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***Run inference like this:*** nnUNetv2_predict -d Dataset001_Prostate158 -i INPUT_FOLDER -o OUTPUT_FOLDER -f 0 -tr nnUNetTrainer_20epochs -c 3d_fullres -p nnUNetPlans ***Once inference is completed, run postprocessing like this:*** nnUNetv2_apply_postprocessing -i OUTPUT_FOLDER -o OUTPUT_FOLDER_PP -pp_pkl_file nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/postprocessing.pkl -np 8 -plans_json nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/plans.json |