Source: https://publications.computationalscience.nl/page/5/
Timestamp: 2019-04-25 06:50:24+00:00

Document:
S. Koulouzis, E. Zudilova-Seinstra, and A. Belloum. Data transport between visualization web services for medical image analysis. Procedia Computer Science 1/1, pp. 1721-1730.
P. M. A. Sloot. Computational science: A kaleidoscopic view into science. Journal of Computational Science 1(4), p. 189.
S. Mei, P. M. A. Sloot, R. Quax, Y. Zhu, and W. Wang. Complex agent networks explaining the HIV epidemic among homosexual men in Amsterdam. Mathematics and Computers in Simulation 80(5), pp. 1018-1030.
D. Frentz, C. A. B. Boucher, M. Assel, A. De Luca, M. Fabbiani, F. Incardona, P. Libin, N. Manca, V. Müller, B. Ó Nualláin, R. Paredes, M. Prosperi, E. Quiros-Roldan, L. Ruiz, and P. M. A. Sloot. Comparison of HIV-1 genotypic resistance test interpretation systems in predicting virological outcomes over time. PLoS One 5(7), p. e11505.
A. Sottoriva, J. J. C. Verhoeff, T. Borovski, S. K. McWeeney, L. Naumov, J. P. Medema, P. M. A. Sloot, and L. Vermeulen. Cancer stem cell tumor model reveals invasive morphology and increased phenotypical heterogeneity. Cancer Research 70(1), pp. 46-56.
T. Wood. Applications of GPUs in Computational Finance. Supervised by R. G. Belleman and B. D. Kandhai.
M. C. F. Prosperi, M. Rosen-Zvi, A. Altman, M. Zazzi, S. Di Giambenedetto, R. Kaiser, E. Schülter, D. Struck, P. Sloot, D. A. van de Vijver, A.-M. Vandamme, and A. Sönnerborg. Antiretroviral therapy optimisation without genotype resistance testing: a perspective on treatment history based models. PLoS One 5(10), p. e13753.
D. Botman and J. A. Kaandorp. An integrated approach to infer and model the gene network in early development of the cnidarian Nematostella vectensis. In: Euro ISRS symposium 2010: Reefs in a changing environment. ISBN 9789085858973. p. 62.
P. Bellavista, R.-S. Chang, H.-C. Chao, S.-F. Lin, and P. M. A. Sloot. Advances in Grid and Pervasive Computing: 5th International Conference, GPC 2010, Hualien, Taiwan, May 10-13, 2010: Proceedings. ISBN 9783642130663.
D. Groen, S. Rieder, P. Grosso, C. de Laat, and S. Portegies Zwart. A platform independent communication library for distributed computing. Procedia Computer Science 1, pp. 2693-2700.
F. Berretz, S. Skorupa, A. S. Z. Belloum, B. Schuller, and V. Sander. A novel approach to Workflow Management in Grid Environments. In: 5th EGEE User Forum: Monday 12 April 2010-Friday 16 April 2010, Uppsala University: book of abstracts. pp. 99-100.
M Gerhards, A. Belloum, F. Berretz, V. Sander, and S. Skorupa. A history-tracing XML-based provenance framework for workflows. Workshop on Workflows in Support of Large-Scale Science .
M. V. Filatov, J. A. Kaandorp, M. Postma, R. van Liere, K. J. Kruszyński, M. J. A. Vermeij, G. J. Streekstra, and R. P. M. Bak. A comparison between coral colonies of the genus Madracis and simulated forms. Proceedings of the Royal Society B-Biological Sciences 277(1700), pp. 3555-3561.
J. Daub. A cell-based model of extracellular-matrix-guided endothelial cell migration during angiogenesis. Supervised by R. M. H. Merks and J. A. Kaandorp.
J. J. van der Ham. A Semantic Model for Complex Computer Networks: The Network Description Language. ISBN 978-90-814160-2-3. Supervised by P. M. A. Sloot and C. T. A. M. de Laat.
N. Graf, A. Hoppe, E. Georgiadi, R. Belleman, C. Desmedt, D. Dionysiou, M. Erdt, J. Jacques, E. Kolokotroni, A. Lunzer, M. Tsiknakis, and G. Stamatakos. ‘In silico' oncology for clinical decision making in the context of nephroblastoma. Klinische Pädiatrie 221(3), pp. 141-149.
M. Bubak, M. Malawski, T. Gubala, M. Kasztelnik, P. Nowakowski, D. Harezlak, T. Bartynski, J. Kocot, E. Ciepiela, W. Funika, D. Krol, B. Balis, M. Assel, and A. Tirado-Ramos. Virtual Laboratory for Collaborative Applications. In: Handbook of research on computational grid technologies for life sciences, biomedicine, and healthcare. ISBN 9781605663746. pp. 531-551.
R. J. Allison, S. P. Goodwin, R. J. Parker, S. F. Portegies Zwart, R. de Grijs, and M. B. N. Kouwenhoven. Using the minimum spanning tree to trace mass segregation. Monthly Notices of the Royal Astronomical Society 395(3), pp. 1449-1454.
E. Zudilova-Seinstra, T. Adriaansen, and R. van Liere. Trends in interactive visualization: State-of-the-art survey. ISBN 9781848002685.
A. Caiazzo, D. Evans, J.-L. Falcone, J. Hegewald, E. Lorenz, B. Stahl, D. Wang, J. Bernsdorf, B. Chopard, J. Gunn, R. Hose, M. Krafczyk, P. Lawford, R. Smallwood, and D. Walker. Towards a Complex Automata multiscale model of in-stent restenosis. Lecture Notes in Computer Science 5544, pp. 705-714.
G. de Marchi, F. Paresce, and S. F. Portegies Zwart. Time Evolution of the Stellar Mass Function of Galactic Clusters. In: American Astronomical Society Meeting #213, #442.06 Abstracts. American Astronomical Society Meeting Abstracts 41, p. 320.
J. Meizner, M. Malawski, S. Naqvi, and M. Bubak. Threat model for MOCCA component environment. In: Cracow'08 Grid Workshop: October 13-15, 2008 Cracow, Poland: proceedings. ISBN 9788361433002. pp. 94-102.
A. Tirado-Ramos and A. Shiflet. Third Workshop on Teaching Computational Science (WTCS 2009). Lecture Notes in Computer Science 5545, pp. 3-4.
S. F. Portegies Zwart. The lost siblings of the Sun. Astrophysical Journal Letters 696(1), pp. L13-L16.
J. C. A. Miller-Jones, P. G. Jonker, G. Nelemans, S. Portegies Zwart, V. Dhawan, W. Brisken, E. Gallo, and M. P. Rupen. The formation of the black hole in the X-ray binary system V404 Cyg. Monthly Notices of the Royal Astronomical Society 394(3), pp. 1440-1448.
E. Glebbeek, E. Gaburov, S. E. de Mink, O. R. Pols, and S. F. Portegies Zwart. The evolution of runaway stellar collision products. Astronomy & Astrophysics 497(1), pp. 255-264.
G. S. Cook, R. G. Belleman, M. Scarpa, and C. T. A. M. de Laat. The Cook Report on Internet Protocol on WiVR: a Window into Virtual Reality.
G. S. Cook, R. G. Belleman, R. J. Strijkers, M. L. Cristea, R. J. Meijer, and C. T. A. M. de Laat. The Cook Report on Internet Protocol on Interactive Networks (A User Interface for Appliction Owned Lightpath Networks).
M. Ashyraliyev, Y. Fomekong-Nanfack, J. A. Kaandorp, and J. G. Blom. Systems biology: parameter estimation for biochemical models. The FEBS Journal 276(4), pp. 886-902.
J. Kitowski, M. Tura\la, K. Wiatr, M. T. Bubak, A. Kusznir, J. Niwicki, T. Szepieniec, M. Radecki, A. Ozieblo, Z. Mosurska, A. Szymańska, K. Krawentek, and et al.. Structure and status of National Grid Initiative in Poland. In: Cracow'08 Grid Workshop: October 13-15, 2008 Cracow, Poland: proceedings. ISBN 978-83-61433-00-2. pp. 39-51.
J. Vidal Rodriguez. Stochasticity in signal transduction pathways. ISBN 9789090247397. Supervised by P. M. A. Sloot and J. A. Kaandorp.
L. Smarr, M. Brown, and C. de Laat. Special section: OptIPlanet - The OptIPuter global collaboratory. Future Generation Computer Systems 25(2), pp. 109-113.
R. Quax, D. A. Bader, and P. M. A. Sloot. Simulating individual-based models of epidemics in hierarchical networks. Lecture Notes in Computer Science 5544, pp. 725-734.
J. Cui, J. A. Kaandorp, O. O. Ositelu, V. Beaudry, A. Knight, Y. F. Nanfack, and K. W. Cunningham. Simulating calcium influx and free calcium concentrations in yeast. Cell Calcium 45(2), pp. 123-132.
T. Gubala, M. Bubak, and P. M. A. Sloot. Semantic Integration for Research Environments. In: Handbook of research on computational grid technologies for life sciences, biomedicine, and healthcare. ISBN 9781605663746. pp. 514-530.
E. Gaburov, S. Harfst, and S. Portegies Zwart. SAPPORO: A way to turn your graphics cards into a GRAPE-6. New Astronomy 14(7), pp. 630-637.
P. Bar, C. Coti, D. Groen, T. Herault, V. Kravtsov, A Schuster, and M. Swain. Running parallel applications with topology-aware grid middleware. In: Proceedings of the 2009 Fifth IEEE International Conference on e-Science. ISBN 9780769538778. pp. 292-299.
E. V. Zudilova-Seinstra, T. Adriaansen, and R. van Liere. Overview of interactive visualization. In: Trends in interactive visualization. ISBN 9781848002685. pp. 3-15.
D. Groen, S. Harfst, and S. Portegies Zwart. On the origin of grid species: The living application. Lecture Notes in Computer Science 5544, pp. 205-212.
S. S. Msanjila. On inter-organizational trust engineering in networked collaborations: modeling and management of rational trust. ISBN 978-90-5776-196-6. Supervised by P. M. A. Sloot and H. Afsarmanesh.
N. Zarrabi. Modeling and Simulation of HIV-1 Intracellular Replication. Supervised by P. M. A. Sloot.
M. Postma and P. J. M. van Haastert. Mathematics of experimentally generated chemoattractant gradients. In: Chemotaxis: methods and protocols. ISBN 9781607611974. pp. 473-488.
J. Cui. Mathematical modeling of metal ion homeostasis and signaling systems. ISBN 9789088910883. Supervised by P. M. A. Sloot and J. A. Kaandorp.
R. J. Strijkers, L. Muller, M. L. Cristea, R. Belleman, C. de Laat, P. Sloot, and R. Meijer. Interactive control over a programmable computer network using a multi-touch surface. Lecture Notes in Computer Science 5545, pp. 719-728.
A. Z. \"Ozsoy. Interactive Visualization of Large Medical Datasets on the Grid. Supervised by R. G. Belleman.
F. I. Rusadi. Interactive Visualization of Graphs on Multiple Levels of Detail Using a Direct-Touch Interactive Graphics Device. Supervised by R. G. Belleman.
R. J. Strijkers, L. Y. L. Muller, M. L. Cristea, R. G. Belleman, C. T. A. M. de Laat, P. M. A. Sloot, and R. J. Meijer. Interactive Control over a Programmable Computer Network Using a Multi-touch Surface. In: Computational Science - ICCS 2009: 9th International Conference, Baton Rouge, LA, USA, Proceedings, Part II. ISBN 978-3-642-01972-2. Lecture Notes in Computer Science 5545, pp. 719-728.
Y. Fomekong-Nanfack, M. Postma, and J. A. Kaandorp. Inferring Drosophila gap gene regulatory network: Pattern analysis of simulated gene expression profiles and stability analysis. BMC Research Notes 2, p. 256.
Y. Fomekong-Nanfack, M. Postma, and J. A. Kaandorp. Inferring Drosophila gap gene regulatory network: A parameter sensitivity and perturbation analysis. BMC Systems Biology 3, p. 94.
A. Suinesiaputra, P. J. de Koning, E. V. Zudilova-Seinstra, J. H. C. Reiber, and R. J. van der Geest. In vivo validations of 3D tubular NURBS fitting model applied on severe stenotic and high curvature MRA of carotid arteries. In: ESMRMB Congress.
V. V. Korkhov. Hierarchical resource management in grid computing. ISBN 9789057761898. Supervised by P. M. A. Sloot and A. S. Z. Belloum.
P. M. A. Sloot, P. V. Coveney, G. Ertaylan, V. Müller, C. A. Boucher, and M. Bubak. HIV decision support: From molecule to man. Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences 367(1898), pp. 2691-2703.
A. Bossenbroek, A. Tirado-Ramos, and P. M. A. Sloot. Grid resource allocation by means of option contracts. IEEE Systems Journal 3(1), pp. 49-64.
F. Dijkstra. Framework for path finding in multi-layer transport networks. ISBN 978-90-814160-1-6. Supervised by P. M. A. Sloot and C. T. A. M. de Laat.
M. B. N. Kouwenhoven, A. G. A. Brown, S. P. Goodwin, S. F. Portegies Zwart, and L. Kaper. Exploring the consequences of pairing algorithms for binary stars. Astronomy & Astrophysics 493(3), pp. 979-1016.
E. V. Zudilova-Seinstra, P. M. A. Sloot, P. J. H. de Koning, A. Suinesiaputra, R. J. van der Geest, and J. H. C. Reiber. Exploring 2D/3D input techniques for medical image analysis. In: International Conference on Information Visualisation, track Biomedical Visualization (MediViz09), Barcelona, Spain. ISBN 9780769537344. pp. 147-152.
B. W. van Schooten, E. M. A. G. van Dijk, E. V. Zudilova-Seinstra, P. J. H. de Koning, and J. H. C. Reiber. Evaluating visualisation and navigation techniques for interpretation of MRA data. In: VISIGRAPP 2009, International Joint Conference on Computer Vision, Imaging and Computer Graphics Theory and Applications, 5-8 Feb 2009, Lisbon, Portugal. ISBN 9789898111746. pp. 405-408.
B. W. van Schooten, E. M. A. G. van Dijk, E. V. Zudilova-Seinstra, P. J. H. de Koning, and J. H. C. Reiber. Evaluating Visualization and Navigation Techniques for Interpretation of MRA Data. In: International Conference on Computer Graphics Theory and Applications (GRAPP 2009). pp. 405-408.
T. Bartyński, M. Bubak, T. Gubała, D. Harężlak, M. Kasztelnik, J. Kocot, and P. Nowakowski. Environment for collaborative e-science applications: CGW08 tutorial. In: Cracow'08 Grid Workshop: October 13-15, 2008 Cracow, Poland: proceedings. ISBN 9788361433002. pp. 58-60.
P. M. A. Sloot. Crisis computing: beslissingsondersteuning in een complexe wereld. Magazine Nationale Veiligheid en Crisisbeheersing 7(8), pp. 62-63.
M. Bubak, M. Turała, and K. Wiatr. Cracow '08 Grid Workshop, October 13-15, 2008, Cracow, Poland: proceedings. ISBN 9788361433002.
G. Allen, J. Nabrzyski, E. Seidel, G. D. van Albada, P. M. A. Sloot, and J. Dongarra. Computational science - ICCS 2009: 9th International Conference Baton Rouge, LA, USA, May 25-27, 2009: proceedings. ISBN 9783642019692.
J. Kroc and P. M. A. Sloot. Complex systems modeling by cellular automata. In: Encyclopedia of artificial intelligence. ISBN 9781599048499. pp. 353-360.
J. Cui, J. A. Kaandorp, P. M. A. Sloot, C. M. Lloyd, and M. V. Filatov. Calcium homeostasis and signaling in yeast cells and cardiac myocytes. FEMS Yeast Research 9(8), pp. 1137-1147.
W. Rząsa and M. Bubak. Application of Petri nets to evaluation of Grid applications efficiency. In: Cracow '08 Grid Workshop: October 13-15, 2008 Cracow, Poland: proceedings. ISBN 9788361433002. pp. 261-269.
M. T. Bubak, T. Gubala, M. Malawski, B. Baliś, W. Funika, T. Bartynski, E. Ciepiela, D. Harezlak, M. Kasztelnik, J. Kocot, D. Król, P. Nowakowski, M. Pelczar, and M. Assel. A platform for collaborative e-science applications. In: KU KDM 2009: druga konferencja uytkownikw komputerw duej mocy: Zakopane, March 1213, 2009: abstracts. pp. 7-9.
L. Caroprese, P. M. A. Sloot, B. Ó Nualláin, and E. Zumpano. A logical framework for detecting anomalies in drug resistance algorithms. In: Proceedings of IDEAS'09. ISBN 9781605584027. pp. 23-30.
A. S. Z. Belloum. A grid-enabled workflow management system for e-Science. issue 147: iSGTW international science Grid This Week .
M. Assel, D. van de Vijver, P. Libin, K. Theys, D. Harezlak, B. Ó Nualláin, P. Nowakowski, M. Bubak, A.-M. Vandamme, S. Imbrechts, R. Sangeda, T. Jiang, D. Frentz, and P. Sloot. A collaborative environment allowing clinical investigations on integrated biomedical databases. Studies in Health Technology and Informatics 147, pp. 51-61.
A. Bossenbroek. A Numerical Approach to Bonus-Malus Executive Compensation Plans. Supervised by B. D. Kandhai, D. R. Fokkema, and B. Bosma.

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