , the term “ inbred ” means a substantially homozygous individual or line in this application a “ recombination event ” is understood to mean a meiotic crossing - over . as used herein , the terms “ introgression ”, “ introgressed ” and “ introgressing ” refer to both a natural and artificial process whereby genes of one species , variety or cultivar are moved into the genome of another species , variety or cultivar , by crossing those species . the process may optionally be completed by backcrossing to the recurrent parent . “ genetic engineering ”, “ transformation ” and “ genetic modification ” are all used herein as synonyms for the transfer of isolated and cloned genes into the dna , usually the chromosomal dna or genome , of another organism . as used herein , the term “ molecular marker ” refers to an indicator that is used in methods for visualizing differences in characteristics of nucleic acid sequences . examples of such indicators are restriction fragment length polymorphism ( rflp ) markers , amplified fragment length polymorphism ( aflp ) markers , single nucleotide polymorphisms ( snps ), microsatellite markers ( e . g . ssrs ), sequence - characterized amplified region ( scar ) markers , cleaved amplified polymorphic sequence ( caps ) markers or isozyme markers or combinations of the markers described herein which defines a specific genetic and chromosomal location . as used herein , the term “ plant part ” indicates a part of the tomato plant , including single cells and cell tissues such as plant cells that are intact in plants , cell clumps and tissue cultures from which tomato plants can be regenerated . examples of plant parts include , but are not limited to , single cells and tissues from pollen , ovules , leaves , embryos , roots , root tips , anthers , flowers , fruits , stems shoots , and seeds ; as well as pollen , ovules , leaves , embryos , roots , root tips , anthers , flowers , fruits , stems , shoots , scions , rootstocks , seeds , protoplasts , calli , and the like . as used herein , the term “ population ” means a genetically heterogeneous collection of plants sharing a common genetic derivation . as used herein , the term “ tomato ” means any plant , line or population formerly known under the genus name of lycopersicon including but not limited to lycopersicon cerasiforme , lycopersicon cheesmanii , lycopersicon chilense , lycopersicon chmielewskii , lycopersicon esculentum ( now solanum lycopersicum ), lycopersicon hirsutum , lycopersicon parviflorum , lycopersicon pennellii , lycopersicon peruvianum , lycopersicon pimpinellifolium , or solanum lycopersicoides . the newly proposed scientific name for lycopersicon esculentum is solanum lycopersicum . similarly , the names of the wild species may be altered . l . pennellii has become solanum pennellii , l . hirsutum may become s . habrochaites , l . peruvianum may be split into s . ‘ n . peruvianum ’ and s . ‘ callejon de huayles ’, s . peruvianum , and s . corneliomuelleri , l . parviflorum may become s . neorickii , l . chmielewskii may become s . chmielewskii , l . chilense may become s . chilense , l . cheesmaniae may become s . cheesmaniae or s . galapagense , and l . pimpinellifolium may become s . pimpinellifolium ( solanacea genome network ( 2005 ) spooner and knapp ). it is especially noted that s . habrochaites can be defined as a tomato species that carries hairy fruits , while s . lycopersicum is a tomato species carrying hairless fruits . as used herein , the term “ variety ” or “ cultivar ” means a group of similar plants that by structural or genetic features and / or performance can be distinguished from other varieties within the same species . a “ cultivated plant ” is defined herein as a plant exhibiting agronomically desirable characteristics . the term is used in contrast to the term “ wild ”, which indicates a variety that is of no immediate commercial interest due to undesirable traits . s . habrochaites can be defined as a tomato species that is of no immediate commercial interest due to undesirable traits ( hairy fruits ). a genetic region conferring parthenocarpy derived from s . habrochaites as defined herein is claimed in plants wherein the region is not in its genetic background . the term “ natural genetic background ” is used herein to indicate the original genetic background of the genetic element . such a background may for instance be the genome of a seed - bearing wild accession of tomato . for instance , the parthenocarpy - conferring genetic elements of the present invention were found at specific locations on chromosomes 4 , 5 and / or 12 of solanum habrochaites lyc 4 / 78 . as an example , the solanum habrochaites lyc 4 / 78 represents the natural genetic background of the qtls on chromosomes 4 , 5 and / or 12 of solanum habrochaites lyc 4 / 78 . a a method that involves the transfer of dna comprising the parthenocarpy - conferring genetic element , or a parthenocarpy - conferring part thereof , from chromosomes 4 of solanum habrochaites lyc 4 / 78 to the same position on chromosome 4 of another tomato species , most notably s . lycopersicum , will result in that parthenocarpy - conferring genetic elements , or said parthenocarpy - conferring genetic part thereof , not being in its natural genetic background . the term “ functional sterile ” is used herein in its art - recognized meaning . functional sterility is considered a form of a more general property of that occurs in tomato called auto - sterility , which can occur in two types , i . e : male sterile : self pollination is not possible because of the absence of viable pollen ( ms ) or degenerated stamens ( s1 , stamenless ). when male sterility were to be introduced in a commercial seed hybrid tomato ( seed ), the grower has to sow double the amount of seed and to remove before planting the 50 % of heterozygous ms pk plants , recognizable by a marker gene for ms . this is not fully possible by overcrossing problems . functional sterile ; viable pollen is present but cannot reach the pistil due to some morphological deviation of the flowers . functional sterility ( fs ) itself can also be distinguished in four different types , i . e . : ps - type : an exerted style phenomenon as a result of strong twisting and shorting of the stamens ; this property generally provides for easy self pollination and lower receptivity of the style , which makes it not very suitable for hybrid seed production ; ps - 2 - type : a non opening anther bags type successfully used in hybrid seed production ; ex - type : exerted style over the stamens easy self pollination and low receptivity of the sigma make it less suitable for hybrid seed production ; and short style - type : the stigma is located below the anthers , the main disadvantage is its high level of self pollination . hybrids are the product of a cross between genetically unlike parents . the development of hybrids in a plant breeding program requires , in general , the development of homozygous inbred lines , the crossing of these lines , and the evaluation of the crosses . most plant breeding programs combine the genetic backgrounds from two or more inbred lines or various other broad - based sources into breeding pools from which new inbred lines are developed by selfing and selection of desired phenotypes . hybrids can also be used as a source of plant breeding material or as source populations from which to develop or derive new plant lines . the expression of a trait in a hybrid may exceed the midpoint of the amount expressed by the two parents , which is known as hybrid vigor . plant breeding techniques known in the art include , but are not limited to , recurrent selection , pedigree breeding , restriction length polymorphism enhanced selection , genetic marker enhanced selection and transformation . inbred lines may for instance be derived from hybrids by using said methods as pedigree breeding and recurrent selection breeding . newly developed inbreds are crossed with other inbred lines and the hybrids from these crosses are evaluated to determine which of those have commercial potential . pedigree breeding is a system of breeding in which individual plants are selected in the segregating generations from a cross on the basis of their desirability judged individually and on the basis of a pedigree record . recurrent selection is a breeding method based upon intercrossing selected individuals followed by continuing cycles of selection and intercrossing to increase the frequency of desired alleles in the population . recurrent selection may for instance be performed by backcross breeding , which involves system of breeding whereby recurrent backcrosses are made to one of the parents of a hybrid , accompanied by selection for a specific character or characters . the backcross being the cross of a hybrid to either of its parents . backcrossing can for instance be used to transfer a specific desirable trait that is present in a donor plant line to another , superior plant line ( e . g . an inbred line ) that lacks that trait . the first step of this process involves crossing the superior plant line ( recurrent parent ) to a donor plant line ( non - recurrent parent ), that carries the appropriate gene ( s ) for the trait in question . the progeny of this cross is then mated back to the superior recurrent parent followed by selection in the resultant progeny for the desired trait to be transferred from the non - recurrent parent . after five or more backcross generations with selection for the desired trait and for the germplasm inherited from the recurrent parent , the progeny will be homozygous for loci controlling the characteristic being transferred , but will be like the superior parent for essentially all other genes . the last backcross generation is then selfed to give pure breeding progeny for the gene ( s ) being transferred . a hybrid developed from inbreds containing the transferred gene ( s ) is essentially the same as a hybrid developed from the same inbreds without the transferred gene ( s ). a general description of breeding methods commonly used for acquiring different traits in various crops , including tomato , can be found in reference books such as e . g ., allard , r . w . ( 1960 ) principles of plant breeding ; simmonds , n . w . ( 1979 ) principles of crop improvement ; sneep , j . et al ., ( 1979 ) tomato breeding ( p . 135 - 171 ) in : breeding of vegetable crops , mark j . basset , ( 1986 , editor ), the tomato crop : a scientific basis for improvement , by atherton , j . g . & amp ; j . rudich , ( 1986 , editors ); plant breeding perspectives ; fehr , ( 1987 ) principles of cultivar development theory and technique ). field crops are bred through techniques that take advantage of the plant &# 39 ; s method of pollination . a plant is self - pollinated if pollen from one flower is transferred to the same or another flower of the same plant . a plant is cross - pollinated if the pollen comes from a flower on a different plant . plants that have been self - pollinated and selected for type for many generations become homozygous at almost all gene loci and produce a uniform population of true breeding progeny . a cross between two different homozygous lines produces a uniform population of hybrid plants that may be heterozygous for many gene loci . a cross of two plants each heterozygous at a number of gene loci will produce a population of hybrid plants that differ genetically and will not be uniform . tomato ( lycopersicon esculentum l . or garden tomato ) belongs to the solanaceae ( nightshade ) family , genus solanum , subgenus lycopersicon . other important solanaceae include potato ( solanum tuberosum ) and aubergine or eggplant ( solanum melongena ). all varieties in the species l . esculentum are self - pollinating . most other species in the subgenus lycopersicon , such as l . pimpinellifolium ( currant tomato ), l . hirsutum ( hairy tomato ) and l . peruvianum ( peruvian tomato ), are cross - pollinating . preferably , inbred breeder lines of l . esculentum are therefore male sterile in order to prevent genetic changes due to undesired self pollination . advantageously costs of seed production are reduced in such male sterile plants . the development of a hybrid tomato variety in a tomato plant breeding program generally involves three steps : ( 1 ) the selection of plants from various germplasm pools for initial breeding crosses ; ( 2 ) the selfing of the selected plants from the breeding crosses for several generations to produce a series of inbred lines , which , although different from each other , breed true and are highly uniform ; and ( 3 ) crossing the selected inbred lines with unrelated inbred lines or wild species of tomato to produce the hybrid progeny ( f1 ). during the inbreeding process in tomato , the vigor of the lines generally decreases . vigor is restored when an inbred line is crossed with another tomato plant ( e . g . another inbred or wild variety ) to produce the hybrid progeny ( f1 ). an important consequence of the homozygosity and homogeneity of the inbred lines is that the hybrid created by crossing a defined pair of inbreds will always be the same . once the inbreds that create a superior hybrid have been identified , a continual supply of the hybrid seed can be produced using these inbred parents and the hybrid tomato plants can then be generated from this hybrid seed supply . there are many important factors to be considered in the art of plant breeding , such as the ability to recognize important morphological and physiological characteristics , the ability to design evaluation techniques for genotypic and phenotypic traits of interest , and the ability to search out and exploit the genes for the desired traits in new or improved combinations . the objective of commercial tomato hybrid line development resulting from a tomato plant breeding program is to develop new inbred lines to produce hybrids that combine to produce high yields and superior agronomic performance . even though the primary trait breeders seek is yield , many other major agronomic traits are of importance in hybrid combination and have an impact on yield or otherwise provide superior performance in hybrid combinations . such traits include high crop potential , resistance to diseases including insect pests , resistance to stress such as drought and heat stress , and flavor , color shape and shelf life of the tomato fruits . in addition , the lines per se must have acceptable performance for parental traits such as seed yields and pollen production , which affect ability to provide parental lines in sufficient quantity and quality for hybridization . these traits have been shown to be under genetic control and many if not all of the traits are affected by multiple genes . for the production of the hybrid tomato plant , any inbred lycopersicon esculentum line may be developed by conventional breeding methods , comprising continuous selfing and selection of various breeding lines to combine the genes of these lines in a homozygous line . pedigree selection based on resistance against soil - borne pathogens and root and stem diseases , large size , firmness and color of the fruit as well as favourable root and stem development may then be applied for a number of subsequent generations to yield the mentioned inbred parent line . the inbred line is then preferably self - pollinated and planted for a sufficient number of generations to ensure the uniformity and phenotypic stability of its traits characteristic of its homozygous genotype . when no variant traits are observed , the features are stable . within solanum , ils have been developed for solanum pennellii la716 ( eshed et al . 1994 ), s . habrochaites la1777 ( monforte et al . 2000a ) and solanum lycopersicoides la2951 ( canady et al . 2005 ). such populations have shown to be extremely helpful in the identification of quantitative traits ( eshed et al . 1995 ; rousseaux et al . 2005 ), fine mapping of qtls ( fridman et al . 2004 ; monforte et al . 2001 ; monforte et al . 2000b ) and qtl cloning ( frary et al . 2000 ; fridman et al . 2000 ; ku et al . 2001 ). currently , one s . habrochaites la1777 il population exists in a determinate growing s . lycopersicum e6203 ( monforte et al . 2000a ). herein we describe the development of a second il population of s . habrochaites , now based on introgressions from s . habrochaites lyc 4 / 78 in the background of the indeterminate growing cultivated tomato s . lycopersicum cv . moneymaker , and the use of the lines in the production of seedless , parthenocarpic tomato plants . the plants of the present invention are preferably male sterile . male sterility may be present in a certain cross , such as the functional male sterlity found in line drs 5 . 1 . alternatively , male sterility may be introduced by using lines that contain the ps - 2 gene that confers functional male sterility as donor plants , and introgressing the gene into the desired plant line . functional male sterility is an important trait for the production of hybrid seeds . among the genes coding for functional male sterility in tomato is the positional sterility gene ps - 2 . ps - 2 is monogenic recessive , confers non - dehiscent anthers and is the most suitable for practical uses . markers for molecular - assisted selection ( mas ) have been developed ( gorguet et al ., 2006 . theor . appl . genet , 113 ( 8 ): 1437 - 1448 . this was done in an f2 segregating population derived from the interspecific cross between a functionally male sterile line ( ps - 2 / ps - 2 ; solanum lycopersicum ) and a functionally male fertile line ( s . pimpinellifolium ). the ps - 2 locus was found to reside in a 1 . 65 cm interval delimited by markers t0958 and t0635 on the short arm of chromosome 4 . this region also contains many cos markers , which may be useful in mas . a method of the present invention may make use of a method for producing a seedless plant , for instance as described in detail in ep1428425 , wherein an fs / pk - complex plant may be produced by a method comprises the following steps , further discussed therebelow : a . crossing an “ original seedless parent ” as defined herein with a “ original non seedless parent ” as defined herein to provide a non - seedless f1 generation ; b . self - pollinating the f1 generation thus obtained to provide a further generation , herein referred to as the f2 generation . c1 . selecting any plant ( s ) of the f2 thus obtained with a seedless phenotype and causing these seedless plants to self - pollinate , to provide a first f3 generation ; as well as c2 . selecting any plants of the f2 thus obtained with a functionally sterile phenotype , and causing these plants to self - pollinate in order to provide a second f3 generation ; d . selecting any plants of the first or second f3 generation with a seedless phenotype ; e . causing the plants of the first or second f3 generation with a seedless phenotype to self - pollinate in order to provide an f4 generation f . causing the plants of the f4 generation thus obtained which have a seedless phenotype to self - pollinate in order to provide an f5 generation ; and optionally causing the plants of the f5 generation thus obtained which have a seedless phenotype to self - pollinate in order to provide an f6 generation . it was reported in ep1428425 that usually , by the f5 generation , and in particular by the f6 generation obtained in step e ), the pk , fs complex in the plants thus obtained will have sufficiently stabilized , i . e . become “ fixated ”, for the tomato plant to be used as a pk , fs parent in the invention , or to be used as a starting plant or line for obtaining other ( lines of ) pk , fs parents , i . e . by crossing in further properties or by means of backcrosses . as the f3 , f4 , f5 , f6 and further generations have a seedless phenotype - or in the case of the “ second f3 generation ” at least a functionally sterile phenotype — obtaining the f4 , f5 , f6 and further generations , as well as maintaining the pk , fs parent lines for production of the seedless hybrids , will require human intervention as defined hereinbelow . this requirement for human intervention to provide a further generation is also generally referred to herein as “ causing self - pollination ”. it was reported in ep1428425 that the f2 will usually only contain at most about 1 or 2 seedless plants in 100 f2 plants , but may also provide no seedless plants , depending upon the original seedless parent and in particular the original non - seedless parent used . even when seedless f2 plants are obtained , it was found that the amount thereof ( i . e . 1 - 5 %) is significantly less than the 8 . 25 % ( i . e . 1 plant out of 16 ) that was to be expected according to mendelian principles if the presence of double recessive pat - 2 and ps - 2 genes by itself were sufficient to provide a seedless phenotype . this shows that the cross with the original non - seedless parent apparently introduces some — probably dominant — genes , alleles or other genetic factors that negatively influence the occurrence of the seedless phenotype in the f2 . the f2 was found to usually contain some functionally sterile plants , i . e . usually about 10 - 15 plants out of 100 , again depending upon the original seedless parent and in particular the original non - seedless parent . this again is less than the 25 % that was to be expected according to mendelian principles if the presence of double recessive ps - 2 by itself were sufficient to provide a functionally sterile phenotype . this shows that also the presence of the desired functionally sterile phenotype is determined by a complex of genetic factors . the method described in ep1428425 further involves that the seedless plants from the f2 are selected and caused to self - pollinate , so as to provide an f3 , herein referred to as the “ first f3 generation ”. it was reported that , despite the seedless phenotype of the f2 plant , sometimes not all f3 plants thus obtained will show the seedless phenotype of the f2 plant , but can form 0 - 100 %, and more often form only about 10 - 20 % of the f3 plants . this supposedly confirmed that the seedless phenotype in this f2 plants is caused by a complex of genes ( i . e . the pk , fs complex of the invention ), and not by homozygote recessive pat - 2 and ps - 2 genes alone , as in the original seedless parent . it supposedly also showed that in the f2 , the pk , fs complex is not fixated enough — i . e . genetically not homogenous enough — to provide completely seedless offspring . because of this , the seedless f2 plants obtained as above were also not suited for use as a pk , fs parent in the invention described in ep1428425 . the plants of the first f3 generation that show the seedless phenotype were selected , and caused to self - pollinate so as to provide an f4 . again , it was usually found that not all f4 plants obtained from the seedless f3 plants will show the seedless phenotype : the amount of seedless f4 plants may vary from 0 - 100 %, and is usually about 10 - 20 % of all f4 plants . also , not all f4 plants were found to be seedless under all environmental conditions . this again supposedly showed that the pk , fs complex has not yet become sufficiently fixated in these f3 of f4 plants for them to be used as pk , fs parents in the invention described in ep1428425 . the seedless plants from the f4 were then again caused to self - pollinate to provide an f5 , and said the seedless plants from the f5 were caused to self - pollinate to produce an f6 . again , in the f5 and sometimes also in the f6 , some non - seedless plants were obtained because supposedly the pk , fs complex was not yet sufficiently fixated in the seedless f4 or f5 , respectively . usually , by the f6 generation , the pk , fs complex in the seedless f6 plants was considered to be sufficiently stable , so that all seedless f6 plants exclusively provide seedless f7 plants when caused to self - pollinate . this also supposedly indicated that the f6 inbreds thus obtained could be used as pk , fs parents in the invention described in ep1428425 . if the f7 still provided some non - seedless plants , the f7 may again be caused to self - pollinate to provide an f8 , etc ., until a generation is obtained in which the pk , fs complex is sufficiently fixated . however , this is usually not required and also not preferred . also , if by the f9 and in particular by the f10 generation , the pk , fs complex has still not become sufficiently fixated , it will usually be assumed that this inbred line cannot be used as an pk , fs parent line in the invention described in ep 1428425 . generally , only a small amount of the seedless f2 plants will “ make it ” to the f6 , depending upon the original seedless parent but in particular the original non - seedless parent used . also , in generating the f6 , some selection pressure may be applied in order to test the stability and reliability of the seedless phenotype under all environmental conditions . for instance , factors such as light , temperature can be used to “ test ” and / or fixate the stability of the seedless phenotype of the f3 , f4 , f5 or f6 . besides the seedless f2 plants , also the f2 plants that only show a phenotype of functional sterility are caused to self - pollinate , so as to provide an f3 generation , herein referred to as the “ second f3 generation ”. this second f3 generation will usually comprise essentially all functionally sterile plants , and may comprise some seedless plants , i . e . about 1 - 3 out of 40 f3 plants ( which can be easily recognized and selected because they are the only ones in this second f3 that will grow fruits ). if so , these seedless f3 plants are caused to self - pollinate to provide an f4 , followed by an f5 and f6 , and optionally an f7 and f8 , etc ., essentially as described for the first f3 generation . again , not all seedless plants of the second f3 generation will make it to the f6 , again depending upon the original seedless parent and in particular the original non - seedless parent used . in the above methodology , for a given combination of original seedless parent and original non - seedless parent , it is possible that no seedless plants are obtained in the f2 , and only few functionally sterile plants . these functionally sterile f2 plants are then caused to self - pollinate . however , if in the f3 thus obtained , again no seedless plants are found , it will usually be assumed that this particular combination of original seedless parent and original non - seedless parent cannot be used to provide a pk , fs parent according to the invention . a possible explanation for this may be that the original non - seedless parent used did not contain all genetic factors ( i . e . genes , alleles or other factors ) necessary to “ complete ” the pk , fs complex , relative to the genes already present in the original seedless parent used . the invention therefore in further aspects relates to cultivation material for tomatoes such as seed or seedlings ( optionally in a container ), as well as seedless tomatoes obtained and / or obtainable as described hereinabove , and / or suited for use in the method ( s ) described herein . the parthenocarpic tomatoes according to the invention can also be processed further in a manner known per se to tomato products , in particular food products , which may or may not be in a form ready or suited for final use . in this respect , the tomatoes according to the invention have the advantage that they can be processed directly , without a further step for removing the seeds / pips in the production process . the invention in a further aspect therefore relates to products , in particular food products , obtained from the seedless tomatoes according to the invention , as well as to a method for obtaining said food products , in which the tomatoes are processed to these products without a separate step for removing the seeds . such a method can therefore — inter alia — comprise pureeing or mashing in another way of the tomatoes , optionally followed by incorporating or adding further desired ingredients , and packaging the tomato product thus obtained , without seeds or the residues thereof , in suitable containers for storage , transport or sale , in which said method does not comprise a step for removing any pips / seeds between the mashing of the tomatoes and the packaging of the product . the genetic elements as disclosed herein provide male sterility as a result of which fertilization of the seed set is absent . the methods and plants of the present invention are in addition to being parthenocarpic also preferable male sterile , most preferably functionally sterile , such as positionally sterile . moreover , the genetic elements as disclosed herein provide for parthenocarpy , the phenomenon whereby fruit set occurs without fertilization . in addition to providing parthenocarpy and / or male starility , the genetic alements as disclosed herein provide for an increase in fruit yield . an advantage of the parhtenocarpic plants of the invention is that they produce fruits having a higher content of fruit flesh ( expressed as dry weight ) compared to non - seedless tomatoes harvested at a corresponding time , i . e . 1 , 2 , 5 , 10 , 25 , or 35 %, or more , based on total weight of the tomato ( i . e . on average about 5 . 5 to 6 . 5 gram dry matter for the seedless tomatoes compared to about 4 . 5 to 5 . 5 gram dry matter for non - seedless tomatoes , on a total weight at harvest of about 110 - 120 gram ). in terms of dry matter yield , this means an increase of at least about 20 % ( in which furthermore the dry matter of the non - seedless tomatoes will still include the pips ). by using male sterility , the skilled person can now discover parthenocarpy in plants . normally , parthenocarpy can remain undetected ( is masked ) when seed set does occur . this hidden parthenocarpy can be found by crossing descendants of a cross between a parthenocarpic plant and a plant having hidden parthenocarpy and testing the cross for fruit set without seed . preferably , the introgressions as defined herein are present in homozygous form . the present invention now also provides for the possibility of providing a method to clone gene ( s ) that are responsible for the parthenocarpic phenotype derived from s . habrochaites lyc4 / 78 . in order to make for a more effective breeding process , involving the selection of candidate parent plants having the proper genetic constitution , it is necessary to have at one &# 39 ; s disposal one or more genetic markers that indicate the presence of that genetic constitution in at least one of the candidate parent plants . this process , which includes crossing of the selected plants and is termed marker assisted selection ( mas ), efficiently transfers favourable parental alleles from a donor to a recipient population and ensures that breeding is no longer dependent on coincidence and is economically much more effective in terms of development costs . seeds of solanum habrochaites lyc 4 / 78 ( hereafter referred as lyc 4 / 78 ; seed batch of 1978 ) were obtained from the gene bank located at the institute for plant genetics and crop plant research , gatersleben , germany . seeds of solanum lycopersicum cv . moneymaker ( hereafter referred as moneymaker ) were obtained from the seed bank of de ruiter seeds r & amp ; d bv , bergschenhoek , the netherlands . an interspecific cross between moneymaker and lyc 4 / 78 was made to produce f 1 seeds . the f 1 seeds were grown into f 1 plants . f 2 seeds , derived from selfing one f 1 plant were sown to obtain an f 2 population of 174 individuals . a bc 2 ( backcross 2 ) population of 59 individuals was generated by two rounds of backcrossing with moneymaker as the recurrent and female parent . using mas , bc 2 , bc 3 , and bc 4 genotypes were selected containing one of the two identified parthenocarpy - conferring genetic elements and some bc 2 were self pollinated to produce bc 2 s 1 seeds ( see fig2 ). as stated above , one f 1 plant was self pollinated to obtain f 2 seeds and backcrossed to sl to obtain bc 1 seeds . the f 2 seeds were initially used for the construction of the genetic linkage map . the bc 1 seeds were used to develop the ils ( fig3 ). genomic dna was isolated from two young ( rolled up ) leaves using a cetyltrimethylammonium bromide ( ctab ) based protocol according to steward and via ( 1993 ), adjusted for high throughput dna isolation using one ml micronic tubes ( micronic bv , lelystad , the netherlands ) and grounded using a retsch 300 mm shaker at maximum speed ( retsch bv , ochten , the netherlands ). the aflp analysis ( vos et al ., 1995 ) of f 2 , bc 2 , bc 3 , bc 4 and bc 2 s 1 populations was done and the aflp fragments were resolved on a li - cor 4200 dna sequencer , essentially following the method published by myburg ( myburg et al . 2001 ). the selective pst primer was labeled with an ird 700 or ird 800 fluorescent label . aflp gel images were scored using the aflp - quantar pro software package ( keygene bv , wageningen , the netherlands ). the following ten primer combinations and adapter sequences were used for genotyping : p14m48 , p14m49 , p14m50 , p14m60 , p14m61 , p15m48 , p18m50 , p18m51 , p22m50 and p22m51 , as described by bai et al . ( 2003 ). variation in fruit size ( yield fruit weight , fruit hight , fruit diameter ) and seed set ( ss ), were observed in plants obtained from crosses individuals of the f 2 population derived from the cross between moneymaker x lyc 4 / 78 ( see table 1 ). plants that were seedless ( ss —) and exhibited normal fruit sizes compared to control ( moneymaker [ sl ] bottom row ) were considered parthenocarpic . a genetic linkage map was calculated for an f 2 population ( n = 174 ) derived from the cross of moneymaker x lyc 4 / 78 . ten primer combinations were used to obtain 218 amplified fragment length polymorphism ( aflp ) markers in the f 2 population ( n = 174 ). a total of 69 markers ( 31 . 7 %) could be readily scored co - dominantly , thus allowing the calculation of an integrated f 2 genetic linkage map . marker analysis performed on bc 2 , bc 3 and bc 2 s 1 genotypes allowed the addition of an additional 145 aflp markers . a total of 102 out of these 145 additional aflp markers were previously not scored due to complexity of the f 2 gels . the overall genetic linkage map consisted of 315 aflp markers of 14 linkage groups and has a total length of 958 cm . since co - migrating aflp markers within a species are generally allele specific , co - linearity with other aflp linkage maps was used to assign linkage groups to chromosomes . some moneymaker specific aflp markers were in common with the genetic linkage maps as published ( haanstra et al . 1999 ; bai et al . 2003 ) and therefore some linkage groups could be assigned to chromosomes , including the linkage groups harboring the identified parthenocarpy - conferring genetic elements . to improve the linkage map in the parthenocarpy - conferring genetic elements intervals , diagnostic caps markers were added in these regions based on the published s . lycopersicum x l . pennellii map ( tanksley et al . 1992 ; haanstra et al . 1999 ). genomic dna was isolated from two young ( rolled up ) leaves using a ctab based protocol according to steward et al . ( 1993 ), adjusted for high throughput dna isolation using one ml micronic tubes ( micronic bv , lelystad , the netherlands ) and grounded using a retsch 300 mm shaker at maximum speed ( retsch bv , ochten , the netherlands ). aflp analysis ( vos et al . 1995 ) of each backcross and il was done and the aflp fragments were resolved on a li - cor 4200 dna sequencer , essentially following the method published by myburg ( 2001 ). the selective pst primer was labeled with an ird700 or ird 800 fluorescent label . aflp gel images were scored using the aflp quantar pro software package . primer and adapter sequences are described by bai et al ( 2003 ). sets of caps primers were obtained from the “ solanaceae genomics website ” or designed on sequences of genomic or cdna clones available from the same source . polymorphisms between s . habrochaites and s . lycopersicum were determined using the caps digestion approach described by brugmans et al ( 2003 ). marker sequences , pcr conditions , and specific restriction endonucleases used to genotype are presented in table 30 . pcr products were generally separated using a 2 . 5 % agarose gel . in table 31 the different digestion products which discriminate between s . lycopersicum and s . habrochaites are indicated for each of the markers of table 30 found in the qtls of interest . an introgression line ( il ) population of s . habrochaites lyc 4 / 78 ( sh ) in the genetic background of s . lycopersicum cv . moneymaker ( sl ) was developed . one f 1 plant derived from the cross between sl and sh was backcrossed to sl ( fig2 ). subsequently a random set of 14 bc 1 plants was backcrossed to sl to obtain a bc 2 progeny ( n = 59 ). all bc 2 plants were genotyped and a selected set was backcrossed to sl . this set was chosen in such a way that the combined introgressions covered as much as possible of the sh genome while selecting recombinants in such a way that each alien chromosome will be represented by three ils . this process of selection and backcrossing was repeated until bc 5 . 31 selected bc 5 plants , mainly containing one or two introgressions were self pollinated . up to 12 plants of each of the 31 bc 5 s 1 families were self pollinated and screened with aflp markers to obtain a bc 5 s 2 progeny ( n = 44 ) homozygous for the introgression . the markers of the 44 ils were screened once more and a core set of 30 ils was chosen . this core set represents the maximum coverage of the sh genome in as few as possible ils ( fig3 ). the core set consists of 15 ils harboring a single introgression , 10 ils containing two introgressions , 4 ils containing three introgressions while one il still contained four homozygous introgressions . on average each il contained 60 cm (= 5 . 2 %) of the sh genome and the length of the introgressions varied between 20 ( 1 . 7 %) and 122 cm ( 10 . 6 %). our il population covers 95 % of the length of the original f 2 linkage map . however , we realize this f 2 linkage map is not completely covering the genome . this is illustrated by additional caps analysis on chromosomes 3 ( top of the short arm ), 4 ( top of the short arm ), 5 ( long arm ) and 9 ( top of the short arm ) where caps markers revealed introgressions with no markers in the aflp based f 2 linkage map . the size of these introgressions was estimated based on the high density rflp map ( tanksley et al . 1992 . since no previous screening was applied for the top of chromosome 3 the il for this region is heterozygous . plants , selected to be homozygous sh for il5 - 1 and 5 - 2 failed to set seeds therefore these lines were maintained in their heterozygous state . no ils containing the top of the short arm of chromosome 8 and the bottom of the long arm of chromosome 2 were present . introgressions , on the top of the short arm of chromosome 7 and 9 are present in multiple ils . selection for the top of chromosome 9 was only possible after development of caps markers specific for this region . in the present description above il5 - 1 is referred to as drs5 . 1 . the following tables provide detailed information on the various rflp and cos - ii markers as indicated in the various linkage maps and as indicated for association with the qtls of the present invention . the information of tables 10 - 29 was directly copied in from the sol genomic network ( sgn ) database hosted at cornell university , version of 7 oct . 2005 . the sequence of several markers found to be associated with the parthenocarpic trait through il library screening as described herein were sequenced and provide for detailed information on the sequence of s . habrochaites lyc4 / 78 in the region of the parthenocarpy - 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