Source: https://rierol.net/publications.html
Timestamp: 2019-04-23 23:55:42+00:00

Document:
Matthew E. Berck*, Avinash Khandelwal*, Lindsey Claus, Luis Hernandez-Nunez, Guangwei Si, Christopher J. Tabone, Feng Li, James W. Truman, Richard D. Fetter, Matthieu Louis+, Aravinthan D. T. Samuel+, Albert Cardona+. 2016. The wiring diagram of a glomerular olfactory system. bioRxiv and eLife.
Casey M. Schneider-Mizell*, Stephan Gerhard*, Mark Longair, Tom Kazimiers, Feng Li, Maarten F. Zwart, Andrew Champion, Frank M. Midgley, Richard D. Fetter, Stephan Saalfeld, Albert Cardona. 2016. Quantitative neuroanatomy for connectomics in Drosophila. eLife.
Akira Fushiki, Maarten F. Zwart, Hiroshi Kohsaka, Richard D. Fetter, Albert Cardona* Akinao Nose*. 2006. A circuit mechanism for the propagation of waves of muscle contraction in Drosophila. eLife.
J Funke, J Klein, A Cardona, M Cook. 2015. A Tolerant edit distance for evaluation and training of electron microscopy reconstruction algorithms. arXiv preprint arXiv:1503.02291.
Albert Cardona, Stephan Saalfeld, Johannes Schindelin, Ignacio Arganda-Carreras, Stephan Preibisch, Mark Longair, Pavel Tomancak, Volker Hartenstein, Rodney J. Douglas. 2012. TrakEM2 software for neural circuit reconstruction. PLoS ONE 7(6): e38011.
Cardona A, Saalfeld S, Preibisch S, Schmid B, Cheng A, Pulokas J, Tomancak P, Hartenstein V. 2010. An Integrated Micro- and Macroarchitectural Analysis of the Drosophila Brain by Computer-Assisted Serial Section Electron Microscopy. PLoS Biol 8(10): e1000502. doi:10.1371/journal.pbio.1000502.
Bery A, Cardona A, Martinez P, Hartenstein V. 2010. Structure of the central nervous system of a juvenile acoel, Symsagittifera roscoffensis. Dev Genes Evol. 220(3-4):61-76.
Bueno. D., Fernández-Rodríguez J., Cardona, A., Hernández-Hernández, V., Romero, R. 2002. A novel invertebrate trophic factor related to invertebrate neurotrophins is involved in planarian body regional survival and asexual reproduction. Developmental Biology 252: 188-201.
Cardona A, Saalfeld S, Tomancak P, Hartenstein V. "TrakEM2: open source software for neuronal reconstruction from large serial section microscopy data." High Resolution Circuits Reconstruction, joint meeting of HHMI Janelia Farm and Max Plank Gesellschaft. September 20-22, 2009.
Cardona, A. "The real neurons: imaging/reconstructing/identifying neurons from serial sections." Neurinformatics 2009, Pilsen, Czech Republic. September 3-6, 2009.
Cardona A, Fetter R, Pereanu W, Zlatic M, Simpson J, and Hartenstein V. "Serial section TEM of a VNC abdominal segment: finding synaptic partners of neurons identified in a behavioral screen." Maggot Meeting, HHMI Janelia Farm. October 20-22, 2008.
Cardona, A. Blender's Game Engine as a Live 3D Simulator for External Programs. Blender Conference 2007. De Zwijger, Amsterdam, 12-14 October 2007. The Netherlands. Workshop.
Cardona, A., Saalfeld, S., Preibisch, S., Tomancak, P. and Hartenstein, V. 2007. Serial section TEM of fly brain. HHMI Janelia Farms Conference on Neural Circuit Reconstruction, Sept. 22-25, 2007. Poster.
Cardona, A. and Hartenstein, V. "Fly Bran Microcircuitry." Neuroanatomy and Stereotypy of the Adult Drosophila Nervous System. HHMI Janelia Farms Conference. March 11-13, 2007. Poster and poster handout.
Cardona, A. and Hartenstein, V. "Drosophila CNS Connectivity. A study of the first instar larva." Neurofly 2007. Leuven, Belgium. Talk slides and poster.
Cardona, A. "3D Modeling Fly Brains: Biologists Use Blender as a Tool." Blender Conference 2006. The Haag, Amsterdam, The Netherlands. Abstract, paper [ PDF ], talk slides and talk video recording.
Cardona, A. "TrakEM2: an ImageJ-based program for morphological data mining and 3D modeling." 1st ImageJ User and Developer Conference, Centre de Recherche Public Henri Tudor, Luxembourg, May 18-19th 2006. Talk slides.
Cardona, A., Fernández-Rodríguez, J., Solana, J., Vila, M., Hartenstein, V., Romero, R. 2005. "Planarian development." Memorial Campos-Ortega, Sevilla (Spain), May 12-16. Poster.
Cardona, A., Fernández-Rodríguez, J., Vila, M., Hernández-Hernández, V., Solana, J., Cuesta, N., Bueno, D., Hartenstein, V., Romero, R. 2003. "Insights into embryonic development of the planarian Schmidtea polychroa." CNRS - Conference Jacques Monod: Form and Function in Development and Disease. La Londe-les-Maures (France). June14-18th, 2003. Poster.
"Identifying Drosophila's secondary neuronal lineages by sequence analysis of their projection bundles." Seminar organized by Giorgio Ascoli. Krasnow Institute for Advanced Study, George Mason University, Washington DC.
"INCF Fiji Image Processing School", funded by David Wilshaw (UK INCF node) and Thomas Watchler (Germany INCF node). Plzen, Czech Republic, September 9-12, 2009. Organizer and instructor.
"Neuronal reconstruction of Drosophila larvae central nervous system." Hosted by Nico Beerenwinkel of the Computational Biology Group. Department of Biosystems Science and Engineering, Systems X, ETH Zürich; Basel. May 13th, 2009.
"Identifying Drosophila's secondary neuronal lineages by sequence analysis of their projection bundles." Seminar hosted by Heinrich Reichert, Biozentrum, Nrurobiology, University of Basel. May 12th, 2009.
"Fiji: an overview." EMBL Heildelberg, February 5th, 2009.
"The Drosophila first instar larval brain." EMBL Heidelberg, February 4th, 2009.
"TrakEM2: montage/register/analyze/segment terabytes of images. The Drosophila first instar larval brain." FENS Geneve, July 2008. Session co-chair.
"Neuroanatomy of Drosophila larval brain." Seminar hosted by the Reid (and Lichtman) labs, Harvard, Boston. May 9th, 2008.
"Bioinformatics for neurons. Identifying neurons by sequence analysis of their 3D structure." Image Processing Journal Club hosted by Hanchuan Peng and Gene Myers. April 17th, 2008. Janelia Farm, Washington.
"Fly brain connectivity." Joint Friday Seminar with Pavel and Stephan Saalfeld, from Pavel Tomancak's group at the Max Plank Institute for Molecular Cell Biology and Genetics-CBG. October 19th, 2007. Dresden, Germany.
"Analyzing neuronal structure and connectivity." Leiden University. October 16th, 2007. Leiden, the Netherlands.
"Microcircuitry." Together with Volker Hartenstein. Scripps Institute, January 25th 2007, San Diego.
"ImageJ." November 2006 at the Max Plank Institute for Molecular Cell Biology and Genetics. Slides of the talk.
"Embryonic development of planarians" at Nico Michiel's lab, Tuebingen, November 15-18th 2006. Slides of the talk.
"The embryonic development of the triclad Schmidtea polychroa."
Defended July 19th, 2005, at the University of Barcelona, Spain. Directed by Prof. Rafael Romero.
Available in printing quality [ PDF ]; also the public defense slides.
Last updated: 2013-01-14 09:15 New York time. Copyright Albert Cardona.

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