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Timestamp: 2019-04-22 00:52:24+00:00

Document:
Rizzi, R., Cairo, M., Mäkinen, V., Tomescu, A. I. & Valenzuela, D., Feb 2019, In : IEEE/ACM Transactions on Computational Biology and Bioinformatics. 16, 1, p. 23-30 8 p.
Belazzougui, D., Gagie, T., Mäkinen, V., Previtali, M. & Puglisi, S. J., Dec 2018, In : International Journal of Foundations of Computer Science. 29, 8, p. 1279-1295 17 p.
Norri, T., Cazaux, B., Kosolobov, D. & Mäkinen, V., 2018, 18th International Workshop on Algorithms in Bioinformatics (WABI 2018). Parida, L. & Ukkonen, E. (eds.). Dagstuhl: Schloss Dagstuhl Leibniz Center for Informatics, p. 15:1-15:15 15 p. (Leibniz International Proceedings in Informatics (LIPIcs); vol. 113).
Katainen, R., Donner, I., Cajuso, T., Kaasinen, E., Palin, K., Mäkinen, V., Aaltonen, L. A. & Pitkänen, E., Nov 2018, In : Nature Protocols. 13, 11, p. 2580-2600 21 p.
Makinen, V. & Puglisi, S. J., Aug 2018, In : Theory of Computing Systems. 62, 6, p. 1349-1350 2 p.
Acosta, N. O., Mäkinen, V. & Tomescu, A. I., 7 Feb 2018, In : Algorithms for Molecular Biology. 13, 12 p., 3.
Valenzuela, D., Norri, T., Välimäki, N., Pitkänen, E. & Mäkinen, V., 9 May 2018, In : BMC Genomics. 19, 8 p., 87.
Mäkinen, V., Staneva, V., Tomescu, A. I., Valenzuela, D. & Wilzbach, S., 10 Jul 2017, In : Discrete Applied Mathematics. 225, p. 130-135 6 p.
Alanko, J., Cunial, F., Belazzougui, D. & Mäkinen, V., 14 Mar 2017, In : BMC Bioinformatics. 18, Suppl 3, 12 p., 59.
The Computational Pan-Genomics Consortium, Mäkinen, V. A. T. & Valenzuela, S. D. A., Jan 2018, In : Briefings in Bioinformatics. 19, 1, p. 118-135 18 p.
Belazzougui, D., Gagie, T., Mäkinen, V. & Previtali, M., 2016, String Processing and Information Retrieval: 23rd International Symposium, SPIRE 2016, Beppu, Japan, October 18-20, 2016, Proceedings. Springer, p. 145-152 8 p. (Lecture Notes in Computer Science; vol. 9954).
Rautiainen, M., Salmela, L. & Mäkinen, V., 2016, Algorithms for Computational Biology: Third International Conference, AlCoB 2016, Trujillo, Spain, June 21-22, 2016, Proceedings. Botón-Fernández, M., Martín-Vide, C., Santander-Jiménez, S. & Vega-Rodríguez, M. A. (eds.). Springer International Publishing , p. 158-170 13 p. (Lecture Notes in Computer Science; vol. 9702).
Belazzougui, D., Gagie, T., Mäkinen, V. A. T., Previtali, M. & Puglisi, S. J., 2016, Theoretical informatics: LATIN 2016: 12th Latin American Symposium, Ensenada, Mexico, April 11-15, 2016 : proceedings. Kranakis, E., Navarro, G. & Chávez, E. (eds.). Berlin: Springer, p. 164-178 9 p. (Lecture Notes in Computer Science; vol. 9644).
Kuosmanen, A. E., Sobih, A. A. M., Rizzi, R., Mäkinen, V. A. T. & Tomescu, A. I., 2016, Proceedings of the 9th International Joint Conference on Biomedical Engineering Systems and Technologies. Gilbert, J., Azhari, H., Ali, H., Quintão, C., Sliwa, J., Ruiz, C., Fred, A. & Gamboa, H. (eds.). SCITEPRESS Science And Technology Publications , p. 272-277 6 p.
Sobih, A. A. M., Tomescu, A. I. & Mäkinen, V. A. T., 8 Apr 2016, Research in Computational Molecular Biology: 20th Annual Conference, RECOMB 2016, Santa Monica, CA, USA, April 17-21, 2016, Proceedings. Singh, M. (ed.). Cham: Springer International Publishing AG, p. 111-121 11 p. (Lecture Notes in Bioinformatics (Subseries of Lecture Notes in Computer Science); vol. 9649).
Tomescu, A. I., Gagie, T., Popa, A., Rizzi, R., Kuosmanen, A. E. & Mäkinen, V. A. T., Dec 2015, In : IEEE/ACM Transactions on Computational Biology and Bioinformatics. 12, 6, p. 1345-1354 10 p.
Wittler, R., Marschall, T., Schönhuth, A. & Mäkinen, V., Sep 2015, In : Bioinformatics. 31, 18, p. 2947-2954 8 p.
Belazzougui, D., Mäkinen, V. A. T. & Valenzuela, S. D. A., 2015, Encyclopedia of Algorithms. Kao, M-Y. (ed.). New York: Springer, 6 p.
Mäkinen, V. A. T., Belazzougui, D., Cunial, F. & Tomescu, A. I., May 2015, Cambrigde University Press. 391 p.
Mäkinen, V. & Valenzuela, D., 2015, Bioinformatics Research and Applications: 11th International Symposium, ISBRA 2015, Norfolk, USA, June 6-9, 2015, Proceedings . Harrison, R., Li, Y. & Măndoiu, I. (eds.). Cham: Springer International Publishing AG, p. 235-246 12 p. (Lecture notes in computer science; vol. 9096)(LNCS sublibrary. SL 8, Bioinformatics).
Arroyuelo, D., Claude, F., Maneth, S., Mäkinen, V., Navarro, G., Nguyen, K., Sirén, J. & Välimäki, N., Mar 2015, In : Software: Practice & Experience. 45, 3, p. 399-434 36 p.
van Rens, K. E., Mäkinen, V. & Tomescu, A. I., 1 Apr 2015, In : Bioinformatics. 31, 7, p. 1133-1135 3 p.
Salmela, L., Sahlin, K., Mäkinen, V. & Tomescu, A. I., 2015, Research in Computational Molecular Biology : 19th Annual International Conference, RECOMB 2015, Warsaw, Poland, April 12-15, 2015, Proceedings . Przytycka, T. M. (ed.). Cham: Springer International Publishing AG, p. 281-292 12 p. (Lecture Notes in Bioinformatics; vol. 9029).
Sirén, J., Välimäki, N. & Mäkinen, V., 2014, In : IEEE/ACM Transactions on Computational Biology and Bioinformatics. 11, 2, p. 375-388 14 p.
Mäkinen, V. & Valenzuela, D., 2014, In : BMC Genomics. 15, Suppl 6, p. S15 9 p.
Mäkinen, V. & Navarro, G., 2006, In : Lecture Notes in Computer Science. 4009, p. 306-317 12 p.
Gog, S., Karhu, K., Kärkkäinen, J., Mäkinen, V. & Välimäki, N., 2014, In : Journal of Discrete Algorithms. 24, p. 26-39 14 p.
Tomescu, A. I., Kuosmanen, A., Rizzi, R. & Mäkinen, V., 2013, Algorithms in Bioinformatics: 13th International Workshop, WABI 2013, Sophia Antipolis, France, September 2-4, 2013. Proceedings. Darling, A. & Stoye, J. (eds.). Springer-Verlag, p. 85-98 (Lecture Notes in Computer Science; no. 8126).
Belazzougui, D., Cunial, F., Kärkkäinen, J. & Mäkinen, V., 2013, Algorithms – ESA 2013: 21st Annual European Symposium, Sophia Antipolis, France, September 2-4, 2013. Proceedings. Bodlaender, H. L. & Italiano, G. F. (eds.). Springer-Verlag, p. 133-144 (Lecture Notes in Computer Science; vol. 8125).
Mäkinen, V. & Rahkola, J., Oct 2013, In : BMC Bioinformatics. 14, (Suppl 15):S13, 6 p.
Tomescu, A. I., Kuosmanen, A., Rizzi, R. & Mäkinen, V., 10 Apr 2013, In : BMC Bioinformatics. 14, (Suppl 5):S15, 10 p.
Heinonen, M., Välimäki, N., Mäkinen, V. & Rousu, J., 2012, 3rd International Conference on Bioinformatics Models, Methods and Algorithms, 1-4 Feb 2012, Algarve, Portugal.: Proceedings. 6 p.
Kashif, M., Pietila, S., Artola, K., Jones, R. A. C., Tugume, A. K., Makinen, V. & Valkonen, J. P. T., Oct 2012, In : Plant Disease. 96, 10, p. 1430-1437 8 p.
Mäkinen, V., Salmela, L. & Ylinen, J., 3 Oct 2012, In : BMC Bioinformatics. 13, p. 255 5 p.
Välimäki, N., Ladra, S. & Mäkinen, V., 2012, In : Information and Computation. 213, p. 49-58 10 p.
Gog, S., Karhu, K., Kärkkäinen, J., Mäkinen, V. & Välimäki, N., 2012, Computing and Combinatorics: 18th Annual International Conference, COCOON 2012, Sydney, Australia, August 20-22, 2012. Proceedings. Gudmundsson, J., Mestre, J. & Viglas, T. (eds.). Springer-Verlag, p. 384-395 (Lecture Notes in Computer Science; vol. 7434).
Fischer, J., Gagie, T., Kopelowitz, T., Lewenstein, M., Mäkinen, V., Salmela, L. & Välimäki, N., 2012, LATIN 2012: Theoretical Informatics: 10th Latin American Symposium, Arequipa, Peru, April 16-20, 2012. Proceedings. Fernández-Baca, D. (ed.). Springer-Verlag, p. 327-337 (Lecture Notes in Computer Science; vol. 7256).
Gagie, T., Karhu, K., Kärkkäinen, J., Mäkinen, V., Salmela, L. & Tarhio, J., 2012, LATIN 2012: Theoretical Informatics: 10th Latin American Symposium, Arequipa, Peru, April 16-20, 2012. Proceedings. Springer-Verlag, p. 399-407 10 p. (Lecture Notes in Computer Science; vol. 7256).
Mäkinen, V., Jul 2011, In : Tietojenkäsittelytiede. 32, p. 10-15 6 p.
Salmela, L., Mäkinen, V., Välimäki, N., Ylinen, J. & Ukkonen, E., 2011, In : Bioinformatics. 27, 23, p. 3259-3265 7 p.
Kaski, P., Mäkinen, V. & Östergård, P. R. J., 2011, In : Graphs and Combinatorics. 27, 4, p. 539-546 8 p.
Angelov, S., Inenaga, S., Kivioja, T. & Mäkinen, V., 2011, In : Journal of Discrete Algorithms. 9, 2, p. 153-165 13 p.
Välimäki, N., Gerlach, W., Dixit, K. & Mäkinen, V., 2007, Experimental Algorithms. Springer-Verlag, p. 217-228 12 p. (LNCS; vol. 4525).
Mäkinen, V., 2000, Proceedings of the 11th Annual Symposium on Combinatorial Pattern Matching (CPM 2000). Springer-Verlag, p. 305-319 (LNCS; vol. 1848).
Mäkinen, V., Navarro, G. & Ukkonen, E., 2001, Proceedings of the 12th Annual Symposium on Combinatorial Pattern Matching (CPM 2001). Springer-Verlag, p. 31-49 (LNCS; vol. 2089).
Mäkinen, V., 2001, Proceedings of the Third International Workshop on Algorithm Engineering and Experimentation (ALENEX 2001). Springer-Verlag, p. 189-201 (LNCS; vol. 2153).
Mäkinen, V. & Ukkonen, E., 2002, Proceedings of the 13th Annual Symposium on Combinatorial Pattern Matching (CPM 2002). Springer-Verlag, p. 115-132 (LNCS; vol. 2373).
Ukkonen, E., Lemström, K. & Mäkinen, V., 2003, Computer Science in Perspective, Essays Dedicated to Thomas Ottmann. Springer-Verlag, p. 330-342 13 p. (LNCS; vol. 2598).
Mäkinen, V., Navarro, G. & Ukkonen, E., 2003, Proceedings of the 20th Annual Symposium on Theoretical Aspects of Computer Science (STACS 2003): Proceedings of the 20th Annual Symposium on Theoretical Aspects of Computer Science (STACS 2003). Springer-Verlag, p. 191-202 (LNCS; vol. 2607).
Lemström, K. & Mäkinen, V., 2003, Unknown host publication. Springer-Verlag, p. 237-253 (LNCS; vol. 2676).
Mäkinen, V. & Navarro, G., 2005, Proceedings of the 16th Annual Symposium on Combinatorial Pattern Matching (CPM 2005). Springer-Verlag, p. 45-56 (LNCS; vol. 3537).
Inenaga, S., Kivioja, T. & Mäkinen, V., 2004, Proceedings of the 4th International Workshop on Algorithms in Bioinformatics (WABI 2004). Springer-Verlag, p. 463-474 (LNCS; vol. 3240).
Grabowski, S., Mäkinen, V. & Navarro, G., 2004, Proceedings of the 11th International Conference on String Processing and Information Retrieval (SPIRE 2004). Springer-Verlag, p. 210-211 (LNCS; vol. 3246).
Ferragina, P., Manzini, G., Mäkinen, V. & Navarro, G., 2004, Proceedings of the 11th International Conference on String Processing and Information Retrieval (SPIRE 2004). Springer-Verlag, p. 150-160 (LNCS; vol. 3246).
Fredriksson, K., Mäkinen, V. & Navarro, G., 2004, Proceedings of the 6th Latin American Symposium on Theoretical Informatics (LATIN 2004). Springer-Verlag, p. 39-48 (LNCS; vol. 2976).
Mäkinen, V., Navarro, G. & Sadakane, K., 2004, Proceedings of the 15th International Symposium on Algorithms and Computation (ISAAC 2004). Springer-Verlag, p. 681-692 (LNCS; vol. 3341).
Mäkinen, V. & Navarro, G., 2004, Proceedings of the 15th Annual Symposium on Combinatorial Pattern Matching (CPM 2004). Springer-Verlag, p. 420-433 (LNCS; vol. 3109).
Sirén, J., Välimäki, N. & Mäkinen, V., 2011, Algorithms in Bioinformatics: 11th International Workshop, WABI 2011. Przytycka, T. M. & Sagot, M-F. (eds.). Springer, p. 270-281 (Lecture Notes in Bioinformatics; vol. 6833).
Mäkinen, V. & Navarro, G., 2007, String Processing and Information Retrieval. Springer, p. 229-241 13 p. (Lecture notes in computer science; vol. 4726).
Välimäki, N., Mäkinen, V., Gerlach, W. & Dixit, K., 2009, In : ACM Journal of Experimental Algorithmics. 14, 4.2, p. 4.2:1-4.2:23 23 p.
Sirén, J., Välimäki, N., Mäkinen, V. & Navarro, G., 2008, String Processing and Information Retrieval: 15th International Symposium, SPIRE 2008. Amir, A., Turpin, A. & Moffat, A. (eds.). Springer, p. 164-175 12 p. (Lecture Notes in Computer Science; no. 5280).
Mäkinen, V., Navarro, G., Sirén, J. & Välimäki, N., 2009, Research in Computational Molecular Biology: 13th Annual International Conference, RECOMB 2009. Batzoglou, S. (ed.). Springer, p. 121-137 17 p. (Lecture Notes in Computer Science; no. 5541).
Välimäki, N., Ladra, S. & Mäkinen, V., 2010, CPM 2010: Proceedings of the 21st Annual Symposium on Combinatorial Pattern Matching . Germany: Springer-Verlag, Vol. 21. p. 76-87 (Lecture Notes in Computer Science; vol. 6129).
Mäkinen, V., Navarro, G., Sirén, J. & Välimäki, N., 2010, In : Journal of Computational Biology. 17, 3, p. 281-308 28 p.
Böcker, S. & Mäkinen, V., 2005, Proceedings of the 21st European Workshop on Computational Geometry. p. 183–186 4 p.
González, R., Grabowski, S., Mäkinen, V. & Navarro, G., 2005, Poster Proceedings of 4th International Workshop on Efficient and Experimental Algorithms .
Mäkinen, V., Välimäki, N., Laaksonen, A. & Katainen, R., 2010, Algorithms and applications: Essays dedicated to Esko Ukkonen on the occasion of his 60th birthday. Elomaa, T., Mannila, H. & Orponen, P. (eds.). Springer-Verlag, 14 p. (Lecture Notes in Computer Science; vol. 2010, no. 6060).
Arroyuelo, D., Claude, F., Maneth, S., Mäkinen, V., Navarro, G., Nguyen, K., Sirén, J. & Välimäki, N., 2010, ICDE 2010: 26th IEEE International Conference on Data Engineering. IEEE Computer Society, p. 417-428 12 p.
Nicolas, F., Mäkinen, V. & Ukkonen, E., 2009, In : Theoretical Computer Science. 410 (2009), p. 2999-3005 7 p.
Fischer, J., Mäkinen, V. & Navarro, G., 2009, In : Theoretical Computer Science. 410 (2009), p. 5354-5364 11 p.
Mäkinen, V., Navarro, G., Siren, J. & Välimäki, N., 2008, Dagstuhl seminar proceedings. 14 p. (Dagstuhl seminar proceedings; no. 08261).
Bonifati, A., Leighton, G., Mäkinen, V., Maneth, S., Navarro, G. & Pugliese, A., 2008, Dagstuhl seminar proceedings. Böttcher, S., Lohrey, M., Maneth, S. & Rytter, W. (eds.). 17 p. (Dagstuhl Seminar Proceedings; no. 08261).
Mäkinen, V. & Navarro, G., 2008, Data Compression Conference: DCC 2008. p. 422-431 10 p.
Fischer, J., Mäkinen, V. & Välimäki, N., 2008, Eighth IEEE International Conference on Data Mining, ICDM 2008, 15-19 December, 2008, Pisa, Italy: IEEE Computer Society 2008. p. 193-202 10 p.
Mäkinen, V. & Ukkonen, E., 2008, Encyclopedia of Algorithms. Boston, MA: Springer-Verlag, p. 657-660 4 p.
Mäkinen, V. & Navarro, G., 2008, Encyclopedia of Algorithms. Boston, MA: Springer-Verlag, p. 176-178 3 p.
Mäkinen, V., 2008, Encyclopedia of Algorithms. Boston, MA: Springer-Verlag, p. 174-176 3 p.
Mäkinen, V., 14 Dec 2008, In : Luova : tiedettä & teknologiaa.
Böcker, S. & Mäkinen, V., 2008, In : IEEE/ACM Transactions on Computational Biology and Bioinformatics. 5, 1, p. 91-100 10 p.
Mäkinen, V. & Navarro, G., 2008, In : ACM transactions on algorithms.. 4, 3, p. art. 32 38 p.
Fischer, J., Mäkinen, V. & Navarro, G., 2008, Combinatorial pattern matching. p. 152-165 14 p.
Välimäki, N. & Mäkinen, V., 2007, Combinatorial pattern matching. p. 205-215 11 p.
Välimäki, N., Gerlach, W., Dixit, K. & Mäkinen, V., 2007, In : Bioinformatics. 23, 5, p. 629-630 2 p.
Fredriksson, K., Mäkinen, V. & Navarro, G., 2007, In : Information and Computation. 205, 7, p. 1096-1113 18 p.
Mäkinen, V., 2007, In : Biomolecular engineering. 24, 3, p. 337-342 6 p.
Mäkinen, V. & Navarro, G., 2007, In : Theoretical Computer Science. 387, 3, p. 332-347 16 p.
Navarro, G. & Mäkinen, V., 2006, Santiago: University of Chile, Department of Computer Science. 66 p.
Mäkinen, V., 2006, In : Tietojenkäsittelytiede. 2006, 25, p. 28-37 10 p.
Mäkinen, V. & Navarro, G., 2006, LATIN 2006: THEORETICAL INFORMATICS. p. 703-714 12 p. (Lecture Notes in Computer Science; vol. 3887).
Mäkinen, V. & Navarro, G., 2006, Combinatorial pattern matching. p. 306-317 12 p.
Grabowski, S., Navarro, G., Przywarski, R., Salinger, A. & Mäkinen, V., 2006, In : International Journal of Foundations of Computer Science. 17, 6, p. 1365-1384 20 p.
Fredriksson, K., Mäkinen, V. & Navarro, G., 2006, In : International Journal of Foundations of Computer Science. 17, 6, p. 1345-1364 20 p.
Lemström, K. & Mäkinen, V., 2005, In : Journal of Discrete Algorithms. 3, 2-4, p. 248-266 19 p.
Mäkinen, V., Navarro, G. & Ukkonen, E., 2005, In : Journal of Algorithms. 56, p. 124-153 30 p.
Mäkinen, V. & Navarro, G., 2005, In : Nordic Journal of Computing. 12, 1, p. 44-66 23 p.

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