PATENT CLAIM ANALYSIS

Application Number: 16039276
Application Type: Utility
Filing Date: 2018-07
Publication Date: 2018-11
Patent Classification: ["702", "019000"]

Abstract:
Embodiments of a method and/or system for characterizing one or more appendix-related conditions can include determining a microorganism dataset associated with a set of subjects; and/or performing a characterization process associated with the one or more appendix-related conditions, based on the microorganism dataset, where performing the characterization process can additionally or alternatively include performing an appendix-related characterization process for the one or more appendix-related conditions, and/or determining one or more therapies.

Claim (Index 25):
The method of  claim 21 , wherein determining the user microbiome features comprises determining, based on the microorganism dataset, site-specific composition features associated with a gut site and at least one of Neisseriaceae (family),  Neisseria mucosa  (species),  Aggregatibacter aphrophilus  (species),  Bacteroides uniformis  (species),  Bacteroides vulgatus  (species),  Parabacteroides distasonis  (species),  Megasphaera  (genus), Proteobacteria (phylum), Micrococcaceae (family),  Streptococcus thermophilus  (species),  Streptococcus parasanguinis  (species),  Gemella  (genus),  Clostridium  (genus),  Actinomyces odontolyticus  (species), Actinomycetales (order), Actinomycetaceae (family), Betaproteobacteria (class),  Gemella morbillorum  (species),  Rothia  (genus),  Lactobacillus crispatus  (species), Pseudomonadales (order), Oxalobacteraceae (family), Burkholderiales (order),  Gemella  sp. 933-88 (species), Micrococcales (order),  Bacteroides acidifaciens  (species),  Mogibacterium  (genus),  Bacteroides  sp. AR20 (species),  Bacteroides  sp. AR29 (species), Burkholderiaceae (family), Erysipelotrichaceae (family), Xanthomonadales (order), Pseudomonadaceae (family),  Actinomyces  sp. oral strain Hal-1065 (species),  Roseburia intestinalis  (species), Porphyromonadaceae (family),  Shuttleworthia  (genus), Clostridia (class), Clostridiales (order), Peptostreptococcaceae (family), Peptococcaceae (family), Carnobacteriaceae (family),  Dialister  sp. E2_20 (species), Neisseriales (order),  Megasphaera genomosp . C1 (species),  Moryella  (genus), Synergistetes (phylum), Erysipelotrichia (class), Erysipelotrichales (order), Clostridiales Family XIII. Incertae Sedis (family),  Roseburia  sp. 11SE39 (species),  Bacteroides  sp. D22 (species), Synergistia (class), Synergistales (order), Synergistaceae (family),  Lactobacillus  sp. TAB-22 (species),  Flavonifractor  (genus), Sutterellaceae (family),  Anaerostipes  sp. 5_1_63FAA (species),  Streptococcus  sp. 2011_Oral_MS_A3 (species),  Veillonella  sp. 2011_Oral_VSA_D3 (species),  Finegoldia  sp. S9 AA1-5 (species),  Fretibacterium  (genus),  Staphylococcus  sp. 334802 (species),  Peptoclostridium  (genus),  Intestinibacter  (genus),  Acinetobacter  (genus),  Klebsiella  (genus),  Bacteroides thetaiotaomicron  (species),  Butyrivibrio  (genus),  Fusobacterium necrogenes  (species),  Herbaspirillum  (genus),  Herbaspirillum seropedicae  (species),  Pediococcus  (genus),  Finegoldia magna  (species),  Blautia hansenii  (species),  Enterococcus faecalis  (species),  Lactococcus lactis  (species),  Bacillus  (genus),  Clostridioides difficile  (species),  Blautia coccoides  (species),  Erysipelatoclostridium ramosum  (species),  Weissella confusa  (species),  Lactobacillus plantarum  (species),  Lactobacillus paracasei  (species),  Bifidobacterium adolescentis  (species),  Bifidobacterium breve  (species),  Bifidobacterium dentium  (species),  Bifidobacterium animalis  (species),  Bifidobacterium pseudocatenulatum  (species),  Bacteroides ovatus  (species),  Peptoniphilus lacrimalis  (species),  Anaerococcus vaginalis  (species),  Rahnella  (genus),  Bilophila wadsworthia  (species),  Sneathia sanguinegens  (species),  Succiniclasticum  (genus),  Sporobacter  (genus),  Pseudobutyrivibrio ruminis  (species),  Weissella  (genus),  Bacteroides stercoris  (species),  Lactobacillus rhamnosus  (species),  Pantoea  (genus),  Holdemania  (genus),  Holdemania filiformis  (species), Thermoanaerobacterales (order),  Bifidobacterium gallicum  (species),  Bifidobacterium pullorum  (species), Leuconostocaceae (family),  Eggerthella lenta  (species),  Papillibacter  (genus),  Anaerostipes caccae  (species),  Pseudoflavonifractor capillosus  (species),  Anaerovorax  (genus),  Parasporobacterium  (genus),  Parasporobacterium paucivorans  (species),  Oscillospira  (genus),  Oscillospira guilliermondii  (species),  Actinomyces turicensis  (species),  Anaerosinus  (genus),  Sneathia  (genus),  Brevibacterium paucivorans  (species),  Lactobacillus  sp. CR-609S (species), Thermoanaerobacteraceae (family), Bacillaceae (family),  Gelria  (genus), Acidobacteriales (order),  Bacteroides massiliensis  (species), Rhodocyclales (order),  Anaerofustis stercorihominis  (species),  Alistipes finegoldii  (species), Oscillospiraceae (family),  Peptoniphilus  sp. 2002-38328 (species),  Hespellia  (genus),  Bacteroides  sp. 35AE37 (species),  Marvinbryantia  (genus),  Anaerosporobacter mobilis  (species),  Anaerofustis  (genus),  Catabacter  (genus),  Flavonifractor plautii  (species),  Proteiniphilum  (genus),  Roseburia faecis  (species),  Streptococcus  sp. S16-11 (species),  Bacteroides  sp. 4072 (species),  Alistipes shahii  (species),  Bacteroides intestinalis  (species),  Lactonifactor longoviformis  (species),  Bifidobacterium tsurumiense  (species),  Bacteroides dorei  (species),  Bacteroides xylanisolvens  (species),  Cronobacter  (genus),  Alloscardovia  (genus),  Alloscardovia omnicolens  (species),  Lactonifactor  (genus), Catabacteriaceae (family),  Adlercreutzia equolifaciens  (species),  Adlercreutzia  (genus),  Alistipes  sp. EBA6-25c12 (species),  Bacteroides  sp. EBA5-17 (species),  Oscillibacter  (genus),  Gordonibacter pamelaeae  (species),  Alistipes  sp. NML05A004 (species),  Parasutterella excrementihominis  (species),  Mitsuokella  sp. DJF_RR21 (species),  Butyricimonas  (genus),  Bifidobacterium stercoris  (species),  Alistipes indistinctus  (species),  Gordonibacter  (genus),  Anaerostipes hadrus  (species),  Klebsiella  sp. B12 (species),  Alistipes  sp. RMA 9912 (species),  Anaerosporobacter  (genus),  Bacteroides faecis  (species),  Blautia  sp. Ser5 (species),  Bacteroides chinchillae  (species),  Bilophila  sp. 4_1_30 (species), Caldicoprobacteraceae (family),  Enterobacter  sp. UDC345 (species),  Bifidobacterium biavatii  (species),  Peptoniphilus  sp. 1-14 (species),  Alistipes  sp. HGB5 (species),  Bacteroides  sp. SLC1-38 (species),  Lactobacillus  sp.  Akhmrol  (species),  Klebsiella  sp. SOR89 (species),  Enterococcus  sp. C6 I11 (species),  Pseudoflavonifractor  (genus),  Bacteroides  sp. dnLKV9 (species),  Megasphaera  sp. BV3C16-1 (species),  Faecalibacterium  sp. canine oral taxon 147 (species),  Varibaculum  sp. CCUG 45114 (species),  Butyricimonas  sp. 214-4 (species),  Anaerostipes rhamnosivorans  (species),  Negativicoccus  sp. S5-A15 (species), [ Collinsella] massiliensis  (species),  Corynebacterium  sp. jw37 (species),  Roseburia  sp. 499 (species),  Dialister  sp. S7MSR5 (species),  Anaerococcus  sp. S8 87-3 (species),  Finegoldia  sp. S8 F7 (species),  Murdochiella  sp. S9 PR-10 (species),  Peptoniphilus  sp. S9 PR-13 (species),  Bacteroides  sp. J1511 (species),  Corynebacterium  sp. 713182/2012 (species),  Rahnella  sp. BSP18 (species),  Intestinimonas  (genus),  Robinsoniella  sp. KNHs210 (species),  Candidatus Soleaferrea  (genus),  Butyricimonas faecihominis  (species),  Senegalimassilia  (genus),  Peptoniphilus  sp. DNF00840 (species),  Romboutsia  (genus), and  Coprobacter secundus  (species), wherein determining the appendix-related characterization comprises determining the appendix-related characterization for the user for the appendix-related condition based on the site-specific composition features.

Metadata:
- Claim Count in Document: 53.0
- Percentile: 95.0
- Lexical Diversity: 2.11111
- Patent Class: 702.0
- Transitional Phrase Type: none
- Component Type: 0
- Foreign Priority: False
- Related Applications: ['15997654', '15844360', '15845190', '15844139', '15497072']

Analysis Scores:
- 35 USC 101 Eligibility (BERT): 0.2886633966704513
- 35 USC 102 Novelty (BERT): 0.5744213804115771
- Combined Prediction Score: 0.3172391950445639
- Mean Citation Score: 435.8800719999999
- Max Citation Score: 492.2887
- Similarity Product: 403.0851524434805

Labels:
- Claim Label 101: 0
- Claim Label 102: 1
- Claim Label 103: 1
- Claim Label 112: 0
- Combined Label: 0
- Label 101 Adjusted: 0

Dataset: test