osbm commited on
Commit
a987572
1 Parent(s): 80adb65

Upload folder using huggingface_hub

Browse files
This view is limited to 50 files because it contains too many changes.   See raw diff
Files changed (50) hide show
  1. nnUNet_results/Dataset001_Prostate158/inference_information.json +30 -0
  2. nnUNet_results/Dataset001_Prostate158/inference_instructions.txt +7 -0
  3. nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/PROSTATE_104.nii.gz +3 -0
  4. nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/PROSTATE_116.nii.gz +3 -0
  5. nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/PROSTATE_117.nii.gz +3 -0
  6. nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/PROSTATE_119.nii.gz +3 -0
  7. nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/PROSTATE_124.nii.gz +3 -0
  8. nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/PROSTATE_128.nii.gz +3 -0
  9. nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/PROSTATE_133.nii.gz +3 -0
  10. nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/PROSTATE_142.nii.gz +3 -0
  11. nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/PROSTATE_145.nii.gz +3 -0
  12. nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/PROSTATE_148.nii.gz +3 -0
  13. nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/PROSTATE_154.nii.gz +3 -0
  14. nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/PROSTATE_21.nii.gz +3 -0
  15. nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/PROSTATE_28.nii.gz +3 -0
  16. nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/PROSTATE_31.nii.gz +3 -0
  17. nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/PROSTATE_39.nii.gz +3 -0
  18. nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/PROSTATE_45.nii.gz +3 -0
  19. nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/PROSTATE_46.nii.gz +3 -0
  20. nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/PROSTATE_49.nii.gz +3 -0
  21. nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/PROSTATE_50.nii.gz +3 -0
  22. nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/PROSTATE_55.nii.gz +3 -0
  23. nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/PROSTATE_60.nii.gz +3 -0
  24. nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/PROSTATE_63.nii.gz +3 -0
  25. nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/PROSTATE_69.nii.gz +3 -0
  26. nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/PROSTATE_70.nii.gz +3 -0
  27. nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/PROSTATE_72.nii.gz +3 -0
  28. nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/PROSTATE_81.nii.gz +3 -0
  29. nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/PROSTATE_91.nii.gz +3 -0
  30. nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/PROSTATE_97.nii.gz +3 -0
  31. nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/dataset.json +15 -0
  32. nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/plans.json +316 -0
  33. nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/postprocessed/PROSTATE_104.nii.gz +3 -0
  34. nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/postprocessed/PROSTATE_116.nii.gz +3 -0
  35. nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/postprocessed/PROSTATE_117.nii.gz +3 -0
  36. nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/postprocessed/PROSTATE_119.nii.gz +3 -0
  37. nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/postprocessed/PROSTATE_124.nii.gz +3 -0
  38. nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/postprocessed/PROSTATE_128.nii.gz +3 -0
  39. nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/postprocessed/PROSTATE_133.nii.gz +3 -0
  40. nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/postprocessed/PROSTATE_142.nii.gz +3 -0
  41. nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/postprocessed/PROSTATE_145.nii.gz +3 -0
  42. nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/postprocessed/PROSTATE_148.nii.gz +3 -0
  43. nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/postprocessed/PROSTATE_154.nii.gz +3 -0
  44. nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/postprocessed/PROSTATE_21.nii.gz +3 -0
  45. nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/postprocessed/PROSTATE_28.nii.gz +3 -0
  46. nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/postprocessed/PROSTATE_31.nii.gz +3 -0
  47. nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/postprocessed/PROSTATE_39.nii.gz +3 -0
  48. nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/postprocessed/PROSTATE_45.nii.gz +3 -0
  49. nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/postprocessed/PROSTATE_46.nii.gz +3 -0
  50. nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/postprocessed/PROSTATE_49.nii.gz +3 -0
nnUNet_results/Dataset001_Prostate158/inference_information.json ADDED
@@ -0,0 +1,30 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "all_results": {
3
+ "nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres": 0.7910807565880633
4
+ },
5
+ "best_model_or_ensemble": {
6
+ "postprocessing_file": "nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/postprocessing.pkl",
7
+ "result_on_crossval_post_pp": 0.7910858878327467,
8
+ "result_on_crossval_pre_pp": 0.7910807565880633,
9
+ "selected_model_or_models": [
10
+ {
11
+ "configuration": "3d_fullres",
12
+ "plans_identifier": "nnUNetPlans",
13
+ "trainer": "nnUNetTrainer_20epochs"
14
+ }
15
+ ],
16
+ "some_plans_file": "nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/plans.json"
17
+ },
18
+ "considered_models": [
19
+ {
20
+ "configuration": "3d_fullres",
21
+ "plans": "nnUNetPlans",
22
+ "trainer": "nnUNetTrainer_20epochs"
23
+ }
24
+ ],
25
+ "dataset_name_or_id": "Dataset001_Prostate158",
26
+ "ensembling_allowed": false,
27
+ "folds": [
28
+ 0
29
+ ]
30
+ }
nnUNet_results/Dataset001_Prostate158/inference_instructions.txt ADDED
@@ -0,0 +1,7 @@
 
 
 
 
 
 
 
 
1
+ ***Run inference like this:***
2
+
3
+ nnUNetv2_predict -d Dataset001_Prostate158 -i INPUT_FOLDER -o OUTPUT_FOLDER -f 0 -tr nnUNetTrainer_20epochs -c 3d_fullres -p nnUNetPlans
4
+
5
+ ***Once inference is completed, run postprocessing like this:***
6
+
7
+ nnUNetv2_apply_postprocessing -i OUTPUT_FOLDER -o OUTPUT_FOLDER_PP -pp_pkl_file nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/postprocessing.pkl -np 8 -plans_json nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/plans.json
nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/PROSTATE_104.nii.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:556808b9e2ae2196b62cbbe8e8596cec16b1d82b5aede19b69dd810d92149f73
3
+ size 7172
nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/PROSTATE_116.nii.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:a7c0af67d1467d53407602575d26d8445ca6d3474cc3b8205e29c62e224fc59a
3
+ size 7799
nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/PROSTATE_117.nii.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:cb0317af3d11451195aafa83c20e7d10fcc6652326b547f34ed1acfde8d58a49
3
+ size 6117
nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/PROSTATE_119.nii.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:e74e632f982c0afeeb366910c2e808eb55db531807c2603f3a534af0102b4bba
3
+ size 8147
nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/PROSTATE_124.nii.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:afa2b364efa1243ce0afcf08fbcd11f8f7f8e1168fdd644382b063e16f8b5ab8
3
+ size 11921
nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/PROSTATE_128.nii.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:1777190c1bd5e2d5c5b08e1b3059832976e0b956e90fa2b89e91f7ffc187d140
3
+ size 5185
nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/PROSTATE_133.nii.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:fd9d542a662b928fa640fa7f60b6b9a0f4e65f7352652b73845a31cfa5df1a6b
3
+ size 7875
nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/PROSTATE_142.nii.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:cac307d8c7ed5eec012935a8f9c6c7a7e2488f6cb74593df42ef00fa49cc5a0c
3
+ size 10740
nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/PROSTATE_145.nii.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:8151ad674082d0e98060b454fd417b6cbc3ce8c102484749ec2f868d4b877119
3
+ size 9315
nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/PROSTATE_148.nii.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:f193de720d3b8f0b34892f30f6f759e59e7fa84becfa84d753e9a6160f67ed55
3
+ size 7091
nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/PROSTATE_154.nii.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:dac2b47299f7e0dd3ff99d81e975fef7630ac21f6af64d9fcd9a1d70547e1492
3
+ size 7305
nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/PROSTATE_21.nii.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:5e211a473177ed851c3cef0bf557304bf4ab4368fde1189a8118a17137e90e82
3
+ size 8135
nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/PROSTATE_28.nii.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:107fed8dad9693829b74e7bd5b6d08ad84733a874807d260d3961bc40b89409a
3
+ size 5249
nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/PROSTATE_31.nii.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:4ef0c2a419b044191ef330721ac2b21d630135cbb673747e2ae990cdea8fabad
3
+ size 7843
nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/PROSTATE_39.nii.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:29da27c2148525e18c1db6cefb11ee6c8130f7f1f9a77b14da756ae8e322a951
3
+ size 5969
nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/PROSTATE_45.nii.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:46cb1acd5ae4e127a08a3e0193ffb571f2276504d27e9eba8a678c759944706a
3
+ size 4847
nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/PROSTATE_46.nii.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:17975497f615d54f4e9c2dc84f568616fc9d5fec3a2bbc9b7cb739413df46bc5
3
+ size 6165
nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/PROSTATE_49.nii.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:7ce35ba2868595d72068810269f4cfe4ed6b275a7765a1293e0800c27657e1c3
3
+ size 12232
nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/PROSTATE_50.nii.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:4433a806b77b0f002134217e8ce9274d0f11b398c442c1ae96e3dde780ef8a69
3
+ size 9270
nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/PROSTATE_55.nii.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:14f8c00638985052fe2a87e8362a5d5d621a73a2e990d1bc2262cdcbaa58b52e
3
+ size 16423
nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/PROSTATE_60.nii.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:e757cb48f457912830a915bc5dd7ffe23f45dff1aee99a609e6e2779d40a9565
3
+ size 14433
nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/PROSTATE_63.nii.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:25f004b7002f2a2abf7e20e3f1c375139689823fe548c72f268d390ecda863f9
3
+ size 5834
nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/PROSTATE_69.nii.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:8e1304fe1b37551ffc243ffc63a61a5e8fe07ac3fcee5ef38f963ccfce8f072f
3
+ size 5290
nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/PROSTATE_70.nii.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:81ffe4910fdd0692bb7925e3b11ebf384100065600910af1dc1ba7882d0d17a6
3
+ size 7975
nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/PROSTATE_72.nii.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:4387d033d059c406d9c2d93a8c28c649b2229d70998196c30dbdb20c533bbe89
3
+ size 11533
nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/PROSTATE_81.nii.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:9d25a8fda52672468f80145a754117a2802b0f4adbb09b2531b5be750eb61068
3
+ size 8258
nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/PROSTATE_91.nii.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:1c0d03f3da8292ef3f26b1807b012921c212ccdebbdea7f78d5b8f31b656c3b7
3
+ size 9332
nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/PROSTATE_97.nii.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:b33c1fc4d1aa275d514c27edee3ae962d79bb7d369e87fc82f37ef5e31fe7384
3
+ size 7115
nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/dataset.json ADDED
@@ -0,0 +1,15 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "name": "Prostate158",
3
+ "description": "Prostate cancer segmentation dataset",
4
+ "channel_names": {
5
+ "0": "T2"
6
+ },
7
+ "labels": {
8
+ "background": 0,
9
+ "prostate_inner": 1,
10
+ "prostate_outer": 2
11
+ },
12
+ "numTraining": 139,
13
+ "numTest": 19,
14
+ "file_ending": ".nii.gz"
15
+ }
nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/plans.json ADDED
@@ -0,0 +1,316 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "dataset_name": "Dataset001_Prostate158",
3
+ "plans_name": "nnUNetPlans",
4
+ "original_median_spacing_after_transp": [
5
+ 3.0,
6
+ 0.4017857015132904,
7
+ 0.4017857015132904
8
+ ],
9
+ "original_median_shape_after_transp": [
10
+ 25,
11
+ 270,
12
+ 270
13
+ ],
14
+ "image_reader_writer": "SimpleITKIO",
15
+ "transpose_forward": [
16
+ 0,
17
+ 1,
18
+ 2
19
+ ],
20
+ "transpose_backward": [
21
+ 0,
22
+ 1,
23
+ 2
24
+ ],
25
+ "configurations": {
26
+ "2d": {
27
+ "data_identifier": "nnUNetPlans_2d",
28
+ "preprocessor_name": "DefaultPreprocessor",
29
+ "batch_size": 32,
30
+ "patch_size": [
31
+ 320,
32
+ 320
33
+ ],
34
+ "median_image_size_in_voxels": [
35
+ 270.0,
36
+ 270.0
37
+ ],
38
+ "spacing": [
39
+ 0.4017857015132904,
40
+ 0.4017857015132904
41
+ ],
42
+ "normalization_schemes": [
43
+ "ZScoreNormalization"
44
+ ],
45
+ "use_mask_for_norm": [
46
+ false
47
+ ],
48
+ "UNet_class_name": "PlainConvUNet",
49
+ "UNet_base_num_features": 32,
50
+ "n_conv_per_stage_encoder": [
51
+ 2,
52
+ 2,
53
+ 2,
54
+ 2,
55
+ 2,
56
+ 2,
57
+ 2
58
+ ],
59
+ "n_conv_per_stage_decoder": [
60
+ 2,
61
+ 2,
62
+ 2,
63
+ 2,
64
+ 2,
65
+ 2
66
+ ],
67
+ "num_pool_per_axis": [
68
+ 6,
69
+ 6
70
+ ],
71
+ "pool_op_kernel_sizes": [
72
+ [
73
+ 1,
74
+ 1
75
+ ],
76
+ [
77
+ 2,
78
+ 2
79
+ ],
80
+ [
81
+ 2,
82
+ 2
83
+ ],
84
+ [
85
+ 2,
86
+ 2
87
+ ],
88
+ [
89
+ 2,
90
+ 2
91
+ ],
92
+ [
93
+ 2,
94
+ 2
95
+ ],
96
+ [
97
+ 2,
98
+ 2
99
+ ]
100
+ ],
101
+ "conv_kernel_sizes": [
102
+ [
103
+ 3,
104
+ 3
105
+ ],
106
+ [
107
+ 3,
108
+ 3
109
+ ],
110
+ [
111
+ 3,
112
+ 3
113
+ ],
114
+ [
115
+ 3,
116
+ 3
117
+ ],
118
+ [
119
+ 3,
120
+ 3
121
+ ],
122
+ [
123
+ 3,
124
+ 3
125
+ ],
126
+ [
127
+ 3,
128
+ 3
129
+ ]
130
+ ],
131
+ "unet_max_num_features": 512,
132
+ "resampling_fn_data": "resample_data_or_seg_to_shape",
133
+ "resampling_fn_seg": "resample_data_or_seg_to_shape",
134
+ "resampling_fn_data_kwargs": {
135
+ "is_seg": false,
136
+ "order": 3,
137
+ "order_z": 0,
138
+ "force_separate_z": null
139
+ },
140
+ "resampling_fn_seg_kwargs": {
141
+ "is_seg": true,
142
+ "order": 1,
143
+ "order_z": 0,
144
+ "force_separate_z": null
145
+ },
146
+ "resampling_fn_probabilities": "resample_data_or_seg_to_shape",
147
+ "resampling_fn_probabilities_kwargs": {
148
+ "is_seg": false,
149
+ "order": 1,
150
+ "order_z": 0,
151
+ "force_separate_z": null
152
+ },
153
+ "batch_dice": true
154
+ },
155
+ "3d_fullres": {
156
+ "data_identifier": "nnUNetPlans_3d_fullres",
157
+ "preprocessor_name": "DefaultPreprocessor",
158
+ "batch_size": 2,
159
+ "patch_size": [
160
+ 28,
161
+ 256,
162
+ 256
163
+ ],
164
+ "median_image_size_in_voxels": [
165
+ 25.0,
166
+ 270.0,
167
+ 270.0
168
+ ],
169
+ "spacing": [
170
+ 2.999998998641968,
171
+ 0.4017857015132904,
172
+ 0.4017857015132904
173
+ ],
174
+ "normalization_schemes": [
175
+ "ZScoreNormalization"
176
+ ],
177
+ "use_mask_for_norm": [
178
+ false
179
+ ],
180
+ "UNet_class_name": "PlainConvUNet",
181
+ "UNet_base_num_features": 32,
182
+ "n_conv_per_stage_encoder": [
183
+ 2,
184
+ 2,
185
+ 2,
186
+ 2,
187
+ 2,
188
+ 2,
189
+ 2
190
+ ],
191
+ "n_conv_per_stage_decoder": [
192
+ 2,
193
+ 2,
194
+ 2,
195
+ 2,
196
+ 2,
197
+ 2
198
+ ],
199
+ "num_pool_per_axis": [
200
+ 2,
201
+ 6,
202
+ 6
203
+ ],
204
+ "pool_op_kernel_sizes": [
205
+ [
206
+ 1,
207
+ 1,
208
+ 1
209
+ ],
210
+ [
211
+ 1,
212
+ 2,
213
+ 2
214
+ ],
215
+ [
216
+ 1,
217
+ 2,
218
+ 2
219
+ ],
220
+ [
221
+ 2,
222
+ 2,
223
+ 2
224
+ ],
225
+ [
226
+ 2,
227
+ 2,
228
+ 2
229
+ ],
230
+ [
231
+ 1,
232
+ 2,
233
+ 2
234
+ ],
235
+ [
236
+ 1,
237
+ 2,
238
+ 2
239
+ ]
240
+ ],
241
+ "conv_kernel_sizes": [
242
+ [
243
+ 1,
244
+ 3,
245
+ 3
246
+ ],
247
+ [
248
+ 1,
249
+ 3,
250
+ 3
251
+ ],
252
+ [
253
+ 3,
254
+ 3,
255
+ 3
256
+ ],
257
+ [
258
+ 3,
259
+ 3,
260
+ 3
261
+ ],
262
+ [
263
+ 3,
264
+ 3,
265
+ 3
266
+ ],
267
+ [
268
+ 3,
269
+ 3,
270
+ 3
271
+ ],
272
+ [
273
+ 3,
274
+ 3,
275
+ 3
276
+ ]
277
+ ],
278
+ "unet_max_num_features": 320,
279
+ "resampling_fn_data": "resample_data_or_seg_to_shape",
280
+ "resampling_fn_seg": "resample_data_or_seg_to_shape",
281
+ "resampling_fn_data_kwargs": {
282
+ "is_seg": false,
283
+ "order": 3,
284
+ "order_z": 0,
285
+ "force_separate_z": null
286
+ },
287
+ "resampling_fn_seg_kwargs": {
288
+ "is_seg": true,
289
+ "order": 1,
290
+ "order_z": 0,
291
+ "force_separate_z": null
292
+ },
293
+ "resampling_fn_probabilities": "resample_data_or_seg_to_shape",
294
+ "resampling_fn_probabilities_kwargs": {
295
+ "is_seg": false,
296
+ "order": 1,
297
+ "order_z": 0,
298
+ "force_separate_z": null
299
+ },
300
+ "batch_dice": false
301
+ }
302
+ },
303
+ "experiment_planner_used": "ExperimentPlanner",
304
+ "label_manager": "LabelManager",
305
+ "foreground_intensity_properties_per_channel": {
306
+ "0": {
307
+ "max": 1694.0,
308
+ "mean": 267.5592956542969,
309
+ "median": 242.0,
310
+ "min": 0.0,
311
+ "percentile_00_5": 37.0,
312
+ "percentile_99_5": 768.0,
313
+ "std": 136.02105712890625
314
+ }
315
+ }
316
+ }
nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/postprocessed/PROSTATE_104.nii.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:556808b9e2ae2196b62cbbe8e8596cec16b1d82b5aede19b69dd810d92149f73
3
+ size 7172
nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/postprocessed/PROSTATE_116.nii.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:a7c0af67d1467d53407602575d26d8445ca6d3474cc3b8205e29c62e224fc59a
3
+ size 7799
nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/postprocessed/PROSTATE_117.nii.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:e27422c4deeff1c9518c65032507e62bd88d73798296c81c528d3dc2f92918b6
3
+ size 6117
nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/postprocessed/PROSTATE_119.nii.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:e74e632f982c0afeeb366910c2e808eb55db531807c2603f3a534af0102b4bba
3
+ size 8147
nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/postprocessed/PROSTATE_124.nii.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:e068f7950d2c3f4c5c50ff8d1267134c060373e76b6d6f1c6007385ed1143ddb
3
+ size 11920
nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/postprocessed/PROSTATE_128.nii.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:1777190c1bd5e2d5c5b08e1b3059832976e0b956e90fa2b89e91f7ffc187d140
3
+ size 5185
nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/postprocessed/PROSTATE_133.nii.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:fd9d542a662b928fa640fa7f60b6b9a0f4e65f7352652b73845a31cfa5df1a6b
3
+ size 7875
nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/postprocessed/PROSTATE_142.nii.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:cac307d8c7ed5eec012935a8f9c6c7a7e2488f6cb74593df42ef00fa49cc5a0c
3
+ size 10740
nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/postprocessed/PROSTATE_145.nii.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:8151ad674082d0e98060b454fd417b6cbc3ce8c102484749ec2f868d4b877119
3
+ size 9315
nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/postprocessed/PROSTATE_148.nii.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:f193de720d3b8f0b34892f30f6f759e59e7fa84becfa84d753e9a6160f67ed55
3
+ size 7091
nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/postprocessed/PROSTATE_154.nii.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:dac2b47299f7e0dd3ff99d81e975fef7630ac21f6af64d9fcd9a1d70547e1492
3
+ size 7305
nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/postprocessed/PROSTATE_21.nii.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:5e211a473177ed851c3cef0bf557304bf4ab4368fde1189a8118a17137e90e82
3
+ size 8135
nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/postprocessed/PROSTATE_28.nii.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:107fed8dad9693829b74e7bd5b6d08ad84733a874807d260d3961bc40b89409a
3
+ size 5249
nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/postprocessed/PROSTATE_31.nii.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:6c7f1dee593b6c8cd52154719251ede84776673a8f7af4740d160edf603848e7
3
+ size 7844
nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/postprocessed/PROSTATE_39.nii.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:29da27c2148525e18c1db6cefb11ee6c8130f7f1f9a77b14da756ae8e322a951
3
+ size 5969
nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/postprocessed/PROSTATE_45.nii.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:bd192b903a1be4d4b59b8e331f75a76f75351a99664c2faa263cb8eb53973f8e
3
+ size 4848
nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/postprocessed/PROSTATE_46.nii.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:17975497f615d54f4e9c2dc84f568616fc9d5fec3a2bbc9b7cb739413df46bc5
3
+ size 6165
nnUNet_results/Dataset001_Prostate158/nnUNetTrainer_20epochs__nnUNetPlans__3d_fullres/crossval_results_folds_0/postprocessed/PROSTATE_49.nii.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:7ce35ba2868595d72068810269f4cfe4ed6b275a7765a1293e0800c27657e1c3
3
+ size 12232