Source: http://juliendauguet.com/index.php?option=com_content&view=article&id=3&Itemid=3
Timestamp: 2019-04-19 17:05:30+00:00

Document:
J. Dauguet. "Computational approaches for the processing of cerebral histological images of small animals", Advances in Bio-Imaging: from Physics to Signal Understanding Issues, Springer Series Advances in Intelligent and Soft Computing, proceedings from the international seminar www.sfbi2011.org Volume 120, 2012, pp 173-190.
J. Dauguet. "Three-dimensional histological imaging of primate brain and correlation with in vivo medical device images", Revue de Primatologie, 2010, online article.
B. Romain, O. Lucidarme, J. Dauguet, S. Mulé, Y. Chenoune, N. Souedet, A. Guibal, T. Delzescaux, F. Frouin. “Registration and functional analysis of CT dynamic image sequences for the follow-up of patients with hepatic tumors undergoing antiangiogenic therapy”, IRBM, 2010, Oct; .31(5-6):263-270.
J. Lebenberg, A.-S. Herard, A. Dubois, J. Dauguet, V. Frouin, M. Dhenain, P. Hantraye, T. Delzescaux, “Validation of MRI-based 3D digital atlas registration with histological and autoradiographic volumes: An anatomofunctional transgenic mouse brain imaging study”, Neuroimage, 2010, Jul 1;51(3):1037-46.
J. Dauguet, F. Condé, P. Hantraye, V. Frouin, T. Delzescaux, “Generation of a 3D atlas of the nuclear division of the thalamus based on histological sections of primate: intra- and inter- subject atlas-to-MRI warping”, IRBM, 2009, Nov; 30(5-6):281-91.
J. Dauguet, S. Peled, V. Berezovskii, T. Delzescaux, S.K. Warfield, R. Born, C.-F. Westin, "Comparison of fiber tracts derived from In-Vivo DTI tractography with 3D histological neural tract tracer reconstruction on a macaque brain", NeuroImage, 2007, Aug 15;37(2):530-8.
J. Dauguet, T. Delzescaux, F. Condé, J.-F. Mangin, N. Ayache, P. Hantraye, V. Frouin, "Three-dimensional reconstruction of stained histological slices and 3D non-linear registration with in-vivo MRI for whole baboon brain“, Journal of Neuroscience Methods, 2007, Aug 15;164(1):191-204.
A. Dubois, J. Dauguet, Hérard A.-S, L. Besret, E. Duchesnay, V. Frouin, P. Hantraye, G. Bonvento, T. Delzescaux, "Automated three-dimensional analysis of histological and autoradiographic rat brain sections: application to an activation study", Journal of Cerebral Blood Flow and Metabolism, 2007 Mar; Oct;27(10):1742-55.
A.-S. Hérard, L. Besret, A. Dubois, J. Dauguet, T. Delzescaux, P. Hantraye, G. Bonvento, K. L. Moya, "siRNA targeted against amyloid precursor protein impairs synaptic activity in vivo", Neurobiology of Aging, 2006 Dec; 27(12): 1740-50.
J. Ros, L. Pellerin, F. Magara, J. Dauguet, F. Schenk, P. Magistretti, "Metabolic activation pattern of distinct hippocampal subregions during spatial learning and memory retrieval, Journal of Cerebral Blood Flow and Metabolism, 2005 Apr; 26(4): 468-477.
X. Drouot, S. Oshino, L. Besret, B. Jarraya, H. Kishima, P. Rémy, J. Dauguet, J. P. Lefaucheur, F. Dollé, F. Condé, M. Bottlaender, M. Peschanski, Y. Kéravel, P. Hantraye, S. Palfi, " Functional Recovery in a Primate Model of Parkinson's disease following motor cortex stimulation", Neuron, 2004 Dec 2; 44(5):769-78.
H. Kishima, T. Poyot, J. Bloch, J. Dauguet, F. Condé, F. Dollé, F. Hinnen, W. Pralong, S. Palfi, N. Déglon, P. Aebischer, P. Hantraye, « Encapsulated GDNF-Producing C2C12 Cells for Parkinson's Disease : a Pre-Clinical Study in Chronic MPTP-Treated Baboons », Neurobiology of Disease, 2004 Jul; 16(2):428-39.
J. Mahé, T. Vercauteren, B. Rosa, J. Dauguet “A Viterbi approach to topology inference for large scale endomicroscopy video mosaicing ”, communication in Proc. Of Medical Image Computing and Computer Assited Intervention (MICCAI); Nagoya, 2013.
J. Dauguet “Computational approaches for the processing of cerebral histological images of small animals”, Singapore French BioImaging Symposium SFBI'11, Singapore, Feb 2011.
J. Dauguet, A.-S. Hérard, J. Declerck, T. Delzescaux “Locally constrained cubic B-spline deformations to control volume variations”, IEEE International Symposium on Biomedical Imaging (ISBI), Boston, 2009.
J. Dauguet, S.K. Warfield, E. Bromfield, A. Golby, J.W. Lee “Comparison of the deformations of brain tissues caused by tumor for seizure vs non-seizure patients”, IEEE International Symposium on Biomedical Imaging (ISBI), Paris, 2008.
J. Dauguet, D. Bock, R.C. Reid, S.K. Warfield, "Alignment of Large Image Series using Cubic B-Splines Tesselation: Application to Transmission Eletron Microscopy Data", communication in Proc. Of Medical Image Computing and Computer Assited Intervention (MICCAI); 10 (Pt II):710-7, Brisbane, 2007.
F.J. Sanchez Castro, O. Clatz, J. Dauguet, N. Archip, J.-P. Thiran, S.K. Warfield, "Consistency of DT-MRI to Assess Quality of MRI Inter-Subject Registration", International Society for Magnetic Resonance in Medicine (ISMRM), Berlin, 2007.
F.J. Sanchez Castro, O. Clatz, J. Dauguet, N. Archip, J.-P. Thiran, S.K. Warfield, "Evaluation of brain image nonrigid registration algorithms based on log-euclidian MR-DTI consistency measures", IEEE International Symposium on Biomedical Imaging (ISBI), Washington DC, 2007.
J. Dauguet, S. Peled, V. Berezovskii, T. Delzescaux, S.K. Warfield, R. Born, C.-F. Westin, "3D histological reconstruction of fiber tracts and direct comparison with diffusion tensor MRI tractography", oral presentation in Proc. Of Medical Image Computing and Computer Assited Intervention (MICCAI); 9(Pt 1):109-16, Copenhagen, 2006.
J. Dauguet, A. Dubois, A.-S. Hérard, L. Besret, G. Bonvento, A. Syrota, T. Delzescaux, "An Automated and Robust Protocol to Reconstruct 3D Volume from Histological Sections: Application to an Activation Study in Rat Brain", communication in The Society of Nuclear Medicine (SNM), 52nd Annual Meeting, Toronto, 2005.
J. Dauguet, A. Dubois, A.-S. Hérard, L. Besret, G. Bonvento, P. Hantraye, T. Delzescaux, "Towards a Routine Analysis of Anatomical and Functional post mortem Slices in 3 Dimensions", communication in the XXIInd International Symposium on Cerebral Blood Flow, Metabolism, and Function (BRAIN) and VIIth International Conference on Quantification of Brain Function with PET (BRAIN-PET), Amsterdam, 2005.
J. Dauguet, J.-F. Mangin, T. Delzescaux, V. Frouin, "Robust Inter-slice Intensity Normalization using Histogram Scale Space Analysis", oral presentation in Proc. Of Medical Image Computing and Computer Assited Intervention (MICCAI), p. 242-249, Saint-Malo, 2004.
R. Maroy, G. Douaud, J. Dauguet, J. F. Mangin, P. Hantraye, "Striatum Parametrisation : a New Basis for the Study of Neuro-Degenerative Processes in Huntington's Disease, Human Brain Mapping (HBM), Budapest, 2004.
E. Brouillet, N. Bizat, F. Boyer, C. Escartin, J. Dauguet, X.-J. Li, M. Peschanski, P. Hantraye, N. Déglon, "Aging increases the formation of neuropil aggregates in the rat striatum infected with lentivirus encoding mutant huntingtin", Society for Neuroscience Annual Meeting (SFN), San Diego, 2004.
A. S. Hérard, L. Besret, J. Dauguet, T. Delzescaux, A. Dubois, P. Hantraye, K. Moya, G. Bonvento, "Decreased Metabolic Response to Visual Stimulation in the Rat Superior Colliculus after Local Knockdown of APP with siRNAs", Society for Neuroscience Annual Meeting (SFN), San Diego, 2004.
T. Delzescaux, J. Dauguet, F. Condé, R. Maroy, V. Frouin, "Using 3D Non Rigid FFD-Based Method to Register post mortem 3D Histological Data and in vivo MRI of a Baboon Brain", communication inProc. Of Medical Image Computing and Computer Assited Intervention (MICCAI), p. 965-966, Montréal, 2003.
J. Dauguet, V. Frouin, Y. Cointepas, D. Hervé, N. Ayache, P. Hantraye, "Robust Segmentation of the Thalamus using Kohonen algorithm from diffusion tensor images", oral presentation, International Society of Magnetic Resonance in Medicine (ISMRM), Toronto, 2002.
J. Dauguet, "L'imagerie post mortem tridimensionnelle cérébrale : constitution et apport pour l'analyse conjointe de données histologiques anatomo-fonctionnelles et la mise en correspondance avec l'imagerie in vivo", Ecole Centrale de Paris, 2005.
A. Dubois, J. Dauguet, and T. Delzescaux. Ex vivo and in vitro cross calibration methods. In Fabian Kiessling and Bernd J. Pichler, editors, Small Animal Imaging, pages 317–346. Springer Berlin Heidelberg, 2011.

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