Source: http://www.genomic-resources.eus/?page_id=27
Timestamp: 2019-04-24 20:46:53+00:00

Document:
G. Catanese, R. Watteaux, I. Montes, M. Barra, P. Rumolo, D.Borme, B. Buongiorno Nardelli, V. Botte, M.G. Mazzocchi, S. Genovese, I. Di Capua, M. Iriondo, A. Estonba, P. Ruggeri, V. Tirelli, V. Caputo-Barucchi, G. Basilone, A. Bonanno, D. Iudicone, G. Procaccini. 2017. Insights on the drivers of genetic divergence in the European anchovy. Scientific Reports, 7(1):4180.
I. Montes, I. Zarraonaindia, M. Iriondo, W.S. Grant, C. Manzano, U. Cotano, D. Conklin, X. Irigoien, A. Estonba. 2016. Transcriptome analysis deciphers evolutionary mechanisms underlying genetic differentiation between coastal and offshore anchovy populations in the Bay of Biscay. Marine Biology, 163(10):205.
I. Montes, M. Iriondo, C. Manzano, M. Santos, D. Conklin, G.R. Carvalho, X. Irigoien, A. Estonba. 2016. No loss of genetic diversity in the exploited and recently collapsed population of Bay of Biscay anchovy (Engraulis encrasicolus, L.). Marine Biology, 163(5):98.
I. Miguel, L. Garnery, M. Iriondo, M. Baylac, C. Manzano, S. Sheppard, A. Estonba. 2015. Origin, evolution and conservation of the honey bees from La Palma Island (Canary Islands): molecular and morphological data. Journal of Apicultural Research 54(5):427-440.
M. J. Sanz-Martin, A. Estonba, C. Manzano, M. Iriondo, G. Pérez-Suárez, A. Fernández, F. Palacios. 2014. Genetic Structure of Brown and Iberian Hare Populations in Northern Iberia: Implications for Conservation of Genetic Diversity. Journal of Wildlife Management, 78(4):632-644.
U. Laconcha, M. Iriondo, H. Arrizabalaga, C. Manzano, P. Markaide, I. Montes, I. Zarraonaindia, I. Velado, E. Bilbao, N. Goñi, J. Santiago, A. Domingo, S. Karakulak, I.K. Oray, A. Estonba. 2014. New nuclear SNP markers unravel the genetic structure and effective population size of albacore tuna (Thunnus alalunga). PLoS ONE, 10(6):e0128247.
G. Chust, A. Albaina, A. Aranburu, A. Borja, O. E. Diekmann, A. Estonba, J. Franco, J. M. Garmendia, M. Iriondo, I. Muxika, F. Rendo, J. G. Rodríguez, O. Ruiz-Larrañaga, E. A. Serrão, M. Valle. 2013. Connectivity, neutral theories, and the assessment of species vulnerability to global change in temperate estuaries. Estuarine Coastal and Shelf Science (ECSS), 131:52-63.A.
Albaina, M. Iriondo, I. Velado, U. Laconcha, I. Zarraonaindia, H. Arrizabalaga, N. Goñi, M. Lutcavage, W. S. Grant, A. Estonba. 2013. Single nucleotide polymorphism discovery in albacore and Atlantic bluefin tuna provide insights into world-wide population structure. Animal Genetics, 44(6):678-92.
I. Montes, M. Iriondo, C. Manzano, H. Arrizabalaga, E. Jiménez, M. A. Pardo, N. Goñi, C. A. Davies, A. Estonba. 2012. Worldwide genetic structure of albacore (Thunnus alalunga) revealed by microsatellite DNA markers. Marine Ecology Progress Series, 471:183-191.
I. Zarraonaindia, M. Iriondo, A. Albaina, M. A. Pardo, C. Manzano, W. S. Grant, X. Irigoien, A. Estonba. 2012. Multiple SNP markers reveal fine-scale population and deep phylogeographic structure in European anchovy (Engraulis encrasicolus L.). PLoS ONE, 7(7):e42201.
I. Miguel, M. Baylac, M. Iriondo C. Manzano, L. Garnery, A. Estonba. 2011. Both geometric morphometric and microsatellite data consistently support the differentiation of the Apis mellifera M evolutionary branch. Apidologie, 42:150-161.
I. Zarraonaindia, M.A. Pardo, M. Iriondo, C. Manzano, A. Estonba. 2009. Microsatellite variability in European anchovy (Engraulis encrasicolus) calls for further investigation of its genetic structure and biogeography. ICES Journal of Marine Science, 56:2176-2182.
I. Miguel, M. Iriondo, L. Garnery, S. Sheppard, A. Estonba. 2007. Gene flow within the M evolutionary lineage of Apis mellifera: role of the Pyrenees, isolation by distance and post-glacial re-colonization routes in the western Europe. Apidologie, 38:141-155.
I. Montes, U. Laconcha, M. Iriondo, C. Manzano, H. Arrizabalaga, A. Estonba. 2017. Reduced Single Nucleotide Polymorphism Panels for Assigning Atlantic Albacore and Bay of Biscay Anchovy Individuals to Their Geographic Origin: Toward Sustainable Fishery Management. Journal of Agricultural and Food Chemistry, 65(21): 4351-4358.
A. Albaina, X. Irigoien, U. Aldalur, U. Cotano, M. Santos, G. Boyra, A. Estonba. 2015. A real-time PCR assay to estimate invertebrate and fish predation on anchovy eggs in the Bay of Biscay. Progress in Oceanography, 131: 82–99.
M. Pawluczyk, J. Weiss, M.G. Links, M.E. Aranguren, M.D. Wilkinson, M. Egea-Cortines. 2015. Quantitative evaluation of bias in PCR amplification and Next Generation Sequencing derived from metabarcoding samples. Analytical and Bioanalytical Chemistry 2015: 1-8.
J.L. Horreo, D. Abad, E. Dopico, M. Oberlin, E. Garcia-Vazquez. 2015. Expansion of Non-Native Brown Trout in South Europe May Be Inadvertently Driven by Stocking: Molecular and Social Survey in the North Iberian Narcea River. Int J Mol Sci, 16(7): 15546–15559.
A. Albaina, X. Irigoien, U. Aldalur, G. Boyra, M. Santos, A. Estonba. in press first published online: November 23, 2014. Macrozooplankton predation impact on anchovy (Engraulis encrasicolus) eggs mortality at the Bay of Biscay shelf break spawning centre. Ices Journal of Marine Science, 72(5):1370-1379.
A. Albaina, M. Taylor, C. Fox. 2012. Molecular detection of plaice remains in the stomachs of potential predators on a flatfish nursery ground. Marine Ecology Progress Series, 444:223-238.
E. Ochoa, M. Iriondo, C. Manzano, A. Fullaondo, I. Villar, G. Ruiz-Irastorza, A.M. Zubiaga, A. Estonba. 2016. LDLR and PCSK9 are associated with the presence of antiphospholipid antibodies and the development of thrombosis in aPLA carriers. PLoS ONE 11(1):e0146990.
J. Prechl, K. Papp, Z. Hérincs, H. Peterfy, V. Lorand, Z. Szittner, J. del Amo, M. Uribarri, P. Rovero, A. Estonba, I. Paolini, P. Migliorini, O. Ruiz Larrañaga, C. Alcaro, C. Laszlo. 2016. Serological and Genetic Evidence for Altered Complement System Functionality in Systemic Lupus Erythematosus: Findings of the GAPAID Consortium. PloS ONE 11(3):e0150685.
O. Ruiz-Larrañaga, P. Migliorini, M. Uribarri, L. Czirják, M. C. Alcaro, J. del Amo, S. M. Iriondo, Escorza-Treviño, A. Estonba. 2016. Genetic association study of systemic lupus erythematosus and disease subphenotypes in European populations: results from GAPAID project. Clinical Rheumatology 35(5):1161-1168.
O. Ruiz-Larrañaga, P. Vazquez, M. Iriondo, C. Manzano, M. Agirre, J. M. Garrido, R. A. Juste, A. Estonba. Evidence for gene-gene epistatic interactions between susceptibility genes for Mycobacterium avium subsp. paratuberculosis infection in cattle. Livestock Science 195:63-66.
O. Ruiz-Larrañaga, M. Uribarri, M. C. Alcaro, S. Escorza-Treviño, J. del Amo, M. Iriondo, P. Migliorini, L. Czirják, A. Estonba. 2015. Genetic variants associated with RA patients and serotypes in European populations: results from GAPAID project. Clinical and Experimental Rheumatology 34(2):236-241.
M. Uribarri, O. Ruiz-Larrañaga, D. Arteta, L. Hernández, C. Alcaro, A. Martínez, S. Escorza-Treviño, A. Estonba, P. Migliorini, L. Czirjak, J. del Amo. 2015. Influence of MTHFR C677T polymorphism on methotrexate monotherapy discontinuation in rheumatoid arthritis patients: results from the GAPAID European Project. Clinical and Experimental Rheumatology, 33(5):0699-0705.
L. Valcárcel-Ocete, G. Alkorta-Aranburu, M. Iriondo, A. Fullaondo, M. García-Barcina, J.M. Fernández-García, E. Lezcano-García, J.M. Losada-Domingo, J. Ruiz-Ojeda, A. Álvarez de Arcaya, J.M. Pérez-Ramos, R.A.C. Roos, J.E. Nielsen, C. Saft, REGISTRY investigators of the European Huntington’s Disease Network, A.M. Zubiaga, A. Aguirre. 2015. Exploring genetic factors involved in Huntington disease age of onset: E2F2 as a new potential modifier gene. PLoS ONE, 10(7):e0131573.
P. Vazquez, O. Ruiz-Larrañaga, J.M. Garrido, I. Iriondo, C. Manzano, M. Agirre, A. Estonba, R.A. Juste. 2014. Genetic association analysis of paratuberculosis grades in Holstein-Friesian cattle. Veterinary Medicine International, 2014:321327.
E. Ochoa, M. Iriondo, A. Bielsa, G. Ruiz-Irastorza, A.Estonba, A. Zubiaga. 2013. Thrombotic antiphospholipid syndrome shows strong haplotypic association with SH2B3-ATXN2 locus. PLOS ONE 8(7): e67897.
O. Ruiz-Larrañaga, M. Iriondo, C. Manzano, M. Aguirre, J.M. Garrido, R.A. Juste, A. Estonba. 2012. Single nucleotide polymorphisms in the bovine CD209 candidate gene for susceptibility to infection by Mycobacterium avium subsp. paratuberculosis. Animal Genetics, 43(5):646-647.
I. Montes, M. Iriondo, C. Manzano, A. Estonba. 2018. Development of gene-associated single nucleotide polymorphisms for Japanese anchovy Engraulis japonicus through cross-species amplification. Fisheries Science 84(1):1-7.
G. Catanese, I. Montes, M. Iriondo, A. Estonba, D. Iudicone, G. Procaccini. 2016. High resolution SNPs selection in Engraulis encrasicolus through Taqman OpenArray. Fisheries Research, 177:31-38.
Genomic Resources Development Consortium, P. Álvarez , W. Arthofer, M.M. Coelho, D. Conklin, A. Estonba, A.R. Grosso, S.J. Helyar, J. Langa, M.P. Machado, I. Montes, J. Pinho, A. Reif, M. Schartl, B.C Schlick-Steiner, J. Seeber, F.M. Steiner, C. Vilas. 2015. Genomic Resources Notes Accepted 1 June 2015 – 31 July 2015. Molecular Ecology Resources, 15(6):1510-1512.
I. Montes, D. Conklin, A. Albaina, S. Creer, G.R. Carvalho, M. Santos, A. Estonba (* equal contribution). 2013. SNP discovery in European anchovy (Engraulis encrasicolus, L) by high-throughput transcriptome and genome sequencing. PLoS ONE 8(8): e70051.
Molecular Ecology Resources Primer Development Consortium, A. G. Abreu, A. Albaina, T. J. Alpermann, V. E. Apkenas, S. Bankhead-Dronnet, S. Bergek, M. L. Berumen, C. H. Cho, J. Clobert, A. Coulon, D. de Feraudy, A. Estonba, T. Hankeln, A. Hochkirch, T. W. Hsu, T. J. Huang, X. Irigoien, M. Iriondo, K. M. Kay, T. Kinitz, L. Kothera, M. le Hénanff, F. Lieutier, O. Lourdais, C. M. Macrini, C. Manzano, C. Martin, V. R. Morris, G. Nanninga, M. A. Pardo, J. Plieske, S. Pointeau, T. Prestegaard, M. Quack, M. Richard, H. M. Savage, K. D. Schwarcz, J. Shade, E. L. Simms, V. N. Solferini, V. M. Stevens, M. Veith, M. J. Wen, F. Wicker, J. M. Yost, I. Zarraonaindia. 2012. Permanent genetic resources added to Molecular Ecology Resources Database 1 October 2011-30 November 2011. Molecular Ecology Resources, 12(2):374-376.
D. Abad, A. Albaina, M. Aguirre, A. Laza-Martínez, I. Uriarte, A. Iriarte, F. Villate, A. Estonba. 2016. Is metabarcoding suitable for estuarine plankton monitoring? A comparative study with microscopy. Mar Biol 163, 1–13.
Albaina, I. Uriarte, M. Aguirre, D. Abad, A. Iriarte, F. Villate, A. Estonba. 2016. Insights on the origin of invasive copepods colonizing Basque estuaries; a DNA barcoding approach. Mar. Biodivers Rec., 9(1).
L. Miralles, A. Ardura, A. Arias, Y. J. Borrell, L. Clusa, E. Dopico, A. Hernandez de Rojas, B. Lopez, M. Muñoz-Colmenero, A. Roca, A. Valiente, A. Zaiko, E. Garcia-Vazquez. 2016. Barcodes of marine invertebrates from north Iberian ports: Native diversity and resistance to biological invasions. Marine pollution Bulletin, 112: 183-188.
N. Sangwan, I. Zarraonaindia, J.T. Hampton-Marcell, H. Seegane, T.W. Eshoo, G. Rijal, M.C. Negri, J.A. Gilbert. 2016. Differential functional constraints cause strain-level endemism in Polynucleobacter populations. mSystems, 1(3):e00003-16.
A. Albaina, M. Aguirre, D. Abad, M. Santos, A. Estonba. 2016. 18S rRNA V9 metabarcoding for diet characterization: a critical evaluation with two sympatric zooplanktivorous fish species. Ecol Evol, 6: 1809–1824.
I. Zarraonaindia, S.M. Owens, P. Weisenhorn, K. West, J. Hampton-Marcel, S. Lax, N.A. Bokulich, D.A. Mills, G. Martin, S. Taghavi, D. van der Lelie, J.A. Gilbert. 2015. The soil microbiome influences grapevine-associated microbiota. mBio 6(2):e02527-14. doi:10.1128/mBio.02527-14.
I. Zarraonaindia, J. Gilbert. 2014. Probing the Microbial Mysteries of Wine. Microbe. 9 – 11, pp. 442 – 447. 2014.
M. Aranguren, M. Wilkinson. 2015. Enhanced reproducibility of SADI web service workflows with Galaxy and Docker. GigaScience, 4:59.

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