Source: http://people.oregonstate.edu/~crumpb/publications.html
Timestamp: 2019-04-23 01:57:19+00:00

Document:
Herfort, L., B. C. Crump, C. S. Fortunato, L. A. McCue, V. Campbell, H. M. Simon, A. M. Baptista, and P. Zuber. 2017. Factors affecting the bacterial community composition and heterotrophic production of Columbia River estuarine turbidity maxima. MicrobiologyOpen 6:15.
Coles, V. J., M. R. Stukel, M. T. Brooks, A. Burd, B. C. Crump, M. A. Moran, J. H. Paul, B. M. Satinsky, P. L. Yager, B. L. Zielinski, and R. R. Hood. 2017. Ocean biogeochemistry modeled with emergent trait-based genomics. Science 358:1149.
Crump, B. C., L. M. Fine, C. S. Fortunato, L. Herfort, J. A. Needoba, S. Murdock, and F. G. Prahl. 2017. Quantity and quality of particulate organic matter controls bacterial production in the Columbia River estuary. Limnology and Oceanography 62:2713-2731. doi:10.1002/lno.10601.
Ward, C. P., S. G. Nalven, B. C. Crump, G. W. Kling, and R. M. Cory. 2017. Photochemical alteration of organic carbon draining permafrost soils shifts microbial metabolic pathways and stimulates respiration. Nature Communications 8:8.
Gradoville, M. R., D. Bombar, B. C. Crump, R. M. Letelier, J. P. Zehr, and A. E. White. 2017. Diversity and activity of nitrogen-fixing communities across ocean basins. Limnology and Oceanography 62:1895-1909.
Smith, M. W., L. Herfort, C. S. Fortunato, B. C. Crump, and H. M. Simon. 2017. Microbial players and processes involved in phytoplankton bloom utilization in the water column of a fast-flowing, river-dominated estuary. MicrobiologyOpen 6:13.
Hosen, J. D., C. M. Febria, B. C. Crump, and M. A. Palmer. 2017. Watershed Urbanization Linked to Differences in Stream Bacterial Community Composition. Frontiers in Microbiology 8:1452, DOI: 10.3389/fmicb.2017.01452.
Gradoville, M. R., B. C. Crump, R. M. Letelier, M. J. Church, and A. E. White. 2017. Microbiome of Trichodesmium Colonies from the North Pacific Subtropical Gyre. Frontiers in Microbiology 8:1122, DOI: 10.3389/fmicb.2017.01122.
Satinsky, B. M., C. B. Smith, S. Sharma, M. Landa, P. M. Medeiros, V. J. Coles, P. L. Yager, B. C. Crump, and M. A. Moran. 2017. Expression patterns of elemental cycling genes in the Amazon River Plume. ISME Journal 11:1852-1864, DOI: 10.1038/ismej.2017.46.
Eggleston, E. M, Lee, D. Y., Owens, M. S., Cornwell, J. C., Crump, B. C., and I. Hewson. 2015. Key respiratory genes elucidate bacterial community respiration in a seasonally anoxic estuary. Environmental Microbiology DOI: 10.1111/1462-2920.12690.
Shaw, K. S., A. R.,Sapkota, J. M. Jacobs, X. He, and B. C. Crump. 2015. Recreational Swimmers’ Exposure to Vibrio vulnificus and Vibrio parahaemolyticus in the Chesapeake Bay, Maryland, USA. Environment International 74:99-105.
Satinsky, B., B. Zielinski, M. Doherty, C. Smith, S. Sharma, J. Paul, B. Crump, and M. Moran. 2014. The Amazon continuum dataset: quantitative metagenomic and metatranscriptomic inventories of the Amazon River plume, June 2010. Microbiome 2:17 http://www.microbiomejournal.com/content/2/1/17.
Kling, G. W., H. E. Adams, N. D. Bettez, W. B. Bowden, B. C. Crump, A. E. Giblin, K. E. Judd, K. Keller, G. W. Kipphut, and E. R. Rastetter. 2014. Land–Water Interactions. Alaska's Changing Arctic: Ecological Consequences for Tundra, Streams, and Lakes:143.
Luecke, C., A. E. Giblin, N. D. Bettez, G. A. Burkart, B. C. Crump, M. A. Evans, G. Gettel, S. MacIntyre, W. J. O’Brien, and P. A. Rublee. 2014. The Response of Lakes Near the Arctic LTER to Environmental Change. Alaska's Changing Arctic: Ecological Consequences for Tundra, Streams, and Lakes:238.
Lee, D. Y., M. S. Owens, M. Doherty, E. M. Eggleston, I. Hewson, B. C. Crump, and J. C. Cornwell. 2014. The Effects of Oxygen Transition on Community Respiration and Potential Chemoautotrophic Production in a Seasonally Stratified Anoxic Estuary. Estuaries and Coasts:1-14.
Shaw, K. S., R. E. Rosenberg Goldstein, X. He, J. M. Jacobs, B. C. Crump, and A. R. Sapkota. 2014. Antimicrobial susceptibility of Vibrio vulnificus and Vibrio parahaemolyticus recovered from recreational and commercial areas of Chesapeake Bay and Maryland Coastal Bays. PLOS One 9(2): e89616, doi:10.1371/journal.pone.0089616.
Hewson I, E. Eggleston, M. Doherty, D. Y. Lee, M. Owens, J. P. Shipleigh, J. C. Cornwell, and B. C. Crump. 2014. Metatranscriptomic analyses of plankton communities inhabiting surface and sub-pycnocline waters of the Chesapeake Bay during oxic-anoxic-oxic transitions. Applied and Environmental Microbiology 80:328-338, DOI: 10.1128/AEM.02680-13.
Fortunato, C. S., Eiler, A., Herfort, L., Needoba, J. A., Peterson, T. D., and B. C. Crump. 2013. Determining indicator taxa across spatial and seasonal gradients in the Columbia River coastal margin. The ISME Journal 7:1899-1911, doi:10.1038/ismej.2013.79.
Malpezzi, M. M., L. P. Sanford, and B. C. Crump. 2013. Transparent Exopolymer Particles in the Chesapeake Bay Estuarine Turbidity Maximum. Marine Ecology Progress Series 486:23–35.
Cory R. M., Crump B. C., Dobkowski J. A, and G. W. Kling. 2013. Surface exposure to sunlight stimulates CO2 release from permafrost soil carbon in the Arctic. Proc. Natl. Acad. Sci. U. S. A. DOI 10.1073/pnas.1214104110.
Lee, D.Y., D. P. Keller, B. C. Crump, and R. R. Hood. 2012. Community metabolism and energy transfer in the Chesapeake Bay estuarine turbidity maximum. Marine Ecology Progress Series 449:65-82.
Herfort, L., T. D. Peterson, F. G. Prahl, L. A. McCue, J. Needoba, B. C. Crump, G. C. Roegner, V. Campbell, and P. Zuber. 2012. Red waters of Myrionecta rubra are biogeochemical hotspots for the Columbia River estuary with impacts on primary/secondary productions and nutrient cycles. Estuaries and Coasts 35(3):878-891.
Larouche, J. R., Bowden, W. B., Giordano, R., Flinn, M. B., and B. C. Crump. 2012. Microbial biogeography of arctic streams: exploring influences of lithology and habitat. Frontiers in Microbiology DOI:10.3389/fmicb.2012.00309.
Crump, B. C., L. A. Amaral-Zettler, G. W. Kling. 2012. Microbial diversity in arctic freshwaters is structured by inoculation of microbes from soils. ISME Journal doi:10.1038/ismej.2012.9.
Fortunato, C. S., L. Herfort, P. Zuber, A. M. Baptista, and B. C. Crump. 2012. Spatial variability overwhelms seasonal patterns in bacterioplankton communities across a river to ocean gradient. The ISME Journal 6:554-563.
Fortunato, C. S., and B. C. Crump. 2011. Bacterioplankton community variation along river to ocean environmental gradients. Microbial Ecology 62:374-382.
Smit, M. W., L. Herfort, K. Tyrol, D. Suciu, V. Campbell, B. C. Crump, T. D. Peterson, P. Zuber, A. M. Baptista, and H. M. Simon. 2010. Seasonal Changes in Bacterial and Archaeal Gene Expression Patterns Across Salinity Gradients of the Columbia River Coastal Margin. PLOS One 5(10): e13312. doi:10.1371/journal.pone.0013312.
Breitburg, D. L., B. C. Crump, J. O. Dabiri, and C. Gallegos. 2010. Ecosystem engineers in the pelagic realm: alteration of habitat by species ranging from microbes to jellyfish. Integrative and Comparative Biology 50:188-200.
Adams, H. E., B. C. Crump, and G. W. Kling. 2010. Temperature controls on aquatic bacterial production and community dynamics in arctic lakes and streams. Environmental Microbiology 12:1319-1333.
Crump, B. C., B. J. Peterson, P. A. Raymond, R. M. W. Amon, A. Rinehart, J. W. McClelland, and R. M. Holmes. 2009. Circumpolar Synchrony in Big River Bacterioplankton. Proceedings of the National Academy of Sciences, USA 106(50): 21208–21212.
Bowen, J. L., B. C. Crump, L. A. Deegan, and J. E. Hobbie. 2009. Biogeography of salt marsh sediment bacteria and response to external nitrogen inputs as measured by denaturing gradient gel electrophoresis. The ISME Journal 3:924-934.
Bowen, J. L., B. C. Crump, L. A. Deegan and J. E. Hobbie. 2009. Increased supply of ambient nitrogen has minimal effect on salt marsh bacterial production. Limnology and Oceanography 54: 713-722.
Crump, B. C., and E. W. Koch. 2008. Attached Bacterial Populations Shared by Four Species of Aquatic Angiosperms. Applied and Environmental Microbiology 74:5948-5957 [UMCES Contribution No. 4243].
Crump, B. C., C. Peranteau, B. Beckingham, and J. C. Cornwell. 2007. Respiratory succession and community succession of bacterioplankton in seasonally anoxic estuarine waters. Applied and Environmental Microbiology 73:6802-6810 [UMCES Contribution No. 4139].
Crump, B. C., H. E. Adams, J. E. Hobbie, and G. W. Kling. 2007. Biogeography of freshwater bacterioplankton in lakes and streams of an Arctic tundra catchment. Ecology 88:1365-1378 [UMCES Contribution No. 4140].
Judd, K. E., B. C. Crump, and G. W. Kling. 2007. Bacterial responses in activity and community composition to photo-oxidation of dissolved organic matter from soil and surface waters. Aquatic Sciences 69:96-107 [UMCES Contribution No. 4081].
Kan J., B. C. Crump, K. Wang, and F. Chen. 2006. Bacterioplankton community in Chesapeake Bay: Predictable or random assemblages. Limnology and Oceanography 51:2157-2169 [UMCES Contribution No. 4079].
Judd, K. E., B. C. Crump, and G. W. Kling. 2006. Variation in dissolved organic matter controls bacterial production and community composition. Ecology 87:2068-2079 [UMCES Contribution No. 4080].
Crump B. C., and J. E. Hobbie. 2005. Synchrony and seasonality in bacterioplankton diversity of two temperate rivers. Limnology and Oceanography 50:1718-1729. [UMCES Contribution No. 3944].
Bahr, M., B. C. Crump, J. E. Hobbie, and A. Teske. 2005. Molecular characterization of sulfate-reducing prokaryotes during an annual cycle in a New England salt marsh. Environmental Microbiology 7(8):1175-1185. [UMCES Contribution No. 3834].
Crump, B. C., C. S. Hopkinson, M. L. Sogin, and J. E. Hobbie. 2004. Microbial biogeography along an estuarine salinity gradient: the combined influences of bacterial growth and residence time. Applied and Environmental Microbiology 70:1494-1505. [UMCES Contribution No. 3831].
Zwart G., E. J. van Hannen, A. P. Kamst-van Agterveld, K. van der Gucht, E. S. Lindström, J. Van Wichelen, T. Lauridsen, B. C. Crump, S. K. Han, and S. Declerck. 2003. Rapid screening for freshwater bacterial groups using reverse line blot hybridization. Applied and Environmental Microbiology 69: 5875-5883.
Crump, B. C., M. Bahr, G. W. Kling, and J. E. Hobbie. 2003. Bacterioplankton community shifts in an arctic lake correlate with seasonal changes in organic matter source. Applied and Environmental Microbiology 69:2253-2268.
Levine, U. Y., and B. C. Crump. 2002. Bacterioplankton community composition in flowing waters of the Ipswich River watershed. Biological Bulletin 203:251-252.
Zwart G., B. C. Crump, M. P. Kamst-van Agterveld, F. Hagen, and S. K. Han. 2002. Typical freshwater bacteria: an analysis of available 16S rRNA gene sequences from plankton of freshwater lakes and rivers. Aquatic Microbial Ecology 28:141-155.
Crump, B. C., and J. A. Baross. 2000. Characterization of the bacterially-active particle fraction in the Columbia River estuary. Marine Ecology Progress Series 206:13-22.
Crump, B. C., and J. A. Baross. 2000. Archaeaplankton in the Columbia River, its estuary, and the adjacent coastal ocean, USA. FEMS Microbiology Ecology 31:231-239.
Crump, B. C., E. V. Armbrust, and J.A. Baross. 1999. Phylogenetic analysis of particle-attached and free-living bacterial communities in the Columbia River, its estuary, and the adjacent coastal ocean. Applied and Environmental Microbiology 65:3192-3204.
Hopkinson, C., I. Buffam, J. Hobbie, J. Vallino, M. Perdue, B. Eversmeyer, F. Prahl, J. Covert, R. Hodson, M. A. Moran, E. Smith, J. Baross, B. Crump, S. Findlay, and K. Foreman. 1998. Terrestrial inputs of organic matter to coastal ecosystems: an intercomparison of chemical characteristics and bioavailability. Biogeochemistry 43:211-234.
Prahl, F. G., L. F. Small, B. A. Sullivan, J. Cordell, C. A. Simenstad, B. C. Crump, and J. A. Baross. 1998. Biogeochemical gradients in the lower Columbia River. Hydrobiologia 361:37-52.
Crump, B. C., J. A. Baross, and C. A. Simenstad. 1998. Dominance of particle-attached bacteria in the Columbia River estuary, USA. Aquatic Microbial Ecology 14:7-18.
Crump, B. C., and J. A. Baross. 1996. Particle-attached bacteria and heterotrophic plankton associated with the Columbia River estuarine turbidity maxima. Marine Ecology Progress Series 138:265-273.
Baross, J. A., B. C. Crump, and C. A. Simenstad. 1994. Elevated 'microbial loop' activities in the Columbia River estuarine turbidity maximum. In: Dyer KR, Orth RJ (eds.) Changes in fluxes in estuaries: Implications from science to management (ECSA/ERF symposium, Plymouth, September 1992). Olsen & Olsen, Fredenborg, Denmark, p 459-464.
Pledger, R. J., B. C. Crump, and J. A. Baross. 1994. A barophilic response by two hyperthermophilic, hydrothermal vent Archaea: An upward shift in the optimal temperature and acceleration of growth rate at supra-optimal temperatures by elevated pressure. FEMS Microbiology Ecology 14:233-242.
Erauso G., A.-L. Reysenbach, A. Godfroy, J.-R. Meunier, B. Crump, F. Partensky, J. A. Baross, V. Marteinsson, G. Barbier, N. R. Pace, and D. Prieur. 1993. Pyrococcus abyssi sp. nov., a new hyperthermophilic archaeon isolated from a deep-sea hydrothermal vent. Archives of Microbiology 160:338-349.
Baross, J. A., J. F. Holden, R. J. Pledger, B. C. Crump, and M. Summit. 1993. Submarine vent archaea: ecology and strategies for growth above 90°C. Proceedings of the International Summer Seminar on Deep-sea microorganisms. Japan Marine Science and Technology Center, Deep Star Group, JAMSTEC.

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