Source: https://gendata.weebly.com/publications.html
Timestamp: 2019-04-22 12:48:20+00:00

Document:
Cumbo F, Fiscon G, Masseroli M, Ceri S, Weitschek E. TCGA2BED: extracting, extending, integrating, and querying The Cancer Genome Atlas. BMC Bioinformatics 2016 (submitted).
Masseroli M, Kaitoua A, Pinoli P, Ceri S. Modeling and interoperability of heterogeneous genomic big data for integrative processing and querying. Methods 2016 (submitted).
Montanari P, Bartolini I, Ciaccia P, Patella M, Ceri S, Masseroli M. Searching patterns in genomic sequences. IEEE Transaction on Knowledge and Data Engineering 2016 (submitted).
Ceri S, Kaitoua A, Masseroli M, Pinoli P, Venco F. Data management for heterogeneous genomic datasets. IEEE/ACM Transactions on Computational Biology and Bioinformatics 2016 (in press).
Canakoglu A, Ceri S, Masseroli M. Biomolecular annotation integration and querying to help unveiling new biomedical knowledge. In: Ortuño F, Rojas I, editors. Bioinformatics and Biomedical Engineering. ISBN 978-3-319-31743-4. Heidelberg, D: Springer; 2016. p. 802-813. LNCS (Lecture Notes in Bioinformatics; vol 9656). DOI: 10.1007/978-3-319-31744-1.
Ceri S, Kaitoua A, Pinoli P, Masseroli M. Genomic data modeling for interoperability and next generation genomic data management. In: Ortuño F, Rojas I, editors. Proceedings Extended Abstracts 4th International Work-Conference on Bioinformatics and Biomedical Engineering (IWBBIO 2016), April 20-22, 2016; Granada, SP. ISBN 978-84-16478-75-0. Granada, SP: Editorial Godel S.L.; 2016. p. 471-474.
Ceri S, Kaitoua A, Masseroli M, Pinoli P, Venco F. Data management for next generation genomic computing. In: Pitoura E, Maabout S, Koutrika G, Marian A, Tanca L, Manolescu I, Stefanidis K, editors. Proceedings of the 19th International Conference on Extending Database Technology / 19th International Conference on Database Theory, EDBT/ICDT 2016 Joint Conference, March 15-18, 2016; Bordeaux, FR. ISBN 978-3-89318-070-7. Konstanz, DE; OpenProceedings.org; 2016. p. 485-490.
E. Weitschek, F. Cunial, G. Felici: LAF: Logic Alignment Free and its application to bacterial genomes classification. BioData Mining, doi: 10.1186/s13040-015-0073-1, 2015.
V. Cestarelli*, G. Fiscon*, G. Felici, P. Bertolazzi, E. Weitschek*: CAMUR: Knowledge extraction from RNA-seq cancer data through equivalent classification rules. Bioinformatics, doi: 10.1093/bioinformatics/btv635, 2015.
Masseroli M, Canakoglu A, Quigliatti M. Detection of gene annotations and protein-protein interaction associated disorders through transitive relationships between integrated annotations. BMC Genomics 2015; 16(Suppl 6):S5, p. 1-16.
Pinoli P, Chicco D, Masseroli M. Computational algorithms to predict Gene Ontology annotations. BMC Bioinformatics 2015; 16(Suppl 6): S4, p. 1-15.
Domeniconi G, Masseroli M, Moro G, Pinoli P. Random perturbations of term weighted Gene Ontology annotations for discovering gene unknown functionalities. In: Fred A, Dietz J, Aveiro D, Liu K, Filipe J, editors. Knowledge Discovery, Knowledge Engineering and Knowledge Management. ISBN 978-3-662-46548-6. Heidelberg, D: Springer; 2015. p. 181-197. Communications in Computer and Information Science; vol 553.
Chicco D, Masseroli M. Validation procedures for predicted Gene Ontology annotations. In: Angelini C, Decarli A, Bongcam-Rudloff E, editors. Proceedings of the 12th International Meeting on Computational Intelligence Methods for Bioinformatics and Biostatistics, CIBB 2015, Sep 10-12, 2015; Napoli, IT. Salerno, IT: Università di Salerno; 2015. p. 1-6. Proceedings of CIBB; vol. 12.
E. Weitschek, G. Fiscon, V. Fustaino, G. Felici, P. Bertolazzi: Clustering and Classification Techniques for Gene Expression Profiles Pattern Analysis. In Pattern Recognition in Computational Molecular Biology: Techniques and Approaches, Elloumi M, Zomaya AY eds., Wiley Series in Bioinformatics, Wiley, 2015.
L. Baldacci, M. Golfarelli, S. Graziani, S. Rizzi. Analyzing Genomic Mappings with the GOLAM Framework. Convegno Nazionale su Sistemi Evoluti Per Basi Di Dati (SEBD 2015), Gaeta, Italy, 2015.
G. Domeniconi, M. Masseroli, G. Moro, P.Pinoli. Discovering new gene functionalities from random perturbations of known gene ontological annotations. In: Fred A, Filipe J, editors. Proceedings of the 6th International Conference on Knowledge Discovery and Information Retrieval – KDIR 2014, Oct 21-24, 2014; Roma, IT. ISBN 978-989-758-048-2. Lisbon, PT: SCITEPRESS – Science and Technology Publications; 2014. p. 107-116.
P.Di Lena, G. Domeniconi, L. Margara, G. Moro, "GOTA: GO Term Annotation of biomedical literature” Accepted for publication in BMC Bioinformatics Journal.
Giacomo Domeniconi, Gianluca Moro, Roberto Pasolini, and Claudio Sartori. Iterative Refining of Category Profiles for Nearest Centroid Cross-domain Text Classification. To Appear In Knowledge Discovery, Knowlege Engineering and Knowledge Management. Springer, 2015.
Giacomo Domeniconi, Gianluca Moro, Roberto Pasolini, and Claudio Sartori. A study on term weighting for text categorization: a novel supervised variant of tf.idf. To appear in proceedings of 4th International Conference on Data Management Technologies and Applications (DATA). 20-22 July 2015, Alsace, France.
S. De Capitani di Vimercati, S. Foresti, S. Paraboschi, G. Pelosi, P. Samarati, "Shuffle Index: Efficient and Private Access to Outsourced Data," in ACM Transactions on Storage (TOS), 2015.
S. De Capitani di Vimercati, S. Foresti, S. Jajodia, G. Livraga, S. Paraboschi, P. Samarati, "Loose Associations to Increase Utility in Data Publishing," in Journal of Computer Security (JCS), vol. 23, n. 1, 2015, pp. 59-88.
S. De Capitani di Vimercati, S. Foresti, S. Jajodia, S. Paraboschi, P. Samarati, "Integrity for Approximate Joins on Untrusted Computational Servers," in Proc. of the 30th International Information Security and Privacy Conference (SEC 2015), Hamburg, Germany, May 26-28, 2015.
S. De Capitani di Vimercati, S. Foresti, G. Livraga, P. Samarati, "Selective and Private Access to Outsourced Data Centers," in Handbook on Data Centers, S.U. Khan, A.Y. Zomaya (eds.), Springer, 2015.
R. Donida Labati, V. Piuri, F. Scotti, Touchless Fingerprint Biometrics, CRC Press, 2015. ISBN: 9781498707619.
Vaskin Y, Masseroli M, Pinoli P, Venco F, Kaitoua A, Jalili V, Palluzzi F, Muller H, Ceri S. GMQL Services - generic, easy-to-use infrastructure for genomic data retrieval and processing. In: Milanesi L, Mauri G, Masseroli M, editors. BITS 2015: 12th Annual Meeting of the Bioinformatics Italian Society; Jun 3-5, 2015; Milano, IT. Roma, IT: BITS; 2015. p. 255-256.
Cumbo F, Fiscon G, Ceri S, Masseroli M, Weitschek E. The Cancer Genome Atlas data querying tool. In: Milanesi L, Mauri G, Masseroli M, editors. BITS 2015: 12th Annual Meeting of the Bioinformatics Italian Society; Jun 3-5, 2015; Milano, IT. Roma, IT: BITS; 2015. p. 120-121.
Palluzzi F, Masseroli M, Pinoli P, Venco F, Kaitoua A, Jalili V, Muller H, Ceri S. GenoMetric Query Language applications to the integrative evaluation of heterogeneous genomic data. In: Milanesi L, Mauri G, Masseroli M, editors. BITS 2015: 12th Annual Meeting of the Bioinformatics Italian Society; Jun 3-5, 2015; Milano, IT. Roma, IT: BITS; 2015. p. 57-58.
Jalili V, Matteucci M, Masseroli M, Morelli M. Using replicates to evaluate ChIP-seq peaks. In: Helmer-Citterich M, Pizzi E, Tramontano A, editors. BITS 2014: 11th Annual Meeting of the Bioinformatics Italian Society; Feb 26-28, 2014; Roma, IT. Roma, IT: BITS; 2014. NGS-GTN23. p. 150-151.
L. Baldacci, M. Golfarelli, S. Graziani, S. Rizzi. GOLAM: A Framework for Analyzing Genomic Data. In Proc. DOLAP 2014, Shanghai, China, pp. 3-12, 2014.
Domeniconi G, Masseroli M, Moro G, Pinoli P. Discovering new gene functionalities from random perturbations of known gene ontological annotations. In: Fred A, Filipe J, editors. Proceedings of the 6th International Conference on Knowledge Discovery and Information Retrieval - KDIR 2014, Oct 21-24, 2014; Roma, IT. [CD-ROM] ISBN 978-989-758-048-2. Lisbon, PT: SCITEPRESS - Science and Technology Publications; 2014. p. 107-116.
E. Weitschek, D. Santoni, G. Fiscon, M.C. De Cola, P. Bertolazzi, G. Felici: Next generation sequencing reads comparison with an alignment-free distance. BMC Research Notes, 7:869, 2014.
D. Polychronopoulos, E. Weitschek, S. Dimitrieva, P. Bucher, G. Felici, Y. Almirantis: Classification of selectively constrained DNA elements using feature vectors and rule-based classifiers. Elsevier Genomics, 104(2):79-86, 2014.
E. Weitschek, G. Fiscon, G. Felici: Supervised DNA Barcodes species classification: analysis, comparisons, and results. Biodata Mining, 7(1), 2014.
G. Fiscon, E. Weitschek, G. Felici, P. Bertolazzi, S. de Salvo, P. Bramante, M.C. De Cola: Alzheimer's disease patients classification through EEG signals processing. In Proceedings of SSCI 2014 - IEEE Symposium Series on Computational Intelligence and Data Mining, pp. 105-112. IEEE, 2014.
E. Weitschek, F. Cunial, G. Felici: Classifying bacterial genomes on k-mer frequencies with compact logic formulas. In Database and Expert Systems Applications (DEXA), 25th International Workshop on Biological Knowledge Discovery, pp. 69-73. IEEE, 2014.
C. (2014). Distance-based outlier approach to improve the detection of genomic loci undergoing differentiation in worldwide human populations. Workshop Bringing Maths to Life (BMTL 2014), , Naples, Italy, October 27-29, 2014.
Giacomo Domeniconi, Gianluca Moro, Roberto Pasolini, Claudio Sartori. Cross-domain Text Classification through Iterative Refining of Target Categories Representations. Best student paper award in proceedings of KDIR 2014. pp 31-42.
S. De Capitani di Vimercati, S. Foresti, S. Jajodia, G. Livraga, S. Paraboschi, P. Samarati, "Fragmentation in Presence of Data Dependencies," in IEEE Transactions on Dependable and Secure Computing (TDSC), vol. 11, n. 6, November/December 2014, pp. 510-523.
S. De Capitani di Vimercati, S. Foresti, S. Jajodia, G. Livraga, S. Paraboschi, P. Samarati, "Integrity for Distributed Queries," in Proc. of the 2nd IEEE Conference on Communications and Network Security (CNS 2014), San Francisco, CA, USA, October 29-31, 2014.
S. De Capitani di Vimercati, S. Foresti, S. Jajodia, S. Paraboschi, P. Samarati, "Optimizing Integrity Checks for Join Queries in the Cloud," in Proc. of the 28th Annual IFIP WG 11.3 Working Conference on Data and Applications Security and Privacy (DBSec 2014), Vienna, Austria, July 14-16, 2014.
R. Donida Labati, V. Piuri, R. Sassi, G. Sforza, F. Scotti, "Adaptive ECG Biometric Recognition: A study on Re-enrollment Methods for QRS Signals," in Proc. of the IEEE Workshop on Computational Intelligence in Biometrics and Identity Management (CIBIM 2014), Orlando, FL, USA, December 9-12, 2014.
S. De Capitani di Vimercati, S. Foresti, S. Paraboschi, G. Pelosi, P. Samarati, "Protecting Access Confidentiality with Data Distribution and Swapping," in Proc. of the 4th IEEE International Conference on Big Data and Cloud Computing (BDCloud 2014), Sydney, Australia, December 3-5, 2014.
P. Samarati, "Data Security and Privacy in the Cloud," in Proc. of 10th International Conference on Information Security Practice and Experience (ISPEC 2014), Fuzhou, China, May 5-8, 2014.
S. De Capitani di Vimercati, R.F. Erbacher, S. Foresti, S. Jajodia, G. Livraga, P. Samarati, "Encryption and Fragmentation for Data Confidentiality in the Cloud," in Foundations of Security Analysis and Design VII, A. Aldini, J. Lopez, F. Martinelli (eds.), Springer, 2014.
S. De Capitani di Vimercati, S. Foresti, P. Samarati, "Selective and Fine-Grained Access to Data in the Cloud," in Secure Cloud Computing, S. Jajodia, K. Kant, P. Samarati, V. Swarup, C. Wang (eds.), Springer, 2014.
A. Genovese, V. Piuri, F. Scotti, Touchless Palmprint Recognition Systems, Springer, 2014. ISBN: 978-3-319-10365-5.
D. Polychronopoulos*, E. Weitschek*, S. Dimitrieva, P. Bucher, G. Felici, Y. Almirantis: Classification of selectively constrained DNA elements using feature vectors and rule-based classifiers. Elsevier Genomics, 104(2):79-86, 2014. Impact Factor: 2.8 *(joint first authors).
​C.A. Ardagna, R. Jhawar, V. Piuri, "Dependability Certification of Services: A Model-Based Approach," in Computing, Springer, October 2013.
S. De Capitani di Vimercati, S. Foresti, S. Jajodia, S. Paraboschi, P. Samarati, "Integrity for Join Queries in the Cloud," in IEEE Transactions on Cloud Computing (TCC), vol. 1, n. 2, July-December 2013, pp. 187-200.
S. De Capitani di Vimercati, S. Foresti, S. Jajodia, G. Livraga, S. Paraboschi, P. Samarati, "Enforcing Dynamic Write Privileges in Data Outsourcing," in Computers & Security, vol. 39, November 2013, pp. 47-63.
C.A. Ardagna, S. Jajodia, P. Samarati, A. Stavrou, "Providing Users' Anonymity in Mobile Hybrid Networks," in ACM Transactions on Internet Technology (TOIT), vol. 12, n. 3, May 2013, pp. 1-33 (article 7).
S. De Capitani di Vimercati, S. Foresti, S. Paraboschi, G. Pelosi, P. Samarati, "Supporting Concurrency and Multiple Indexes in Private Access to Outsourced Data," in Journal of Computer Security (JCS), vol. 21, n. 3, 2013, pp. 425-461.
R. Donida Labati, R. Sassi, F. Scotti, "ECG Biometric Recognition: Permanence Analysis of QRS Signals for 24 Hours Continuous Authentication," in Proc. of the IEEE International Workshop on Information Forensics and Security (WIFS 2013), Guangzhou, China, November 18-21, 2013.
A. Bonissi, R. Donida Labati, L. Perico, R. Sassi, F. Scotti, L. Sparagino, "A Preliminary Study on Continuous Authentication Methods for Photoplethysmographic Biometrics," in Proc. of the 2013 IEEE Workshop on Biometric Measurements and Systems for Security and Medical Applications (BioMS 2013), Napoli, Italy, September 9, 2013.
S. De Capitani di Vimercati, S. Foresti, S. Paraboschi, G. Pelosi, P. Samarati, "Distributed Shuffling for Preserving Access Confidentiality," in Proc. of the 18th European Symposium on Research in Computer Security (ESORICS 2013), Egham, U.K., September 9-11, 2013.
R. Jhawar, V. Piuri, "Adaptive Resource Management for Balancing Availability and Performance in Cloud Computing," in Proc. of the 10th International Conference on Security and Cryptography (SECRYPT 2013), Reykjavik, Iceland, July 29-31, 2013.
S. De Capitani di Vimercati, S. Foresti, S. Jajodia, G. Livraga, S. Paraboschi, P. Samarati, "Extending Loose Associations to Multiple Fragments," in Proc. of the 27th Annual IFIP WG 11.3 Working Conference on Data and Applications Security and Privacy (DBSec 2013), Newark, NJ, USA, July 15-17, 2013.
R. Donida Labati, A. Genovese, V. Piuri, F. Scotti, "Contactless Fingerprint Recognition: A Neural Approach for Perspective and Rotation Effects Reduction," in Proc. of the IEEE Workshop on Computational Intelligence in Biometrics and Identity Management (CIBIM), Singapore, Singapore, April 16-19, 2013.
S. De Capitani di Vimercati, S. Foresti, S. Jajodia, S. Paraboschi, P. Samarati, "On Information Leakage by Indexes over Data Fragments," in Proc. of the 1st International Workshop on Privacy-Preserving Data Publication and Analysis (PrivDB 2013), Brisbane, Australia, April 8, 2013.
Palluzzi F, Canakoglu A, Chicco D, Ceri S, Masseroli M. Bio-SeCo & GPDW: Bio Search Computing & Genomic and Proteomic Data Warehouse. In: Masseroli M, Milanesi L, editors. 1° Bioinformatics, Computational Biology and System Biology Lombardy Day (BioLom 2013); November 27, 2013; Milan, IT. Milan, IT: Politecnico di Milano; 2013. p. 10.
Ceri S, Masseroli M. Disclosing genome properties with Genometric Query Language. In: Masseroli M, Milanesi L, editors. 1° Bioinformatics, Computational Biology and System Biology Lombardy Day (BioLom 2013); November 27, 2013; Milan, IT. Milan, IT: Politecnico di Milano; 2013. p. 8-9.
Palluzzi F, Venco F, Dahal S, Masseroli M, Ceri S. Integration oriented modelling of Next Generation Sequencing data. In: Fogolari F, Policriti A, editors. BITS 2013: 10th Annual Meeting of the Bioinformatics Italian Society; May 21-23, 2013; Udine, IT. Udine, IT: IGA; 2013. p. 79.

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