Source: http://www.fbb.msu.ru/doc/index.php?ID=171
Timestamp: 2019-04-18 22:58:06+00:00

Document:
Computational reconstruction of iron- and manganese-responsive transcriptional networks in alpha-proteobacteria.
Rodionov, D. A.; Gelfand, M. S.; Todd, J. D.; Curson, A. R.; Johnston, A. W.
PLoS Comput Biol. 2006 Dec 15;2(12):e163. Epub 2006 Oct 18.
Uncoupling effect of lauryl sulfate on mitochondria can be mediated by release of bound endogenous fatty acids.
Simonian, R. A.; Pustovidko, A. V.; Vyssokikh, M. I. u.; Skulachev, V. P.
Theoretical model of interactions between ligand-binding sites in a dimeric protein and its application for the analysis of thiamine diphosphate binding to yeast transketolase.
Ospanov, R.; Kochetov, G.; Kurganov, B.
Biophys Chem. 2006 Nov 20;124(2):106-14. Epub 2006 Jun 15.
Identification of Escherichia coli m2G methyltransferases: II. The ygjO gene encodes a methyltransferase specific for G1835 of the 23 S rRNA.
Sergiev, P. V.; Lesnyak, D. V.; Bogdanov, A. A.; Dontsova, O. A.
J Mol Biol. 2006 Nov 17;364(1):26-31. Epub 2006 Sep 8.
Identification of Escherichia coli m2G methyltransferases: I. the ycbY gene encodes a methyltransferase specific for G2445 of the 23 S rRNA.
Lesnyak, D. V.; Sergiev, P. V.; Bogdanov, A. A.; Dontsova, O. A.
J Mol Biol. 2006 Nov 17;364(1):20-5. Epub 2006 Sep 8.
Human hair growth deficiency is linked to a genetic defect in the phospholipase gene LIPH.
Kazantseva, A.; Goltsov, A.; Zinchenko, R.; Grigorenko, A. P.; Abrukova, A. V.; Moliaka, Y. K.; Kirillov, A. G.; Guo, Z.; Lyle, S.; Ginter, E. K.; Rogaev, E. I.
Mechanism of thermal aggregation of rabbit muscle glyceraldehyde-3-phosphate dehydrogenase.
Markossian, K. A.; Khanova, H. A.; Kleimenov, S. Y.; Levitsky, D. I.; Chebotareva, N. A.; Asryants, R. A.; Muronetz, V. I.; Saso, L.; Yudin, I. K.; Kurganov, B. I.
Use of the flux model of amino acid metabolism of Escherichia coli.
Lyubetskaya, A. V.; Rubanov, L. I.; Gelfand, M. S.
Kinetic mechanism of the bifunctional enzyme prostaglandin-H-synthase. Effect of electron donors on the cyclooxygenase reaction.
Tsaplina, L. A.; Karatasso, Y. O.; Filimonov, I. S.; Vrzheshch, P. V.
Morphology and nrITS phylogeny of the genus Pinguicula L. (Lentibulariaceae), with special attention to embryo evolution.
Degtjareva, G. V.; Casper, S. J.; Hellwig, F. H.; Schmidt, A. R.; Steiger, J.; Sokoloff, D. D.
Plant Biol (Stuttg). 2006 Nov;8(6):778-90.
Mapping contacts of the S12-S7 intercistronic region of str operon mRNA with ribosomal protein S7 of E. coli.
Golovin, A.; Spiridonova, V.; Kopylov, A.
FEBS Lett. 2006 Oct 30;580(25):5858-62. Epub 2006 Oct 2.
Comparative genomics and experimental characterization of N-acetylglucosamine utilization pathway of Shewanella oneidensis.
Yang, C.; Rodionov, D. A.; Li, X.; Laikova, O. N.; Gelfand, M. S.; Zagnitko, O. P.; Romine, M. F.; Obraztsova, A. Y.; Nealson, K. H.; Osterman, A. L.
J Biol Chem. 2006 Oct 6;281(40):29872-85. Epub 2006 Jul 20.
Red fluorescent protein DsRed: parametrization of its chromophore as an amino acid residue for computer modeling in the OPLS-AA force field.
Dmitrienko, D. V.; Vrzheshch, E. P.; Drutsa, V. L.; Vrzheshch, P. V.
Recognition of transmembrane segments in proteins: review and consistency-based benchmarking of internet servers.
Sadovskaya, N. S.; Sutormin, R. A.; Gelfand, M. S.
J Bioinform Comput Biol. 2006 Oct;4(5):1033-56.
Comparative genomics of transcriptional regulation in yeasts and its application to identification of a candidate alpha-isopropylmalate transporter.
Kovaleva, G. Y.; Bazykin, G. A.; Brudno, M.; Gelfand, M. S.
J Bioinform Comput Biol. 2006 Oct;4(5):981-98.
Participation of ATP/ADP antiporter in oleate- and oleate hydroperoxide-induced uncoupling suppressed by GDP and carboxyatractylate.
Khailova, L. S.; Prikhodko, E. A.; Dedukhova, V. I.; Mokhova, E. N.; Popov, V. N.; Skulachev, V. P.
Biochim Biophys Acta. 2006 Sep-Oct;1757(9-10):1324-9. Epub 2006 May 9.
Amino acid residues that determine functional specificity of NADP- and NAD-dependent isocitrate and isopropylmalate dehydrogenases.
Kalinina, O. V.; Gelfand, M. S.
If cancer is a special case of phenoptosis, how can we conquer it?
Optimal spectral coordination of subantennae in natural antennae as an efficient strategy for light harvesting in photosynthesis.
Novikov, A. A.; Taisova, A. S.; Fetisova, Z. G.
J Bioinform Comput Biol. 2006 Aug;4(4):887-909.
[EDAS, databases of alternatively spliced human genes].
Nurtdinov, R. N.; Neverov, A. D.; Mal'ko, D. B.; Kosmodem'ianskii, I. A.; Ermakova, E. O.; Ramenskii, V. E.; Mironov, A. A.; Gel'fand, M. S.
PHOG: a database of supergenomes built from proteome complements.
Merkeev, I. V.; Novichkov, P. S.; Mironov, A. A.
BMC Evol Biol. 2006 Jun 22;6:52.
PHOG-BLAST--a new generation tool for fast similarity search of protein families.
Merkeev, I. V.; Mironov, A. A.
BMC Evol Biol. 2006 Jun 22;6:51.
Brain pyruvate and 2-oxoglutarate dehydrogenase complexes are mitochondrial targets of the CoA ester of the Refsum disease marker phytanic acid.
Bunik, V. I.; Raddatz, G.; Wanders, R. J.; Reiser, G.
FEBS Lett. 2006 Jun 12;580(14):3551-7. Epub 2006 May 24.
Spirin, V.; Gelfand, M. S.; Mironov, A. A.; Mirny, L. A.
Comparative genomics of regulation of heavy metal resistance in Eubacteria.
Permina, E. A.; Kazakov, A. E.; Kalinina, O. V.; Gelfand, M. S.
BMC Microbiol. 2006 Jun 5;6:49.
Antibodies to inactive conformations of glyceraldehyde-3-phosphate dehydrogenase inactivate the apo- and holoforms of the enzyme.
Arutiunova, E. I.; Pleten, A. P.; Nagradova, N. K.; Muronetz, V. I.
Evolution of transcriptional regulatory networks in microbial genomes.
Curr Opin Struct Biol. 2006 Jun;16(3):420-9. Epub 2006 May 2.
[Membrane probability profile construction based on amino acids sequences multiple alignment].
Sutormin, R. A.; Mironov, A. A.
Mol Biol (Mosk). 2006 May-Jun;40(3):541-5.
[ClusterTree-RS: the binary tree algorithm for identification of co-regulated genes by clustering regulatory signals].
Stavrovskaia, E. D.; Makeev, V. I. u.; Mironov, A. A.
Mol Biol (Mosk). 2006 May-Jun;40(3):524-32.
Fast rate of evolution in alternatively spliced coding regions of mammalian genes.
Ermakova, E. O.; Nurtdinov, R. N.; Gelfand, M. S.
BMC Genomics. 2006 Apr 18;7:84.
Bioenergetic aspects of apoptosis, necrosis and mitoptosis.
Unfolded, oxidized, and thermoinactivated forms of glyceraldehyde-3-phosphate dehydrogenase interact with the chaperonin GroEL in different ways.
Naletova, I. N.; Muronetz, V. I.; Schmalhausen, E. V.
Biochim Biophys Acta. 2006 Apr;1764(4):831-8. Epub 2006 Mar 6.
Evolution of exon-intron structure and alternative splicing in fruit flies and malarial mosquito genomes.
Malko, D. B.; Makeev, V. J.; Mironov, A. A.; Gelfand, M. S.
Genome Res. 2006 Apr;16(4):505-9. Epub 2006 Mar 6.
RNAKinetics: a web server that models secondary structure kinetics of an elongating RNA.
Danilova, L. V.; Pervouchine, D. D.; Favorov, A. V.; Mironov, A. A.
J Bioinform Comput Biol. 2006 Apr;4(2):589-96.
Polymorphism in the 5'-promoter region of serine racemase gene in schizophrenia.
Goltsov, A. Y.; Loseva, J. G.; Andreeva, T. V.; Grigorenko, A. P.; Abramova, L. I.; Kaleda, V. G.; Orlova, V. A.; Moliaka, Y. K.; Rogaev, E. I.
Short fuzzy tandem repeats in genomic sequences, identification, and possible role in regulation of gene expression.
Boeva, V.; Regnier, M.; Papatsenko, D.; Makeev, V.
Bioinformatics. 2006 Mar 15;22(6):676-84. Epub 2006 Jan 10.
A new method for spectrophotometric assay of activity of cross-linked penicillin acylase aggregates.
Pchelintsev, N. A.; Youshko, M. I.; Svedas, V. K.
Complete mitochondrial genome and phylogeny of Pleistocene mammoth Mammuthus primigenius.
Rogaev, E. I.; Moliaka, Y. K.; Malyarchuk, B. A.; Kondrashov, F. A.; Derenko, M. V.; Chumakov, I.; Grigorenko, A. P.
PLoS Biol. 2006 Mar;4(3):e73. Epub 2006 Feb 7.
Computational identification of BioR, a transcriptional regulator of biotin metabolism in Alphaproteobacteria, and of its binding signal.
Rodionov, D. A.; Gelfand, M. S.
FEMS Microbiol Lett. 2006 Feb;255(1):102-7.
Low cetyltrimethylammonium bromide concentrations induce reversible amorphous aggregation of tobacco mosaic virus and its coat protein at room temperature.
Panyukov, Y. V.; Nemykh, M. A.; Rafikova, E. R.; Kurganov, B. I.; Yaguzhinsky, L. S.; Arutyunyan, A. M.; Drachev, V. A.; Dobrov, E. N.
Int J Biochem Cell Biol. 2006;38(4):533-43. Epub 2005 Nov 14.

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