Source: http://www.fbb.msu.ru/doc/index.php?ID=200
Timestamp: 2019-04-18 23:06:00+00:00

Document:
van, B. o. h. e. e. m. e. n.; de, G. r. a. a. f.; Lauber, C.; Bestebroer, T. M.; Raj, V. S.; Zaki, A. M.; Osterhaus, A. D.; Haagmans, B. L.; Gorbalenya, A. E.; Snijder, E. J.; Fouchier, R. A.
MBio. 2012 Nov 20;3(6). pii: e00473-12. doi: 10.1128/mBio.00473-12.
Cryptic diversity of the 'cosmopolitan' harpacticoid copepod Nannopus palustris: genetic and morphological evidence.
Garlitska, L.; Neretina, T.; Schepetov, D.; Mugue, N.; De, T. r. o. c. h.; Baguley, J. G.; Azovsky, A.
Mol Ecol. 2012 Nov;21(21):5336-47. doi: 10.1111/mec.12016. Epub 2012 Sep 18.
Solitary restriction endonucleases in prokaryotic genomes.
Ershova, A. S.; Karyagina, A. S.; Vasiliev, M. O.; Lyashchuk, A. M.; Lunin, V. G.; Spirin, S. A.; Alexeevski, A. V.
Human-specific histone methylation signatures at transcription start sites in prefrontal neurons.
Shulha, H. P.; Crisci, J. L.; Reshetov, D.; Tushir, J. S.; Cheung, I.; Bharadwaj, R.; Chou, H. J.; Houston, I. B.; Peter, C. J.; Mitchell, A. C.; Yao, W. D.; Myers, R. H.; Chen, J. F.; Preuss, T. M.; Rogaev, E. I.; Jensen, J. D.; Weng, Z.; Akbarian, S.
Bioinformatic analysis of alpha/beta-hydrolase fold enzymes reveals subfamily-specific positions responsible for discrimination of amidase and lipase activities.
Suplatov, D. A.; Besenmatter, W.; Svedas, V. K.; Svendsen, A.
Sperm-specific glyceraldehyde-3-phosphate dehydrogenase is expressed in melanoma cells.
Sevostyanova, I. A.; Kulikova, K. V.; Kuravsky, M. L.; Schmalhausen, E. V.; Muronetz, V. I.
Busch, K. B.; Deckers-Hebestreit, G.; Hanke, G. T.; Mulkidjanian, A. Y.
Fitness conferred by replaced amino acids declines with time.
Naumenko, S. A.; Kondrashov, A. S.; Bazykin, G. A.
Biol Lett. 2012 Oct 23;8(5):825-8. doi: 10.1098/rsbl.2012.0356. Epub 2012 May 23.
Trendeleva, T. A.; Sukhanova, E. I.; Rogov, A. G.; Zvyagilskaya, R. A.; Seveina, I. I.; Ilyasova, T. M.; Cherepanov, D. A.; Skulachev, V. P.
Evolution of transcriptional regulation in closely related bacteria.
Tsoy, O. V.; Pyatnitskiy, M. A.; Kazanov, M. D.; Gelfand, M. S.
BMC Evol Biol. 2012 Oct 6;12:200. doi: 10.1186/1471-2148-12-200.
N-homocysteinylation of ovine prion protein induces amyloid-like transformation.
Stroylova, Y. Y.; Chobert, J. M.; Muronetz, V. I.; Jakubowski, H.; Haertle, T.
Arch Biochem Biophys. 2012 Oct 1;526(1):29-37. doi: 10.1016/j.abb.2012.06.008.
Open questions on the origin of life at anoxic geothermal fields.
Mulkidjanian, A. Y.; Bychkov, A. Y.; Dibrova, D. V.; Galperin, M. Y.; Koonin, E. V.
Orig Life Evol Biosph. 2012 Oct;42(5):507-16. doi: 10.1007/s11084-012-9315-0.
The role of energy in the emergence of biology from chemistry.
Dibrova, D. V.; Chudetsky, M. Y.; Galperin, M. Y.; Koonin, E. V.; Mulkidjanian, A. Y.
Orig Life Evol Biosph. 2012 Oct;42(5):459-68. doi: 10.1007/s11084-012-9308-z.
Pustovidko, A. V.; Rokitskaya, T. I.; Severina, I. I.; Simonyan, R. A.; Trendeleva, T. A.; Lyamzaev, K. G.; Antonenko, Y. N.; Rogov, A. G.; Zvyagilskaya, R. A.; Skulachev, V. P.; Chernyak, B. V.
Major role of positive selection in the evolution of conservative segments of Drosophila proteins.
Bazykin, G. A.; Kondrashov, A. S.
Mild uncoupling of respiration and phosphorylation as a mechanism providing nephro- and neuroprotective effects of penetrating cations of the SkQ family.
Plotnikov, E. Y.; Silachev, D. N.; Jankauskas, S. S.; Rokitskaya, T. I.; Chupyrkina, A. A.; Pevzner, I. B.; Zorova, L. D.; Isaev, N. K.; Antonenko, Y. N.; Skulachev, V. P.; Zorov, D. B.
Biochemistry (Mosc). 2012 Sep;77(9):1029-37. doi: 10.1134/S0006297912090106.
Genetics-based classification of filoviruses calls for expanded sampling of genomic sequences.
Lauber, C.; Gorbalenya, A. E.
Viruses. 2012 Sep;4(9):1425-37. doi: 10.3390/v4091425. Epub 2012 Aug 31.
Insertions and deletions trigger adaptive walks in Drosophila proteins.
Leushkin, E. V.; Bazykin, G. A.; Kondrashov, A. S.
Heterogeneity of the transition/transversion ratio in Drosophila and Hominidae genomes.
Seplyarskiy, V. B.; Kharchenko, P.; Kondrashov, A. S.; Bazykin, G. A.
Isolation of antibodies against different protein conformations using immunoaffinity chromatography.
Kuravsky, M. L.; Schmalhausen, E. V.; Pozdnyakova, N. V.; Muronetz, V. I.
The phenoptosis problem: what is causing the death of an organism? Lessons from acute kidney injury.
Zorov, D. B.; Plotnikov, E. Y.; Jankauskas, S. S.; Isaev, N. K.; Silachev, D. N.; Zorova, L. D.; Pevzner, I. B.; Pulkova, N. V.; Zorov, S. D.; Morosanova, M. A.
Biochemistry (Mosc). 2012 Jul;77(7):742-53. doi: 10.1134/S0006297912070073.
What is "phenoptosis" and how to fight it?
Biochemistry (Mosc). 2012 Jul;77(7):689-706. doi: 10.1134/S0006297912070012.
CORECLUST: identification of the conserved CRM grammar together with prediction of gene regulation.
Nikulova, A. A.; Favorov, A. V.; Sutormin, R. A.; Makeev, V. J.; Mironov, A. A.
Mitochondria-targeted antioxidant SkQR1 ameliorates gentamycin-induced renal failure and hearing loss.
Jankauskas, S. S.; Plotnikov, E. Y.; Morosanova, M. A.; Pevzner, I. B.; Zorova, L. D.; Skulachev, V. P.; Zorov, D. B.
Biochemistry (Mosc). 2012 Jun;77(6):666-70. doi: 10.1134/S0006297912060144.
Regulation and evolution of malonate and propionate catabolism in proteobacteria.
Suvorova, I. A.; Ravcheev, D. A.; Gelfand, M. S.
Signatures of the ATP-binding pocket as a basis for structural classification of the serine/threonine protein kinases of gram-positive bacteria.
Zakharevich, N. V.; Osolodkin, D. I.; Artamonova, I. I.; Palyulin, V. A.; Zefirov, N. S.; Danilenko, V. N.
Proteins. 2012 May;80(5):1363-76. doi: 10.1002/prot.24032. Epub 2012 Feb 13.
Biases in read coverage demonstrated by interlaboratory and interplatform comparison of 117 mRNA and genome sequencing experiments.
Khrameeva, E. E.; Gelfand, M. S.
BMC Bioinformatics. 2012 Apr 19;13 Suppl 6:S4. doi: 10.1186/1471-2105-13-S6-S4.
Origin of first cells at terrestrial, anoxic geothermal fields.
Construction of a Full-Atomic Mechanistic Model of Human Apurinic/Apyrimidinic Endonuclease APE1 for Virtual Screening of Novel Inhibitors.
Khaliullin, I. G.; Nilov, D. K.; Shapovalova, I. V.; Svedas, V. K.
Molecular phylogenetics of Hydatellaceae (Nymphaeales): sexual-system homoplasy and a new sectional classification.
Iles, W. J.; Rudall, P. J.; Sokoloff, D. D.; Remizowa, M. V.; Macfarlane, T. D.; Logacheva, M. D.; Graham, S. W.
Am J Bot. 2012 Apr;99(4):663-76. doi: 10.3732/ajb.1100524. Epub 2012 Apr 2.
Toward genetics-based virus taxonomy: comparative analysis of a genetics-based classification and the taxonomy of picornaviruses.
J Virol. 2012 Apr;86(7):3905-15. doi: 10.1128/JVI.07174-11. Epub 2012 Jan 25.
J Virol. 2012 Apr;86(7):3890-904. doi: 10.1128/JVI.07173-11. Epub 2012 Jan 25.
Computer modeling of transketolase-like protein, TKTL1, a marker of certain tumor tissues.
Maslova, A. O.; Meshalkina, L. E.; Kochetov, G. A.
Biochemistry (Mosc). 2012 Mar;77(3):296-9. doi: 10.1134/S000629791203008X.
Temporal regulation of gene expression of the Escherichia coli bacteriophage phiEco32.
Pavlova, O.; Lavysh, D.; Klimuk, E.; Djordjevic, M.; Ravcheev, D. A.; Gelfand, M. S.; Severinov, K.; Akulenko, N.
Rate and breadth of protein evolution are only weakly correlated.
Naumenko, S. A.; Kondrashov, A. S.
Biol Direct. 2012 Feb 15;7:8. doi: 10.1186/1745-6150-7-8.
Chursov, A.; Walter, M. C.; Schmidt, T.; Mironov, A.; Shneider, A.; Frishman, D.
Stimulation of kainate toxicity by zinc in cultured cerebellar granule neurons and the role of mitochondria in this process.
Lozier, E. R.; Stelmashook, E. V.; Uzbekov, R. E.; Novikova, S. V.; Zorov, S. D.; Alieva, I. B.; Arbeille, B.; Zorov, D. B.; Isaev, N. K.
Structural study of thrombin binding DNA aptamers by the circular dichroism.
Yuminova, A. V.; Spiridonova, V. A.; Arutyunyan, A. M.; Kopylov, A. M.
Mitochondria-targeted antioxidants as promising drugs for treatment of age-related brain diseases.
J Alzheimers Dis. 2012;28(2):283-9. doi: 10.3233/JAD-2011-111391.
Molecular modeling of formate dehydrogenase: the formation of the Michaelis complex.
Nilov, D. K.; Shabalin, I. G.; Popov, V. O.; Svedas, V. K.
J Biomol Struct Dyn. 2012;30(2):170-9. doi: 10.1080/07391102.2012.677768.
The Mitochondria-Targeted Antioxidants and Remote Kidney Preconditioning Ameliorate Brain Damage through Kidney-to-Brain Cross-Talk.
Silachev, D. N.; Isaev, N. K.; Pevzner, I. B.; Zorova, L. D.; Stelmashook, E. V.; Novikova, S. V.; Plotnikov, E. Y.; Skulachev, V. P.; Zorov, D. B.
PLoS One. 2012;7(12):e51553. doi: 10.1371/journal.pone.0051553. Epub 2012 Dec 14.
Comparative genomics of CytR, an unusual member of the LacI family of transcription factors.
PLoS One. 2012;7(9):e44194. doi: 10.1371/journal.pone.0044194. Epub 2012 Sep 24.
Glutamine versus ammonia utilization in the NAD synthetase family.
De, I. n. g. e. n. i. i. s.; Kazanov, M. D.; Shatalin, K.; Gelfand, M. S.; Osterman, A. L.; Sorci, L.
PLoS One. 2012;7(6):e39115. doi: 10.1371/journal.pone.0039115. Epub 2012 Jun 15.
Comparative analysis of gene expression level by quantitative real-time PCR has limited application in objects with different morphology.
Demidenko, N. V.; Penin, A. A.
PLoS One. 2012;7(5):e38161. doi: 10.1371/journal.pone.0038161. Epub 2012 May 30.
Spatial proximity and similarity of the epigenetic state of genome domains.
Khrameeva, E. E.; Mironov, A. A.; Fedonin, G. G.; Khaitovich, P.; Gelfand, M. S.
PLoS One. 2012;7(4):e33947. doi: 10.1371/journal.pone.0033947. Epub 2012 Apr 4.
Evidence for widespread association of mammalian splicing and conserved long-range RNA structures.
Pervouchine, D. D.; Khrameeva, E. E.; Pichugina, M. Y.; Nikolaienko, O. V.; Gelfand, M. S.; Rubtsov, P. M.; Mironov, A. A.
RNA. 2012 Jan;18(1):1-15. doi: 10.1261/rna.029249.111. Epub 2011 Nov 29.

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