PATENT CLAIM ANALYSIS

Application Number: 16039276
Application Type: Utility
Filing Date: 2018-07
Publication Date: 2018-11
Patent Classification: ["702", "019000"]

Abstract:
Embodiments of a method and/or system for characterizing one or more appendix-related conditions can include determining a microorganism dataset associated with a set of subjects; and/or performing a characterization process associated with the one or more appendix-related conditions, based on the microorganism dataset, where performing the characterization process can additionally or alternatively include performing an appendix-related characterization process for the one or more appendix-related conditions, and/or determining one or more therapies.

Claim (Index 22):
The method of  claim 21 , wherein the user microbiome features comprise user microbiome composition features associated with at least one of  Gemella  (genus),  Veillonella atypica  (species),  Dialister pneumosintes  (species),  Lactobacillus crispatus  (species), Phyllobacteriaceae (family),  Aquabacterium  (genus),  Anaeroglobus  (genus),  Anaeroglobus geminatus  (species),  Ochrobactrum  (genus),  Mobiluncus curtisii  (species),  Actinomyces neuii  (species),  Anaerococcus lactolyticus  (species),  Lactobacillus johnsonii  (species), Verrucomicrobiales (order), Verrucomicrobia (phylum), Verrucomicrobiae (class), Verrucomicrobiaceae (family),  Dialister succinatiphilus  (species),  Atopobium  sp. F0209 (species),  Corynebacterium freiburgense  (species),  Lactobacillus  sp.  Akhmrol  (species),  Anaerococcus  sp. 9401487 (species),  Mesorhizobium  (genus),  Lactobacillus reuteri  (species),  Megasphaera  sp. UPII 199-6 (species),  Lactobacillus  sp. C30An8 (species),  Peptococcus  sp. S9 Pr-12 (species),  Helcococcus seattlensis  (species), Neisseriaceae (family),  Neisseria  mucosa (species),  Aggregatibacter aphrophilus  (species),  Bacteroides uniformis  (species),  Bacteroides vulgatus  (species),  Parabacteroides distasonis  (species),  Megasphaera  (genus), Proteobacteria (phylum), Micrococcaceae (family),  Streptococcus thermophilus  (species),  Streptococcus parasanguinis  (species),  Clostridium  (genus),  Actinomyces odontolyticus  (species), Actinomycetales (order), Actinomycetaceae (family), Betaproteobacteria (class),  Gemella  morbillorum (species),  Rothia  (genus), Pseudomonadales (order), Oxalobacteraceae (family), Burkholderiales (order),  Gemella  sp. 933-88 (species), Micrococcales (order),  Bacteroides acidifaciens  (species),  Mogibacterium  (genus),  Bacteroides  sp. AR20 (species),  Bacteroides  sp. AR29 (species), Burkholderiaceae (family), Erysipelotrichaceae (family), Xanthomonadales (order), Pseudomonadaceae (family),  Actinomyces  sp. oral strain Hal-1065 (species),  Roseburia intestinalis  (species), Porphyromonadaceae (family),  Shuttleworthia  (genus), Clostridia (class), Clostridiales (order), Peptostreptococcaceae (family), Peptococcaceae (family), Carnobacteriaceae (family),  Dialister  sp. E2_20 (species), Neisseriales (order),  Megasphaera genomosp . C1 (species),  Moryella  (genus), Synergistetes (phylum), Erysipelotrichia (class), Erysipelotrichales (order), Clostridiales Family XIII. Incertae Sedis (family),  Roseburia  sp. 11SE39 (species),  Bacteroides  sp. D22 (species), Synergistia (class), Synergistales (order), Synergistaceae (family),  Lactobacillus  sp. TAB-22 (species),  Flavonifractor  (genus), Sutterellaceae (family),  Anaerostipes  sp. 5_1_63FAA (species),  Streptococcus  sp. 2011_Oral_MS_A3 (species),  Veillonella  sp. 2011_Oral_VSA_D3 (species),  Finegoldia  sp. S9 AA1-5 (species),  Fretibacterium  (genus),  Staphylococcus  sp. 334802 (species),  Peptoclostridium  (genus),  Intestinibacter  (genus),  Acinetobacter  (genus),  Klebsiella  (genus),  Bacteroides thetaiotaomicron  (species),  Butyrivibrio  (genus),  Fusobacterium necrogenes  (species),  Herbaspirillum  (genus),  Herbaspirillum seropedicae  (species),  Pediococcus  (genus),  Finegoldia magna  (species),  Blautia hansenii  (species),  Enterococcus faecalis  (species),  Lactococcus lactis  (species),  Bacillus  (genus),  Clostridioides difficile  (species),  Blautia coccoides  (species),  Erysipelatoclostridium ramosum  (species),  Weissella confusa  (species),  Lactobacillus plantarum  (species),  Lactobacillus paracasei  (species),  Bifidobacterium adolescentis  (species),  Bifidobacterium breve  (species),  Bifidobacterium dentium  (species),  Bifidobacterium animalis  (species),  Bifidobacterium pseudocatenulatum  (species),  Bacteroides ovatus  (species),  Peptoniphilus lacrimalis  (species),  Anaerococcus vaginalis  (species),  Rahnella  (genus),  Bilophila wadsworthia  (species),  Sneathia sanguinegens  (species),  Succiniclasticum  (genus),  Sporobacter  (genus),  Pseudobutyrivibrio ruminis  (species),  Weissella  (genus),  Bacteroides stercoris  (species),  Lactobacillus rhamnosus  (species),  Pantoea  (genus),  Holdemania  (genus),  Holdemania filiformis  (species), Thermoanaerobacterales (order),  Bifidobacterium gallicum  (species),  Bifidobacterium pullorum  (species), Leuconostocaceae (family),  Eggerthella lenta  (species),  Papillibacter  (genus),  Anaerostipes caccae  (species),  Pseudoflavonifractor capillosus  (species),  Anaerovorax  (genus),  Parasporobacterium  (genus),  Parasporobacterium paucivorans  (species),  Oscillospira  (genus),  Oscillospira guilliermondii  (species),  Actinomyces turicensis  (species),  Anaerosinus  (genus),  Sneathia  (genus),  Brevibacterium paucivorans  (species),  Lactobacillus  sp. CR-609S (species), Thermoanaerobacteraceae (family), Bacillaceae (family),  Gelria  (genus), Acidobacteriales (order),  Bacteroides massiliensis  (species), Rhodocyclales (order),  Anaerofustis stercorihominis  (species),  Alistipes finegoldii  (species), Oscillospiraceae (family),  Peptoniphilus  sp. 2002-38328 (species),  Hespellia  (genus),  Bacteroides  sp. 35AE37 (species),  Marvinbryantia  (genus),  Anaerosporobacter mobilis  (species),  Anaerofustis  (genus),  Catabacter  (genus),  Flavonifractor plautii  (species),  Proteiniphilum  (genus),  Roseburia faecis  (species),  Streptococcus  sp. S16-11 (species),  Bacteroides  sp. 4072 (species),  Alistipes shahii  (species),  Bacteroides intestinalis  (species),  Lactonifactor longoviformis  (species),  Bifidobacterium tsurumiense  (species),  Bacteroides dorei  (species),  Bacteroides xylanisolvens  (species),  Cronobacter  (genus),  Alloscardovia  (genus),  Alloscardovia omnicolens  (species),  Lactonifactor  (genus), Catabacteriaceae (family),  Adlercreutzia equolifaciens  (species),  Adlercreutzia  (genus),  Alistipes  sp. EBA6-25c12 (species),  Bacteroides  sp. EBA5-17 (species),  Oscillibacter  (genus),  Gordonibacter pamelaeae  (species),  Alistipes  sp. NML05A004 (species),  Parasutterella excrementihominis  (species),  Mitsuokella  sp. DJF_RR21 (species),  Butyricimonas  (genus),  Bifidobacterium stercoris  (species),  Alistipes indistinctus  (species),  Gordonibacter  (genus),  Anaerostipes hadrus  (species),  Klebsiella  sp. B12 (species),  Alistipes  sp. RMA 9912 (species),  Anaerosporobacter  (genus),  Bacteroides faecis  (species),  Blautia  sp. Ser5 (species),  Bacteroides chinchillae  (species),  Bilophila  sp. 4_1_30 (species), Caldicoprobacteraceae (family),  Enterobacter  sp. UDC345 (species),  Bifidobacterium biavatii  (species),  Peptoniphilus  sp. 1-14 (species),  Alistipes  sp. HGB5 (species),  Bacteroides  sp. SLC1-38 (species),  Klebsiella  sp. SOR89 (species),  Enterococcus  sp. C6 I11 (species),  Pseudoflavonifractor  (genus),  Bacteroides  sp. dnLKV9 (species),  Megasphaera  sp. BV3C16-1 (species),  Faecalibacterium  sp. canine oral taxon 147 (species),  Varibaculum  sp. CCUG 45114 (species),  Butyricimonas  sp. 214-4 (species),  Anaerostipes rhamnosivorans  (species),  Negativicoccus  sp. S5-A15 (species), [ Collinsella] massiliensis  (species),  Corynebacterium  sp. jw37 (species),  Roseburia  sp. 499 (species),  Dialister  sp. S7MSR5 (species),  Anaerococcus  sp. S8 87-3 (species),  Finegoldia  sp. S8 F7 (species),  Murdochiella  sp. S9 PR-10 (species),  Peptoniphilus  sp. S9 PR-13 (species),  Bacteroides  sp. J1511 (species),  Corynebacterium  sp. 713182/2012 (species),  Rahnella  sp. BSP18 (species),  Intestinimonas  (genus),  Robinsoniella  sp. KNHs210 (species),  Candidatus Soleaferrea  (genus),  Butyricimonas faecihominis  (species),  Senegalimassilia  (genus),  Peptoniphilus  sp. DNF00840 (species),  Romboutsia  (genus),  Coprobacter secundus  (species), Moraxellaceae (family),  Moraxella  (genus),  Eikenella  (genus),  Eikenella corrodens  (species),  Vagococcus  (genus),  Phyllobacterium  (genus),  Veillonella dispar  (species),  Sutterella wadsworthensis  (species),  Johnsonella ignava  (species),  Leptotrichia hofstadii  (species),  Leptotrichia shahii  (species),  Capnocytophaga  sp. AHN9756 (species),  Bergeyella  sp. AF14 (species),  Olsenella  sp. F0004 (species),  Phyllobacterium  sp. T50 (species),  Actinomyces  sp. ICM47 (species),  Fusobacterium  sp. AS2 (species), Leptotrichiaceae (family),  Comamonas  (genus),  Peptostreptococcus  (genus),  Actinomyces viscosus  (species),  Bifidobacterium  (genus), Bifidobacteriaceae (family), Rhodospirillaceae (family), Bifidobacteriales (order),  Thalassospira  (genus),  Bifidobacterium longum  (species),  Aggregatibacter  (genus),  Streptococcus  sp. 11aTha1 (species),  Flavobacterium  (genus),  Cronobacter sakazakii  (species), Sphingobacteriia (class), Brucellaceae (family), Sphingobacteriales (order),  Akkermansia  (genus),  Peptoniphilus  sp. gpac018A (species),  Citrobacter  sp. BW4 (species),  Staphylococcus aureus  (species),  Brevundimonas  (genus), Caulobacteraceae (family), Caulobacterales (order),  Anaerobacillus alkalidiazotrophicus  (species),  Anaerobacillus  (genus),  Acinetobacter  sp. WB22-23 (species),  Pseudomonas  (genus),  Prevotella  (genus),  Faecalibacterium prausnitzii  (species),  Cutibacterium acnes  (species), Veillonellaceae (family),  Leptotrichia  (genus),  Phascolarctobacterium  (genus), Flavobacteriaceae (family),  Delftia  (genus), Flavobacteriia (class), Prevotellaceae (family), Lachnospiraceae (family),  Dorea  (genus), Flavobacteriales (order),  Parabacteroides  (genus),  Streptococcus  sp. oral taxon G63 (species), Acidaminococcaceae (family),  Veillonella  sp. CM60 (species),  Staphylococcus  sp. C912 (species),  Fusicatenibacter saccharivorans  (species),  Fusicatenibacter  (genus),  Parabacteroides merdae  (species),  Collinsella aerofaciens  (species),  Propionibacterium  sp. KPL1844 (species),  Methylobacterium longum  (species),  Staphylococcus  sp. C5116 (species),  Enterococcus raffinosus  (species),  Veillonella  (genus), Gammaproteobacteria (class),  Enterococcus  sp. SI-4 (species), Enterobacteriales (order), Enterobacteriaceae (family),  Odoribacter  (genus), Ruminococcaceae (family), Desulfovibrionaceae (family),  Phascolarctobacterium faecium  (species), Desulfovibrionales (order),  Faecalibacterium  (genus), Deltaproteobacteria (class),  Methanobrevibacter  (genus),  Odoribacter splanchnicus  (species),  Subdoligranulum variabile  (species),  Methanobrevibacter smithii  (species),  Lactobacillus  sp. 7_1_47FAA (species), Methanobacteriaceae (family),  Bilophila  (genus), Methanobacteriales (order), Clostridiaceae (family), Euryarchaeota (phylum), Methanobacteria (class),  Kluyvera  (genus),  Kluyvera georgiana  (species),  Blautia faecis  (species),  Collinsella  (genus),  Prevotella timonensis  (species),  Anaerostipes  (genus),  Anaerostipes  sp. 3_2_56FAA (species), Coriobacteriaceae (family),  Megasphaera  sp. DNF00912 (species),  Lactobacillus  mucosae (species),  Bacteroides fragilis  (species),  Streptococcus  equinus (species),  Bacteroides plebeius  (species),  Propionibacterium  sp. MSP09A (species),  Streptococcus pasteurianus  (species),  Anaerovibrio  sp. 765 (species),  Akkermansia muciniphila  (species),  Veillonella rogosae  (species),  Blautia glucerasea  (species),  Acidaminococcus intestini  (species),  Propionibacterium granulosum  (species),  Fusobacterium  sp. CM21 (species),  Pediococcus  sp. MFC1 (species),  Turicibacter sanguinis  (species),  Sarcina ventriculi  (species),  Streptococcus  sp. BS35a (species),  Fusobacterium ulcerans  (species),  Morganella morganii  (species),  Bacteroides eggerthii  (species),  Bacteroides coprocola  (species),  Bacteroides  sp. CB57 (species),  Veillonella  sp. MSA12 (species),  Asaccharospora irregularis  (species),  Lactobacillus  sp. C412 (species),  Parabacteroides  sp. 157 (species),  Epulopiscium  (genus),  Streptococcus  (genus),  Propionibacterium  (genus),  Anaerovibrio  (genus),  Staphylococcus  (genus),  Turicibacter  (genus),  Alloprevotella  (genus),  Morganella  (genus),  Acidaminococcus  (genus),  Succinivibrio  (genus),  Anaerofilum  (genus),  Asaccharospora  (genus),  Finegoldia  (genus),  Anaerococcus  (genus), Streptococcaceae (family), Propionibacteriaceae (family), Staphylococcaceae (family), Sphingobacteriaceae (family), Succinivibrionaceae (family), Dermabacteraceae (family), Corynebacteriaceae (family), Selenomonadales (order), Lactobacillales (order), Bacillales (order), Pleurocapsales (order), Aeromonadales (order), Bacilli (class), Negativicutes (class), Cyanobacteria (phylum),  Bacteroides finegoldii  (species),  Alistipes putredinis  (species), Actinobacteria (class), and Lactobacillaceae (family), and wherein determining the appendix-related characterization comprises determining the appendix-related condition for the user for the appendix-related condition based on the user microbiome composition features.

Metadata:
- Claim Count in Document: 53.0
- Percentile: 95.0
- Lexical Diversity: 2.11111
- Patent Class: 702.0
- Transitional Phrase Type: none
- Component Type: 0
- Foreign Priority: False
- Related Applications: ['15997654', '15844360', '15845190', '15844139', '15497072']

Analysis Scores:
- 35 USC 101 Eligibility (BERT): 0.2905911634081518
- 35 USC 102 Novelty (BERT): 0.5690813364295836
- Combined Prediction Score: 0.318440180710295
- Mean Citation Score: 435.8800719999999
- Max Citation Score: 492.2887
- Similarity Product: 374.3841547082365

Labels:
- Claim Label 101: 0
- Claim Label 102: 1
- Claim Label 103: 1
- Claim Label 112: 0
- Combined Label: 0
- Label 101 Adjusted: 0

Dataset: test