Source: https://www.fbras.ru/en/napravleniya-nauchnyx-issledovanij/publikacii
Timestamp: 2019-04-21 05:02:35+00:00

Document:
Publications of the Federal Research Centre RAS | Federal Research Centre "Fundamentals of Biotechnology"
Skryabin K, Ravin N, Mardanov A, Beletsky A, Salina E, Rakitin A, Kadnikov V, Abrouk M, Alfama F, Adam-Blondon AF, Alberti A, Aury JM, Alaux M, Akpinar BA, Arnaud D, Appels R, Batley J, Bayer PE, Barad O, Baruch K, Balfourier F, Borrill P, Ben-Zvi G, Bartoš J, Barabaschi D, Budak H, Belova T, Biyiklioglu S, Benhamed M, Bendahmane A, Bellec A, Berges H, Balcárková B, Barbe V, Couloux A, Cruaud C, Condie J, Choulet F, Chhuneja P, Chaudhary C, Clark MD, Concia L, Číhalíková J, Čížková J, Cuthbert R, Cattivelli L, Cattonaro F, Cui L, Chalabi S, Chalhoub B, Cory A, Datla R, Du X, Davey MW, Distelfeld A, Darrier B, Doležel J, Edwards D, Eversole K, Ens J, Feng K, Fischer I, Felder M, Frenkel Z, Fahima T, Feuillet C, Flores R, Glikson V, Galvez S, Golds T, Gao L, Gutierrez-Gonzalez J, Guerche C, Gupta OP, Guilhot N, Gundlach H, Haberer G, Himmelbach A, Holušová K, Heavens D, Hayashi S, Hayden M, Handa H, Hernandez P, Hu Y, Jones JDG, Jindal S, Josselin AA, Juhász A, Jacobs J, Jiumeng M, Kanyuka K, King R, Knox R, Kubaláková M, Khurana J, Khurana P, Kaur G, Kaur P, Kaithakottil G, Katagiri S, Kanamori H, Kumar V, Keeble-Gagnère G, Keller B, Koh C, Korol A, Kobayashi F, Kugler K, Kettleborough G, Keilwagen J, Latrasse D, Letellier T, Loaec M, Labadie K, Luo M, Leroy P, Lux T, Mascher M, Melonek J, Maclachlan R, Mangenot S, Malik P, Mahato A, Mathur S, Mayer KFX, Muehlbauer G, Nilsen K, N’Daiye A, Nesterov M, Nasuda S, Nie X, Ormanbekova D, Olsen OA, Pozniak CJ, Prade V, Pasam RK, Poland J, Paux E, Plíhal O, Pfeifer M, Quesneville H, Rimbert H, Ramirez-Gonzalez RH, Rigault P, Rogers J, Robinson SJ, Ronen G, Raats D, Rohde A, Sehgal S, Singh NK, Spannagl M, Stein N, Sevanthi A, Sharma N, Sharma P, Steuernagel B, Swarbreck D, Sharpe AG, Singh K, Sourdille P, Small I, Šafář J, Sergeeva E, Sandve S, Tibbits J, Tiwari V, Twardziok S, Toegelová H, Tan Y, Tomar RS, Tulpová Z, Tanaka T, Tong W, Uauy C, van Ex F, Venturini L, Visendi P, Valárik M, van der Vossen E, Vautrin S, Vrána J, Walkowiak S, Wu J, Wright J, Wincker P, Wang L, Witek K, Weining S, Wulff BBH, Wiebe K, Xiang D, Xun X, Yu G, Yadav B, Zhan B, Zhou R. Shifting the limits in wheat research and breeding using a fully annotated reference genome. // Science, 2018, v. 361, #6403, p. 1-16 (doi 10.1126/science.aar7191).
Machiela M.J, Hofmann J.N., Carreras-T.orres R., Brown K.M., Johansson M., Wang Z., Foll M., Li P., Rothman N., Savage S.A., Gaborieau V., McKay J.D., Ye Y., Henrion M., Bruinsma F., Jordan S., Severi G., Hveem K., Vatten L.J., Fletcher T., Koppova K., Larsson S.C., Wolk A., Banks R.E., Selby P.J., Easton D.F., Pharoah P., Andreotti G., Freeman L.E.B., Koutros S., Albanes D., Mannisto S., Weinstein S., Clark P.E., Edwards T.E., Lipworth L., Gapstur S.M., Stevens V.L., Carol H., Freedman M.L., Pomerantz M.M., Cho E., Kraft P., Preston M.A., Wilson K.M., Gaziano J.M., Sesso H.S., Black A., Freedman N.D., Huang W.Y., Anema J.G., Kahnoski R.J., Lane B.R., Noyes S.L., Petillo D., Colli L.M., Sampson J.N., Besse C., Blanche H., Boland A., Burdette L., Prokhortchouk E., Skryabin K.G., Yeager M., Mijuskovic M., Ognjanovic M., Foretova L., Holcatova I., Janout V., Mates D., Mukeriya A., Rascu S., Zaridze D., Bencko V., Cybulski C., Fabianova E., Jinga V., Lissowska J., Lubinski J., Navratilova M., Rudnai P., Szeszenia-Dabrowska N., Benhamou S., Cancel-Tassin G., Cussenot O., Bueno-de-Mesquita H.B.A., Canzian F., Duell E.J., Ljungberg B., Sitaram R.T., Peters U., White E., Anderson G.L., Johnson L., Luo J., Buring J., Lee I.M., Chow W.H., Moore L.E., Wood C., Eisen T., Larkin J., Choueiri T.K., Lathrop G.M., Teh B.T., Deleuze J.F., Wu X., Houlston R.S., Brennan P., Chanock S.J., Scelo G., Purdue M.P. Corrigendumre “Genetic Variants Related to Longer Telomere Length are Associated with Increased Risk of Renal Cell Carcinoma”. // European Urology, 2018, v. 74, p. 84-85 (doi 10.1016/j.eururo.2018.05.017).
Nikolai N. Sluchanko, Yury B. Slonimskiy, Evgeny A. Shirshin, Marcus Moldenhauer, Thomas Friedrich, Eugene G. Maksimov. OCP-FRP protein complex topologies suggest a mechanism for controlling high light tolerance in cyanobacteria. // Nature Communications, 2018, v. 9, p. 1-15 (doi 10.1038/s41467-018-06195-0).
Abdullah M Khamis, Olaa Motwalli, Oliva Romina, Boris R Jankovic, Yulia A Medvedeva, Magbubah Essack, Xin Gao, Vladimir B Bajic. A novel method for improved accuracy of transcription factor binding site prediction. // Nucleic Acids Research, 2018, v. 46, # 12, art. е72 (doi.org/10.1093/nar/gky237).
Wohlgemuth R, Littlechild J, Monti D, Schnorr K, van Rossum T, Siebers B, Menzel P, Kublanov IV, Rike AG, Skretas G, Szabo Z, Peng X, Young MJ. Discovering novel hydrolases from hot environments, // Biotechnology Advances, 2018, v. 36, #8, p. 2077‑2100 (doi 10.1016/j.biotechadv.2018.09.004).
Vavourakis C.D., Andrei A.-S., Mehrshad M., Ghai R., Sorokin D.Y., Muyzer G. A metagenomics roadmap to the uncultured genome diversity in hypersaline soda lake sediments. // Microbiome, 2018, v. 6, p. 1-18 (doi.org/10.1186/s40168-018-0548-7:).
Bobrowski T, Arribas EG, Ludwig R, Toscano MD, Shleev S, Schuhmann W. Rechargeable, flexible and mediator-free biosupercapacitor based on transparent ITO nanoparticle modified electrodes acting in mu M glucose containing buffers. // Biosensors and Bioelectronics, 2018, v. 101, p. 84-89 (doi 10.1016/j.bios.2017.10.016).
Talan A., Mishra A., Eremin S.A., Narang J., Kumar A., Gandhi S. Ultrasensitive electrochemical immuno-sensing platform based on gold nanoparticles triggering chlorpyrifos detection in fruits and vegetables. // Biosensors and Bioelectronics. 2018, v. 105, p. 14-21 (doi 10.1016/j.bios.2018.01.013).
Kits K.D., Sedlacek C.J., Lebedeva E.V., Han P., Bulaev A., Pjevac P., Daebeler A., Romano S., Albertsen M., Stein L.Y., Daims H., Wagner M. Kinetic analysis of a complete nitrifier reveals an oligotrophic lifestyle. // Nature. 2017, v. 549, № 7671, p. 269-272.
Chung-Chau Hon, Jordan A Ramilowski, Jayson Harshbarger, Nicolas Bertin, Owen JL Rackham, Julian Gough, Elena Denisenko, Sebastian Schmeier, Thomas M Poulsen, Jessica Severin, Marina Lizio, Hideya Kawaji, Takeya Kasukawa, Masayoshi Itoh, A Maxwell Burroughs, Shohei Noma, Sarah Djebali, Tanvir Alam, Yulia A Medvedeva, Alison C Testa, Leonard Lipovich, Chi-Wai Yip, Imad Abugessaisa, Mickaël Mendez, Akira Hasegawa, Dave Tang, Timo Lassmann, Peter Heutink, Magda Babina, Christine A Wells, Soichi Kojima, Yukio Nakamura, Harukazu Suzuki, Carsten O Daub, Michiel JL de Hoon, Erik Arner, Yoshihide Hayashizaki, Piero Carninci, Alistair RR Forrest. An atlas of human long non-coding RNAs with accurate 5′ ends. // Nature. 2017, v. 543, № 7644, p. 199-204.
Derek de Rie, Imad Abugessaisa, Tanvir Alam, Erik Arner, Peter Arner, Haitham Ashoor, Gaby Åström, Magda Babina, Nicolas Bertin, A Maxwell Burroughs, Ailsa J Carlisle, Carsten O Daub, Michael Detmar, Ruslan Deviatiiarov, Alexandre Fort, Claudia Gebhard, Daniel Goldowitz, Sven Guhl, Thomas J Ha, Jayson Harshbarger, Akira Hasegawa, Kosuke Hashimoto, Meenhard Herlyn, Peter Heutink, Kelly J Hitchens, Chung Chau Hon, Edward Huang, Yuri Ishizu, Chieko Kai, Takeya Kasukawa, Peter Klinken, Timo Lassmann, Charles-Henri Lecellier, Weonju Lee, Marina Lizio, Vsevolod Makeev, Anthony Mathelier, Yulia A Medvedeva, Niklas Mejhert, Christopher J Mungall, Shohei Noma, Mitsuhiro Ohshima, Mariko Okada-Hatakeyama, Helena Persson, Patrizia Rizzu, Filip Roudnicky, Pål Sætrom, Hiroki Sato, Jessica Severin, Jay W Shin, Rolf K Swoboda, Hiroshi Tarui, Hiroo Toyoda, Kristoffer Vitting-Seerup, Louise Winteringham, Yoko Yamaguchi, Kayoko Yasuzawa, Misako Yoneda, Noriko Yumoto, Susan Zabierowski, Peter G Zhang, Christine A Wells, Kim M Summers, Hideya Kawaji, Albin Sandelin, Michael Rehli, Yoshihide Hayashizaki, Piero Carninci, Alistair RR Forrest, Michiel JL de Hoon, FANTOM Consortium. An integrated expression atlas of miRNAs and their promoters in human and mouse. // Nature Biotechnology. 2017, v. 35, № 9, p. 872-878.
Mitchell J. Machiela, Jonathan N. Hofmann, Robert Carreras-Torres, Kevin M. Brown, Mattias Johansson, Zhaoming Wang, Matthieu Foll, Peng Li, Nathaniel Rothman, Sharon A. Savage, Valerie Gaborieau, James D. McKay, Yuanqing Ye, Marc Henrion, Fiona Bruinsma, Susan Jordan, Gianluca Severi, Kristian Hveem, Lars J. Vatten, Tony Fletcher, Kvetoslava Koppova, Susanna C. Larsson, Alicja Wolk, Rosamonde E. Banks, Peter J. Selby, Douglas F. Easton, Paul Pharoah, Gabriella Andreotti, Laura E. Beane Freeman, Stella Koutros, Demetrius Albanes, Satu Mannisto, Stephanie Weinstein, Peter E. Clark, Todd E. Edwards, Loren Lipworth, Susan M. Gapstur, Victoria L. Stevens, Hallie Carol, Matthew L. Freedman, Mark M. Pomerantz, Eunyoung Cho, Peter Kraft, Mark A. Preston, Kathryn M. Wilson, J. Michael Gaziano, Howard S. Sesso, Amanda Black, Neal D. Freedman, Wen-Yi Huang, John G. Anema, Richard J. Kahnoski, Brian R. Lane, Sabrina L. Noyes, David Petillo, Leandro M. Colli, Joshua N. Sampson, Celine Besse, Helene Blanche, Anne Boland, Laurie Burdette, Egor Prokhortchouk, Konstantin G. Skryabin, Meredith Yeager, Mirjana Mijuskovic, Miodrag Ognjanovic, Lenka Foretova, Ivana Holcatova, Vladimir Janout, Dana Mates, Anush Mukeriya, Stefan Rascu, David Zaridze, Vladimir Bencko, Cezary Cybulski, Eleonora Fabianova, Viorel Jinga, Jolanta Lissowska, Jan Lubinski, Marie Navratilova, Peter Rudnai, Neonila Szeszenia-Dabrowska, Simone Benhamou, Geraldine Cancel-Tassin, Olivier Cussenot, H. Bas Bueno-de-Mesquita, Federico Canzian, Eric J. Duell, Bo¨rje Ljungberg, Raviprakash T. Sitaram, lrike Peters, Emily White, Garnet L. Anderson, Lisa Johnson, Juhua Luo, Julie Buring, I-Min Lee, Wong-Ho Chow, Lee E. Moore, Christopher Wood, imothy Eisen, James Larkin, Toni K. Choueiri, G. Mark Lathrop, Bin Tean Teh, ean-Francois Deleuze, Xifeng Wu, Richard S. Houlston, Paul Brennan, Stephen J. Chanock, Ghislaine Scelo, Mark P. Purdue. Genetic Variants Related to Longer Telomere Length are Associated with Increased Risk of Renal Cell Carcinoma. // European Urology. 2017, v. 72, № 5, p. 747-754.
Artemov A.V., Mugue N.S., Rastorguev S.M., Zhenilo S., Mazur A.M., Tsygankova S.V., Boulygina E.S., Kaplun D., Nedoluzhko A.V., Medvedeva Y.A., Prokhortchouk E.B. Genome-Wide DNA Methylation Profiling Reveals Epigenetic Adaptation of Stickleback to Marine and Freshwater Conditions. // Molecular Biology and Evolution. 2017, v. 9, № 34, p. 2203-2213.
Golyshina OV, Toshchakov SV, Makarova KS, Gavrilov SN, Korzhenkov AA, La Cono V, Arcadi E, Nechitaylo TY, Ferrer M, Kublanov IV, Wolf YI, Yakimov MM, Golyshin PN. ‘ARMAN’ archaea depend on association with euryarchaeal host in culture and in situ. // Nature Communications. 2017, v. 8, № 1, № article 60, p. 1-12.
Ghislaine Scelo, Mark P. Purdue, Kevin M. Brown, Mattias Johansson, Zhaoming Wang, Jeanette E. Eckel-Passow, Yuanqing Ye, Jonathan N. Hofmann, Jiyeon Choi, Matthieu Foll, Valerie Gaborieau, Mitchell J. Machiela, Leandro M. Colli, Peng Li, Joshua N. Sampson, Behnoush Abedi-Ardekani, Celine Besse, Helene Blanche, Anne Boland, Laurie Burdette, Amelie Chabrier, Geoffroy Durand, Florence Le Calvez-Kelm, Egor Prokhortchouk, Nivonirina Robinot, Konstantin G. Skryabin, Magdalena B. Wozniak, Meredith Yeager, Gordana Basta-Jovanovic, Zoran Dzamic, Lenka Foretova, Ivana Holcatova, Vladimir Janout, Dana Mates, Anush Mukeriya, Stefan Rascu, David Zaridze, Vladimir Bencko, Cezary Cybulski, Eleonora Fabianova, Viorel Jinga, Jolanta Lissowska, Jan Lubinski, Marie Navratilova, Peter Rudnai, Neonila Szeszenia-Dabrowska, Simone Benhamou, Geraldine Cancel-Tassin, Olivier Cussenot, Laura Baglietto, Heiner Boeing, Kay-Tee Khaw, Elisabete Weiderpass, Borje Ljungberg, Raviprakash T. Sitaram, Fiona Bruinsma, Susan J. Jordan, Gianluca Severi, Ingrid Winship, Kristian Hveem, Lars J. Vatten, Tony Fletcher, Kvetoslava Koppova, Susanna C. Larsson, Alicja Wolk, Rosamonde E. Banks, Peter J. Selby, Douglas F. Easton, Paul Pharoah, Gabriella Andreotti, Laura E. Beane Freeman, Stella Koutros, Demetrius Albanes, Satu Ma¨nnisto, Stephanie Weinstein, Peter E. Clark, Todd L. Edwards, Loren Lipworth, Susan M. Gapstur, Victoria L. Stevens, Hallie Carol, Matthew L. Freedman, Mark M. Pomerantz, Eunyoung Cho, Peter Kraft, Mark A. Preston, Kathryn M. Wilson, J. Michael Gaziano, Howard D. Sesso, Amanda Black, Neal D. Freedman, Wen-Yi Huang, John G. Anema, Richard J. Kahnoski, Brian R. Lane, Sabrina L. Noyes, David Petillo, Bin Tean Teh, Ulrike Peters, Emily White, Garnet L. Anderson, Lisa Johnson, Juhua Luo, Julie Buring, I-Min Lee, Wong-Ho Chow, Lee E. Moore, Christopher Wood, Timothy Eisen, Marc Henrion, James Larkin, Poulami Barman, Bradley C. Leibovich, Toni K. Choueiri, G. Mark Lathrop, Nathaniel Rothman, Jean-Francois Deleuze, James D. McKay, Alexander S. Parker, Xifeng Wu, Richard S. Houlston, Paul Brennan, Stephen J. Chanock. Genome-wide association study identifies multiple risk loci for renal cell carcinoma. // Nature Communications. 2017, v. 8, № article 15 724.
Sorokin D, Messina E, Smedile F, Roman P, Sinninghe-Damste J, Golyshin P, Ciordia S, Mena M, Ferrer M, Kublanov I, Samarov N, Toshchakov S., La Cono V, Yakimov M. Discovery of anaerobic lithoheterotrophic haloarchaea, ubiquitous in hypersaline habitats. // The ISME Journal: Multidisciplinary journal of microbial ecology. 2017, v. 11, № 5, p. 1245-1260.
Lizio, Marina; Harshbarger, Jayson; Abugessaisa, Imad; Noguchi, Shuei; Kondo, Atsushi; Severin, Jessica; Mungall, Chris; Arenillas, David; Mathelier, Anthony; Medvedeva, Yulia A.; Lennartsson, Andreas; Drablos, Finn; Ramilowski, Jordan A.; Rackham, Owen; Gough, Julian; Andersson, Robin; Sandelin, Albin; Ienasescu, Hans; Ono, Hiromasa; Bono, Hidemasa; Hayashizaki, Yoshihide; Carninci, Piero; Forrest, Alistair R. R.; Kasukawa, Takeya; Kawaji, Hideya . // Nucleic Acids Research. 2017, v. 45, № D1, p. D737-D743.
Smith L.J., Bochkareva A., Rolfe M.D., Hunt D.M., Kahramanoglou C., Braun Y., Rodgers A., Blockley A., Coade S., Lougheed K.E.A., Hafneh N.A., Glenn S.M., Crack J.C., LeBrun N.E., Saldanha J.W., Makarov V., Nobeli I., Arnvig K., Mukamolova G.V., Buxton R.S., Green J. Cmr is a redox-responsive regulator of DosR that contributes to M. tuberculosis virulence. // Nucleic Acids Research. 2017, v. 45, № 11, p. 6600-6612.
Sorokin D.Y., Makarova K.S, Abbas B., Ferrer M., Golyshin P.N., Galinski E.A., Ciordia S., Mena M.C., Merkel A.Y., Wolf Y.I., van Loosdrecht M.C.M., Koonin E.V. Discovery of extremely halophilic, methyl-reducing euryarchaea provides insights into the evolutionary origin of methanogenesis. // Nature Microbiology. 2017, v. 2, № 8, № article 17081.
Taylor, Nicholas M. I., Prokhorov, Nikolai S., Guerrero-Ferreira, Ricardo C., Shneider, Mikhail M., Browning, Christopher, Goldie, Kenneth N., Stahlberg, Henning, Leiman, Petr G. Structure of the T4 baseplate and its function in triggering sheath contraction. NATURE, 2016, v. 533, n. 7603, pp. 346-352.
Daelman, Matthijs R. J., Sorokin, Dimitry, Kruse, Olaf, van Loosdrecht, Mark C. M., Strous, Marc Haloalkaline Bioconversions for Methane Production from Microalgae Grown on Sunlight. Trends in Biotechnology, 2016, v. 34, n. 6, pp. 450-457.
Thiaville, Jennifer J., Kellner, Stefanie M., Yuan, Yifeng, Hutinet, Geoffrey, Thiaville, Patrick C., Jumpathong, Watthanachai, Mohapatra, Susovan, Brochier-Armanet, Celine, Letarov, Andrey V., Hillebrand, Roman, Malik, Chanchal K., Rizzo, Carmelo J., Dedon, Peter C., de Crecy-Lagard, Valerie Novel genomic island modifies DNA with 7-deazaguanine derivatives. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2016, v. 113, n. 11, pp. E1452-E1459.
Danilova, Olga V., Suzina, Natalia E., Van De Kamp, Jodie, Svenning, Mette M., Bodrossy, Levente, Dedysh, Svetlana N. A new cell morphotype among methane oxidizers: a spiral-shaped obligately microaerophilic methanotroph from northern low-oxygen environments. ISME JOURNAL, 2016, v. 10, n. 11, pp. 2734-2743.
Sorokin, Dimitry Y., Kublanov, Ilya V., Gavrilov, Sergei N., Rojo, David, Roman, Pawel, Golyshin, Peter N., Slepak, Vladlen Z., Smedile, Francesco, Ferrer, Manuel, Messina, Enzo, La Cono, Violetta, Yakimov, Michail M. Elemental sulfur and acetate can support life of a novel strictly anaerobic haloarchaeon. ISME JOURNAL, 2016, v. 10, n. 1, pp. 240-252.
Kulakovskiy, Ivan V., Vorontsov, Ilya E., Yevshin, Ivan S., Soboleva, Anastasiia V., Kasianov, Artem S., Ashoor, Haitham, Ba-alawi, Wail, Bajic, Vladimir B., Medvedeva, Yulia A., Kolpakov, Fedor A., Makeev, Vsevolod J. HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models. NUCLEIC ACIDS RESEARCH, 2016, v. 44, n. D1, pp. D116-D125.
Urusov, Alexandr E., Petrakova, Alina V., Zherdev, Anatoly V., Dzantiev, Boris B. Multistage in one touch design with a universal labelling conjugate for high-sensitive lateral flow immunoassays. BIOSENSORS & BIOELECTRONICS, 2016, v. 86, pp. 575-579.

References: v. 
 v. 
 v. 
 v. 
 v. 
 v. 
 v. 
 v. 
 v. 
 v. 
 v. 
 v. 
 v. 
 v. 
 v. 
 v. 
 v. 
 v. 
 v. 
 v. 
 v. 
 v. 
 v. 
 v. 
 v. 
 v.