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Is this Pathogen-Detect from the paper?

#2
by monsoon-nlp - opened

hoping to confirm that this is Pathogen-Detect-1 through -4 from the paper, and the label 1 means infectious

METAGENE 路 Metagenomic Foundation Model org

This dataset is not the Pathogen-Detect dataset, but instead one sub-task of the Genomic Embedding/Gene-MTEB dataset (from Section 5.3 of the paper).

See here for the full GENE-MTEB collection, which we are in the process of releasing: https://huggingface.co/collections/metagene-ai/gene-mteb-677b57d06f370093aac45860

(However, once the Pathogen-Detect datasets are able to made publicly available, we will add them to Hugging Face as well!).

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