Source: http://alpha.uhasselt.be/robert.brijder/
Timestamp: 2019-04-22 18:27:46+00:00

Document:
Postdoctoral fellow of the Research Foundation - Flanders (FWO) within the research group Database and Theoretical Computer Sciences at Hasselt University. Individual UHasselt page. Project page.
Dec. 2010 - Sep. 2013.
Postdoc ("doctor-assistent") in the research group Database and Theoretical Computer Sciences at Hasselt University.
Sept. 2008 - Nov. 2010.
Postdoc in the research group lead by Hendrik Blockeel at the Leiden Institute of Advanced Computer Science (LIACS) at Leiden University. Project Annotated Graph Mining funded by NWO.
Sept. 2004 - Aug. 2008.
PhD student and member of the research group Theoretical Computer Science, lead by G. Rozenberg, at LIACS. Received PhD from Leiden University in December 2008. PhD Thesis. Project VIEWS funded by NWO.
Finished Master's Thesis in Computer Science at Leiden University in March 2004.
Internship at Philips Medical Systems from Januari 2003 until June 2003 as part of the Science Based Business program.
Other (incomplete) sources: DBLP, UHasselt DB, ORCID, and Google Scholar.
21th International Conference on Database Theory, ICDT 2018 (B. Kimelfeld and Y. Amsterdamer, eds.), Leibniz International Proceedings in Informatics (LIPIcs), v. 98, 10:1-10:17, 2018. arXiv preprint 1709.08359.
The DNA query language DNAQL.
16th International Conference on Database Theory, ICDT 2013 (W.C. Tan, ed.), 1-9, 2013.
A Type System for DNAQL.
DNA Computing and Molecular Programming - 18th International Conference, DNA 18 (D. Stefanovic and A. Turberfield, eds.), Lecture Notes in Computer Science, v. 7433, 12-24, 2012.
Computing with Chemical Reaction Networks: A Tutorial.
Natural Computing, v. 18, 119-137, 2019. arXiv preprint 1811.10361.
Democratic, Existential, and Consensus-Based Output Conventions in Stable Computation by Chemical Reaction Networks.
Natural Computing, v. 17, 97-108, 2018. arXiv preprint 1604.03687.
Conditions for Extinction Events in Chemical Reaction Networks with Discrete State Spaces.
Journal of Mathematical Biology, v. 76, 1535-1558, 2018. arXiv preprint 1701.02012.
Sorting by Reversals and the Theory of 4-Regular Graphs.
Theoretical Computer Science, v. 701, 40-53, 2017. arXiv preprint 1701.07463.
Dominance and Deficiency for Petri Nets and Chemical Reaction Networks.
Natural Computing, v. 16, 285-294, 2017. arXiv preprint 1503.04005.
Robustness of Expressivity in Chemical Reaction Networks.
DNA Computing and Molecular Programming - 22th International Conference, DNA 22 (Y. Rondelez and D. Woods, eds.), Lecture Notes in Computer Science, v. 9818, 52-66, 2016.
Minimal Output Unstable Configurations in Chemical Reaction Networks and Deciders.
Natural Computing, v. 15, 235-244, 2016. arXiv preprint 1404.3166.
Dominance and T-invariants for Petri Nets and Chemical Reaction Networks.
DNA Computing and Molecular Programming - 21th International Conference, DNA 21 (A. Philips and P. Yin, eds.), Lecture Notes in Computer Science, v. 9211, 1-15, 2015. Local copy.
Output Stability and Semilinear Sets in Chemical Reaction Networks and Deciders.
DNA Computing and Molecular Programming - 20th International Conference, DNA 20 (S. Murata and S. Kobayashi, eds.), Lecture Notes in Computer Science, v. 8727, 100-113, 2014. Local copy.
Graph-Theoretic Formalization of Hybridization in DNA Sticker Complexes.
Natural Computing, v. 12, 223-234, 2013.
A comparison of graph-theoretic DNA hybridization models.
Theoretical Computer Science, v. 429, 46-53, 2012.
DNA Computing and Molecular Programming - 17th International Conference, DNA 17 (L. Cardelli and W.M. Shih, eds.), Lecture Notes in Computer Science, v. 6937, 49-63, 2011.
Natural Computing, v. 10, 17-38, 2011.
Theoretical Computer Science, v. 410, 1486-1494, 2009.
Proceedings of the Satellite Workshops of DLT 2007, Part 3: Workshop on Tilings and Self-Assembly (J. Kari, ed.), TUCS General Publication No 45, June 2007.
Fundamenta Informaticae, v. 75, 49-75, 2007.
Characterizing (0,±1)-matrices with only even-rank principal submatrices in terms of skew-symmetry.
Counterexamples to a conjecture of Las Vergnas.
A characterization of circle graphs in terms of multimatroid representations.
The Interlace Polynomial and the Tutte-Martin Polynomial.
Submitted for the CRC Handbook on the Tutte Polynomial edited by J. Ellis-Monaghan and I. Moffatt.
Quaternary Bicycle Matroids and the Penrose Polynomial for Delta-Matroids.
arXiv preprint 1210.7718. Contains the material of arXiv preprint 1302.4415.
Orienting Transversals and Transition Polynomials of Multimatroids.
Advances in Applied Mathematics, v. 94, 120-155, 2018. arXiv preprint 1605.04244.
Electronic Journal of Combinatorics, v. 24, P2.49, 2017. arXiv preprint 1602.03899.
Isotropic matroids II: Circle graphs.
Electronic Journal of Combinatorics, v. 23, P4.2, 2016. arXiv preprint 1504.04299.
Isotropic matroids I: Multimatroids and Neighborhoods.
Electronic Journal of Combinatorics, v. 23, P4.1, 2016. arXiv preprint 1503.04406.
European Journal of Combinatorics, v. 40, 142-167, 2014. arXiv preprint 1010.4678. Erratum.
The Nullity Theorem for Principal Pivot Transform.
Linear Algebra and its Applications, v. 439, 3638-3642, 2013. arXiv preprint 1307.4272.
Electronic Journal of Combinatorics, v. 20, P27, 2013. arXiv preprint 1107.5493.
SIAM Journal on Discrete Mathematics, v. 27, 492-506, 2013. arXiv preprint 1010.4497.
Fundamenta Informaticae, v. 116, 15-23, 2012.
Theoretical Computer Science, v. 454, 64-71, 2012. arXiv preprint 0811.3500.
European Journal of Combinatorics, v. 32, 1353-1367, 2011. arXiv preprint 0909.4004.
Linear Algebra and its Applications, v. 435, 277-288, 2011. arXiv preprint 0912.0878.
7th Annual Conference on Theory and Applications of Models of Computation, TAMC 2010 (J. Kratochvil and A. Li, eds.), Lecture Notes in Computer Science, v. 6108, 151-162, 2010.
Discrete Applied Mathematics, v. 158, 1977-1985, 2010. arXiv preprint 0909.3789.
On the Inference of Non-Confluent NLC Graph Grammars.
Journal of Logic and Computation, v. 23, 799-814, 2013. arXiv preprint 0901.4876 (older version with different title).
Characterizing Compressibility of Disjoint Subgraphs with NLC Grammars.
Language and Automata Theory and Applications, 5th International Conference, LATA 2011 (A.-H. Dediu, S. Inenaga, C. Martín-Vide, eds.), Lecture Notes in Computer Science, v. 6638, 167-178, 2011.
Learning Non-Confluent NLC Graph Grammar Rules.
5th Conference on Computability in Europe (CiE 2009), Mathematical Theory and Computational Practice (K. Ambos-Spies, B. Lowe, W. Merkle, eds.), Abstract Booklet, 60-69, 2009.
In: Computation, Physics, and Beyond. Lecture Notes in Computer Science, v. 7160, 330-342, 2012.
International Journal of Foundations of Computer Science, v. 22, 1499-1517, 2011.
In: Computation, Cooperation, and Life. Lecture Notes in Computer Science, v. 6610, 191-202, 2011.
Electronic Communications of the EASST, v. 30, 2010.
The papers in the section Combinatorics above are also highly relevant for (the formal study of) Gene Assembly in Ciliates.
Graphs Associated with DNA Rearrangements and Their Polynomials.
Algebraic and Combinatorial Computational Biology (R. Robeva, M. Macauley, eds.), 61-87, Academic Press, 2019.
Recombination faults in gene assembly in ciliates modeled using multimatroids.
Theoretical Computer Science, v. 608, 27-35, 2015. Local copy.
10th Conference on Computability in Europe (CiE 2014), Lecture Notes in Computer Science, v. 8493, 63-72, 2014. Local copy.
The Algebra of Gene Assembly in Ciliates.
Discrete and Topological Models in Molecular Biology (N. Jonoska, M. Saito, eds.), Natural Computing Series, 289-307, Springer, 2014. Local copy.
Computational Nature of Gene Assembly in Ciliates.
Handbook of Natural Computing (G. Rozenberg, T.H.W. Bäck, J.N. Kok, eds.), 1233-1280, Springer, 2012.
Theoretical Computer Science, v. 411, 897-905, 2010.
Extended Strings and Graphs for Simple Gene Assembly.
Theoretical Computer Science, v. 411, 730-738, 2010.
Algorithmic Bioprocesses (A. Condon, D. Harel, J.N. Kok, A. Salomaa, E. Winfree, eds.), Natural Computing Series, Springer, 99-115, 2009.
International Journal of Foundations of Computer Science, v. 20, 271-291, 2009. arXiv preprint cs.LO/0702171 (older version).
Language and Automata Theory and Applications, 2nd International Conference, LATA 2008 (C. Martín-Vide, F. Otto, H. Fernau, eds.), Lecture Notes in Computer Science, v. 5196, 137-148, 2008. arXiv preprint 0712.3380.
Acta Informatica, v. 45, 383-402, 2008. arXiv preprint cs.LO/0702041.
Discrete Applied Mathematics, v. 156, 1736-1753, 2008. arXiv preprint cs.LO/0601135 (older version).
Using Sorting by Reversal: Breakpoint Graph for Gene Assembly in Ciliates.
CompLife 2007 (M.R. Berthold et al., eds.), AIP Conference Proceedings, v. 940, 50-59, 2007.
A String-Based Model for Simple Gene Assembly.
16th International Symposium on Fundamentals of Computation Theory, FCT 2007 (E. Csuhaj-Varjú and Z. Ésik, eds.), Lecture Notes in Computer Science, v. 4639, 161-172, 2007.
16th International Symposium on Fundamentals of Computation Theory, FCT 2007 (E. Csuhaj-Varjú and Z. Ésik, eds.), Lecture Notes in Computer Science, v. 4639, 149-160, 2007.
11th International Conference on Developments in Language Theory, DLT 2007 (T. Harju, J. Karhumäki, A. Lepistö, eds.), Lecture Notes in Computer Science, v. 4588, 120-131, 2007.
CompLife 2006 (M.R. Berthold et al., eds.), Lecture Notes in Bioinformatics, v. 4216, 97-106, 2006.
Theoretical Computer Science, v. 356, 26-45, 2006. arXiv preprint cs.LO/0601122 (older version).
CompLife 2005 (M.R. Berthold et al., eds.), Lecture Notes in Bioinformatics, v. 3695, 128-139, 2005.
Membrane Systems with Proteins Embedded in Membranes.
Theoretical Computer Science, v. 404, 26-39, 2008.
Cycles and Communicating Classes in Membrane Systems and Molecular Dynamics.
Theoretical Computer Science, v. 372, 242-266, 2007.
Membrane Systems with Marked Membranes.
Workshop on Membrane Computing and Biologically Inspired Process Calculi (MeCBIC 2006). Electronic Notes in Theoretical Computer Science (ENTCS), v. 171, 25-36, 2007.
Membrane Systems with External Control.
Seventh Workshop on Membrane Computing (H.J. Hoogeboom et al., eds.), Lecture Notes in Computer Science, v. 4361, 215-232, 2006.
Communication Membrane Systems with Active Symports.
Journal of Automata, Languages and Combinatorics (JALC), v. 11, 241-261, 2006.
Reaction Cycles in Membrane Systems and Molecular Dynamics.
Proceedings of the Fourth Brainstorming Week on Membrane Computing (C. Graciani Diaz, G. Paun, A. Romero-Jimenez, F. Sancho-Caparrini, eds.), vol2, 185-208, 2006.
Complexity of Biocomputation: Symbolic Dynamics in Membrane Systems.
International Journal of Foundations of Computer Science, v. 17, 147-165, 2006.
First Steps towards a Geometry of Computation.
Proceedings of the Third Brainstorming Week on Membrane Computing (M.A. Gutiérrez-Naranjo, A. Riscos-Núñez, F.J. Romero-Campero, D. Sburlan, eds.), 197-218, 2005.
High angular resolution diffusion weighted MRI.
Co-chair of Program Committee of DNA 23 (2017).
In Program Committee of DNA 19 (2013), DNA 20 (2014), DNA 22 (2016), DNA 24 (2018), DNA 25 (2019).
In Program Committee of Posters and Demos Track of ISWC 2016, ISWC 2017, ISWC 2018, ISWC 2019.
Co-editor of the Proceedings of DNA 23 (2017). Lecture Notes in Computer Science (LNCS), volume 10467.
Co-editor of the Special Issue of Natural Computing devoted to significantly extended versions of selected papers presented at DNA 23. Preface.

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