Source: http://c-hpp.org/04_documents/documents.php
Timestamp: 2019-04-19 20:43:00+00:00

Document:
Paik, Y. K. et al. (2017) Progress and Future Direction of Chromosome-Centric Human Proteome Project. J. Proteome Res., 16, 4253-4258.
Meyfour, A. et al. (2017) Chromosome-Centric Human Proteome Project Allies with Developmental Biology: A Case Study of the Role of Y Chromosome Genes in Organ Development. J. Proteome Res., 16, 4259-4272.
Tholey, A. et al. (2017) We Are Not Alone: The iMOP Initiative and Its Roles in a Biology- and Disease-Driven Human Proteome Project. J. Proteome Res., 16, 4273-4280.
Omenn, G. S. et al. (2017) Progress on the HUPO Draft Human Proteome: 2017 Metrics of the Human Proteome Project. J. Proteome Res., 16, 4281-4287.
Deutsch, E. W. et al. (2017) Proteomics Standards Initiative: Fifteen Years of Progress and Future Work. J. Proteome Res., 16, 4288-4298.
Schwenk, J. M. et al. (2017) The Human Plasma Proteome Draft of 2017: Building on the Human Plasma PeptideAtlas from Mass Spectrometry and Complementary Assays. J. Proteome Res., 16, 4299-4310.
Poverennaya, E. V. et al. (2017) Why Are the Correlations between mRNA and Protein Levels so Low among the 275 Predicted Protein-Coding Genes on Human Chromosome 18? J. Proteome Res., 16, 4311-4318.
Alberio, T. et al. (2017) Toward the Standardization of Mitochondrial Proteomics: The Italian Mitochondrial Human Proteome Project Initiative. J. Proteome Res., 16, 4319-4329.
Li, S. et al. (2017) Digging More Missing Proteins Using an Enrichment Approach with ProteoMiner. J. Proteome Res., 16, 4330-4339.
Carapito, C. et al. (2017) Validating Missing Proteins in Human Sperm Cells by Targeted Mass-Spectrometry- and Antibody-based Methods. J. Proteome Res., 16, 4340-4351.
Wang, Y. et al. (2017) Multi-Protease Strategy Identifies Three PE2 Missing Proteins in Human Testis Tissue. J. Proteome Res., 16, 4352-4363.
Peng, X. et al. (2017) Identification of Missing Proteins in the Phosphoproteome of Kidney Cancer. J. Proteome Res., 16, 4364-4373.
Guruceaga, E. et al. (2017) Enhanced Missing Proteins Detection in NCI60 Cell Lines Using an Integrative Search Engine Approach. J. Proteome Res., 16, 4374-4390.
Meyfour, A. et al. (2017) Y Chromosome Missing Protein, TBL1Y, May Play an Important Role in Cardiac Differentiation. J. Proteome Res., 16, 4391-4402.
Elguoshy, A. et al. (2017) Identification and Validation of Human Missing Proteins and Peptides in Public Proteome Databases: Data Mining Strategy. J. Proteome Res., 16, 4403-4414.
Choong, W. K. et al. (2017) Decoding the Effect of Isobaric Substitutions on Identifying Missing Proteins and Variant Peptides in Human Proteome. J. Proteome Res., 16, 4415-4424.
Hwang, H. et al. (2017) Next Generation Proteomic Pipeline for Chromosome-Based Proteomic Research Using NeXtProt and GENCODE Databases. J. Proteome Res., 16, 4425-4434.
Cho, J. Y. et al. (2017) Epsilon-Q: An Automated Analyzer Interface for Mass Spectral Library Search and Label-Free Protein Quantification. J. Proteome Res., 16, 4435-4445.
Zhao, P. et al. (2017) Protein-Level Integration Strategy of Multiengine MS Spectra Search Results for Higher Confidence and Sequence Coverage. J. Proteome Res., 16, 4446-4454.
Na, K. et al. (2017) Systematic Proteogenomic Approach To Exploring a Novel Function for NHERF1 in Human Reproductive Disorder: Lessons for Exploring Missing Proteins. J. Proteome Res., 16, 4455-4467.
Zhang, W. et al. (2017) Detergent-Insoluble Proteome Analysis Revealed Aberrantly Aggregated Proteins in Human Preeclampsia Placentas. J. Proteome Res., 16, 4468-4480.
Velásquez, E. et al. (2017) Synaptosomal Proteome of the Orbitofrontal Cortex from Schizophrenia Patients Using Quantitative Label-Free and iTRAQ-Based Shotgun Proteomics. J. Proteome Res., 16, 4481-4494.
Togayachi, A. et al. (2017) Glycobiomarker, Fucosylated Short-Form Secretogranin III Levels Are Increased in Serum of Patients with Small Cell Lung Carcinoma. J. Proteome Res., 16, 4495-4505.
Mora, M. I. et al. (2017) Prioritizing Popular Proteins in Liver Cancer: Remodelling One-Carbon Metabolism. J. Proteome Res., 16, 4506-4514.
Zhang, S. et al. (2017) Profiling B-Type Natriuretic Peptide Cleavage Peptidoforms in Human Plasma by Capillary Electrophoresis with Electrospray Ionization Mass Spectrometry. J. Proteome Res., 16, 4515-4522.
Zhou, J. Y. et al. (2017) Quality Assessments of Long-Term Quantitative Proteomic Analysis of Breast Cancer Xenograft Tissues. J. Proteome Res., 16, 4523-4530.
Mohamedali, A. et al. (2017) Human Prestin: A Candidate PE1 Protein Lacking Stringent Mass Spectrometric Evidence? J. Proteome Res., 16, 4531-4535.
Paik, Y. K. et al. (2016) Progress in the Chromosome-Centric Human Proteome Project as Highlighted in the Annual Special Issue IV. J. Proteome Res., 15, 3945-3950.
Omenn, G. S. et al. (2016) Metrics for the Human Proteome Project 2016: Progress on Identifying and Characterizing the Human Proteome, Including Post-Translational Modifications. J. Proteome Res., 15, 3951-3960.
Deutsch, E. W. et al. (2016) Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 2.1. J. Proteome Res., 15, 3961-3970.
Duek, P. et al. (2016) Missing Protein Landscape of Human Chromosomes 2 and 14: Progress and Current Status. J. Proteome Res., 15, 3971-3978.
Van Eyk, J. E. et al. (2016) Highlights of the Biology and Disease-driven Human Proteome Project, 2015-2016. J. Proteome Res., 15, 3979-3987.
Wei, W. et al. (2016) Deep Coverage Proteomics Identifies More Low-Abundance Missing Proteins in Human Testis Tissue with Q-Exactive HF Mass Spectrometer. J. Proteome Res., 15, 3988-3997.
Vandenbrouck, Y. et al. (2016) Looking for Missing Proteins in the Proteome of Human Spermatozoa: An Update. J. Proteome Res., 15, 3998-4019.
Zhao, M. et al. (2016) Searching Missing Proteins Based on the Optimization of Membrane Protein Enrichment and Digestion Process. J. Proteome Res., 15, 4020-4029.
Poverennaya, E. V. et al. (2016) State of the Art of Chromosome 18-Centric HPP in 2016: Transcriptome and Proteome Profiling of Liver Tissue and HepG2 Cells. J. Proteome Res., 15, 4030-4038.
Kopylov, A. T. et al. (2016) Targeted Quantitative Screening of Chromosome 18 Encoded Proteome in Plasma Samples of Astronaut Candidates. J. Proteome Res., 15, 4039-4046.
Guo, J. et al. (2016) Drug Resistance in Colorectal Cancer Cell Lines is Partially Associated with Aneuploidy Status in Light of Profiling Gene Expression. J. Proteome Res., 15, 4047-4059.
Guo, J. et al. (2016) Phosphoproteome Characterization of Human Colorectal Cancer SW620 Cell-Derived Exosomes and New Phosphosite Discovery for C-HPP. J. Proteome Res., 15, 4060-4072.
Weiland, F. et al. (2016) Novel IEF Peptide Fractionation Method Reveals a Detailed Profile of N-Terminal Acetylation in Chemotherapy-Responsive and -Resistant Ovarian Cancer Cells. J. Proteome Res., 15, 4073-4081.
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Garin-Muga, A. et al. (2016) Detection of Missing Proteins Using the PRIDE Database as a Source of Mass Spectrometry Evidence. J. Proteome Res., 15, 4101-4115.
Kim, J. W. et al. (2016) gFinder: A Web-Based Bioinformatics Tool for the Analysis of N-Glycopeptides. J. Proteome Res., 15, 4116-4125.
Lam, M. P. et al. (2016) Data-Driven Approach To Determine Popular Proteins for Targeted Proteomics Translation of Six Organ Systems. J. Proteome Res., 15, 4126-4134.
Paik, Y. K. et al. (2015) Recent Advances in the Chromosome-Centric Human Proteome Project: Missing Proteins in the Spot Light. J. Proteome Res., 14, 3409-3414.
Horvatovich, P. et al. (2015) Quest for Missing Proteins: Update 2015 on Chromosome-Centric Human Proteome Project. J. Proteome Res., 14, 3415-3431.
Jayaram, S. et al. (2015) Insights from Chromosome-Centric Mapping of Disease-Associated Genes: Chromosome 12 Perspective. J. Proteome Res., 14, 3432-3440.
Horvatovich, P. et al. (2015) In Vitro Transcription/Translation System: A Versatile Tool in the Search for Missing Proteins. J. Proteome Res., 14, 3441-3451.
Omenn, G. S. et al. (2015) Metrics for the Human Proteome Project 2015: Progress on the Human Proteome and Guidelines for High-Confidence Protein Identification. J. Proteome Res., 14, 3452-3460.
Deutsch, E. W. et al. (2015) State of the Human Proteome in 2014/2015 As Viewed through PeptideAtlas: Enhancing Accuracy and Coverage through the AtlasProphet. J. Proteome Res., 14, 3461-3473.
Vakilian, H. et al. (2015) DDX3Y, a Male-Specific Region of Y Chromosome Gene, May Modulate Neuronal Differentiation. J. Proteome Res., 14, 3474-3483.
Li, H. D. et al. (2015) Functional Networks of Highest-Connected Splice Isoforms: From The Chromosome 17 Human Proteome Project. J. Proteome Res., 14, 3484-3491.
Jangravi, Z. et al. (2015) Two Splice Variants of Y Chromosome-Located Lysine-Specific Demethylase 5D Have Distinct Function in Prostate Cancer Cell Line (DU-145). J. Proteome Res., 14, 3492-3502.
Rengaraj, D. et al. (2015) Bioinformatics Annotation of Human Y Chromosome-Encoded Protein Pathways and Interactions. J. Proteome Res., 14, 3503-3518.
Menon, R. et al. (2015) Computational Inferences of the Functions of Alternative/Noncanonical Splice Isoforms Specific to HER2+/ER-/PR- Breast Cancers, a Chromosome 17 C-HPP Study. J. Proteome Res., 14, 3519-3529.
Díez, P. et al. (2015) Integration of Proteomics and Transcriptomics Data Sets for the Analysis of a Lymphoma B-Cell Line in the Context of the Chromosome-Centric Human Proteome Project. J. Proteome Res., 14, 3530-3540.
Tay, A. P. et al. (2015) Proteomic Validation of Transcript Isoforms, Including Those Assembled from RNA-Seq Data. J. Proteome Res., 14, 3541-3554.
Woo, S. et al. (2015) Advanced Proteogenomic Analysis Reveals Multiple Peptide Mutations and Complex Immunoglobulin Peptides in Colon Cancer. J. Proteome Res., 14, 3555-3567.
Eckhard, U. et al. (2015) The Human Dental Pulp Proteome and N-Terminome: Levering the Unexplored Potential of Semitryptic Peptides Enriched by TAILS to Identify Missing Proteins in the Human Proteome Project in Underexplored Tissues. J. Proteome Res., 14, 3568-3582.
Zhang, Y. et al. (2015) Tissue-Based Proteogenomics Reveals that Human Testis Endows Plentiful Missing Proteins. J. Proteome Res., 14, 3583-3594.
Ahmadi Rastegar, D. et al. (2015) Isoform-Level Gene Expression Profiles of Human Y Chromosome Azoospermia Factor Genes and Their X Chromosome Paralogs in the Testicular Tissue of Non-Obstructive Azoospermia Patients. J. Proteome Res., 14, 3595-3605.
Jumeau, F. et al. (2015) Human Spermatozoa as a Model for Detecting Missing Proteins in the Context of the Chromosome-Centric Human Proteome Project. J. Proteome Res., 14, 3606-3620.
Carapito, C. et al. (2015) Computational and Mass-Spectrometry-Based Workflow for the Discovery and Validation of Missing Human Proteins: Application to Chromosomes 2 and 14. J. Proteome Res., 14, 3621-3634.
Fan, Y. et al. (2015) Insights from ENCODE on Missing Proteins: Why β-Defensin Expression Is Scarcely Detected. J. Proteome Res., 14, 3635-3644.
Yang, L. et al. (2015) Finding Missing Proteins from the Epigenetically Manipulated Human Cell with Stringent Quality Criteria. J. Proteome Res., 14, 3645-3657.
Kitata, R. B. et al. (2015) Mining Missing Membrane Proteins by High-pH Reverse-Phase StageTip Fractionation and Multiple Reaction Monitoring Mass Spectrometry. J. Proteome Res., 14, 3658-3669.
Hoover, H. et al. (2015) Quantitative Proteomic Verification of Membrane Proteins as Potential Therapeutic Targets Located in the 11q13 Amplicon in Cancers. J. Proteome Res., 14, 3670-3679.
Su, N. et al. (2015) Special Enrichment Strategies Greatly Increase the Efficiency of Missing Proteins Identification from Regular Proteome Samples. J. Proteome Res., 14, 3680-3692.
Chen, Y. et al. (2015) Identification of Missing Proteins Defined by Chromosome-Centric Proteome Project in the Cytoplasmic Detergent-Insoluble Proteins. J. Proteome Res., 14, 3693-3709.
Jeong, S. K. et al. (2015) GenomewidePDB 2.0: A Newly Upgraded Versatile Proteogenomic Database for the Chromosome-Centric Human Proteome Project. J. Proteome Res., 14, 3710-3719.
Yang, S. et al. (2015) CAPER 3.0: A Scalable Cloud-Based System for Data-Intensive Analysis of Chromosome-Centric Human Proteome Project Data Sets. J. Proteome Res., 14, 3720-3728.
Krasnov, G. S. et al. (2015) PPLine: An Automated Pipeline for SNP, SAP, and Splice Variant Detection in the Context of Proteogenomics. J. Proteome Res., 14, 3729-3737.
Tabas-Madrid, D. et al. (2015) Proteogenomics Dashboard for the Human Proteome Project. J. Proteome Res., 14, 3738-3749.
Dong, Q. et al. (2015) Structural Bioinformatics Inspection of neXtProt PE5 Proteins in the Human Proteome. J. Proteome Res., 14, 3750-3761.
Panwar, B. et al. (2015) MI-PVT: A Tool for Visualizing the Chromosome-Centric Human Proteome. J. Proteome Res., 14, 3762-3767.
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