Source: https://publications.computationalscience.nl/page/6/
Timestamp: 2019-04-25 05:52:52+00:00

Document:
A. Suinesiaputra, P. J. de Koning, E. V. Zudilova-Seinstra, J. H. C. Reiber, and R. J. van der Geest. A 3D MRA Segmentation Method Based on Tubular NURBS Model. In: International Society for Magnetic Resonance in Medicine 2009. pp. 3149-3149.
G. Allen, J. Nabrzyski, E. Seidel, G. D. van Albada, J. Dongarra, and P. M. A. Sloot. In: Computational Science - ICCS 2009: 9th International Conference, Baton Rouge, LA, USA, Proceedings, Part I. ISBN 978-3-642-01969-2. Lecture Notes in Computer Science 5544.
E. V. Zudilova-Seinstra, J. Adriaanse, and A. Berg. Visualizing climate data on a tiled panel display: A user-centered approach. In: IADIS International Conference on Computer Graphics and Visualization 2008. ISBN 9789728924638. pp. 197-202.
M. Bubak, T. Gubala, M. Malawski, B. Balis, W. Funika, T. Bartynski, E. Ciepiela, D. Harezlak, M. Kasztelnik, J. Kocot, D. Krol, P. Nowakowski, M. Pelczar, J. Wach, M. Assel, and A. Tirado-Ramos. Virtual laboratory for development and execution of biomedical collaborative applications. In: Proceedings of the 21st IEEE international symposium on computer-based medical systems: June 17-19, 2008, Jyväskula, Finland. ISBN 9780769531656. pp. 373-378.
P. Sloot. ViroLab: From the molecule to the man. eStrategies Projects pp. 53-55.
P. Sloot, P. Coveney, M. T. Bubak, A.-M. Vandamme, B. Ó Nuallain, D. van de Vijver, and C. Boucher. ViroLab: A collaborative decision support system in viral disease treatment. Reviews in Antiviral Therapy 3, pp. 4-7.
T. Gubala, B. Baliś, M. Malawski, M. Kasztelnik, P. Nowakowski, M. Assel, D. Harężlak, T. Bartyński, J. Kocot, E. Ciepiela, D. Król, J. Wach, M. Pelczar, W. Funika, and M. Bubak. ViroLab Virtual Laboratory. In: Cracow'07 Grid Workshop: October 15-17, 2007 Cracow, Poland: proceedings. ISBN 9788391514191. pp. 35-40.
P. M. A. Sloot, A. Tirado-Ramos, G. Ertaylan, B. O Nuallain, D. van de Vijver, C. A. Boucher, and M. Bubak. VIROLAB: A distributed decision support system for viral disease treatment. In: Cracow'07 Grid Workshop: October 15-17, 2007 Cracow, Poland: proceedings. ISBN 9788391514191. pp. 33-34.
J. L. Guisado, F. Fernández de Vega, F. Jiménez Morales, K. A. Iskra, and P. M. A. Sloot. Using cellular automata for parallel simulation of laser dynamics with dynamic load balancing. International Journal of High Performance Systems Architecture (IJHPSA) 1(4), pp. 251-259.
K. Rycerz, M. Bubak, and P. M. A. Sloot. Using HLA and Grid for distributed multiscale simulations. Lecture Notes in Computer Science 4967, pp. 780-787.
W. Funika, D. Harężlak, D. Król, P. Pęgiel, and M. Bubak. User interfaces of the Virolab Virtual Laboratory. In: Cracow'07 Grid Workshop: October 15-17, 2007 Cracow, Poland: proceedings. ISBN 9788391514191. pp. 47-52.
T. Bartyński, M. Malawski, T. Gubała, and M. Bubak. Universal Grid client: Grid Operation Invoker. Lecture Notes in Computer Science 4967, pp. 1068-1077.
T. Gubala, M. Kasztelnik, M. Malawski, and M. Bubak. Towards a system-level science support. Lecture Notes in Computer Science pp. 56-65.
A. Wibisono, Z. Zhao, A. Belloum, and M. Bubak. Towards a Virtual Laboratory for interactive parameter sweep applications on the Grid. In: Cracow'07 Grid Workshop: October 15-17, 2007 Cracow, Poland: proceedings. ISBN 9788391514191. pp. 266-271.
B. Rexhepi. The Volatility Smile Dynamics Implied by Smile-Consistent Option Pricing Models and Empirical Data. Supervised by B. D. Kandhai and G.-Z. Qiu.
P. M. A. Sloot, S. V. Ivanov, A. V. Boukhanovsky, D. A. M. C. van de Vijver, and C. A. B. Boucher. Stochastic simulation of HIV population dynamics through complex network modelling. International Journal of Computer Mathematics 85(8), pp. 1175-1187.
E. Gaburov. Stellar collisions in young star clusters. Supervised by R. A. M. J. Wijers, P. M. A. Sloot, S. F. Portegies Zwart, and O. R. Pols.
S. Harfst, S. Portegies Zwart, and S. McMillan. Status and future of MUSE. Astronomische Nachrichten 329(9-10), pp. 885-891.
J. M. Bernsdorf. Simulation of complex flows and multi-physics with the Lattice-Boltzmann method. Supervised by P. M. A. Sloot and A. G. Hoekstra.
J. Cui, J. A. Kaandorp, and C. M. Lloyd. Simulating in vitro transcriptional response of zinc homeostasis system in Escherichia coli. BMC Systems Biology 2, p. 89.
J. Cui and J. A. Kaandorp. Simulating complex calcium-calcineurin signaling network. Lecture Notes in Computer Science pp. 110-119.
D. Groen, S. Portegies Zwart, S. McMillan, and J. Makino. Simulating N-body systems on the grid using dedicated hardware. Lecture Notes in Computer Science pp. 86-95.
E. Zudilova-Seinstra, N. Yang, L. Axner, A. Wibisono, and D. Vasunin. Service-oriented visualization applied to medical data analysis. Service Oriented Computing and Applications 2(4), pp. 187-201.
A. Tirado-Ramos. Second Workshop on Teaching Computational Science WTCS 2008. Lecture Notes in Computer Science 5102, pp. 657-658.
M. Wiens, S. I. Belikov, O. V. Kaluzhnaya, T. Adell, H. C. Schröder, S. Perovic-Ottstadt, J. A. Kaandorp, and W. E. G. Müller. Regional and modular expression of morphogenetic factors in the demosponge Lubomirskia baicalensis. Micron 39(4), pp. 447-460.
S. F. Portegies Zwart and H.-C. Chen. Reconstructing the initial relaxation time of young star clusters in the Large Magellanic Cloud. Astronomical Society of the Pacific conference series 388, pp. 329-336.
B. Baliś, M. Bubak, and J. Wach. Provenance tracking in the ViroLab Virtual Laboratory. Lecture Notes in Computer Science 4967, pp. 381-390.
B. Balis, M. Bubak, M. Pelczar, and J. Wach. Provenance tracking and querying in the ViroLab Virtual Laboratory. In: CCGRID 2008: Eighth IEEE International Symposium on Cluster Computing and the Grid: proceedings: 19-22 May, 2008, Lyon, France. ISBN 9780769531564. pp. 675-680.
B. Balis, M. Bubak, M. Pelczar, and J. Wach. Provenance tracking and querying in ViroLab. In: Cracow'07 Grid Workshop: October 15-17, 2007 Cracow, Poland: proceedings. ISBN 9788391514191. pp. 71-76.
B. Baliś, M. Bubak, M. Pelczar, and J. Wach. Provenance querying for end-users: A drug resistance case study. Lecture Notes in Computer Science 5103, pp. 80-89.
K. Rycerz, M. Bubak, P. Sloot, and V. Getov. Problem solving environment for distributed interactive applications. In: Achievements in European research on grid systems: CoreGRID Integration Workshop 2006 (selected papers), October 19-20, Krakow, Poland. ISBN 9780387728117. pp. 55-66.
R. M. Badia, R. Sirvent, M. T. Bubak, W. Funika, and P. Machner. Performance monitoring of Grid superscalar: visualization modes. In: CoreGRID integration workshop 2008 -- Integrated Research in Grid Computing: April 24, Hersonissos, Crete, Greece. ISBN 978-960-524-260-2. pp. 266-274.
R. M. Badia, R. Sirvent, M. Bubak, W. Funika, and P. Machner. Performance monitoring of Grid superscalar with OCM-G/G-PM: visualization modes. In: Integrated research in grid computing. ISBN 9789605242602. pp. 265-274.
R. M. Badia, R. Sirvent, M. Bubak, W. Funika, and P. Machner. Performance monitoring of GRID superscalar with OCM-G/G-PM: Integration issues. In: Achievements in European reseach on Grid systems: CoreGRID Integration Workshop 2006 (selected papers): October 19-20, Krakow, Poland. ISBN 9780387728117. pp. 193-205.
J. L. Guisado, F. Fernández de Vega, F. Jiménez Morales, K. A. Iskra, and P. M. A. Sloot. Parallel Cellular Automata-based simulation of laser dynamics using dynamic load balancing. In: First International Workshop on Parallel Architectures and Bioinspired Algorithms. ISBN 9788469165126. pp. 49-55.
M. B. N. Kouwenhoven, A. G. A. Brown, S. P. Goodwin, S. F. Portegies Zwart, and L. Kaper. Pairing mechanisms for binary stars. Astronomische Nachrichten 329(9-10), pp. 984-987.
M. Malawski, J. Kocot, E. Ciepiela, and M. Bubak. Optimization of application execution in the ViroLab Virtual Laboratory. In: Cracow'07 Grid Workshop: October 15-17, 2007 Cracow, Poland: proceedings. ISBN 9788391514191. pp. 65-70.
M. Malawski, J. Kocot, I. Ryszka, M. Bubak, M. Wieczorek, and T. Fahringer. Optimization of application execution in the GridSpace environment.
M. Malawski, J. Kocot, I. Ryszka, M. Bubak, and M. Wieczorek. Optimization of application execution in the GridSpace environment. In: Integrated research in grid computing. ISBN 9789605242602. pp. 395-405.
N. T. Faber, C. M. Boily, and S. F. Portegies Zwart. On time-dependent orbital complexity in gravitational N-body simulations. Monthly Notices of the Royal Astronomical Society 386(1), pp. 425-439.
E. Gaburov, A. Gualandris, and S. Portegies Zwart. On the onset of runaway stellar collisions in dense star clusters: I. Dynamics of the first collision. Monthly Notices of the Royal Astronomical Society 384(1), pp. 376-385.
L. R. Yungelson, E. P. J. van den Heuvel, J. S. Vink, S. F. Portegies Zwart, and A. de Koter. On the evolution and fate of super-massive stars. Astronomy & Astrophysics 477(1), pp. 223-237.
W. Funika, M. Zientarski, R. M. Badia, J. Labarta, and M. Bubak. OCM2PRV: performance visualization of Grid applications based on OCM-G and Paraver. In: Integrated research in grid computing. ISBN 9789605242602. pp. 87-98.
L. Y. L. Muller. Multi-touch displays: design, applications and performance evaluation. Supervised by R. G. Belleman.
P. Sloot, P. Coveney, M. T. Bubak, A.-M. Vandamme, B. Ó Nualláin, D. van de Vijver, and C. Boucher. Multi-science decision support for HIV drug resistance treatment. Studies in Health Technology and Informatics 138, pp. 188-198.
B. Balis, M. Bubak, and B. Łabno. Monitoring of Grid scientific workflows. Scientific Programming 16(2-3), pp. 205-216.
J. A. Kaandorp, J. G. Blom, J. Verhoef, M. Filatov, M. Postma, and W. E. G. Müller. Modelling genetic regulation of growth and form in a branching sponge. Proceedings of the Royal Society B-Biological Sciences 275(1651), pp. 2569-2575.
R. Quax. Modeling and Simulating the Propagation of Infectious Diseases Using Complex Networks. Supervised by David Bader.
E. Gaburov, J. C. jr. Lombardi, and S. Portegies Zwart. Mixing in massive stellar mergers. Monthly Notices of the Royal Astronomical Society. Letters 383(1), pp. L5-L9.
A. Sottoriva. Mathematical Modeling of Tumour Growth and Invasion Using a Hybrid Cellular Automaton. Supervised by P. M. A. Sloot and L. Vermeulen.
E. V. Zudilova-Seinstra. Making Virtual Reality Usable for Medical Specialists. In: In Book of Abstracts, D-CIS Human Factors Day. pp. 10-11.
B. Baliś, M. Bubak, and M. Wegiel. LGF: A flexible framework for exposing legacy codes as services. Future Generation Computer Systems 24(7), pp. 711-719.
T. Bartyński, M. Malawski, and M. Bubak. Invocation of Grid operations in the ViroLab Virtual Laboratory. In: Cracow'07 Grid Workshop: October 15-17, 2007 Cracow, Poland: proceedings. ISBN 9788391514191. pp. 59-64.
T. Szepieniec and M. Bubak. Investigation of the DAG eligible jobs maximization algorithm in a grid. In: Grid 2008: proceedings of the 2008 9th IEEE/ACM International Conference on Grid Computing: September 29th-October 1st, 2008, Tsukuba, Japan. ISBN 9781424425785. pp. 340-345.
A. Belloum, Z. Zhao, and M. Bubak. International Workshop on Applications of Workflows in Computational Science (AWCS 08). Lecture Notes in Computer Science 5103, pp. 459-462.
M. Assel, P. Nowakowski, and M. Bubak. Integrating and accessing medical data resources within the ViroLab Virtual Laboratory. Lecture Notes in Computer Science 5103, pp. 90-99.
V. V. Gvaramadze, A. Gualandris, and S. Portegies Zwart. Hyperfast pulsars as the remnants of massive stars ejected from young star clusters. Monthly Notices of the Royal Astronomical Society 385(2), pp. 929-938.
M. Malawski, T. Gubała, M. Kasztelnik, T. Bartynski, and M. Bubak. High-level scripting approach for building component-based applications on the Grid. In: Making grids work: Proceedings of the CoreGRID Workshop on Programming Models, Grid and P2P System Architecture, Grid Systems, Tools and Environments, 12-13 June 2007, Heraklion, Crete, Greece. ISBN 9780387784472. pp. 309-321.
R. G. Belleman, J. Bédorf, and S. F. Portegies Zwart. High performance direct gravitational N-body simulations on graphics processing units II: An implementation in CUDA. New Astronomy 13(2), pp. 103-112.
J. A. van Meel, A. Arnold, D. Frenkel, S. F. Portegies Zwart, and R. G. Belleman. Harvesting graphics power for MD simulations. Molecular Simulation 34(3), pp. 259-266.
K. Rycerz, M. Bubak, and P. M. A. Sloot. HLA component model on the example of multiscale simulation. In: Cracow'07 Grid Workshop: October 15-17, 2007 Cracow, Poland: proceedings. ISBN 9788391514191. pp. 272-275.
K. Rycerz, M. Bubak, P. M. A. Sloot, and V. Getov. HLA component based environment for distributed multiscale simulations.
K. Rycerz, M. Bubak, and P. M. A. Sloot. HLA component based environment for distributed multiscale simulations. In: From grids to service and pervasive computing. ISBN 9780387094540. pp. 229-239.
H.-C. Huang, A. Konagaya, V. Lanza, and P. M. A. Sloot. Guest Editorial Introduction to the Special Section on BioGrid: Biomedical Computations on the Grid. IEEE Transactions on Information Technology in Biomedicine 12(2), pp. 133-137.
A. Tirado-Ramos, P. M. A. Sloot, and M. Bubak. Grid­based interactive decision support in biomedicine. In: Grid computing for bioinformatics and computational biology. ISBN 9780471784098. pp. 225-246.
E. Ciepiela, J. Kocot, T. Gubala, M. Malawski, M. Kasztelnik, and M. Bubak. GridSpace Engine of the ViroLab Virtual Laboratory. In: Cracow'07 Grid Workshop: October 15-17, 2007 Cracow, Poland: proceedings. ISBN 9788391514191. pp. 53-58.
J. A. Kaandorp. Exploring Theoretical Morphospaces, Book review: The Geometry of Evolution: Adaptive Landscapes and Theoretical Morphospaces. George R. McGhee. BioScience 58, pp. 271-273.
A. Gualandris, S. Harfst, D. Merritt, and S. Mikkola. Evolution of stellar orbits in the galactic centre. Astronomische Nachrichten 329(9-10), pp. 1008-1011.
T. Szepieniec and M. Bubak. Evaluation of eligible jobs maximization algorithm for DAG scheduling in grids. Lecture Notes in Computer Science 5101, pp. 254-263.
W. Funika, D. Harężlak, D. Król, and M. Bubak. Environment for collaborative development and execution of Virtual Laboratory applications. Lecture Notes in Computer Science 5103, pp. 446-455.
J. B. W. Geerdink. Entropic and multiple relaxation time lattice Boltzmann methods compared for time harmonic flows. Supervised by A. G. Hoekstra.
B. Ó Nualláin, D. A. M. C. van de Vijver, C. A. B. Boucher, A. Tirado Ramos, and P. M. A. Sloot. Enhanced Decision Support for HIV Drug Resistance Interpretation. In: Proceedings of the 6th European HIV Drug Resistance Workshop.
S. L. Moll, R. de Grijs, P. Anders, P. A. Crowther, S. S. Larsen, L. J. Smith, and S. F. Portegies Zwart. Dynamical mass of a star cluster in M 83: A test of fibre-fed multi-object spectroscopy. Astronomy & Astrophysics 490(1), pp. 125-133.
Y. Demchenko, O. Mulmo, L. Gommans, C. de Laat, and A. Wan. Dynamic security context management in Grid-based applications. Future Generation Computer Systems 24(5), pp. 434-441.
K. Rycerz, M. Bubak, and P. M. A. Sloot. Dynamic interactions in HLA component model for multiscale simulations. Lecture Notes in Computer Science 5102, pp. 217-226.
K. J. Rycerz, P. M. A. Sloot, and M. T. Bubak. Dynamic Interactions in HLA Component Model for Multiscale Simulations. In: Computational Science - ICCS 2008: 8th International Conference, Krakow, Poland, Proceedings, Part II. ISBN 978-3-540-69386-4. Lecture Notes in Computer Science 5102, pp. 217-226.
D. Groen, S. Portegies Zwart, S. McMillan, and J. Makino. Distributed N-body simulation on the grid using dedicated hardware. New Astronomy 13(5), pp. 348-358.
M. Kasztelnik, T. Gubała, M. Malawski, and M. Bubak. Development and execution of collaborative application on the ViroLab virtual laboratory. In: Cracow'07 Grid Workshop: October 15-17, 2007 Cracow, Poland: proceedings. ISBN 9788391514191. pp. 41-46.
M. Bubak, M. Turała, and K. Wiatr. Cracow'07 Grid Workshop: October 15-17, 2007 Cracow, Poland: proceedings. ISBN 9788391514191.
M. Bubak, G. D. van Albada, J. Dongarra, and P. M. A. Sloot. Computational science - ICCS 2008: 8th international conference, Kraków, Poland, June 23-25, 2008: Proceedings, part III. ISBN 9783540693888.
M. Bubak, G. D. van Albada, J. Dongarra, and P. M. A. Sloot. Computational science - ICCS 2008: 8th international conference, Kraków, Poland, June 23-25, 2008: Proceedings, part II. ISBN 9783540693864.
M. Bubak, G. D. van Albada, J. Dongarra, and P. M. A. Sloot. Computational science - ICCS 2008: 8th international conference, Kraków, Poland, June 23-25, 2008: Proceedings, part I. ISBN 9783540693833.

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