Datasets:

rouskinlab
/

human_mRNA

Languages:
English
Tags:
chemistry
biology`
License:
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train
The dataset viewer is not available for this split.
Cannot extract the features (columns) for the split 'train' of the config 'default' of the dataset.
Error code:   FeaturesError
Exception:    ValueError
Message:      Not able to read records in the JSON file at hf://datasets/rouskinlab/human_mRNA@d2fcead39c6d53121c78341525c122fa9e2d90d0/data.json. You should probably indicate the field of the JSON file containing your records. This JSON file contain the following fields: ['ENSG00000004399.13', 'ENSG00000004799.8', 'ENSG00000005001.10', 'ENSG00000005020.13', 'ENSG00000005022.6', 'ENSG00000005073.6', 'ENSG00000005243.10', 'ENSG00000005812.11', 'ENSG00000006118.15', 'ENSG00000007520.4', 'ENSG00000008018.9', 'ENSG00000008056.14', 'ENSG00000008196.13', 'ENSG00000008438.5', 'ENSG00000009694.14', 'ENSG00000010319.7', 'ENSG00000011260.14', 'ENSG00000011426.11', 'ENSG00000011590.14', 'ENSG00000011677.13', 'ENSG00000013392.8', 'ENSG00000014123.10', 'ENSG00000014164.7', 'ENSG00000015676.18', 'ENSG00000016490.16', 'ENSG00000019549.13', 'ENSG00000019995.6', 'ENSG00000020633.19', 'ENSG00000024862.18', 'ENSG00000025772.8', 'ENSG00000026025.16', 'ENSG00000034693.15', 'ENSG00000049860.14', 'ENSG00000052723.12', 'ENSG00000057468.7', 'ENSG00000059378.13', 'ENSG00000060491.17', 'ENSG00000060762.19', 'ENSG00000062650.20', 'ENSG00000065613.15', 'ENSG00000066735.16', 'ENSG00000066777.9', 'ENSG00000067704.10', 'ENSG00000068394.11', 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'ENSG00000180611.7', 'ENSG00000180644.8', 'ENSG00000180667.11', 'ENSG00000180694.14', 'ENSG00000180745.5', 'ENSG00000180818.5', 'ENSG00000180875.5', 'ENSG00000180992.7', 'ENSG00000181026.15', 'ENSG00000181234.10', 'ENSG00000181418.8', 'ENSG00000181472.5', 'ENSG00000181541.6', 'ENSG00000181562.5', 'ENSG00000181616.10', 'ENSG00000181649.8', 'ENSG00000181656.7', 'ENSG00000181788.4', 'ENSG00000181817.6', 'ENSG00000181867.3', 'ENSG00000181915.5', 'ENSG00000182118.8', 'ENSG00000182154.8', 'ENSG00000182156.10', 'ENSG00000182179.13', 'ENSG00000182255.7', 'ENSG00000182329.14', 'ENSG00000182580.3', 'ENSG00000182636.8', 'ENSG00000182645.6', 'ENSG00000182674.6', 'ENSG00000182700.5', 'ENSG00000182752.10', 'ENSG00000182782.8', 'ENSG00000182858.14', 'ENSG00000182952.5', 'ENSG00000183087.15', 'ENSG00000183155.5', 'ENSG00000183260.7', 'ENSG00000183313.4', 'ENSG00000183340.7', 'ENSG00000183395.5', 'ENSG00000183396.4', 'ENSG00000183397.6', 'ENSG00000183423.12', 'ENSG00000183434.10', 'ENSG00000183463.6', 'ENSG00000183508.5', 'ENSG00000183530.14', 'ENSG00000183605.17', 'ENSG00000183631.5', 'ENSG00000183638.6', 'ENSG00000183640.6', 'ENSG00000183644.14', 'ENSG00000183684.8', 'ENSG00000183691.6', 'ENSG00000183726.11', 'ENSG00000183780.13', 'ENSG00000183783.7', 'ENSG00000183807.8', 'ENSG00000183808.12', 'ENSG00000183840.7', 'ENSG00000183864.5', 'ENSG00000184032.3', 'ENSG00000184163.3', 'ENSG00000184207.9', 'ENSG00000184260.6', 'ENSG00000184292.7', 'ENSG00000184350.11', 'ENSG00000184351.8', 'ENSG00000184363.10', 'ENSG00000184374.3', 'ENSG00000184471.9', 'ENSG00000184502.4', 'ENSG00000184530.9', 'ENSG00000184557.4', 'ENSG00000184574.10', 'ENSG00000184599.14', 'ENSG00000184678.11', 'ENSG00000184724.5', 'ENSG00000184735.7', 'ENSG00000184811.4', 'ENSG00000184845.4', 'ENSG00000184887.14', 'ENSG00000184895.8', 'ENSG00000184900.16', 'ENSG00000184922.15', 'ENSG00000184925.12', 'ENSG00000184933.6', 'ENSG00000184967.7', 'ENSG00000184995.7', 'ENSG00000185028.4', 'ENSG00000185056.10', 'ENSG00000185112.6', 'ENSG00000185127.7', 'ENSG00000185156.6', 'ENSG00000185272.14', 'ENSG00000185274.12', 'ENSG00000185290.4', 'ENSG00000185291.12', 'ENSG00000185304.16', 'ENSG00000185306.13', 'ENSG00000185338.7', 'ENSG00000185372.4', 'ENSG00000185448.12', 'ENSG00000185453.13', 'ENSG00000185565.12', 'ENSG00000185567.7', 'ENSG00000185608.9', 'ENSG00000185742.7', 'ENSG00000185761.11', 'ENSG00000185792.10', 'ENSG00000185909.15', 'ENSG00000185915.5', 'ENSG00000185955.5', 'ENSG00000185963.14', 'ENSG00000185972.6', 'ENSG00000185974.7', 'ENSG00000185989.11', 'ENSG00000186130.5', 'ENSG00000186193.9', 'ENSG00000186198.4', 'ENSG00000186222.5', 'ENSG00000186265.10', 'ENSG00000186352.9', 'ENSG00000186377.8', 'ENSG00000186395.9', 'ENSG00000186440.3', 'ENSG00000186462.9', 'ENSG00000186513.4', 'ENSG00000186562.8', 'ENSG00000186603.7', 'ENSG00000186675.7', 'ENSG00000186891.14', 'ENSG00000186930.4', 'ENSG00000186973.11', 'ENSG00000187003.7', 'ENSG00000187005.5', 'ENSG00000187026.3', 'ENSG00000187080.10', 'ENSG00000187325.5', 'ENSG00000187513.9', 'ENSG00000187516.7', 'ENSG00000187522.16', 'ENSG00000187566.6', 'ENSG00000187690.4', 'ENSG00000187701.5', 'ENSG00000187714.7', 'ENSG00000187808.5', 'ENSG00000187837.4', 'ENSG00000187840.5', 'ENSG00000187855.6', 'ENSG00000187866.10', 'ENSG00000187889.13', 'ENSG00000187908.20', 'ENSG00000187954.14', 'ENSG00000187957.8', 'ENSG00000187969.6', 'ENSG00000188038.8', 'ENSG00000188050.3', 'ENSG00000188095.6', 'ENSG00000188133.6', 'ENSG00000188277.10', 'ENSG00000188379.7', 'ENSG00000188408.5', 'ENSG00000188425.4', 'ENSG00000188483.8', 'ENSG00000188573.8', 'ENSG00000188581.9', 'ENSG00000188710.3', 'ENSG00000188729.7', 'ENSG00000188763.5', 'ENSG00000188803.15', 'ENSG00000188811.14', 'ENSG00000188921.14', 'ENSG00000188984.12', 'ENSG00000188996.5', 'ENSG00000189030.10', 'ENSG00000189037.8', 'ENSG00000189079.18', 'ENSG00000189108.13', 'ENSG00000189120.5', 'ENSG00000189181.5', 'ENSG00000189280.3', 'ENSG00000189299.7', 'ENSG00000189376.12', 'ENSG00000196159.14', 'ENSG00000196196.3', 'ENSG00000196218.14', 'ENSG00000196358.12', 'ENSG00000196411.10', 'ENSG00000196415.10', 'ENSG00000196420.8', 'ENSG00000196453.8', 'ENSG00000196455.8', 'ENSG00000196544.8', 'ENSG00000196611.6', 'ENSG00000196659.10', 'ENSG00000196767.9', 'ENSG00000196776.17', 'ENSG00000196781.16', 'ENSG00000196812.6', 'ENSG00000196850.6', 'ENSG00000196937.11', 'ENSG00000196961.13', 'ENSG00000196976.8', 'ENSG00000197153.5', 'ENSG00000197406.8', 'ENSG00000197409.8', 'ENSG00000197442.11', 'ENSG00000197566.10', 'ENSG00000197646.8', 'ENSG00000197745.3', 'ENSG00000197746.15', 'ENSG00000197785.14', 'ENSG00000197905.10', 'ENSG00000197956.10', 'ENSG00000197992.7', 'ENSG00000198026.8', 'ENSG00000198042.11', 'ENSG00000198060.10', 'ENSG00000198108.4', 'ENSG00000198157.11', 'ENSG00000198162.12', 'ENSG00000198169.9', 'ENSG00000198205.7', 'ENSG00000198355.5', 'ENSG00000198356.12', 'ENSG00000198478.8', 'ENSG00000198523.6', 'ENSG00000198574.6', 'ENSG00000198642.7', 'ENSG00000198648.12', 'ENSG00000198682.13', 'ENSG00000198730.9', 'ENSG00000198739.11', 'ENSG00000198743.7', 'ENSG00000198746.13', 'ENSG00000198752.11', 'ENSG00000198755.11', 'ENSG00000198759.12', 'ENSG00000198797.7', 'ENSG00000198805.13', 'ENSG00000198816.7', 'ENSG00000198818.10', 'ENSG00000198833.7', 'ENSG00000198841.4', 'ENSG00000198846.6', 'ENSG00000198890.9', 'ENSG00000198937.9', 'ENSG00000198952.8', 'ENSG00000198959.12', 'ENSG00000203668.3', 'ENSG00000203730.3', 'ENSG00000203737.5', 'ENSG00000203772.8', 'ENSG00000203877.9', 'ENSG00000203965.13', 'ENSG00000204019.5', 'ENSG00000204052.5', 'ENSG00000204128.6', 'ENSG00000204140.10', 'ENSG00000204227.5', 'ENSG00000204228.4', 'ENSG00000204264.12', 'ENSG00000204304.12', 'ENSG00000204308.8', 'ENSG00000204310.13', 'ENSG00000204315.4', 'ENSG00000204347.4', 'ENSG00000204371.12', 'ENSG00000204388.7', 'ENSG00000204392.11', 'ENSG00000204394.13', 'ENSG00000204396.11', 'ENSG00000204403.11', 'ENSG00000204439.4', 'ENSG00000204469.13', 'ENSG00000204548.4', 'ENSG00000204568.12', 'ENSG00000204569.10', 'ENSG00000204576.12', 'ENSG00000204619.8', 'ENSG00000204634.13', 'ENSG00000204644.10', 'ENSG00000204659.5', 'ENSG00000204687.4', 'ENSG00000204713.11', 'ENSG00000204767.4', 'ENSG00000204851.7', 'ENSG00000204859.13', 'ENSG00000204866.9', 'ENSG00000204882.4', 'ENSG00000204899.6', 'ENSG00000204947.9', 'ENSG00000204950.4', 'ENSG00000205220.12', 'ENSG00000205362.11', 'ENSG00000205693.4', 'ENSG00000205765.10', 'ENSG00000205795.5', 'ENSG00000205808.7', 'ENSG00000205863.11', 'ENSG00000206013.2', 'ENSG00000206177.7', 'ENSG00000206203.5', 'ENSG00000206384.11', 'ENSG00000206559.8', 'ENSG00000212123.4', 'ENSG00000212126.3', 'ENSG00000212128.2', 'ENSG00000212916.6', 'ENSG00000213023.11', 'ENSG00000213281.5', 'ENSG00000213341.11', 'ENSG00000213402.3', 'ENSG00000213578.6', 'ENSG00000213588.6', 'ENSG00000213654.10', 'ENSG00000213714.1', 'ENSG00000213780.11', 'ENSG00000213859.8', 'ENSG00000213886.4', 'ENSG00000213931.7', 'ENSG00000213937.4', 'ENSG00000213996.13', 'ENSG00000214226.9', 'ENSG00000214357.9', 'ENSG00000214376.6', 'ENSG00000214517.10', 'ENSG00000215218.4', 'ENSG00000215695.2', 'ENSG00000219435.6', 'ENSG00000221821.4', 'ENSG00000223658.8', 'ENSG00000224051.7', 'ENSG00000224440.2', 'ENSG00000224470.9', 'ENSG00000224940.10', 'ENSG00000225110.3', 'ENSG00000225614.4', 'ENSG00000226979.9', 'ENSG00000228278.5', 'ENSG00000228594.4', 'ENSG00000230797.3', 'ENSG00000231389.8', 'ENSG00000231887.9', 'ENSG00000232112.3', 'ENSG00000232629.9', 'ENSG00000232810.5', 'ENSG00000232838.4', 'ENSG00000233927.5', 'ENSG00000234776.5', 'ENSG00000235863.4', 'ENSG00000236334.3', 'ENSG00000239704.12', 'ENSG00000240445.6', 'ENSG00000240747.9', 'ENSG00000240972.2', 'ENSG00000241119.2', 'ENSG00000241224.8', 'ENSG00000241360.2', 'ENSG00000241563.4', 'ENSG00000242173.10', 'ENSG00000242252.2', 'ENSG00000242574.9', 'ENSG00000242616.4', 'ENSG00000242732.6', 'ENSG00000243056.2', 'ENSG00000243207.6', 'ENSG00000243543.10', 'ENSG00000243660.12', 'ENSG00000243709.1', 'ENSG00000243725.7', 'ENSG00000243749.2', 'ENSG00000244617.3', 'ENSG00000247626.5', 'ENSG00000249751.4', 'ENSG00000250423.3', 'ENSG00000250565.7', 'ENSG00000253159.3', 'ENSG00000253251.3', 'ENSG00000254585.5', 'ENSG00000254598.3', 'ENSG00000254772.10', 'ENSG00000254858.10', 'ENSG00000254999.4', 'ENSG00000255150.2', 'ENSG00000255152.8', 'ENSG00000255423.1', 'ENSG00000255690.3', 'ENSG00000256235.3', 'ENSG00000256525.8', 'ENSG00000256762.1', 'ENSG00000256812.2', 'ENSG00000257365.8', 'ENSG00000258484.4', 'ENSG00000258588.3', 'ENSG00000260314.3', 'ENSG00000261115.7', 'ENSG00000261796.1', 'ENSG00000262406.3', 'ENSG00000262655.4', 'ENSG00000262814.8', 'ENSG00000263715.7', 'ENSG00000265354.4', 'ENSG00000269058.6', 'ENSG00000269113.4', 'ENSG00000269891.2', 'ENSG00000269955.2', 'ENSG00000270885.2', 'ENSG00000271079.1', 'ENSG00000271303.2', 'ENSG00000271824.2', 'ENSG00000273802.3', 'ENSG00000273983.2', 'ENSG00000274183.2', 'ENSG00000274618.2', 'ENSG00000274810.4', 'ENSG00000275126.2', 'ENSG00000275395.7', 'ENSG00000275688.4', 'ENSG00000275713.3', 'ENSG00000275714.2', 'ENSG00000276293.5', 'ENSG00000276410.4', 'ENSG00000276966.3', 'ENSG00000277075.3', 'ENSG00000277150.2', 'ENSG00000277157.2', 'ENSG00000277586.4', 'ENSG00000278463.2', 'ENSG00000278705.3', 'ENSG00000283239.1', 'ENSG00000283268.2', 'ENSG00000283329.2', 'ENSG00000283706.2', 'ENSG00000283755.2', 'ENSG00000283980.1', 'ENSG00000284638.2', 'ENSG00000284791.2', 'ENSG00000286522.2', 'ENSG00000287363.4', 'ENSG00000288920.1', 'ENSG00000291309.1']. Select the correct one and provide it as `field='XXX'` to the dataset loading method. 
Traceback:    Traceback (most recent call last):
                File "/src/services/worker/src/worker/job_runners/split/first_rows.py", line 241, in compute_first_rows_from_streaming_response
                  iterable_dataset = iterable_dataset._resolve_features()
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/iterable_dataset.py", line 2216, in _resolve_features
                  features = _infer_features_from_batch(self.with_format(None)._head())
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/iterable_dataset.py", line 1239, in _head
                  return _examples_to_batch(list(self.take(n)))
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/iterable_dataset.py", line 1389, in __iter__
                  for key, example in ex_iterable:
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/iterable_dataset.py", line 1044, in __iter__
                  yield from islice(self.ex_iterable, self.n)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/iterable_dataset.py", line 282, in __iter__
                  for key, pa_table in self.generate_tables_fn(**self.kwargs):
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/packaged_modules/json/json.py", line 170, in _generate_tables
                  raise ValueError(
              ValueError: Not able to read records in the JSON file at hf://datasets/rouskinlab/human_mRNA@d2fcead39c6d53121c78341525c122fa9e2d90d0/data.json. You should probably indicate the field of the JSON file containing your records. This JSON file contain the following fields: ['ENSG00000004399.13', 'ENSG00000004799.8', 'ENSG00000005001.10', 'ENSG00000005020.13', 'ENSG00000005022.6', 'ENSG00000005073.6', 'ENSG00000005243.10', 'ENSG00000005812.11', 'ENSG00000006118.15', 'ENSG00000007520.4', 'ENSG00000008018.9', 'ENSG00000008056.14', 'ENSG00000008196.13', 'ENSG00000008438.5', 'ENSG00000009694.14', 'ENSG00000010319.7', 'ENSG00000011260.14', 'ENSG00000011426.11', 'ENSG00000011590.14', 'ENSG00000011677.13', 'ENSG00000013392.8', 'ENSG00000014123.10', 'ENSG00000014164.7', 'ENSG00000015676.18', 'ENSG00000016490.16', 'ENSG00000019549.13', 'ENSG00000019995.6', 'ENSG00000020633.19', 'ENSG00000024862.18', 'ENSG00000025772.8', 'ENSG00000026025.16', 'ENSG00000034693.15', 'ENSG00000049860.14', 'ENSG00000052723.12', 'ENSG00000057468.7', 'ENSG00000059378.13', 'ENSG00000060491.17', 'ENSG00000060762.19', 'ENSG00000062650.20', 'ENSG00000065613.15', 'ENSG00000066735.16', 'ENSG00000066777.9', 'ENSG00000067704.10', 'ENSG00000068394.11', 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Select the correct one and provide it as `field='XXX'` to the dataset loading method.
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Data types

sequence: 1456 datapoints
structure: 1456 datapoints
dms: 1456 datapoints
Conversion report

Over a total of 1503 datapoints, there are:
OUTPUT

ALL: 1456 valid datapoints
INCLUDED: 0 duplicate sequences with different structure / dms / shape
MODIFIED

0 multiple sequences with the same reference (renamed reference)
FILTERED OUT

0 invalid datapoints (ex: sequence with non-regular characters)
0 datapoints with bad structures
0 duplicate sequences with the same structure / dms / shape
47 datapoints removed because of low AUROC (<0.8)
Downloads last month: 0
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