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39963a291aca2c3259969dbe09709e75ba6a3fae | KSayrs/randomized-dequeus-and-queues | src/Deque.java | [
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if(item == null){ throw new NullPointerException("Cannot add a null item."); }
if(itemCount == 0){ // resetting nodes back to one
pointHead = new Node(item);
pointTail = pointHead;
} else {
Node oldHead = pointHead; //old data
pointHead = new Node(item); // replacing the head pointer
pointHead.next = oldHead; // old value is the next one in the line
oldHead.prev = pointHead;
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itemCount++; // adding an item =]
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39963a291aca2c3259969dbe09709e75ba6a3fae | KSayrs/randomized-dequeus-and-queues | src/Deque.java | [
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if(isEmpty()){ // resetting nodes back to one
pointTail = new Node(item);
pointHead = pointTail;
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pointTail = new Node(item);
oldTail.next = pointTail;
pointTail.prev = oldTail;
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itemCount++;
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39963a291aca2c3259969dbe09709e75ba6a3fae | KSayrs/randomized-dequeus-and-queues | src/Deque.java | [
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if(isEmpty()){ throw new NoSuchElementException("Cannot remove an item from an empty deque."); }
Item item = pointHead.item; // old
if(itemCount == 1){ // reset when empties
pointTail = null;
pointHead = null;
} else {
pointHead = pointHead.next; // moving the node dowwwwn
pointHead.prev = null; // nothing before, now
}
itemCount--; // removing an item =[
return item; // return the removed item
} | /** remove and return the item from the front of the deque. Throws an error if called when the deque is empty. */ | remove and return the item from the front of the deque. Throws an error if called when the deque is empty. | [
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39963a291aca2c3259969dbe09709e75ba6a3fae | KSayrs/randomized-dequeus-and-queues | src/Deque.java | [
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Item item = pointTail.item; // old
if(itemCount == 1){
pointTail = null;
pointHead = null;
} else {
pointTail = pointTail.prev; // moving the node uuuuup
pointTail.next = null; // nothing after, now
}
itemCount--;
return item; // return the removed item
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1045e5176088a42222dc33070d290ef8a3f1b79b | KSayrs/randomized-dequeus-and-queues | src/RandomizedQueue.java | [
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if (item == null){ throw new NullPointerException("Cannot add a null item"); }
// fill the nulls
if(itemCount < array.length) {
for(int i=0;i<array.length;i++) {
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break;
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}
}
// resize when too big
if(itemCount == array.length){
resize(2*itemCount);
array[itemCount] = item;
}
itemCount++; // Item added!!
} | /** Add the item to the queue. Null items cannot be added. */ | Add the item to the queue. Null items cannot be added. | [
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1045e5176088a42222dc33070d290ef8a3f1b79b | KSayrs/randomized-dequeus-and-queues | src/RandomizedQueue.java | [
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if(itemCount == 0){ throw new NoSuchElementException("Queue is empty"); }
int rand = StdRandom.uniform(itemCount);
while(array[rand] == null){ // if it's a null value (only happens after dequeing)
rand = StdRandom.uniform(array.length); // pick another one
}
Item item = array[rand]; // get the item
array[rand] = null; // D E S T R O Y
itemCount--; // decrement the item count
return item; // return the item
} | /** Remove and return a random item. This will throw an error if called when the queue is empty. */ | Remove and return a random item. This will throw an error if called when the queue is empty. | [
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int rand = StdRandom.uniform(itemCount);
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1045e5176088a42222dc33070d290ef8a3f1b79b | KSayrs/randomized-dequeus-and-queues | src/RandomizedQueue.java | [
"MIT"
] | Java | sample | Item | public Item sample(){
if(itemCount == 0){
throw new NoSuchElementException("Queue is empty");
}
int rand = StdRandom.uniform(array.length);
while(array[rand] == null){ // if it's a null value
rand = StdRandom.uniform(array.length); // pick another one
}
return array[rand];
} | /** return a random item (but do not remove it).
* This will throw an error if called when the queue is empty.
* */ | return a random item (but do not remove it).
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if(itemCount == 0){
throw new NoSuchElementException("Queue is empty");
}
int rand = StdRandom.uniform(array.length);
while(array[rand] == null){
rand = StdRandom.uniform(array.length);
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1045e5176088a42222dc33070d290ef8a3f1b79b | KSayrs/randomized-dequeus-and-queues | src/RandomizedQueue.java | [
"MIT"
] | Java | reset | null | private void reset(){
int j=0;
for(int i=0; i<array.length; i++){
if(j == itemCount) {return;}
if(array[i]!=null){
temp[j] = array[i];
j++;
}
}
} | // not strictly necessary to have a separate method here, but hey it helped in the process | not strictly necessary to have a separate method here, but hey it helped in the process | [
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int j=0;
for(int i=0; i<array.length; i++){
if(j == itemCount) {return;}
if(array[i]!=null){
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476d964e4b060a8357c7d748f3b70c6617835eb1 | iedadata/geomapapp | haxby/db/mgg/MGGData.java | [
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] | Java | drawCurrentPoint | null | protected void drawCurrentPoint() {
if( map==null || currentPoint==null || !map.isVisible() ) return;
synchronized (map.getTreeLock() ) {
Graphics2D g = map.getGraphics2D();
Graphics2D g2 = map.getGraphics2D();
float zoom = (float)map.getZoom();
g.setStroke( new BasicStroke( 5f/ zoom ) );
Rectangle2D rect = map.getClipRect2D();
double wrap = map.getWrap();
if( wrap>0. ) while( currentPoint.x-wrap > rect.getX() ) currentPoint.x-=wrap;
double size = 10./map.getZoom();
Arc2D.Double arc = new Arc2D.Double( 0., currentPoint.y,
size/6, size/6, 0., 360., Arc2D.CHORD);
Arc2D.Double arc2 = new Arc2D.Double( 0., currentPoint.y-.5*size,
size, size, 0., 360., Arc2D.CHORD);
if( wrap>0. ) {
while( currentPoint.x < rect.getX()+rect.getWidth() ) {
g.setColor(Color.red);
g.setStroke( new BasicStroke( 5f/ zoom ) );
g.draw(currentSeg);
g.setColor(Color.white);
g.setStroke( new BasicStroke( 2.f/ zoom ) );
arc.x = currentPoint.x;
g.draw(arc);
arc2.x = currentPoint.x-.5*size;
g2.setXORMode( Color.white );
g2.setStroke( new BasicStroke( 4f/ zoom ) );
g2.draw(arc2);
currentPoint.x += wrap;
}
} else {
g.setColor(Color.red);
g.setStroke( new BasicStroke( 5f/ zoom ) );
g.draw(currentSeg);
g.setColor(Color.white);
g.setStroke( new BasicStroke( 2.f/ zoom ) );
arc.x = currentPoint.x;
g.draw(arc);
arc2.x = currentPoint.x-.5*size;
g2.setXORMode( Color.white );
g2.setStroke( new BasicStroke( 4f/ zoom ) );
g2.draw(arc2);
}
}
} | // you are looking at; circle is now thicker | you are looking at; circle is now thicker | [
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if( map==null || currentPoint==null || !map.isVisible() ) return;
synchronized (map.getTreeLock() ) {
Graphics2D g = map.getGraphics2D();
Graphics2D g2 = map.getGraphics2D();
float zoom = (float)map.getZoom();
g.setStroke( new BasicStroke( 5f/ zoom ) );
Rectangle2D rect = map.getClipRect2D();
double wrap = map.getWrap();
if( wrap>0. ) while( currentPoint.x-wrap > rect.getX() ) currentPoint.x-=wrap;
double size = 10./map.getZoom();
Arc2D.Double arc = new Arc2D.Double( 0., currentPoint.y,
size/6, size/6, 0., 360., Arc2D.CHORD);
Arc2D.Double arc2 = new Arc2D.Double( 0., currentPoint.y-.5*size,
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if( wrap>0. ) {
while( currentPoint.x < rect.getX()+rect.getWidth() ) {
g.setColor(Color.red);
g.setStroke( new BasicStroke( 5f/ zoom ) );
g.draw(currentSeg);
g.setColor(Color.white);
g.setStroke( new BasicStroke( 2.f/ zoom ) );
arc.x = currentPoint.x;
g.draw(arc);
arc2.x = currentPoint.x-.5*size;
g2.setXORMode( Color.white );
g2.setStroke( new BasicStroke( 4f/ zoom ) );
g2.draw(arc2);
currentPoint.x += wrap;
}
} else {
g.setColor(Color.red);
g.setStroke( new BasicStroke( 5f/ zoom ) );
g.draw(currentSeg);
g.setColor(Color.white);
g.setStroke( new BasicStroke( 2.f/ zoom ) );
arc.x = currentPoint.x;
g.draw(arc);
arc2.x = currentPoint.x-.5*size;
g2.setXORMode( Color.white );
g2.setStroke( new BasicStroke( 4f/ zoom ) );
g2.draw(arc2);
}
}
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double x = p.getX();
double y = p.getY();
//get the displayed area
Rectangle2D rect = map.getClipRect2D();
float yMin = (float)rect.getY();
float yMax = (float)(rect.getY() + rect.getHeight());
float xMin = (float)rect.getX();
float xMax = (float)(rect.getX() + rect.getWidth());
float wrap = (float)map.getWrap();
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if (x >= xMin && x <= xMax && y >= yMin && y <= yMax) return true;
return false;
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476d964e4b060a8357c7d748f3b70c6617835eb1 | iedadata/geomapapp | haxby/db/mgg/MGGData.java | [
"Apache-2.0"
] | Java | tryPopUp | null | public void tryPopUp(MouseEvent evt){
String osName = System.getProperty("os.name");
if ( !evt.isControlDown() ) {
if ( osName.startsWith("Mac OS") && evt.isShiftDown() ) {
pm.show(evt.getComponent(), evt.getX(), evt.getY() );
}
else if ( evt.isPopupTrigger() ) {
pm.show(evt.getComponent(), evt.getX(), evt.getY());
}
}
} | // the current point to the clipboard. | the current point to the clipboard. | [
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] | public void tryPopUp(MouseEvent evt){
String osName = System.getProperty("os.name");
if ( !evt.isControlDown() ) {
if ( osName.startsWith("Mac OS") && evt.isShiftDown() ) {
pm.show(evt.getComponent(), evt.getX(), evt.getY() );
}
else if ( evt.isPopupTrigger() ) {
pm.show(evt.getComponent(), evt.getX(), evt.getY());
}
}
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476d964e4b060a8357c7d748f3b70c6617835eb1 | iedadata/geomapapp | haxby/db/mgg/MGGData.java | [
"Apache-2.0"
] | Java | loadFromDataFile | MGGData | static MGGData loadFromDataFile(XMap map, String leg) throws IOException {
MGGData data = null;
BufferedReader dataIn;
File dataFile;
DataInputStream controlIn;
String name, s;
ArrayList<Double> lon = new ArrayList<Double>();
ArrayList<Double> lat = new ArrayList<Double>();
ArrayList<Float> topo = new ArrayList<Float>();
ArrayList<Float> grav = new ArrayList<Float>();
ArrayList<Float> mag = new ArrayList<Float>();
// First search the control files to find which one contains our data set.
// The control file include the data set name.
// The data file has the same timestamp in the file name, so once we have found
// the control file, we can work out the data file.
if ( MGG.MGG_control_dir.exists() ) {
File[] MGG_control_files = MGG.MGG_control_dir.listFiles();
for ( int m = 0; m < MGG_control_files.length; m++ ) {
if ( MGG_control_files[m].getName().indexOf( "mgg_control" ) != -1 ) {
controlIn = new DataInputStream( new BufferedInputStream( new FileInputStream( MGG_control_files[m] ) ) );
name = "";
try {
name = controlIn.readUTF();
} catch (EOFException ex) {
break;
}
controlIn.close();
if (name.equals(leg)) {
//we have found the right control file, now read the data file
dataFile = new File (MGG.MGG_data_dir, "mgg_data_" + leg);
try {
dataIn = new BufferedReader( new InputStreamReader(new FileInputStream( dataFile )));
} catch (Exception ex) {
continue;
}
while ( ( s = dataIn.readLine() ) != null ) {
StringTokenizer st = new StringTokenizer(s);
String date = st.nextToken(); //don't need this
lon.add(Double.parseDouble(st.nextToken()));
lat.add(Double.parseDouble(st.nextToken()));
topo.add(Float.parseFloat(st.nextToken()));
grav.add(Float.parseFloat(st.nextToken()));
mag.add(Float.parseFloat(st.nextToken()));
}
dataIn.close();
//create the MGDData structure (need to convert the arrayLists to arrays first)
data = new MGGData( map, leg, GeneralUtils.arrayList2doubles(lon), GeneralUtils.arrayList2doubles(lat),
GeneralUtils.arrayList2floats(topo), GeneralUtils.arrayList2floats(grav), GeneralUtils.arrayList2floats(mag));
}
}
}
}
return data;
} | /*
* for imported data sets, load from the data file stored on the user's hard drive
*/ | for imported data sets, load from the data file stored on the user's hard drive | [
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] | static MGGData loadFromDataFile(XMap map, String leg) throws IOException {
MGGData data = null;
BufferedReader dataIn;
File dataFile;
DataInputStream controlIn;
String name, s;
ArrayList<Double> lon = new ArrayList<Double>();
ArrayList<Double> lat = new ArrayList<Double>();
ArrayList<Float> topo = new ArrayList<Float>();
ArrayList<Float> grav = new ArrayList<Float>();
ArrayList<Float> mag = new ArrayList<Float>();
if ( MGG.MGG_control_dir.exists() ) {
File[] MGG_control_files = MGG.MGG_control_dir.listFiles();
for ( int m = 0; m < MGG_control_files.length; m++ ) {
if ( MGG_control_files[m].getName().indexOf( "mgg_control" ) != -1 ) {
controlIn = new DataInputStream( new BufferedInputStream( new FileInputStream( MGG_control_files[m] ) ) );
name = "";
try {
name = controlIn.readUTF();
} catch (EOFException ex) {
break;
}
controlIn.close();
if (name.equals(leg)) {
dataFile = new File (MGG.MGG_data_dir, "mgg_data_" + leg);
try {
dataIn = new BufferedReader( new InputStreamReader(new FileInputStream( dataFile )));
} catch (Exception ex) {
continue;
}
while ( ( s = dataIn.readLine() ) != null ) {
StringTokenizer st = new StringTokenizer(s);
String date = st.nextToken();
lon.add(Double.parseDouble(st.nextToken()));
lat.add(Double.parseDouble(st.nextToken()));
topo.add(Float.parseFloat(st.nextToken()));
grav.add(Float.parseFloat(st.nextToken()));
mag.add(Float.parseFloat(st.nextToken()));
}
dataIn.close();
data = new MGGData( map, leg, GeneralUtils.arrayList2doubles(lon), GeneralUtils.arrayList2doubles(lat),
GeneralUtils.arrayList2floats(topo), GeneralUtils.arrayList2floats(grav), GeneralUtils.arrayList2floats(mag));
}
}
}
}
return data;
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] | [
{
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"type": "XMap"
},
{
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}
] | {
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"raises": [],
"params": [
{
"identifier": "map",
"type": "XMap",
"docstring": null,
"docstring_tokens": [],
"default": null,
"is_optional": null
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daf5396ce61f1e4e971fac0ddfd95d91386cb8f9 | iedadata/geomapapp | haxby/db/pdb/PDBSampleModel.java | [
"Apache-2.0"
] | Java | sortByColumn | null | public synchronized void sortByColumn(int col) {
if (lastSortedCol == col)
ascent = !ascent;
else
ascent = true;
lastSortedCol = col;
Collections.sort(samples, columnSorter);
updateSampleIndexMap();
fireTableDataChanged();
} | // Sorts on column col, alternating between ascent and descent | Sorts on column col, alternating between ascent and descent | [
"Sorts",
"on",
"column",
"col",
"alternating",
"between",
"ascent",
"and",
"descent"
] | public synchronized void sortByColumn(int col) {
if (lastSortedCol == col)
ascent = !ascent;
else
ascent = true;
lastSortedCol = col;
Collections.sort(samples, columnSorter);
updateSampleIndexMap();
fireTableDataChanged();
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"type": "int"
}
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"raises": [],
"params": [
{
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"type": "int",
"docstring": null,
"docstring_tokens": [],
"default": null,
"is_optional": null
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68fd99c9178f42cdb6a30101d6cbbeb6d8eb7417 | iedadata/geomapapp | haxby/db/xmcs/XMCS.java | [
"Apache-2.0"
] | Java | checkListForProjection | null | private boolean checkListForProjection(String listPath) {
URL url;
try {
url = URLFactory.url(listPath);
BufferedReader in = new BufferedReader( new InputStreamReader(url.openStream()));
String inStr;
while ((inStr = in.readLine()) != null) {
String[] split = inStr.split("\t");
if (split.length != 6) continue; // improper entry
int mapType = MapApp.MERCATOR_MAP;
if (map.getApp() instanceof MapApp)
mapType =((MapApp) map.getApp()).getMapType();
try {
int cruiseType = Integer.parseInt(split[1]);
switch (mapType) {
case MapApp.MERCATOR_MAP:
if ((cruiseType & MERCATOR_MAP) != 0) return true;
break;
case MapApp.SOUTH_POLAR_MAP:
if ((cruiseType & SOUTH_POLAR_MAP) != 0) return true;
break;
case MapApp.NORTH_POLAR_MAP:
if ((cruiseType & NORTH_POLAR_MAP) != 0) return true;
break;
}
} catch (NumberFormatException ex) {
return false;
}
}
} catch (Exception e) {
return false;
}
return false;
} | /*
* check the cruise list to see if it contains cruises for the current
* map projection
*/ | check the cruise list to see if it contains cruises for the current
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626a6895ee8b9c3da8e8a876def4e5b57a0c4f7e | iedadata/geomapapp | haxby/db/ship/ShipTrack.java | [
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] | Java | hasAllKeywords | null | public boolean hasAllKeywords(ArrayList<String> keys)
{
for(String key:keys)
{
if((keywords.contains(key.toLowerCase()))==false)
return false;
}
return true;
} | /*Checks to see if a Ship has all of the keywords contained in the argument*/ | Checks to see if a Ship has all of the keywords contained in the argument | [
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a5fcf797454b948fa1d2763a7b86d452b5d2eedd | iedadata/geomapapp | haxby/db/dig/LineSegmentsObject.java | [
"Apache-2.0"
] | Java | updatePoints | null | protected void updatePoints() {
for (Object point : points) {
double[] xyz = (double[])point;
Point2D.Double p = new Point2D.Double(xyz[0], xyz[1]);
xyz[2] = getZ(p);
}
} | //update z-values for points | update z-values for points | [
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"points"
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for (Object point : points) {
double[] xyz = (double[])point;
Point2D.Double p = new Point2D.Double(xyz[0], xyz[1]);
xyz[2] = getZ(p);
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eb29f49f25a5bbbdbc2f6aa6e039d725c1744bfd | iedadata/geomapapp | haxby/util/PathUtil.java | [
"Apache-2.0"
] | Java | loadNewPaths | null | public static void loadNewPaths(String path) {
keyToURL2 = new HashMap<String, String>();
try {
DocumentBuilderFactory dbf = DocumentBuilderFactory.newInstance();
dbf.setIgnoringComments(true);
DocumentBuilder db = dbf.newDocumentBuilder();
Document dom = db.parse( URLFactory.url(path).openStream() );
Node root = getElement(dom, "GMA_paths");
for (Node layer : getElements(root, "layer"))
addLayer(layer, null);
} catch (IOException ex) {
ex.printStackTrace();
} catch (ParserConfigurationException e) {
e.printStackTrace();
} catch (SAXException e) {
e.printStackTrace();
}
String rootPath = getPath("ROOT_PATH", MapApp.BASE_URL);
for (String key : keyToURL2.keySet()) {
String url = keyToURL2.get(key);
System.out.println("np url"+ url);
if (url.contains("http://"))
continue;
keyToURL2.put(key, rootPath + url);
}
} | // Loads another GMA paths file from another location
| Loads another GMA paths file from another location | [
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] | public static void loadNewPaths(String path) {
keyToURL2 = new HashMap<String, String>();
try {
DocumentBuilderFactory dbf = DocumentBuilderFactory.newInstance();
dbf.setIgnoringComments(true);
DocumentBuilder db = dbf.newDocumentBuilder();
Document dom = db.parse( URLFactory.url(path).openStream() );
Node root = getElement(dom, "GMA_paths");
for (Node layer : getElements(root, "layer"))
addLayer(layer, null);
} catch (IOException ex) {
ex.printStackTrace();
} catch (ParserConfigurationException e) {
e.printStackTrace();
} catch (SAXException e) {
e.printStackTrace();
}
String rootPath = getPath("ROOT_PATH", MapApp.BASE_URL);
for (String key : keyToURL2.keySet()) {
String url = keyToURL2.get(key);
System.out.println("np url"+ url);
if (url.contains("http://"))
continue;
keyToURL2.put(key, rootPath + url);
}
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] | [] | [
{
"param": "path",
"type": "String"
}
] | {
"returns": [],
"raises": [],
"params": [
{
"identifier": "path",
"type": "String",
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"default": null,
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eb29f49f25a5bbbdbc2f6aa6e039d725c1744bfd | iedadata/geomapapp | haxby/util/PathUtil.java | [
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for (Map.Entry<String, String> entry : keyToURL.entrySet()) {
entry.setValue(entry.getValue().replace(placeHolder, var));
}
} | /*
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b4c00dfedb7e539a0727a75d146f5c309e50732a | iedadata/geomapapp | haxby/db/surveyplanner/SurveyPlannerDataDisplay.java | [
"Apache-2.0"
] | Java | saveToFile | null | private void saveToFile() {
JFileChooser jfc = new JFileChooser(System.getProperty("user.home"));
File f=new File("SurveyLines.txt");
jfc.setSelectedFile(f);
do {
int c = jfc.showSaveDialog(null);
if (c==JFileChooser.CANCEL_OPTION||c==JFileChooser.ERROR_OPTION) return;
f = jfc.getSelectedFile();
if (f.exists()) {
c=JOptionPane.showConfirmDialog(null, "File Already Exists\nConfirm Overwrite");
if (c==JOptionPane.OK_OPTION) break;
if (c==JOptionPane.CANCEL_OPTION) return;
}
} while (f.exists());
try {
BufferedWriter out = new BufferedWriter(new FileWriter(f));
//add disclaimer at the top of the output file
out.write("#NOT TO BE USED FOR NAVIGATION PURPOSES\n");
boolean firstCol = true;
for (int i=0;i<tm.getColumnCount();i++) {
if (i == sp.getSurveyLineColumn()) continue;
if (firstCol) {
out.write(tm.getColumnName(i));
firstCol = false;
} else {
out.write("\t" + tm.getColumnName(i));
}
}
out.write("\n");
int[] ind;
ind = new int[tm.getRowCount()];
for (int i=0; i<tm.getRowCount(); i++) ind[i] = i;
for (int i=0;i<tm.getRowCount();i++) {
firstCol = true;
for (int j=0; j<tm.getColumnCount();j++) {
if (j == sp.getSurveyLineColumn()) continue;
Object o = tm.getValueAt(i, j);
if (o instanceof String && ((String)o).equals("NaN")) o = "";
if (firstCol) {
out.write(o.toString());
firstCol = false;
} else {
out.write("\t"+ o);
}
}
out.write("\n");
}
out.close();
} catch (IOException e){
JOptionPane.showMessageDialog(panel, "Unable to save file", "Save Error", JOptionPane.ERROR_MESSAGE);
System.out.println(e);
}
} | /*
* save the survey lines to a text file
*/ | save the survey lines to a text file | [
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] | private void saveToFile() {
JFileChooser jfc = new JFileChooser(System.getProperty("user.home"));
File f=new File("SurveyLines.txt");
jfc.setSelectedFile(f);
do {
int c = jfc.showSaveDialog(null);
if (c==JFileChooser.CANCEL_OPTION||c==JFileChooser.ERROR_OPTION) return;
f = jfc.getSelectedFile();
if (f.exists()) {
c=JOptionPane.showConfirmDialog(null, "File Already Exists\nConfirm Overwrite");
if (c==JOptionPane.OK_OPTION) break;
if (c==JOptionPane.CANCEL_OPTION) return;
}
} while (f.exists());
try {
BufferedWriter out = new BufferedWriter(new FileWriter(f));
out.write("#NOT TO BE USED FOR NAVIGATION PURPOSES\n");
boolean firstCol = true;
for (int i=0;i<tm.getColumnCount();i++) {
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firstCol = false;
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out.write("\t" + tm.getColumnName(i));
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firstCol = true;
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out.write("\t"+ o);
}
}
out.write("\n");
}
out.close();
} catch (IOException e){
JOptionPane.showMessageDialog(panel, "Unable to save file", "Save Error", JOptionPane.ERROR_MESSAGE);
System.out.println(e);
}
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twoDec.setGroupingUsed(false);
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f2e4de63f50740f88f572088a6cd7238eeddfb7b | iedadata/geomapapp | haxby/db/custom/CustomDB.java | [
"Apache-2.0"
] | Java | save | null | public void save() {
if ( save.getSelectedItem() == "Copy Selection to Clipboard" ) {
copy();
}else if ( save.getSelectedItem() == " -Table Data to ASCII File" ) {
exportASCII("all");
}else if ( save.getSelectedItem() == " -Table Data to Excel File (.xls)" ) {
exportExcel("all");
}else if ( save.getSelectedItem() == " -Table Data to Excel File (.xlsx)" ) {
exportExcelXLSX("all");
}else if ( save.getSelectedItem() == " -Plotted Data to ASCII File" ) {
exportASCII("plottable");
}else if ( save.getSelectedItem() == " -Plotted Data to Excel File (.xls)" ) {
exportExcel("plottable");
}else if ( save.getSelectedItem() == " -Plotted Data to Excel File (.xlsx)" ) {
exportExcelXLSX("plottable");
}else if ( save.getSelectedItem() == " -Selection to ASCII File" ) {
exportASCII("selection");
}else if ( save.getSelectedItem() == " -Selection to Excel File (.xls)" ) {
exportExcel("selection");
}else if ( save.getSelectedItem() == " -Selection to Excel File (.xlsx)" ) {
exportExcelXLSX("selection");
}else if (save.getSelectedItem() == " -Table Data to Google Earth (KMZ)") {
exportKML("all");
}else if (save.getSelectedItem() == " -Plotted Data to Google Earth (KMZ)") {
exportKML("plottable");
}else if (save.getSelectedItem() == " -Selection to Google Earth (KMZ)") {
exportKML("selection");
}
save.setSelectedIndex(0); // JOC: This will now return the save combo selection back to "Save"
} | // ***** GMA 1.4.8: The save() function checks the option selected from the save combo box and invokes the appropriate save function
| GMA 1.4.8: The save() function checks the option selected from the save combo box and invokes the appropriate save function | [
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copy();
}else if ( save.getSelectedItem() == " -Table Data to ASCII File" ) {
exportASCII("all");
}else if ( save.getSelectedItem() == " -Table Data to Excel File (.xls)" ) {
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exportKML("plottable");
}else if (save.getSelectedItem() == " -Selection to Google Earth (KMZ)") {
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save.setSelectedIndex(0);
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] | [] | {
"returns": [],
"raises": [],
"params": [],
"outlier_params": [],
"others": []
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f2e4de63f50740f88f572088a6cd7238eeddfb7b | iedadata/geomapapp | haxby/db/custom/CustomDB.java | [
"Apache-2.0"
] | Java | togglePlotAll | null | public void togglePlotAll() {
UnknownDataSet d = (UnknownDataSet) box.getSelectedItem();
if ( plotAllB.isSelected() ) {
d.rememberPlottableStatus();
d.makeAllPlottable();
} else {
d.revertToOldPlottableStatus();
}
map.moveOverlayToTop(d);
d.dataT.repaint();
map.repaint();
} | //toggle between plotting all datapoints and only the ones that the user has selected
| toggle between plotting all datapoints and only the ones that the user has selected | [
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UnknownDataSet d = (UnknownDataSet) box.getSelectedItem();
if ( plotAllB.isSelected() ) {
d.rememberPlottableStatus();
d.makeAllPlottable();
} else {
d.revertToOldPlottableStatus();
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map.moveOverlayToTop(d);
d.dataT.repaint();
map.repaint();
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7cf4dc0f86a6ff1246c8f7a658013b39d01d5502 | iedadata/geomapapp | haxby/db/pdb/PDBAnalysisModel.java | [
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if (lastSortedCol == col)
ascent = !ascent;
else
ascent = true;
lastSortedCol = col;
Collections.sort(analyses, columnSorter);
updateAnalysisIndexMap();
fireTableDataChanged();
} | // Sorts on column col, alternating between ascent and descent | Sorts on column col, alternating between ascent and descent | [
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if (lastSortedCol == col)
ascent = !ascent;
else
ascent = true;
lastSortedCol = col;
Collections.sort(analyses, columnSorter);
updateAnalysisIndexMap();
fireTableDataChanged();
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b0157fed8ae290d96d96ff0a66f05f81bffecba9 | iedadata/geomapapp | haxby/map/MapApp.java | [
"Apache-2.0"
] | Java | loadSessionCustomMainMenu | null | public void loadSessionCustomMainMenu() {
//Retrieving XML main menus
String mainMenuURL = System.getProperty("geomapapp.menus_url");
// Check to make sure xml files are in layers dir.
File customMenuURL = new File(layerSessionDir, "SessionsMenu.xml");
File sessionsFile = new File(layerSessionDir, "MySessions.xml");
if (mainMenuURL == null) {
//mainMenuURL = PathUtil.getPath("MENU_PATH",MapApp.BASE_URL+"/gma_menus/main_menu.xml"); // 3.5.2 and older
mainMenuURL = PathUtil.getPath("NEW_MENU_PATH_2015",MapApp.BASE_URL+"/gma_menus/main_menu_new_2015.xml");
}
if(!customMenuURL.exists()) {
//Check and create.
LayerManager.checkLayerFileStructure();
}
try {
XML_Menu.setMapApp(this);
menuBar = XML_Menu.createMainMenuBars(XML_Menu.parse(mainMenuURL),XML_Menu.parse(customMenuURL));
frame.setJMenuBar(menuBar);
//Delete the tmp Session file
File tmp = new File(layerSessionDir + File.separator + "MySessions.xml.tmp");
if (tmp.exists() && !tmp.delete()) {
System.out.println("Could not delete file");
return;
}
} catch (MalformedURLException e1) {
e1.printStackTrace();
} catch (IOException e1) {
e1.printStackTrace();
} catch (ParserConfigurationException e1) {
e1.printStackTrace();
} catch (SAXException e1) {
e1.printStackTrace();
}
} | // Loads custom GMA regular XML menu | Loads custom GMA regular XML menu | [
"Loads",
"custom",
"GMA",
"regular",
"XML",
"menu"
] | public void loadSessionCustomMainMenu() {
String mainMenuURL = System.getProperty("geomapapp.menus_url");
File customMenuURL = new File(layerSessionDir, "SessionsMenu.xml");
File sessionsFile = new File(layerSessionDir, "MySessions.xml");
if (mainMenuURL == null) {
mainMenuURL = PathUtil.getPath("NEW_MENU_PATH_2015",MapApp.BASE_URL+"/gma_menus/main_menu_new_2015.xml");
}
if(!customMenuURL.exists()) {
LayerManager.checkLayerFileStructure();
}
try {
XML_Menu.setMapApp(this);
menuBar = XML_Menu.createMainMenuBars(XML_Menu.parse(mainMenuURL),XML_Menu.parse(customMenuURL));
frame.setJMenuBar(menuBar);
File tmp = new File(layerSessionDir + File.separator + "MySessions.xml.tmp");
if (tmp.exists() && !tmp.delete()) {
System.out.println("Could not delete file");
return;
}
} catch (MalformedURLException e1) {
e1.printStackTrace();
} catch (IOException e1) {
e1.printStackTrace();
} catch (ParserConfigurationException e1) {
e1.printStackTrace();
} catch (SAXException e1) {
e1.printStackTrace();
}
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] | [] | {
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"outlier_params": [],
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b0157fed8ae290d96d96ff0a66f05f81bffecba9 | iedadata/geomapapp | haxby/map/MapApp.java | [
"Apache-2.0"
] | Java | accessDatabaseMenuItems | null | public void accessDatabaseMenuItems(final String accessItem) {
for( int i=0 ; i<db.length ; i++) {
if( accessItem.equals( db[i].getDBName()) ) {
final Database database = db[i];
addProcessingTask(database.getDBName(), new Runnable() {
public void run() {
Runtime rt = Runtime.getRuntime();
long free = rt.freeMemory()/1024/1024;
long total = rt.totalMemory()/1024/1024;
System.out.println("before:\t" + free +" MB Free,\t" + (total-free) +" MB used");
if(database.loadDB()) {
disableCurrentDB();
currentDB = database;
currentDB.setEnabled(true);
addCurrentDBToDisplay();
while( map.hasOverlay( database ) ) {
map.removeOverlay(database);
}
map.addOverlay(database.getDBName(), database );
}
free = rt.freeMemory()/1024/1024;
total = rt.totalMemory()/1024/1024;
System.out.println("after:\t" + free +" MB Free,\t" + (total-free) +" MB used");
map.repaint();
}
});
}
}
if ( accessItem == "Drilling-DSDP/ODP/BRG" ) {
showDSDP();
}
} | // ***** GMA 1.5.2: Add function to access "Database" menu menu items | GMA 1.5.2: Add function to access "Database" menu menu items | [
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for( int i=0 ; i<db.length ; i++) {
if( accessItem.equals( db[i].getDBName()) ) {
final Database database = db[i];
addProcessingTask(database.getDBName(), new Runnable() {
public void run() {
Runtime rt = Runtime.getRuntime();
long free = rt.freeMemory()/1024/1024;
long total = rt.totalMemory()/1024/1024;
System.out.println("before:\t" + free +" MB Free,\t" + (total-free) +" MB used");
if(database.loadDB()) {
disableCurrentDB();
currentDB = database;
currentDB.setEnabled(true);
addCurrentDBToDisplay();
while( map.hasOverlay( database ) ) {
map.removeOverlay(database);
}
map.addOverlay(database.getDBName(), database );
}
free = rt.freeMemory()/1024/1024;
total = rt.totalMemory()/1024/1024;
System.out.println("after:\t" + free +" MB Free,\t" + (total-free) +" MB used");
map.repaint();
}
});
}
}
if ( accessItem == "Drilling-DSDP/ODP/BRG" ) {
showDSDP();
}
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{
"param": "accessItem",
"type": "String"
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"raises": [],
"params": [
{
"identifier": "accessItem",
"type": "String",
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b0157fed8ae290d96d96ff0a66f05f81bffecba9 | iedadata/geomapapp | haxby/map/MapApp.java | [
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] | Java | addShapeFile | null | public void addShapeFile(String layerURL) {
try {
tools.suite.addShapeFile(layerURL);
if ( !tools.shapeTB.isSelected() ) {
tools.shapeTB.doClick();
}
else {
tools.shapes.setVisible(true);
}
initializeColorScale();
} catch (IOException e) {
e.printStackTrace();
}
} | // GMA 1.5.2: Get tools.suite.layers for the layer tree to give to data portal | GMA 1.5.2: Get tools.suite.layers for the layer tree to give to data portal | [
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try {
tools.suite.addShapeFile(layerURL);
if ( !tools.shapeTB.isSelected() ) {
tools.shapeTB.doClick();
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b0157fed8ae290d96d96ff0a66f05f81bffecba9 | iedadata/geomapapp | haxby/map/MapApp.java | [
"Apache-2.0"
] | Java | autoFocus | null | public void autoFocus() {
synchronized (autoFocusLock) {
if (focusTime == -1) {
focusTime = System.currentTimeMillis() + AUTO_FOCUS_WAIT;
Thread t =new Thread("Focus Thread" + focusTime) {
public void run() {
while (System.currentTimeMillis() < focusTime)
try {
sleep(200);
} catch (InterruptedException e) {
e.printStackTrace();
}
if (focusTime!=-1) {
mapFocus();
}
}
};
t.setDaemon(true);
t.start();
} else{
focusTime = System.currentTimeMillis() + AUTO_FOCUS_WAIT;
}
}
} | /**
* Adds another request for an autofocus.
* MapApp will wait AUTO_FOCUS_WAIT ms until focusing
* MapApp will only autofocus if the autoFocus Check box is selected
* If autoFocus() is called while waiting the timer will be set back to 0
* and wait another AUTO_FOCUS_WAIT seconds
*/ | Adds another request for an autofocus.
MapApp will wait AUTO_FOCUS_WAIT ms until focusing
MapApp will only autofocus if the autoFocus Check box is selected
If autoFocus() is called while waiting the timer will be set back to 0
and wait another AUTO_FOCUS_WAIT seconds | [
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synchronized (autoFocusLock) {
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focusTime = System.currentTimeMillis() + AUTO_FOCUS_WAIT;
Thread t =new Thread("Focus Thread" + focusTime) {
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} catch (InterruptedException e) {
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if (focusTime!=-1) {
mapFocus();
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t.setDaemon(true);
t.start();
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focusTime = System.currentTimeMillis() + AUTO_FOCUS_WAIT;
}
}
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"returns": [],
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b0157fed8ae290d96d96ff0a66f05f81bffecba9 | iedadata/geomapapp | haxby/map/MapApp.java | [
"Apache-2.0"
] | Java | clearCache | null | protected static void clearCache(File file) throws IOException {
if(file.isDirectory()) {
//directory is empty, then delete it
if(file.list().length==0) {
file.delete();
} else {
//List all the directory contents
String files[] = file.list();
for (String temp : files) {
//Construct the file structure
File fileDelete = new File(file, temp);
//Recursive delete
clearCache(fileDelete);
}
//Check the directory again, if empty then delete it
if(file.list().length==0) {
file.delete();
//System.out.println("Removed Cache directory: " + file.getAbsolutePath());
}
}
} else {
//if file, then delete it
file.delete();
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for (String temp : files) {
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b0157fed8ae290d96d96ff0a66f05f81bffecba9 | iedadata/geomapapp | haxby/map/MapApp.java | [
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] | Java | addCurrentDBToDisplay | null | public void addCurrentDBToDisplay() {
final Database cDB = currentDB;
// if (cDB == null) return;
SwingUtilities.invokeLater(new Runnable() {
public void run() {
dbLabel.setText( cDB.getDBName() );
dialog.add( cDB.getSelectionDialog(), "Center");
hPane.setRightComponent( dialogScroll );
if( cDB.getSelectionDialog() != null ) {
int w = cDB.getSelectionDialog().getPreferredSize().width;
hPane.setDividerLocation( hPane.getSize().width - w
-hPane.getDividerSize() );
}
if( cDB.getDataDisplay() != null ) {
int h = cDB.getDataDisplay().getPreferredSize().height;
detach_attachB.setEnabled( h > 50 );
if (attached || h < 50) {
//Attaches Tables spreadsheet under the main map.
attachDisplay();
}
else {
detachDisplay();
}
} else {
detach_attachB.setEnabled(false);
}
}
});
} | // Displays Side bar of current DB | Displays Side bar of current DB | [
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final Database cDB = currentDB;
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dbLabel.setText( cDB.getDBName() );
dialog.add( cDB.getSelectionDialog(), "Center");
hPane.setRightComponent( dialogScroll );
if( cDB.getSelectionDialog() != null ) {
int w = cDB.getSelectionDialog().getPreferredSize().width;
hPane.setDividerLocation( hPane.getSize().width - w
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}
if( cDB.getDataDisplay() != null ) {
int h = cDB.getDataDisplay().getPreferredSize().height;
detach_attachB.setEnabled( h > 50 );
if (attached || h < 50) {
attachDisplay();
}
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detachDisplay();
}
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detach_attachB.setEnabled(false);
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