Source: https://bansal-lab.github.io/publications.html
Timestamp: 2019-04-22 02:46:57+00:00

Document:
Bansal V. Integrating read-based and population-based phasing for dense and accurate haplotyping of individual genomes. accepted at ISMB 2019 (to be published in Bioinformatics).
Bakhtiari M, Shleizer-Burko S, Gymrek M, Bansal V, Bafna V. Targeted Genotyping of Variable Number Tandem Repeats with adVNTR. Genome Research, October 2018.
Bansal V. An accurate algorithm for the detection of DNA fragments from dilution pool sequencing experiments. Bioinformatics 2017. Also presented at the RECOMB-Seq 2017 conference.
Tiwari S, Dang J, Qin Y, Lichinchi G, Bansal V, Rana TM. Zika virus infection reprograms global transcription of host cells to allow sustained infection. Emerging Microbes and Infection, April 2017.
Torkamani A, Pham P, Libiger O, Bansal V, Zhang G, Scott-Van Zeeland AA, Tewhey R, Topol EJ, Schork NJ. Clinical implications of human population differences in genome-wide rates of functional genotypes. Front Genet. 2012;3:211.
Tewhey R, Cannavino CR, Leake JA, Bansal V, Topol EJ, Torkamani A, Bradley JS, Schork NJ. Genetic structure of community acquired methicillin-resistant Staphylococcus aureus USA300. BMC Genomics. 2012 Sep 25;13:508.
Bansal V, Libiger O. A probabilistic method for the detection and genotyping of small indels from population-scale sequence data. Bioinformatics. 2011 Aug 1;27(15):2047-53. Epub 2011 Jun 7.
Bansal V, Libiger O, Torkamani A, Schork NJ. An application and empirical comparison of statistical analysis methods for associating rare variants to a complex phenotype. Pac Symp Biocomput. 2011:76-87.
Lo C, Bashir A, Bansal V, Bafna V. Strobe sequence design for haplotype assembly. BMC Bioinformatics. 2011 Feb 15;12 Suppl 1:S24.
Tewhey R, Bansal V, Torkamani A, Topol EJ, Schork NJ. The importance of phase information for human genomics. Nature Review Genetics 2011 Mar;12(3):215-23.
Bansal V, Tewhey R, Topol EJ, Schork NJ. The next phase in human genetics. Nature Biotechnology 2011 Jan;29(1):38-9.
Bansal V, Tewhey R, Leproust EM, Schork NJ. Efficient and cost effective population resequencing by pooling and in-solution hybridization. PLoS One. 2011 Mar 30;6(3):e18353.
Harismendy O, Bansal V, et al. Population sequencing of two endocannabinoid metabolic genes identifies rare and common regulatory variants associated with extreme obesity and metabolite level. Genome Biology 2010;11(11):R118.
Bhatia G, Bansal V, Harismendy O, Schork NJ, Topol EJ, Frazer K, Bafna V. A covering method for detecting genetic associations between rare variants andcommon phenotypes. PLoS Comput Biol. 2010 Oct 14;6(10):e1000954.
Bansal V, Bafna V. HapCUT: an efficient and accurate algorithm for the haplotype assembly problem. Bioinformatics. 2008 Aug 15;24(16):i153-9.
Bansal V, Halpern AL, Axelrod N, Bafna V. An MCMC algorithm for haplotype assembly from whole-genome sequence data. Genome Research 2008 Aug;18(8):1336-46.
Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC. The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.
Gusfield D, Bansal V, Bafna V, Song YS. A decomposition theory for phylogenetic networks and incompatible characters. J Comput Biol. 2007 Dec;14(10):1247-72.
Bansal V, Bashir A, Bafna V. Evidence for large inversion polymorphisms in the human genome from HapMap data. Genome Research 2007 Feb;17(2):219-30. Epub 2006 Dec 21.
Bafna V, Bansal V. Inference about recombination from haplotype data: lower bounds and recombination hotspots. J Comput Biol. 2006 Mar;13(2):501-21. PubMed PMID: 16597254.
Bafna V, Bansal V. The number of recombination events in a sample history: conflict graph and lower bounds. IEEE/ACM Trans Comput Biol Bioinform. 2004 Apr-Jun;1(2):78-90. PubMed PMID: 17048383.

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