Patent Application: US-40782203-A

Abstract:
a method for determining the capability of an arterivirus to replicate in a permissive cell is disclosed . the method includes determining an amino acid at a position that corresponds to an amino acid of a protein of a porcine reproductive and respiratory syndrome virus . the invention also discloses a method for determining the capability of an arterivirus to replicate in a green monkey cell line . the invention further discloses a method for producing arterivirus in a green monkey cell line wherein the virulence of the arterivirus is maintained and the virus yield is increased . methods for determining the attenuation of an arterivirus and for attenuating the virulence of the arterivirus by changing amino acids are further disclosed .

Description:
porcine alveolar lung macrophages ( pams ) were maintained in mca - rpmi - 1640 medium containing 5 % fbs , 100 u / ml penicillin and 100 u / ml streptomycin . cl2621 - cells were propagated in eagle &# 39 ; s minimal essential medium supplemented with hanks salts ( gibco brl ), 10 % fbs , 100 u / ml penicillin , 100 u / ml streptomycin , 1 . 5 % sodium bicarbonate and 1 % l - glutamine . serial passage of the recombinant prrsvs vabv688 and vabv437 was performed as described . ( meulenberg et al , 1998 ). challenge virus lv - ter huurne , a virulent european wild type isolate of prrsv , was isolated during the 1991 epizootic from a clinical case of prrsv in the netherlands and propagated on pams . ( wensvoort et al , 1991 ). sdsu # 73 , a virulent american wild type isolate of prrsv ( passage 3 on cl2621 - cells ), was kindly provided by dr . e . vaughn ( boehringer ingelheim , animal health , ames , iowa ) and propagated on ma - 104 cells . virus titers ( expressed as 50 % tissue culture infective doses ( tcid 50 ) per ml ) were determined on pams by end point dilution ( wensvoort et al , 1986 ) and calculated according to reed and muench . ( reed et al , 1938 ). inoculation of pigs with prrsv recombinants and test on their in vivo stability . three groups of three 8 - week - old dutch landrace / yorkshire ( ly ) spf pigs , tested free of antibodies against prrsv , were inoculated on the same day intranasally with 2 ml of a recombinant virus stock of passage 5 each containing a titer of 105 tcid 50 / ml . the three groups were housed in isolated pens . experimental procedures and animal management procedures were undertaken according to the dutch legislation animal experiments . serum samples were collected at day 0 , 2 , 4 , 7 , 9 , 11 , 14 , 16 , 18 and 21 . at day 21 , the pigs were sacrificed . for each recombinant virus , two groups of five 8 - week - old dutch ly spf pigs , lacking antibodies against prrsv , were immunized intramuscularly ( half - way between the pinna of the right ear and the cranial ridge of the right shoulder blade ) with 2 ml of a virus stock of 10 5 tcid 50 / ml . all groups were housed in isolated pens . experimental procedures and animal management procedures were undertaken according to the dutch legislation animal experiments . in order to determine the transmission of recombinant virus from the inoculated pigs , one naive sentinel pig was introduced into each group of inoculated pigs 24 hours post - vaccination and sacrificed 28 days thereafter . at day 28 post - vaccination , two animals were separated from one group of each mutant and challenged intranasally with 2 ml 10 5 tcid 50 / ml lv - ter huurne . similarly , two animals were separated from the other group and challenged with 2 ml 10 5 tcid 50 / ml sdsu # 73 . the two challenged animals joined the other three vaccinates after 24 hours . at 28 days after challenge , all pigs were sacrificed . a schematic representation of the amino acid changes is depicted in fig1 a and 1b . to confirm the efficacy of challenge , two non - inoculated animals were either inoculated intranasally with 2 ml 10 5 tcid 50 / ml lv - ter huurne or sdsu # 73 . these challenged animals joined three sentinel animals after 24 hours and were monitored for two weeks starting at the moment of challenge . serum samples were collected for all animals three times a week starting on day 0 . during the experiment , the animals were observed daily for signs of disease , i . e ., fever ( a rectal body temperature higher than 39 . 7 ° c . ), diarrhea and respiratory distress . the genetic stability of the recombinant viruses in pigs was tested by inoculation of pams with serum from these pigs taken at the last - virus - positive day , followed by sequence analysis of the viral rna . in short , as soon as cytopathogenic effect ( cpe ) was detected , the culture supernatant was harvested and the viral rna was isolated as described ( 16 ). the rna was reverse transcribed with primer lv76 ( 5 ′- tctaggaattctagacgatcg ( t ) 40 - 3 ′ ( seq id no : 1 ); antisense ; nucleotide ( nt ) 15088 ). the region flanking the introduced mutations was amplified by pcr using primers lv9 ( 5 ′- ctgccgcccgggcaagtgcc - 3 ′ ( seq id no : 2 ); sense ; nt 11746 ) and lv22 ( 5 ′- cataataaccctcaagttg - 3 ′ ( seq id no : 3 ); antisense ; nt 12715 ) for vabv688 . nt numbers are based on the sequence of the lv isolate as deposited in genbank , accession number m96262 ( seq id no : 4 ). the amplified fragments were analyzed in 2 % agarose gels and the pcr fragments were excised from the gel and purified with spinx columns ( costar ). sequence analysis of the fragments was performed using the antisense primer of the pcr , except for vabv688 , for which primer lv24 ( 5 ′- aatcggatcctcaggaagcgtgcacactgatga - 3 ′ ( seq id no : 5 ); antisense ; nt 12419 ) was used . the prism ready dye deoxy terminator cycle sequencing kit and the abi prism 310 genetic analyzer ( perkin elmer ) were used to determine the sequences . 10 5 pams / 96 mm 2 were seeded in 96 - wells plates and after one day , 50 μl of a 10 - fold and 100 - fold serial dilution of each serum sample was used to infect pams . after 48 hours , 25 μl of the culture supernatant was transferred to new pams seeded 16 - 24 hours prior to incubation . after 24 hours , the medium was discarded , the cells were washed with 0 . 05 m nacl , dried and frozen for ipma . ( wensvoort , 1986 ). virus titers were determined by end - point dilution on pams . ( wensvoort et al ., 1986 ). samples containing virus titers below the detection level ( 1 , 8 ) were considered negative . from the area under the curve of titer against time , the integrated virus titers after vaccination were determined . statistical analysis was performed by the one - sided paired student &# 39 ; s t - test . results were considered statistically significant when the p - value was ≦ 0 . 05 . immunostaining of pams was performed according to the method described . ( wensvoort et al , 1986 ). the expression of the eu - and us - prrsv n protein was detected with monoclonal antibody ( mab ) 122 . the presence of antibodies against prrsv in pig sera was determined by elisa ( idexx , westbrook , minn ., us ). to identify important genomic regions for adaptation , the field isolate lelystad virus was passaged 6 times on cl2621 cells followed by plaque purification for 3 times on the cl2621 cells and the virus was designated lv4 . 2 . 1 . the entire sequence of the genome of the cell line - adapted strain lv4 . 2 . 1 was determined . rna isolation , rt - pcr and pcr was performed yielding overlapping cdna fragments of about 1 . 5 kb in length . all fragments were cloned into pgem - t vector of promega using the ta - cloning strategy . when sequencing the whole sequence , every nucleotide was determined at least twice . to exclude mutations introduced by pcr - mismatches , a third or even a fourth cdna - construct was made . when compared to the field strain lelystad virus , 27 nucleotide differences in the coding region were identified and no nucleotide differences were identified in the 5 ′ and 3 ′ non - translated region . after translation , 8 amino acid differences resulted ( table 1 ). it was concluded that the observed difference in growth properties between lv4 . 2 . 1 and the field virus strain lelystad virus was due to a different amino acid sequence in a non - structural protein , a structural protein or in a combination of two or more amino acid changes . construction of full length cdna with non - structural or structural gene mutations . a set of full length constructs ( pabv647 , 688 , 689 , and 690 ) was constructed based on pabv437 in which mutations were introduced . in vitro transcribed full length rnas were transfected into the non - permissive bhk - 21 cells using lipofectin as a cationic reagent . after 24 h , the supernatants ( p0 ) were transferred to marc - 145 cells and after 24 h to 48 h , immunostaining was performed using mab 122 . 17 directed against the n protein to detect the effect of the introduced mutations . recombinant viruses containing substitutions responsible for adaptation showed cell line adapted phenotypes on marc - 145 cells similar to that of the positive control lv4 . 2 . 1 . for the positive control , pams were infected with the same amount of p0 to show infection on the primary target cell of prrsv . the supernatant p0 of pabv437 and lv4 . 2 . 1 virus served as positive controls in infection experiments . two full length cdna clones were constructed in which either mutations in the non - structural or in the structural region were introduced and designated as pabv647 and pabv690 , respectively ( fig1 b ). in vitro analysis of these two constructs revealed that the rna - transcript of pabv690 resulted in a phenotype similar to lv4 . 2 . 1 . it was concluded that the mutations responsible for adaptation are located in the structural part of the genome . the next step was to determine whether the mutations in gp2a or in gp5 had any effect on the observed cell line - adaptation . pabv688 contains two amino acid differences in gp2a , while pabv689 contains only the amino acid change in gp5 ( fig1 b ). after performing the screening assay , pabv688 with the two mutations in gp2a resulted in a cell line - adapted phenotype similar to lv4 . 2 . 1 and the gp5 recombinant pabv689 did not . it was concluded that adaptation to the cell line is in majority caused by the two mutations in gp2a . two amino acid differences in gp2a were studied . two new constructs were generated . pabv772 contains a phenylalanine at amino acid 88 and pabv773 contains a leucine at position 95 in gp2a ( fig1 b ). in vitro , both substitutions were better adapted for growth in marc - 145 cells than the positive control pabv437 , but the substitutions caused less cell pathologic effects ( cpe ) than vabv688 . a multi - step and a one - step growth curve were performed to investigate the effect of the introduced amino acid residues on the infectivity process . the po - medium of the recombinant viruses derived from pabv437 / 688 / 772 / 773 were harvested , transferred to pams and passaged three times ( p3 ) in parallel with lv4 . 2 . 1 to increase the amount of virus . for further growth characterization , the presence of the introduced mutations was confirmed by sequence analysis and the tcid50 / ml was determined ( data not shown ). multi - step growth curves on both pams and marc - 145 were performed using a multiplicity of infection ( m . o . i ) of 0 . 05 with vabv437 / 688 / 772 / 773 and lv4 . 2 . 1 . 10 6 cells were used in growth curves per 2 cm 2 . at different time points , virus was harvested and stored until the virus titer in tcid50 / ml was determined . introduction of a phenylalanine and a leucine in gp2a at amino acid 88 and 95 , respectively , had a positive effect on the growth characteristics of a european strain of prrsv on marc - 145 cells ( fig2 a ). no differences were observed when performing multi - step growth curves on pams ( fig2 b ). to secure the observed results , a total amount of 10 6 marc - 145 cells per 2 cm 2 were infected with a m . o . i . of 0 . 1 with supernatant p3 of vabv437 / 688 / 772 / 773 and lv4 . 2 . 1 . after 12 h , an immunostaining was performed using a prrsv - specific mab ( 122 . 17 ) against the nucleocapsid protein and the total amount of positive cells were counted per 2 cm 2 ( fig2 c ). based on the results , it was concluded that both amino acid residues at position 88 and 95 in the minor glycoprotein gp2a of prrsv are important for adaptation to marc - 145 cells . the arteriviral reproduction process in permissive cells can be defined in seven distinct steps . the first two processes are called the viral entry and include ( a ) attachment of the virus to the cell surface of pams or ma - 104 ( or derivatives thereof ) and ( b ) penetration of the virus through the cell membrane . next , ( c ) the arterivirus needs to be uncoated in the cytoplasm before ( d ) replication , transcription and translation can occur . the next step is ( e ) rna encapsidation and assembly , followed by ( f ) release of mature virions into the extracellular space which occurs before ( g ) spread of the virus can take place . using a 12 h - time point in the one - step growth curves and knowing that the viral reproduction cycle of prrsv takes about 10 hours , the observed difference in the amount of positive stained cells is caused by an increased number of cells being successfully infected ( a - d ). the observed difference is not due to a difference in encapsidation of the rna , release of the newly produced virions or spread of the virus through a monolayer of marc - 145 cells ( e - g ). since a role of glycoprotein gp2a in release of - viral rna into the cytoplasm during uncoating ( c ) or in transcription and translation ( d ) is most unlikely , it was concluded that both residues , or a domain in which both residues are present , are important for the entry process , i . e ., attachment and / or penetration of the virus ( a and b ). in recombinant vabv688 , amino acids 88 and 95 of the minor envelope glycoprotein gp2a were mutated and resulted in improved growth on marc - 145 cells . this characteristic facilitates the production of virus . in cell culture , these recombinant viruses were shown to be genetically stable and able to grow to virus titers sufficient to perform animal experiments . the properties of these prrsv recombinants were studied with regard to safety and protective efficacy in animal experiments . the properties of the recombinant viruses were compared with those of virus derived from an infectious cdna copy , vabv437 . this virus is identical to wild type virus except for a paci - restriction site and is , therefore , assumed to have similar properties as wild type virus . first , the in vivo genetic stability of vabv688 was determined in 8 - week - old pigs . subsequently , the immunogenicity , attenuation and efficacy of these viruses were tested in a homologous and heterologous immunization - challenge experiment in young pigs . in the first experiment , the genetic stability of the prrsv recombinants was determined in vivo . sequence analysis of viral rna isolated from serum of all pigs inoculated from 14 days post inoculation ( dpi ) with the recombinant viruses at the last virus - positive day was performed . sequence analysis of the fragments obtained by rt - pcr showed that the introduced mutations were present and that no additional changes were introduced in the domain of gp2a indicating that the recombinant viruses were genetically stable in vivo . in the second experiment , it was determined whether pigs inoculated with the prrsv recombinants and , subsequently , the sentinel pigs introduced into the inoculated groups had seroconverted . the presence of prrsv antibodies was measured in idexx elisa . antibodies were detected in pigs inoculated with recombinant virus ( i . e ., elisa sample - to - positive ( s / p ) ratio & gt ; 0 . 4 ) which indicated proper exposure of the viruses to the animals . virus transmission is one of the characteristics of virulence . the sentinels had seroconverted at day 14 ( vabv688 ) indicating that transmission of virus from the inoculated animals to these sentinels and , thus , conservation of the virulence . to determine the presence of virus in the serum of inoculated animals , virus isolation was performed for all sera collected . from the virus positive sera , virus titers were determined ( fig3 a ). all viruses induced viremia in the pigs and ranged from 2 dpi to 25 dpi . to determine spread of the recombinant virus to non - inoculated pigs , one sentinel animal was introduced into each inoculated group at 24 hours after inoculation . the virus titration of all virus positive sera indicated that the maximum virus titers did not differ between inoculated pigs and sentinels ( data not shown ). challenge of virus - inoculated animals with homologous and heterologous prrsv and transmission of challenge virus . to test whether inoculation with the recombinant virus protects pigs against wild type prrsv , the inoculated pigs were challenged with eu - and us - prrsv . pigs inoculated with vabv437 remained virus negative after challenge with lv - ter huurne . only one animal of the vabv688 - inoculated pigs became virus positive for one day . after challenge with sdsu # 73 , all inoculated animals became viremic . all inoculated , unchallenged animals remained virus negative after they were united with their group members that were challenged with lv - ter huurne . in pigs inoculated with vabv688 , viremia was induced after the inoculated pigs were united with sdsu # 73 - challenged pigs . in pigs used as challenge control , viremia was induced in all lv - ter huurne and sdsu # 78 - challenged pigs as well as in all sentinel animals ( data not shown ). after inoculation with the virus , no severe clinical signs of the disease were monitored . only moderate rectal temperature increases were noted in all inoculated groups ( data not shown ). after challenge with lv - ter huurne in vabv688 - inoculated animals and all sdsu # 73 - challenged animals , no temperature increases were measured . attenuation of prrs mutant virus strains with mutations in gp5 and / or orflab in addition to the mutations in gp2a ( lv4 . 2 . 1 ). comparison of virulence of 3 prrs virus strains in an animal model . the clinical signs of prrsv may differ among strains after exposure of pigs to prrsv . the us prrsv strains often cause respiratory and reproductive problems , whereas eu prrsv strains predominantly cause reproductive problems . ( steverink et . al . 1999 ). respiratory signs and the extent of lung involvement may vary per strain and are not consistently reproduced under experimental conditions . an infection model should include parameters to study and quantify the virulence of the virus based on frequency and severity of clinical signs , viral parameters ( viremia , virus excretion and virus transmission ) and seroconversion . furthermore , duration , height and frequency of viremia and viral excretion after vaccination could also be important parameters to study vaccine safety . the same parameters after prrsv challenge of vaccinated animals are important for vaccination efficacy since reducing virus shedding and virus transmission among pigs is an important target aiming at the control of prrsv . therefore pigs of 6 to 8 weeks old and 6 months old were infected with 3 different prrsv strains , i . e ., lv - ter huurne , sdsu # 73 and lv4 . 2 . 1 . the animals were conventional landrace pigs obtained from a prrsv - free farm in denmark and born from prrsv - unvaccinated sows . the pigs were free from antibodies against prrsv as measured by an elisa ( idexx ). viremia was first detected in all pigs at 3 dpi except for the 6 month - old group infected with lv4 . 2 . 1 where viremia was first detected at 7 dpi and in one animal of this group , no viremia was detected . in 6 - 8 week - old pigs , viremia was detected until 42 dpi with a maximum frequency of positive animals of 88 % and a virus titer ranging from 3 , 4 , 7 , 10 , 11 or 14 dpi and from 2 . 1 - 2 . 6 . in 6 month - old pigs , viremia was detected until 28 dpi with a maximum frequency of 65 % positive animals per time - point and virus titer ranging from 0 . 7 - 1 . after 24 dpi , both lv - ter huurne and sdsu # 73 were intermittently detected in the serum of pigs . lv4 . 2 . 1 - infected pigs showed a shorter duration of viremia which was last detected at 21 dpi . the frequency of positive pigs at 7 and 10 dpi was significantly lower , had a maximum of 41 % ( p & gt ; 0 . 05 ) and a lower 10 log virus titer as compared to lv - ter huurne and sdsu # 73 . kinetics of viremia was significantly different at 14 dpi for lv - ter huurne - infected pigs and sdsu # 73 - infected pigs . more pigs of 6 - 8 weeks excrete virus ( maximum of positive animals per time - point was 50 %) than pigs of 6 months ( maximum of 37 %). furthermore , 6 - 8 week - old pigs showed a higher virus 10 log titer ( between 0 . 2 and 1 . 9 ) in tonsillar swabs than 6 month - old pigs ( ranging from 0 . 0 to 0 . 3 ) at day 3 , 4 , 7 , 10 or 11 and 14 . per time - point , more pigs infected with lv - ter huurne excrete virus ( maximum 100 %) as compared to lv4 . 2 . 1 ( maximum 17 %) and sdsu # 73 ( maximum 50 %). in addition , all pigs infected with lv - ter huurne excreted virus , but not all pigs infected with lv4 . 2 . 1 or sdsu # 73 excreted virus . the 10 log virus titer in tonsillar swabs was higher for lv - ter huurne - infected pigs ranging from 0 . 0 to 3 . 0 , while the 10 log titer of the lv4 . 2 . 1 infected group was 0 . 0 and the 10 log titer of the sdsu # 73 infected pigs ranged from 0 . 0 to 0 . 5 . at 14 dpi , pigs were still excreting virus . lv - ter huurne and sdsu # 73 appear to be the most virulent due to the occurrence of a high level of virus - positive pigs , a long duration of viremia of both virus strains , the instigation of most severe clinical signs of sdsu # 73 and a high level of virus excretion for lv - ter huurne . lv4 . 2 . 1 was less virulent since it showed less clinical signs and a low viremia and virus excretion . the reduced virulence of lv 4 . 2 . 1 was confirmed by impairment in its ability to cause reproductive problems for gestation sows as compared to lv - ter huurne . ( steverink et al . 1999 ). sows infected with lv - ter huurne and lv4 . 2 . 1 resulted in the same number of piglets , but the piglets of the sows infected with the higher virulent strain were weaker . in addition , the group infected with the higher virulent virus lv - ter huurne showed a higher frequency of virus positive piglets until 28 days post farrowing . ( steverink et al 1999 ). apparently , the lower virulence of lv4 . 2 . 1 is not related to macrophage infection since the growth curve of lv4 . 2 . 1 in vitro on macrophages is comparable to the growth curve of lv - ter huurne . bautista , e . m ., goyal , s . m ., yoon , i . j ., joo , h . s . & amp ; collins , j . e . ( 1993 ). comparison of porcine alveolar macrophages and cl 2621 for the detection of porcine reproductive and respiratory syndrome ( prrs ) virus and anti - prrs antibody . j vet diagn invest 5 , 163 - 5 . collins , j . e ., benfield , d . a ., christianson , w . t ., harris , l ., hennings , j . c ., shaw , d . p ., goyal , s . m ., mccullough , s ., morrison , r . b ., joo , h . s . & amp ; et al . ( 1992 ). isolation of swine infertility and respiratory syndrome virus ( isolate atcc vr - 2332 ) in north america and experimental reproduction of the disease in gnotobiotic pigs . j vet diagn invest 4 , 117 - 26 . duan , x ., nauwynck , h . j ., favoreel , h . w . & amp ; pensaert , m . b . ( 1998 ). identification of a putative receptor for porcine reproductive and respiratory syndrome virus on porcine alveolar macrophages . j virol 72 , 4520 - 3 . jusa , e . r ., inaba , y ., kouno , m . & amp ; hirose , o . ( 1997 ). effect of heparin on infection of cells by porcine reproductive and respiratory syndrome virus . am j vet res 58 , 488 - 91 . kreutz , l . c . ( 1998 ). cellular membrane factors are the major determinants of porcine reproductive and respiratory syndrome virus tropism . virus res 53 , 121 - 8 . meulenberg , j . j ., bos de ruijter , j . n ., van de graaf , r ., wensvoort , g . & amp ; moormann , r . j . ( 1998 ). infectious transcripts from cloned genome - length cdna of porcine reproductive and respiratory syndrome virus . j virol 72 , 380 - 7 . reed l j , muench h . a simple method of estimating fifty percent end points . am j hyg 1938 ; 27 : 709 - 16 . snijder , e . j . & amp ; meulenberg , j . j . ( 1998 ). the molecular biology of arteriviruses . j gen virol 79 , 961 - 79 . wensvoort g , terpstra c , boonstra j , bloemraad m , van zaane d . production of monoclonal antibodies against swine fever virus and their use in laboratory diagnosis . vet microbiol 1986 ; 12 : 101 - 8 . wensvoort , g ., de kluyver , e . p ., luijtze , e . a ., den besten , a ., harris , l ., collins , j . e ., christianson , w . t . & amp ; chladek , d . ( 1992 ). antigenic comparison of lelystad virus and swine infertility and respiratory syndrome ( sirs ) virus . j vet diagn invest 4 , 134 - 8 . wensvoort , g ., terpstra , c ., pol , j . m ., ter laak , e . a ., bloemraad , m ., de kluyver , e . p ., kragten , c ., van buiten , l ., den besten , a ., wagenaar , f . & amp ; et al . ( 1991 ). mystery swine disease in the netherlands : the isolation of lelystad virus . vet q 13 , 121 - 30 . steverink , p . j . g . m ., pol , j . m . a ., bos - de ruijter , j . n . a . & amp ; meulenberg , j . j . m . virulence of vabv414 , the virus derived from the infectious cdna clone of lelystad virus , for third trimester pregnant gilts . proc . prrs & amp ; aujeszky &# 39 ; s disease 1999 , 119 . met gln trp gly his cys gly val lys ser ala ser cys ser trp thr pro asp val pro gln phe ala val lys his pro leu gly met phe trp tyr gln thr met glu his ser gly gln ala ala trp lys gln val val gly glu ala thr leu thr lys leu ser gly leu asp ile val thr his phe gln his leu ala ala val glu ala asp ser cys arg phe leu ser gln tyr asn thr thr leu asp arg val glu leu ile phe pro thr pro gly thr arg pro lys leu thr asp phe arg gln trp leu ile ser val val leu trp leu arg ile pro ala leu arg tyr val phe gly phe his met arg cys ser his lys leu gly arg phe leu thr pro his ser cys ile cys glu 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