Source: http://www.fbb.msu.ru/doc/index.php?ID=204
Timestamp: 2019-04-18 23:07:24+00:00

Document:
RNASurface: fast and accurate detection of locally optimal potentially structured RNA segments.
Soldatov, R. A.; Vinogradova, S. V.; Mironov, A. A.
Structural basis for the regulatory function of a complex zinc-binding domain in a replicative arterivirus helicase resembling a nonsense-mediated mRNA decay helicase.
Deng, Z.; Lehmann, K. C.; Li, X.; Feng, C.; Wang, G.; Zhang, Q.; Qi, X.; Yu, L.; Zhang, X.; Feng, W.; Wu, W.; Gong, P.; Tao, Y.; Posthuma, C. C.; Snijder, E. J.; Gorbalenya, A. E.; Chen, Z.
Nucleic Acids Res. 2013 Dec 24.
Thiamin-dependent enzymes: new perspectives from the interface between chemistry and biology.
Thiamin diphosphate-dependent enzymes: from enzymology to metabolic regulation, drug design and disease models.
Bunik, V. I.; Tylicki, A.; Lukashev, N. V.
Genome sequence analysis indicates that the model eukaryote Nematostella vectensis harbors bacterial consorts.
Artamonova, I. I.; Mushegian, A. R.
Appl Environ Microbiol. 2013 Nov;79(22):6868-73.
Dibrova, D. V.; Cherepanov, D. A.; Galperin, M. Y.; Skulachev, V. P.; Mulkidjanian, A. Y.
Biochim Biophys Acta. 2013 Nov-Dec;1827(11-12):1407-27.
Aptamer RA36 inhibits of human, rabbit, and rat plasma coagulation activated with thrombin or snake venom coagulases.
Savchik, E. Y.; Kalinina, T. B.; Drozd, N. N.; Makarov, V. A.; Zav'yalova, E. G.; Lapsheva, E. N.; Mudrik, N. N.; Babij, A. V.; Pavlova, G. V.; Golovin, A. V.; Kopylov, A. M.
Bull Exp Biol Med. 2013 Nov;156(1):44-8.
Polyreactive monoclonal autoantibodies in multiple sclerosis: functional selection from phage display library and characterization by deep sequencing analysis.
Lomakin, Y. A.; Zakharova, M. Y.; Belogurov, A. A.; Bykova, N. A.; Dronina, M. A.; Tupikin, A. E.; Knorre, V. D.; Boyko, A. N.; Favorov, A. V.; Kabilov, M. R.; Ponomarenko, N. A.; Gabibov, G.
Effect of poly(phosphate) anions on glyceraldehyde-3-phosphate dehydrogenase structure and thermal aggregation: comparison with influence of poly(sulfoanions).
Semenyuk, P. I.; Muronetz, V. I.; Haertle, T.; Izumrudov, V. A.
Biochim Biophys Acta. 2013 Oct;1830(10):4800-5.
Minimal genome encoding proteins with constrained amino acid repertoire.
Tsoy, O.; Yurieva, M.; Kucharavy, A.; O'Reilly, M.; Mushegian, A.
Nucleic Acids Res. 2013 Oct;41(18):8444-51.
Paratrypanosoma is a novel early-branching trypanosomatid.
Flegontov, P.; Votypka, J.; Skalicky, T.; Logacheva, M. D.; Penin, A. A.; Tanifuji, G.; Onodera, N. T.; Kondrashov, A. S.; Volf, P.; Archibald, J. M.; Lukes, J.
Curr Biol. 2013 Sep 23;23(18):1787-93.
Short indels are subject to insertion-biased gene conversion.
Leushkin, E. V.; Bazykin, G. A.
Functional implications of splicing polymorphisms in the human genome.
Kurmangaliyev, Y. Z.; Sutormin, R. A.; Naumenko, S. A.; Bazykin, G. A.; Gelfand, M. S.
Hum Mol Genet. 2013 Sep 1;22(17):3449-59.
Role of charge screening and delocalization for lipophilic cation permeability of model and mitochondrial membranes.
Derivatives of the cationic plant alkaloids berberine and palmatine amplify protonophorous activity of fatty acids in model membranes and mitochondria.
Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga.
Flot, J. F.; Hespeels, B.; Li, X.; Noel, B.; Arkhipova, I.; Danchin, E. G.; Hejnol, A.; Henrissat, B.; Koszul, R.; Aury, J. M.; Barbe, V.; Barthelemy, R. M.; Bast, J.; Bazykin, G. A.; Chabrol, O.; Couloux, A.; Da Rocha, M.; Da Silva, C.; Gladyshev, E.; Gouret, P.; Hallatschek, O.; Hecox-Lea, B.; Labadie, K.; Lejeune, B.; Piskurek, O.; Poulain, J.; Rodriguez, F.; Ryan, J. F.; Vakhrusheva, O. A.; Wajnberg, E.; Wirth, B.; Yushenova, I.; Kellis, M.; Kondrashov, A. S.; Mark Welch, D. B.; Pontarotti, P.; Weissenbach, J.; Wincker, P.; Jaillon, O.; Van Doninck, K.
Protective effect of mitochondria-targeted antioxidants in an acute bacterial infection.
Plotnikov, E. Y.; Morosanova, M. A.; Pevzner, I. B.; Zorova, L. D.; Manskikh, V. N.; Pulkova, N. V.; Galkina, S. I.; Skulachev, V. P.; Zorov, D. B.
Proc Natl Acad Sci U S A. 2013 Aug 13;110(33):E3100-8.
Structure-based design of small-molecule ligands of phosphofructokinase-2 activating or inhibiting glycolysis.
Pyrkov, T. V.; Sevostyanova, I. A.; Schmalhausen, E. V.; Shkoporov, A. N.; Vinnik, A. A.; Muronetz, V. I.; Severin, F. F.; Fedichev, P. O.
Leushkin, E. V.; Sutormin, R. A.; Nabieva, E. R.; Penin, A. A.; Kondrashov, A. S.; Logacheva, M. D.
BMC Genomics. 2013 Jul 15;14(1):476.
Gilleron, J.; Querbes, W.; Zeigerer, A.; Borodovsky, A.; Marsico, G.; Schubert, U.; Manygoats, K.; Seifert, S.; Andree, C.; Stoter, M.; Epstein-Barash, H.; Zhang, L.; Koteliansky, V.; Fitzgerald, K.; Fava, E.; Bickle, M.; Kalaidzidis, Y.; Akinc, A.; Maier, M.; Zerial, M.
In search of novel highly active mitochondria-targeted antioxidants: thymoquinone and its cationic derivatives.
Severina, I. I.; Severin, F. F.; Korshunova, G. A.; Sumbatyan, N. V.; Ilyasova, T. M.; Simonyan, R. A.; Rogov, A. G.; Trendeleva, T. A.; Zvyagilskaya, R. A.; Dugina, V. B.; Domnina, L. V.; Fetisova, E. K.; Lyamzaev, K. G.; Vyssokikh, M. Y.; Chernyak, B. V.; Skulachev, M. V.; Skulachev, V. P.; Sadovnichii, V. A.
FEBS Lett. 2013 Jun 27;587(13):2018-24.
Bykova, N. A.; Favorov, A. V.; Mironov, A. A.
PLoS One. 2013 Jun 7;8(6):e65012.
Electrogenic proton transport across lipid bilayer membranes mediated by cationic derivatives of rhodamine 19: comparison with anionic protonophores.
Rokitskaya, T. I.; Ilyasova, T. M.; Severina, I. I.; Antonenko, Y. N.; Skulachev, V. P.
Eur Biophys J. 2013 Jun;42(6):477-85.
Gordienko, E. N.; Kazanov, M. D.; Gelfand, M. S.
Prevalence of multinucleotide replacements in evolution of primates and Drosophila.
Terekhanova, N. V.; Bazykin, G. A.; Neverov, A.; Kondrashov, A. S.; Seplyarskiy, V. B.
Mol Biol Evol. 2013 Jun;30(6):1315-25.
RegTransBase--a database of regulatory sequences and interactions based on literature: a resource for investigating transcriptional regulation in prokaryotes.
Cipriano, M. J.; Novichkov, P. N.; Kazakov, A. E.; Rodionov, D. A.; Arkin, A. P.; Gelfand, M. S.; Dubchak, I.
BMC Genomics. 2013 Apr 2;14:213.
Collateral presentation of antigens as physiological prototype for lymph node metastases.
Manskikh, V. N.; Perelmuter, V. M.
[Statistical methods of comparative genomic analysis based on diffusion processes].
Soldatov, R. A.; Mironov, A. A.
Evolution of cell division: from shear mechanics to complex molecular machineries.
Koonin, E. V.; Mulkidjanian, A. Y.
Korobov, M. V.; Volkov, D. S.; Avramenko, N. V.; Belyaeva, L. A.; Semenyuk, P. I.; Proskurnin, M. A.
Intron-centric estimation of alternative splicing from RNA-seq data.
Pervouchine, D. D.; Knowles, D. G.; Guigo, R.
Molecular modeling of different substrate-binding modes and their role in penicillin acylase catalysis.
Novikov, F. N.; Stroganov, O. V.; Khaliullin, I. G.; Panin, N. V.; Shapovalova, I. V.; Chilov, G. G.; Svedas, V. K.
Genome-Level Analysis of Selective Constraint without Apparent Sequence Conservation.
Vakhrusheva, O. A.; Bazykin, G. A.; Kondrashov, A. S.
Strong mutational bias toward deletions in the Drosophila melanogaster genome is compensated by selection.
Davydov, I. I.; Wohlgemuth, I.; Artamonova, I. I.; Urlaub, H.; Tonevitsky, A. G.; Rodnina, M. V.
NPIDB: Nucleic acid-Protein Interaction DataBase.
Kirsanov, D. D.; Zanegina, O. N.; Aksianov, E. A.; Spirin, S. A.; Karyagina, A. S.; Alexeevski, A. V.
Nucleic Acids Res. 2013 Jan;41(Database issue):D517-23.
Fantin, Y. S.; Neverov, A. D.; Favorov, A. V.; Alvarez-Figueroa, M. V.; Braslavskaya, S. I.; Gordukova, M. A.; Karandashova, I. V.; Kuleshov, K. V.; Myznikova, A. I.; Polishchuk, M. S.; Reshetov, D. A.; Voiciehovskaya, Y. A.; Mironov, A. A.; Chulanov, V. P.

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