Source: https://repository.rothamsted.ac.uk/item/88qyz/improving-wheat-model-accuracy-and-suitability-for-regional-impact-assessment-final-report-of-the-impetus-european-commission-project-env4-ct97-0496
Timestamp: 2019-04-25 05:53:02+00:00

Document:
Mitchell, R. A. C. and Semenov, M. A.
Hyde, L. S., Pellny, T. K., Freeman, J., Michaelson, L. V., Simister, R., McQueen-Mason, S. J. and Mitchell, R. A. C. 2018. Response of cell wall composition and RNA-seq transcriptome to methyl-jasmonate in Brachypodium distachyon callus . Planta.
De Souza, W. R., Martins, P. K., Freeman, J., Pellny, T. K., Michaelson, L. V., Sampaio, B. L., Vinecky, F., Ribeiro, A. P., Da Cunha, B. A. D. B., Kobayashi, A. K., De Oliveira, P. A., Campanha, R. B., Pacheco, T. F., Martarello, D. C. I., Marchiosi, R., Ferrarese-Filho, O., Dos Santos, W. D., Tramontina, R., Squina, F. M., Centeno, D. C., Gaspar, M., Braga, M. R., Tine, M. A. S., Ralph, J., Mitchell, R. A. C. and Molinari, H. B. C. 2018. Suppression of a single BAHD gene in Setaria viridis causes large, stable decreases in cell wall feruloylation and increases biomass digestibility. New Phytologist. 218 (1), pp. 81-93.
Wan, Y., King, R., Mitchell, R. A. C., Hassani-Pak, K. and Hawkesford, M. J. 2017. Spatiotemporal expression patterns of wheat amino acid transporters reveal their putative roles in nitrogen transport and responses to abiotic stress. Scientific Reports. 7 (1), p. 5461.
Freeman, J., Ward, J. L., Kosik, O., Lovegrove, A., Wilkinson, M. D., Shewry, P. R. and Mitchell, R. A. C. 2017. Feruloylation and structure of arabinoxylan in wheat endosperm cell walls from RNAi lines with suppression of genes responsible for backbone synthesis and decoration. Plant Biotechnology Journal. 15 (11).
Freeman, J., Lovegrove, A., Wilkinson, M. D., Saulnier, L., Shewry, P. R. and Mitchell, R. A. C. 2016. Effect of suppression of arabinoxylan synthetic genes in wheat endosperm on chain length of arabinoxylan and extract viscosity. Plant Biotechnology Journal. 14 (1), pp. 109-116.
Gritsch, C., Wan, Y., Mitchell, R. A. C., Shewry, P. R., Hanley, S. J. and Karp, A. 2015. G-fibre cell wall development in willow stems during tension wood induction. Journal of Experimental Botany. 66 (20), pp. 6447-6459.
Shewry, P. R., Reynolds, S., Pellny, T. K., Freeman, J., Wilkinson, M. D., Kosik, O., Ulker, M., Wingen, L., Orford, S., Griffiths, S., Mitchell, R. A. C. and Lovegrove, A. 2015. Improving wheat as a source of dietary fibre for human health. Cambridge University Press (CUP) Cambridge.
Matias De Oliveira, D., Finger-Teixeira, A., Rodrigues Mota, T., Salvador, V. H., Moreira-Vilar, F., Correa Molinari, H. B., Mitchell, R. A. C., Marchiosi, R., Ferrarese-Filho, O. and Dantas Dos Santos, W. 2015. Ferulic acid: a key component in grass lignocellulose recalcitrance to hydrolysis. Plant Biotechnology Journal. 13 (9), pp. 1224-1232.
Habash, D. Z., Baudo, M., Hindle, M. M., Powers, S. J., Defoin-Platel, M., Mitchell, R. A. C., Saqi, M., Rawlings, C. J., Latiri, K., Araus, J. L., Abdulkader, A., Tuberosa, R., Lawlor, D. W. and Nachit, M. M. 2014. Systems responses to progressive water stress in durum wheat. PLOS ONE. 9, p. e108431.
Wan, Y., Gritsch, C., Tryfona, T., Ray, M. J., Andongabo, A. E., Hassani-Pak, K., Jones, H. D., Dupree, P., Karp, A., Shewry, P. R. and Mitchell, R. A. C. 2014. Secondary cell wall composition and candidate gene expression in developing willow (Salix purpurea) stems. Planta. 239, pp. 1041-1053.
Lovegrove, A., Wilkinson, M. D., Freeman, J., Pellny, T. K., Tosi, P., Saulnier, L., Shewry, P. R. and Mitchell, R. A. C. 2013. RNA interference suppression of genes in glycosyl transferase families 43 and 47 in wheat starchy endosperm causes large decreases in arabinoxylan content. Plant Physiology. 163, pp. 95-107.
Lunasin in cereal seeds: what is the origin?
Mitchell, R. A. C., Lovegrove, A. and Shewry, P. R. 2013. Lunasin in cereal seeds: what is the origin? Journal of Cereal Science. 57, pp. 267-269.
Molinari, H. B. C., Pellny, T. K., Freeman, J., Shewry, P. R. and Mitchell, R. A. C. 2013. Grass cell wall feruloylation: distribution of bound ferulate and candidate gene expression in Brachypodium distachyon. Frontiers in Plant Science. 4, p. 50 (10pp).
Shewry, P. R., Mitchell, R. A. C., Tosi, P., Wan, Y., Toscano-Underwood, C., Lovegrove, A., Freeman, J., Toole, G. A., Mills, E. N. C. and Ward, J. L. 2012. An integrated study of grain development of wheat (cv. Hereward). Journal of Cereal Science. 56, pp. 21-30.
Pellny, T. K., Lovegrove, A., Freeman, J., Tosi, P., Love, C. G., Knox, J. P., Shewry, P. R. and Mitchell, R. A. C. 2012. Cell walls of developing wheat starchy endosperm: comparison of composition and RNA-Seq transcriptome. Plant Physiology. 158, pp. 612-627.
Anders, N., Wilkinson, M. D., Lovegrove, A., Freeman, J., Tryfona, T., Pellny, T. K., Weimar, T., Mortimer, J. C., Stott, K., Baker, J. M., Defoin-Platel, M., Shewry, P. R., Dupree, P. and Mitchell, R. A. C. 2012. Glycosyl transferases in family 61 mediate arabinofuranosyl transfer onto xylan in grasses. Proceedings of the National Academy of Sciences of the United States of America. 109 (3), pp. 989-993.
Martinez-Barajas, E., Delatte, T., Schluepmann, H., De Jong, G. J., Somsen, G. W., Nunes, C., Primavesi, L. F., Coello, P., Mitchell, R. A. C. and Paul, M. J. 2011. Wheat grain development is characterized by remarkable trehalose 6-phosphate accumulation pregrain filling: tissue distribution and relationship to SNF1-related protein kinase1 activity. Plant Physiology. 156, pp. 373-381.
Toole, G. A., Le Gall, G., Colquhoun, I. J., Nemeth, C., Saulnier, L., Lovegrove, A., Pellny, T. K., Wilkinson, M. D., Freeman, J., Mitchell, R. A. C., Mills, E. N. C. and Shewry, P. R. 2010. Temporal and spatial changes in cell wall composition in developing grains of wheat cv. Hereward. Planta. 232, pp. 677-689.
Nemeth, C., Freeman, J., Jones, H. D., Sparks, C. A., Pellny, T. K., Wilkinson, M. D., Dunwell, J., Andersson, A. A. M., Aman, P., Guillon, F., Saulnier, L., Mitchell, R. A. C. and Shewry, P. R. 2010. Down-regulation of the CSLF6 gene results in decreased (1,3;1,4)-beta-D-glucan in endosperm of wheat. Plant Physiology. 152, pp. 1209-1218.
Shewry, P. R., Toscano-Underwood, C., Wan, Y., Lovegrove, A., Bhandari, D., Toole, G., Mills, E. N. C., Denyer, K. and Mitchell, R. A. C. 2009. Storage product synthesis and accumulation in developing grains of wheat. Journal of Cereal Science. 50, pp. 106-112.
Zhang, Y., Primavesi, L. F., Jhurreea, D., Andralojc, P. J., Mitchell, R. A. C., Powers, S. J., Schluepmann, H., Delatte, T., Wingler, A. and Paul, M. J. 2009. Inhibition of SNF1-related protein kinase1 activity and regulation of metabolic pathways by trehalose-6-phosphate. Plant Physiology. 149 (4), pp. 1860-1871.
Wan, Y., Toscano-Underwood, C., Toole, G., Skeggs, P., Zhu, T., Leverington, M., Griffiths, S., Wheeler, T., Gooding, M., Poole, R., Edwards, K. J., Gezan, S. A., Welham, S. J., Snape, J., Mills, E. N. C., Mitchell, R. A. C. and Shewry, P. R. 2009. A novel transcriptomic approach to identify candidate genes for grain quality traits in wheat. Plant Biotechnology Journal. 7 (5), pp. 401-410.
Wilkinson, M. D., Wan, Y., Tosi, P., Leverington, M., Snape, J., Mitchell, R. A. C. and Shewry, P. R. 2008. Identification and genetic mapping of variant forms of puroindoline b expressed in developing wheat grain. Journal of Cereal Science. 48, pp. 722-728.
Wan, Y., Poole, R. L., Huttly, A. K., Toscano-Underwood, C., Feeney, K., Welham, S. J., Gooding, M. J., Mills, C., Edwards, K. J., Shewry, P. R. and Mitchell, R. A. C. 2008. Transcriptome analysis of grain development in hexaploid wheat. BMC Genomics. 9, p. 121 (16pp).
Wan, Y., Mitchell, R. A. C., Leverington, M., Griffiths, S., Snape, J., Wheeler, T., Gooding, M., Poole, R., Edwards, K., Mills, C., Skeggs, P., Gezan, S., Welham, S. J., Shenton, C., Zhu, T. and Shewry, P. R. 2007. Transcriptome profiling of wheat genotypes differing in bread making quality under different environments. Abstracts 4th UK Small Grain Cereals Genetic and Genomics Workshop: From Genes to Traits, Cambridge, 14-16 March 2007 .
Mitchell, R. A. C., Castells-Brooke, N. I. D., Taubert, J., Verrier, P. J., Leader, D. J. and Rawlings, C. J. 2007. Wheat Estimated Transcript Server (WhETS): a tool to provide best estimate of hexaploid wheat transcript sequence. Nucleic Acids Research. 35(Web Server issue), pp. W148-W151.
Mitchell, R. A. C., Dupree, P. and Shewry, P. R. 2007. A novel bioinformatics approach identifies candidate genes for the synthesis and feruloylation of arabinoxylan. Plant Physiology. 144 (May), pp. 43-53.
Kan, Y., Wan, Y., Beaudoin, F., Leader, D. J., Edwards, K., Poole, R., Wang, D., Mitchell, R. A. C. and Shewry, P. R. 2006. Transcriptome analysis reveals differentially expressed storage protein transcripts in seeds of Aegilops and wheat. Journal of Cereal Science. 44, pp. 75-85.
Galmes, J., Flexas, J., Keys, A. J., Cifre, J., Mitchell, R. A. C., Madgwick, P. J., Haslam, R. P., Medrano, H. and Parry, M. A. J. 2005. Rubisco specificity factor tends to be larger in plant species from drier habitats and in species with persistent leaves. Plant, Cell & Environment. 28 (5), pp. 571-579.
Koehler, J., Rawlings, C. J., Verrier, P. J., Mitchell, R. A. C., Skusa, A., Ruegg, A. and Philippi, S. 2004. Linking experimental results, biological networks and sequence analysis methods using Ontologies and Generalised Data Structures. In Silico Biology. 5 (1), pp. 33-44.
Mitchell, R. A. C., Joyce, P. A., Rong, H., Evans, V. J., Madgwick, P. J. and Parry, M. A. J. 2004. Loss of decreased-rubisco phenotype between generations of wheat transformed with antisense and sense rbc S. Annals of Applied Biology. 145 (2), pp. 209-216.
Galmes, J., Flexas, J., Keys, A. J., Cifre, J., Mitchell, R. A. C., Madgwick, P. J., Haslam, R. P., Medrano, H. and Parry, M. A. J. 2004. Limonium gibertii mRNA for ribulose 1,5 bisphosphate carboxylase/oxygenase large subunit (rbcL gene).
Galmes, J., Flexas, J., Keys, A. J., Cifre, J., Mitchell, R. A. C., Madgwick, P. J., Haslam, R. P., Medrano, H. and Parry, M. A. J. 2004. Limonium gibertii partial mRNA for ribulose 1,5 bisphosphate carboxylase/oxygenase small subunit (rbcS2 gene).
Galmes, J., Flexas, J., Keys, A. J., Cifre, J., Mitchell, R. A. C., Madgwick, P. J., Haslam, R. P., Medrano, H. and Parry, M. A. J. 2004. Limonium gibertii partial mRNA for ribulose 1,5 bisphosphate carboxylase/oxygenase small subunit (rbcS1 gene).
Mitchell, R. A. C. 2003. Tylosema esculentum rbcL gene for ribulose 1,5 bisphosphate carboxylase large subunit.
Mitchell, R. A. C., Keys, A. J., Gong, Y-H. and Lawlor, D. W. 2003. Photosynthetic nitrogen and water-use efficiency of Marama bean, Tylosema esculentum , an African legume.
Parry, M. A. J., Andralojc, P. J., Mitchell, R. A. C., Madgwick, P. J. and Keys, A. J. 2003. Manipulation of Rubisco: the amount, activity, function and regulation. Journal of Experimental Botany. 54 (386), pp. 1321-1333.
Richter, G. M., Jaggard, K. W. and Mitchell, R. A. C. 2001. Modelling radiation interception and radiation use efficiency for sugar beet under variable climatic stress. Agricultural and Forest Meteorology. 109 (1), pp. 13-25.
Mitchell, R. A. C., Mitchell, V. J. and Lawlor, D. W. 2001. Response of wheat canopy CO2 and water gas-exchange to soil water content under ambient and elevated CO2. Global Change Biology. 7 (5), pp. 599-611.
Richter, G. M., Mitchell, R. A. C. and Werker, A. R. 2000. Modelling climate impacts for sugar beet production in Europe - radiation interception and radiation use efficiency. Proceedings of the Thirty-second Meeting of the Agricultural Research Modellers’ Group, London, 2000.
Is there scope for improving balance between RuBP-regeneration and carboxylation capacities in wheat at elevated CO2?
Mitchell, R. A. C., Theobald, J. C., Parry, M. A. J. and Lawlor, D. W. 2000. Is there scope for improving balance between RuBP-regeneration and carboxylation capacities in wheat at elevated CO2? Journal of Experimental Botany. 51, pp. 391-397.
Landau, S., Mitchell, R. A. C., Barnett, V., Colls, J. J., Craigon, J. and Payne, R. W. 2000. A parsimonious, multiple-regression model of wheat yield response to environment. Agricultural and Forest Meteorology. 101 (2-3), pp. 151-166.
Is there scope for improving adaptation of photosynthesis of crop plants to elevated CO2?
Mitchell, R. A. C. 1999. Is there scope for improving adaptation of photosynthesis of crop plants to elevated CO2? Oxford University Press (OUP) Oxford.
Mitchell, R. A. C., Black, C. R., Burkart, S., Burke, J. I., Donnelly, A., De Temmerman, L., Fangmeier, A., Mulholland, B. J., Theobald, J. C. and Van Oijen, M. 1999. Photosynthetic responses in spring wheat grown under elevated CO2 concentrations and stress conditions in the European, multiple-site experiment 'ESPACE-wheat'. European Journal of Agronomy. 10, pp. 205-214.
Fangmeier, A., De Temmerman, L., Mortensen, L., Kemp, K., Burke, J., Mitchell, R. A. C., Van Oijen, M. and Weigel, H-J. 1999. Effects on nutrients and on grain quality in spring wheat crops grown under elevated CO2 concentrations and stress conditions in the European, multiple-site experiment 'ESPACE-wheat'. European Journal of Agronomy. 10, pp. 215-229.
Response to "Comments on 'Testing winter wheat simulation models predictions against observed UK grain yields by Landau et al [Agric. For. Meteorol. 89 (1998) 85-89]' by Jamieson et al. [Agric. For. Meteorol., this issue]"
Landau, S., Mitchell, R. A. C., Barnett, V., Colls, J. J., Craigon, J. and Payne, R. W. 1999. Response to "Comments on 'Testing winter wheat simulation models predictions against observed UK grain yields by Landau et al [Agric. For. Meteorol. 89 (1998) 85-89]' by Jamieson et al. [Agric. For. Meteorol., this issue]". Agricultural and Forest Meteorology. 96 (1-3), pp. 163-164.
Theobald, J. C., Mitchell, R. A. C., Parry, M. A. J. and Lawlor, D. W. 1998. Estimating the excess investment in ribulose-1,5-bisphosphate carboxylase/oxygenase in leaves of spring wheat grown under elevated CO2. Plant Physiology. 118, pp. 945-955.
Demmers-Derks, H., Mitchell, R. A. C., Mitchell, V. J. and Lawlor, D. W. 1998. Response of sugar beet (Beta vulgaris L.) yield and biochemical composition to elevated CO2 and temperature at two nitrogen applications. Plant, Cell & Environment. 21 (8), pp. 829-836.
Landau, S., Mitchell, R. A. C., Barnett, V., Colls, J. J., Craigon, J., Moore, K. L. and Payne, R. W. 1998. Testing winter wheat models' predictions against observed UK grain yields. Agricultural and Forest Meteorology. 89 (2), pp. 85-99.
Mitchell, R. A. C., Gibbard, C. L., Mitchell, V. J. and Lawlor, D. W. 1996. Effects of shading in different developmental phases on biomass and grain yield of winter wheat at ambient and elevated CO2. Plant, Cell & Environment. 19 (5), pp. 615-621.
Lawlor, D. W. and Mitchell, R. A. C. 1995. Yield experiments allow scientists to read the tea-leaves.
Lawlor, D. W., Delgado, E., Driscoll, S. P., Mitchell, V. J., Mitchell, R. A. C. and Parry, M. A. J. 1995. Photosynthetic acclimation of winter wheat to elevated CO2 and temperature.
Demmers-Derks, H., Mitchell, R. A. C., Michell, V. J., Driscoll, S. P., Gibbard, C. and Lawlor, D. W. 1995. Sugar beet under climatic change: photosynthesis and productivity. Oxford University Press (OUP) Oxford.
Bainbridge, G., Madgwick, P., Parmar, S., Mitchell, R. A. C., Paul, M. J., Pitts, J., Keys, A. J. and Parry, M. A. J. 1995. Engineering Rubisco to change its catalytic properties. Journal of Experimental Botany. 46(Special issue), pp. 1269-1276.
Mitchell, R. A. C., Lawlor, D. W., Mitchell, V. J., Gibbard, C. L., White, E. M. and Porter, J. R. 1995. Effects of elevated CO2 concentration and increased temperature on winter wheat: test of ARCWHEAT1 simulation model. Plant, Cell & Environment. 18 (7), pp. 736-748.
Mitchell, R. A. C. 1995. Modelling the link between biomass production and grain yield in wheat crops grown at elevated CO2. Oxford University Press (OUP) Oxford.
Lawlor, D. W., Mitchell, R. A. C., Mitchell, V. J., Driscoll, S. P., Delgado, E., Parry, M. A. J., Bambridge, L. and Habash-Bailey, D. 1995. Climate change and winter wheat: effects on photosynthesis, productivity and yield. Oxford University Press (OUP) Oxford.
Kocabas, Z., Craigon, J., Mitchell, R. A. C. and Perry, J. N. 1994. Sensitivity of a winter wheat model to changes in temperature and radiation. In:&nbsp;Proceedings of the Twenty-Fourth Meeting of the AFRC Modellers' Group. Cambridge University Press.
Delgado, E., Mitchell, R. A. C., Parry, M. A. J., Driscoll, S. P., Mitchell, V. J. and Lawlor, D. W. 1994. Interacting effects of CO2 concentration, temperature and nitrogen supply on the photosynthesis and composition of winter wheat leaves. Plant, Cell & Environment. 17 (11), pp. 1205-1213.
Mitchell, R. A. C., Lawlor, D. W. and Porter, J. R. 1993. Interaction of CO2 and temperature in the growth and yield of winter wheat: test of the ARCWHEAT model. Vegetatio. 104/105, pp. 460-461.
Mitchell, R. A. C. and Lawlor, D. W. 1993. The effects of increased temperature and CO2 concentration on winter wheat: test of model predictions. Oxford University Press (OUP) Oxford.
Mitchell, R. A. C., Mitchell, V. J., Driscoll, S. P., Franklin, J. F. and Lawlor, D. W. 1993. Effects of increased CO2 concentration and temperature on growth and yield of winter wheat at two levels of nitrogen application. Plant, Cell & Environment. 16 (5), pp. 521-529.
Lawlor, D. W., Mitchell, R. A. C., Franklin, J. F., Mitchell, V. J., Driscoll, S. P. and Delgado, E. 1993. Facility for studying the effects of elevated carbon dioxide concentration and increased temperature on crops. Plant, Cell & Environment. 16 (5), pp. 603-608.
Sensitivity analyses of the ARCWHEAT1 crop model: the effect of changes in radiation and temperature.
Kocabas, Z., Mitchell, R. A. C., Craigon, J. and Perry, J. N. 1993. Sensitivity analyses of the ARCWHEAT1 crop model: the effect of changes in radiation and temperature. The Journal of Agricultural Science. 120, pp. 149-158.
Delgado, E., Driscoll, S. P., Mitchell, R. A. C. and Lawlor, D. W. 1992. Climate change and wheat photosynthesis: interactive effects of CO2, temperature and nitrogen nutrition.
Lawlor, D. W. and Mitchell, R. A. C. 1991. The effects of increasing CO2 on crop photosynthesis and productivity: a review of field studies. Plant, Cell & Environment. 14 (8), pp. 807-818.
Mitchell, R. A. C., White, E. and Sylvester-Bradley, R. 1991. Prediction of flag-leaf emergence in wheat crops. Field Crops Research. 27, pp. 119-130.
Mitchell, R. A. C., Lawlor, D. W. and Young, A. T. 1991. Dark respiration of winter wheat crops in relation to temperature and simulated photosynthesis. Annals of Botany. 67, pp. 7-16.
Mitchell, R. A. C., Spillmann, A. and Haehnel, W. 1990. Plastoquinol diffusion in linear photosynthetic electron transport. Biophysical Journal. 58, pp. 1011-1024.
Mitchell, R. A. C. 1990. Poster presentation: the effects of climate change on wheat yields: sensitivity of model predictions to increases in cloud cover. Bennett, R. M. (ed.) The 'greenhouse effect' and UK agriculture. Centre for Agricultural Strategy (CAS), University of Reading.
Effects of foliar-applied ureaon leaf composition, photosynthesis and grain quality and yield.
Lawlor, D. W., Milford, G. F. J., Mitchell, V. J. and Mitchell, R. A. C. 1989. Effects of foliar-applied ureaon leaf composition, photosynthesis and grain quality and yield. AFRC Meeting on Plant and Soil Nitrogen Metabolism, Lancaster, 1989, Abstract 58..

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