Source: https://publications.computationalscience.nl/page/2/
Timestamp: 2019-04-25 05:52:42+00:00

Document:
S. Litescu, V. Viswanathan, M. Lees, A. Knoll, and H. Aydt. Information impact on transportation systems. Journal of Computational Science 9, pp. 88-93.
R. Hoekstra, S. Magliacane, L. Rietveld, G. de Vries, A. Wibisono, and S. Schlobach. Hubble: Linked Data Hub for Clinical Decision Support. In: The Semantic Web: ESWC 2012 Satellite Events. ISBN 9783662466407. pp. 458-462.
P. A. C. Duijn and P. M. A. Sloot. From Data to Disruption. Digital Investigation 11, pp. 39-45.
M. Wagner, W. Cai, M. Lees, and H. Aydt. Evolving agent-based models using self-adaptive complexification. Journal of Computational Science 10, pp. 351-359.
J. Zhong, N. Hu, W. Cai, M. Lees, and L. Luo. Density-based evolutionary framework for crowd model calibration. Journal of Computational Science 6, pp. 11-22.
S. Mei, N. Zarrabi, M. Lees, and P. M. A. Sloot. Complex agent networks: An emerging approach for modeling complex systems. Applied Soft Computing 37, pp. 311-321.
Y. Xu, W. Cai, H. Aydt, M. Lees, and D. Zehe. An Asynchronous Synchronization Strategy for Parallel Large-scale Agent-based Traffic Simulations. In: SIGSIM-PADS'15. ISBN 9781450335836. pp. 259-269.
C. Dumitru, P. Grosso, and C. de Laat. A user-centric execution environment for CineGrid workloads. Future Generation Computer Systems 53, pp. 55-62.
L. Luo, W. Cai, S. Zhou, M. Lees, and H. Yin. A review of interactive narrative systems and technologies. Simulation 91(2), pp. 126-147.
D. Pelzer, J. Xiao, D. Zehe, M. H. Lees, A. C Knoll, and H. Aydt. A partition-based match making algorithm for dynamic ridesharing. IEEE Transactions on Intelligent Transportation Systems 16(5), pp. 2587-2598.
N. Javaheri, R Dries, and J. Kaandorp. Understanding the Sub-Cellular Dynamics of Silicon Transportation and Synthesis in Diatoms Using Population-Level Data and Computational Optimization. PLoS Computational Biology 10(6), e1003687.
H. Aydt, M. H. Lees, S. J. Turner, and W. Cai. Toward Simulation-Based Egress Optimization in Smart Buildings Using Symbiotic Simulation. In: Pedestrian and Evacuation Dynamics 2012. ISBN 9783319024462. pp. 987-999.
W. Duan, R. Quax, M. Lees, X. Qiu, and P. M. A. Sloot. Topology dependent epidemic spreading velocity in weighted networks. Journal of Statistical Mechanics : Theory and Experiment 2014(12), P12020.
K. Mikhailov. The use of genetic algorithms to find an optimum MHD as an approximate description of holes. Supervised by S. Markoff and A. Boukhanovsky.
P. Ramos-Silva, J. Kaandorp, F. Herbst, L. Plasseraud, G. Alcaraz, C. Stern, M. Corneillat, N. Guichard, C. Durlet, G. Luquet, and F. Marin. The skeleton of the staghorn coral Acropora millepora: molecular and structural characterization. PLoS One 9(6), e97454.
D. Roy, M. H. Lees, B. Palavalli, K. Pfeffer, and P. M. A. Sloot. The emergence of slums: A contemporary view on simulation models. Environmental Modelling & Software 59, pp. 76-90.
P. A. C. Duijn, V. Kashirin, and P. M. A. Sloot. The Relative Ineffectiveness of Criminal Network Disruption. Scientific Reports 4, 4238.
V. Savickas, N. Hari, T. Wood, and D. Kandhai. Super Fast Greeks: An Application to Counterparty Valuation Adjustments. Wilmott 69, pp. 76-80.
A. Klimkina. Study of the news spread among social network user with respect to their stakeholdership. Supervised by R. Quax and A. Yakushev.
S. A. Cheong, T. L. Tan, C.-C. Chen, W.-L. Chang, Z. Liu, L. Y. Chew, P. M. A. Sloot, and N. F. Johnson. Short-Term Forecasting of Taiwanese Earthquakes Using a Universal Model of Fusion-Fission Processes. Scientific Reports 4, 3624.
V. Viswanathan, C. E. Lee, M. H. Lees, S. A. Cheong, and P. M. A. Sloot. Quantitative Comparison Between Crowd Models for Evacuation Planning and Evaluation. The European Physical Journal B. Condensed Matter Physics 87(2), 27.
A. Chirkin. Multi-objective optimization approach to infer Drosophila gene regulatory parameters. Supervised by A. S. Z. Belloum and S. Kovalchuk.
C. D. Erdbrink. Modelling flow-induced vibrations of gates in hydraulic structures. ISBN 9789064648007. Supervised by P. M. A. Sloot and V. V. Krzhizhanovskaya.
R. Strijkers, M. X. Makkes, C. de Laat, and R. Meijer. Internet factories: Creating application-specific networks on-demand. Computer Networks 68, pp. 187-198.
L. J. Dijkstra, A. V. Yakushev, P. A. C. Duijn, A. V. Boukhanovsky, and P. M. A. Sloot. Inference of the Russian drug community from one of the largest social networks in the Russian Federation. Quality and Quantity 48(5), pp. 2739-2755.
S. Mei, Y. Zhu, X. Qiu, X. Zhou, Z. Zu, A. V. Boukhanovsky, and P. M. A. Sloot. Individual decision making can drive epidemics: a fuzzy cognitive map study. IEEE Transactions on Fuzzy Systems 22(2), pp. 264-273.
N. B. Melnikova. Finite element analysis of levee stability for flood early warning systems. ISBN 9789064648069. Supervised by P. M. A. Sloot and V. V. Krzhizhanovskaya.
K. Ullrich. Feed-forward neural networks for boundary detection in music structure analysis. Supervised by M. Welling and G. Widmer.
M. Wagner, W. Cai, M. H. Lees, and H. Aydt. Evolving Agent-based Models Using Complexification Approach. Procedia Computer Science 29, pp. 310-321.
J. O. Oelerich, F. Jansson, A. V. Nenashev, F. Gebhard, and S. D. Baranovskii. Energy position of the transport path in disordered organic semiconductors. Journal of Physics-Condensed Matter 26(25), 255801.
Y. Xu, W. Cai, H. Aydt, and M. Lees. Efficient graph-based dynamic load-balancing for parallel large-scale agent-based traffic simulation. In: Proceedings of the 2014 Winter Simulation Conference: exploring big data through simulation: December 7-10, 2014, Westin Savannah Harbor Resort, Savannah, GA. ISBN 9781479974849. pp. 3483-3494.
C. S. L. de Graaf, Q. Feng, D. Kandhai, and C. W. Oosterlee. Efficient Computation of Exposure Profiles for Counterparty Credit Risk. International Journal of Theoretical and Applied Finance 17(4), 1450024.
J. Zhong, W. Cai, L. Luo, and M. Lees. EA-based evacuation planning using agent-based crowd simulation. In: Proceedings of the 2014 Winter Simulation Conference: exploring big data through simulation: December 7-10, 2014, Westin Savannah Harbor Resort, Savannah, GA. ISBN 9781479974849. pp. 395-406.
J. Borgdorff. Distributed multiscale computing. ISBN 9789462592353. Supervised by P. M. A. Sloot and A. G. Hoekstra.
A. L. Pyayt. Data-driven methods in application to flood defence systems monitoring and analysis. ISBN 9789064648052. Supervised by P. M. A. Sloot and V. V. Krzhizhanovskaya.
J. Zhong, L. Luo, W. Cai, and M. Lees. Automatic Rule Identification for Agent-Based Crowd Models Through Gene Expression Programming. In: AAMAS '14: proceedings of the 2014 International Conference on Autonomous Agents & Multiagent Systems: May 5-9, 2014, Paris, France. ISBN 9781450327381. pp. 1125-1132.
T. I. Jung, F. Vogiatzian, O. Har-Shemesh, C. P. Fitzsimons, and R. Quax. Applying Information Theory to Neuronal Networks: From Theory to Experiments. Entropy 16(11), pp. 5721-5737.
Y. H. A. Teo, V. Viswanathan, M. Lees, and W. Cai. Analysing the Effectiveness of Wearable Wireless Sensors in Controlling Crowd Disasters. Procedia Computer Science 29, pp. 1590-1599.
S. Madougou, A. L. Varbanescu, C. de Laat, and R. van Nieuwpoort. An empirical evaluation of GPGPU performance models. In: Euro-Par 2014: Parallel Processing Workshops. ISBN 9783319143248. 1, pp. 165-176.
E. Mancini. Agent based modeling of viral infections: an investigation across several spatio-temporal scales. Supervised by P. M. A. Sloot.
Q. C. Bui, P. M. A. Sloot, E. M. van Mulligen, and J. A. Kors. A novel feature-based approach to extract drug-drug interactions from biomedical text. Bioinformatics 30(23), pp. 3365-3371.
C. Tamulonis and J. Kaandorp. A model of filamentous cyanobacteria leading to reticulate pattern formation. Life (Basel) 4(3), pp. 433-456.
D. Botman, E. Röttinger, M. Q. Martindale, J. de Jong, and J. A. Kaandorp. A computational approach towards a gene regulatory network for the developing Nematostella vectensis gut. PLoS One 9(7), e103341.
A. L. Pyayt, I. I. Mokhov, and A. P. Kozionov. Интеллектуальная система мониторинга состояния объектов критической инфраструктуры. Integral 2013(4), pp. 84-86.
E. R. Dugundji and L. Gulyás. Understanding Emergence in a Fully-Specified Nested Logit Model.
R. Quax, A. Apolloni, and P. M. A. Sloot. Towards understanding the behavior of physical systems using information theory. The European Physical Journal - Special Topics 222(6), pp. 1389-1401.
D. van Dijk. The symphony of gene regulation. Supervised by P. M. A. Sloot and J. A. Kaandorp.
P. Ramos-Silva, J. Kaandorp, L. Huisman, B. Marie, I. Zanella-Cléon, N. Guichard, D. J. Miller, and F. Marin. The skeletal proteome of the coral Acropora millepora: the evolution of calcification by co-option and domain shuffling. Molecular Biology and evolution 30(9), pp. 2099-2112.
B. Marie, D. J. Jackson, P. Ramos-Silva, I. Zanella-Cléon, N. Guichard, and F. Marin. The shell-forming proteome of Lottia gigantea reveals both deep conservations and lineage-specific novelties. The FEBS Journal 280(1), pp. 214-232.
N. Toth, L. Gulyas, R. O. Legendi, P. Duijn, P. M. A. Sloot, and G. Kampis. The importance of centralities in dark network value chains. The European Physical Journal - Special Topics 222(6), pp. 1413-1439.
R. Quax, A. Apolloni, and P. M. A. Sloot. The diminishing role of hubs in dynamical processes on complex networks. Journal of the Royal Society Interface 10(88), 20130568.
P. Sequeira dos Ramos Silva. The biocalcification of mollusk shells and coral skeletons: Integrating molecular, proteomics and bioinformatics methods. ISBN 9789810785635. Supervised by P. M. A. Sloot, J. A. Kaandorp, and F. G. Marin.
T. Ishiyama, S. Rieder, J. Makino, S. Portegies Zwart, D. Groen, K. Nitadori, C. de Laat, S. McMillan, K. Hiraki, and S. Harfst. The Cosmogrid simulation: Statistical properties of small dark matter halos. Astrophysical Journal 767(2), 146.
I. Bartha, M. Assel, P. M. A. Sloot, M. Zazzi, C. Torti, E. Schülter, A. De Luca, A. Sönnerborg, A. B. Abecasis, K. Van Laethem, A. Rosi, J. Svärd, R. Paredes, D. A. M. C. van de Vijver, and A.-M. Vandamme. Superinfection with drug-resistant HIV is rare and does not contribute substantially to therapy failure in a large European cohort. BMC Infectious Diseases 13, p. 537.
A. Czaplicka, J. A. Hołyst, and P. M. A. Sloot. Stochastic resonance for information flows on hierarchical networks. The European Physical Journal - Special Topics 222(6), pp. 1335-1345.
J. Hofman. SPVAs: Grid GPU Implementation \& Risk Assessment of Investment Strategies. Supervised by B. D. Kandhai, D. Schrager, and V. Sergeev.
J. T. I. Tanzil, B. E. Brown, R. P. Dunne, J. N. Lee, J. A. Kaandorp, and P. A. Todd. Regional decline in growth rates of massive Porites corals in Southeast Asia. Global Change Biology 19(10), pp. 3011-3023.
P. Libin, G. Beheydt, K. Deforche, S. Imbrechts, F. Ferreira, K. Van Laethem, K. Theys, A. P. Carvalho, J. Cavaco-Silva, G. Lapadula, C. Torti, M. Assel, S. Wesner, J. Snoeck, and J. Ruelle. RegaDB: Community-driven data management and analysis for infectious diseases. Bioinformatics 29(11), pp. 1477-1480.
L. B. Carey, D. van Dijk, P. M. A. Sloot, J. A. Kaandorp, and E. Segal. Promoter sequence determines the relationship between expression level and noise. PLoS Biology 11(4), e1001528.
A. Afanasyeva, S. Ponyaev, and V. Krgiganovskaya. Numerical simulation of synthesis of fullerenes by the arc discharge method. Journal of Physics. Conference Series 461, 012043.

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