Patent Abstract:
a synthetic or recombinant polypeptide displaying the antigenicity of the 42 kda rhoptry - associated protein of p . falciparum or an antigenic fragment thereof , and recombinant dna molecules , vectors and host cells for the expression thereof .

Detailed Description:
there is considerable confusion in the literature as to the identity of the p . falciparum rap - 1 and rap - 2 proteins and to their relationship . part of this appears to be due to the number of proteins reported to be in the rhoptries which have a size of approximately 80 kda or 42 kda ; the propensity of some malarial proteins to be extracted as a series of proteolytically cleaved fragments and the coincidence that rap - 1 is approximately twice the size of rap - 2 , prompting perrin & amp ; dayal ( 1982 ) to suggest that rap - 1 may be a dimer of rap - 2 . the rap - 1 protein is almost always isolated as a series of related bands which have apparently been produced by proteolysis of the parent molecule ( perrin et al ., 1985 , schofield et al ., 1986 , clark et al ., 1987 , bushell et al ., 1988 , ridley et al ., 1990a ). several authors have suggested that rap - 2 may also be a cleavage product of rap - 1 . for example , ridley et al ., ( 1990a ) found that purified rap - 1 decomposed to give rise to a protein of approximately the same size as rap - 2 , reinforcing this view . since the rap - 1 and rap - 2 proteins are closely associated in non - ionic detergent extracts of parasites , antibodies directed against rap - 1 or rap - 2 immunoprecipitate both proteins . however , antibodies only react with rap - 1 or rap - 2 by western blotting ( bushell et al ., 1988 ) or immunoprecipitate only rap - 1 or rap - 2 from sds dissociated proteins ( clark et al ., 1987 ), showing that the two are antigenically distinct . bushell et al ., ( 1988 ) presented data from peptide mapping to show that rap - 1 and its proteolytic cleavage products were unrelated to rap - 2 . this conclusion is confirmed by the data presented herein which show that rap - 1 and rap - 2 are different proteins coded by separate genes . comparison of the sequences show that these proteins are quite different : no significant homology exists between the dna or protein sequences . rap - 2 is considerably more basic than rap - 1 . however , both have a number of moderately hydrophobic domains which probably accounts for the difficulty in keeping purified rap - 1 , rap - 2 and their complex , qf3 , in solution in the absence of detergents such as sds ( data not shown ) and for the association of qf3 with membranous material apparently discharged from rhoptries ( bushell et al ., 1988 ). no significant homology was found between the rap - 2 protein and any protein sequence in the nbrf data bank , or by comparing the rap - 2 protein sequence with the nucleic acid sequences in the genbank data base , translated in all 6 reading frames . the rap - 2 used herein was derived from the qf3 complex . this was itself purified by immunoaffinity chromatography on monoclonal antibody 7h8 / 50 directed against rap - 1 . an amino acid sequence determined from a v8 protease fragment of the rap - 1 protein isolated during this procedure is contained within the rap - 1 sequence determined by ridley et al ., ( 1990a ). this conclusively demonstrates that the rap - 2 protein described in this paper and the rap - 1 protein described by ridley et al ., ( 1990a ) are the two components of the qf3 complex . this is important since several other proteins with sizes approximating rap - 1 and rap - 2 have been described in the rhoptries . braun - breton et al ., ( 1988 ) reported a membrane - associated , phospholipase c activated serine protease from merozoites . this protein was synthesized as an 83 kda protein which was processed to a 76 kda mature protein and was reported ( braun - breton et . al ., quoted in braun - breton et al ., 1988 ) as being anchored via a glycosylphosphatidylinositol ( gpi ) moiety . a monoclonal antibody , 31 c13 immunoprecipitates this protein and a smaller 41 kda protein . this monoclonal antibody also gives the punctate immunofluorescence pattern characteristic of rhoptries ( dayal et al ., 1986 ). in this earlier study , 31 c13 was reported to precipitate proteins of 82 kda , 69 kda , a doublet at 41 kda with several other proteins of lower abundance . this published immunoprecipitation pattern is indistinguishable from that reported for qf3 . however , neither rap - 1 nor rap - 2 have any homology with serine proteases and neither have the hydrophobic c terminal domain characteristic of other malarial and trypanosomal proteins anchored through a gpi moiety ( smythe et al ., 1988 ). these data suggest that rap - 1 and the 76 kda protease are not the same protein . there is a possibility that the 41 kda doublet immunoprecipitated with the protease by 31 c13 could be rap - 2 . while rap - 2 is clearly associated with rap - 1 in the qf3 complex , the data do not rule out the possibility that it may associate with other proteins . however , an alternative explanation is more likely . in addition to binding this membrane protease , 31 c13 has been reported as binding to the p . falciparum aldolase ( certa et al ., 1988 ) which also has a size of 41 kda . on the basis of the immunofluorescence patterns obtained for a series of monoclonal antibodies directed against the p . falciparum aldolase perrin et al ., ( 1985 ) and certa et al ., ( 1988 ) suggest that the aldolase is also in the rhoptries leading to the deduction that rap - 2 is the aldolase . the rhoptry location is surprising since aldolase is normally found in the cytoplasm of cells . unlike other rhoptry proteins , the aldolase has no signal peptide so it is not clear how it would be incorporated into the rhoptries . this reported rhoptry location is in contrast to the report by knapp et al . ( 1990 ) who report the aldolase present in the parasite cytoplasm . the sequence data obtained herein clearly show that rap - 2 is not aldolase . although the parasite aldolase shows no significant homology to rap - 2 , the possibility still remains that they may share , by chance , a common epitope . cross reactivity has been frequently observed with other malarial proteins ( saul et al ., 1989 ) and there are several tripeptides shared by both sequences which could form the basks of shared epitopes . the identity of the rap - 2 protein is important in interpreting the published vaccine studies in saimiri monkeys . perrin et al ., ( 1985 ) used a mixture of proteins purified on monoclonal antibodies 28 c11 directed against aldolase , 31 c13 directed against both the 82 kda protease and aldolase and 50 c11 which immunoprecipitates an 82 / 41 kda doublet located in the rhoptries which may be qf3 . one group of monkeys received the mixture of all the proteins recognized by these monoclonal antibodies . a second group received a mixture of just the 41 kda proteins . both groups of monkeys showed significant protection but the group receiving the total mixture had lower peak parasitaemias . a major component in the 41 kda mixture was aldolase . although monoclonal antibody 28 c12 inhibited parasite growth in vitro ( perrin et al ., 1981 ), in subsequent experiments , recombinant aldolase was ineffective in inducing protective immunity in saimiri monkeys ( herrera et al ., 1990 ). therefore it is likely that rap - 2 was the effective component of the 41 kda mixture . ridley et al ., ( 1990b ) vaccinated monkeys with a mixture of rap - 1 and rap - 2 . these monkeys showed significant protection when challenged . the pre - challenge sera from these monkeys western blotted both rap - 1 and rap - 2 showing that both proteins were immunogenic . ridley et al ., ( 1990a ) believed that rap - 2 was a proteolytic breakdown product of rap - 1 and therefore interpreted their data as evidence for the protective effect of rap - 1 . in view of the data presented herein , this needs to be re - evaluated . the cloning of rap - 1 by ridley et al ., ( 1990a ), and the present work on the cloning and expression of recombinant rap - 2 establishes the sequence of two of the major rhoptry proteins . they also provide the basis for preparing material to conclusively examine the role that these proteins may play in inducing protective immunity against p . falciparum in man . the lack of antigenic diversity found by mabs , as reflected in the lack of sequence polymorphism in the gene coding for rap - 2 , suggests that one of the major difficulties facing other malaria vaccine candidates may not be important for this protein . further features of the present invention , in particular the cloning and expression of the gene encoding the 42 kda rhoptry - associated protein ( rap - 2 ), are described in the following example and in the accompanying drawings . whilst one specific example of the cloning of the rap - 2 gene and of expression of recombinant rap - 2 is described in this example , it will be understood by persons skilled in this art that once the structure of the rap - 2 gene is known from the disclosure herein , the cloning and expression of this gene may be performed by many different techniques using different vectors and host cells which are well known in the art . accordingly , it will be understood that the present invention is not restricted to the particular techniques , vectors , host cells and the like which are described herein by way of example only . fig1 shows the restriction map and cloning strategy of the rap - 2 gene . restriction sites shown are those confirmed experimentally . bars represent the area encoded in each clone with thick line indicating the region sequenced . rap - 2 / 3 , 4 , 5 were generated from inverted pcr and the clones contain discontinuous regions . the splice site in these clones is indicated by the dotted line . fig2 shows expression of recombinant rap - 2 . transformed bacterial cells were grown in tryptone soya broth to an a 550 of 9 . 8 to 1 . 0 and induced with 2 mm β - isopropylthiogalactoside as described by st uber et . al ., ( 1990 ). after boiling in the presence of 5 % β - mercaptoethanol , sds solubilized protein from extracts of d10 schizonts or from induced bacterial cells transfected with the rap - 2 recombinant or expression plasmid alone were separated by sds page on 12 % polyacrylamide gels . gels were either ( a ) stained with coomassie blue or ( b ) transferred to nitrocellulose and probed with mab 3a9 / 48 as previously described ( bushell et . al ., 1988 ). position of the rap - 2 is indicated : on this 12 % gel system , rap - 2 has an apparent size of 35 kda , previous estimates of approximately 40 kda were based on 7 . 5 % polyacrylamide gels . ( a ) the nucleotide and deduced amino acid sequence of the rap - 2 clone ( seq id no : 19 ). ( b ) the polymorphism detected in the rap - 2 sequences of the d10 , 3d7 , hb3 and palo alto lines in the nucleotide and translated amino acid sequences ( seq id nos : 20 - 23 ). p . falciparum lines were grown in vitro in human red cells and 10 % serum ( trager and jensen , 1975 ). the following lines were used for immunofluorescence studies : d10 clone of fcq - 27 / png ( anders et al ., 1983 ); clone 3d7 of nf54 , clone hb3 of h1 , clone xcl10 from a cross of 3d7 and hb3 ( walliker et al ., 1987 ); palo alto ( chang et al ., 1988 ), malayan camp ( leech et al ., 1984 ); indochina 1 and fvo ( stanley et al ., 1985 ); clone itg2 ( mattei et al ., 1988 ); fcr3 ( hadley et al ., 1983 ); wellcome - liverpool ( holder & amp ; freeman , 1982 ); clone 7g8 ( burkot et al ., 1984 ), k1 ( thaitong & amp ; beale , 1981 ), v1 ( stahl et al ., 1985 ), clone t9 / 94 ( thaitong et al ., 1984 ). dna from d10 , 3d7 , hb3 and palo alto were used for sequencing the rap - 2 gene . the 5 mabs used in this study were 3a9 / 48 , 3d9 / 50 , 7h8 / 50 , 3e6 / 64 , 3h7 / 64 , with isotypes igg 1 , igg , 3 igg 2a , igg 2a and igg 2a , respectively . 3e4 / 64 and 3h7 / 64 were obtained from mice immunized with affinity purified qf3 crosslinked to bovine serum albumin with glutaraldehyde , the other mabs were from mice immunized with glutaraldehyde fixed schizonts of the fcq - 27 / png isolate . on immunoblots of nonreduced parasites , 3a9 / 48 , 3d9 / 50 , 3e6 / 64 and 3h7 / 64 recognize rap - 2 . 3a9 / 48 and 3d9 / 50 recognized the antigen on reduced blots . 7h8 / 50 recognizes rap - 1 . immunofluorescence assays were done on thin films of parasites , fixed for 10 min in acetone / methanol ( 90 : 10 v / v ) at - 20 ° c . as previously described ( bushell et al ., 1988 ). qf3 was purified by immunoaffinity chromatography using 7h8 / 50 and preparative electrophoresis then cleaved with staphylococcus aureus v8 protease as previously described ( bushell et al ., 1989 ). intact qf3 complex or the individual v8 cleaved peptides were electrophoresed using the discontinuous sds polyacrylamide system of moos et al ., ( 1988 ). following electrophoresis , the proteins were electrophoretically transferred to a polyvinyl difluoride membrane , stained with 0 . 1 % coomassie blue r250 in 50 % methanol for 5 min , destained for 10 min in 50 % methanol and washed with water . the stained bands were excised then sequenced in an applied biosystems model 470 sequencer . the polymerase chain reaction used to amplify rap - 2 gene fragments used the perkin elmer cetus gene amp kit according to the manufacturers instructions . forward primer [ pr1f : cgaattcaaatt ( a / g ) ta ( t / c ) ccnga , ( seq id no : 1 ) ( lower case indicates added restriction sites )] and reverse primer [ pr1r : gcaagctt ( a / t ) gc ( a / t ) gt ( a / g ) tgngc ( a / g ) ta ] ( seq id no : 2 ) were synthesised using a model 381 oligonucleotide synthesiser ( applied biosystems ) and used to amplify a 69 bp fragment ( 54 bp of malaria sequence and 15 bp of linker ). following the first amplification , the dna was electrophoresed on a 4 % nusieve agarose ( fmc bioproducts , me ., u . s . a . ), and the band corresponding to the expected size was excised , reamplified and cloned into m13mpl8 . it was sequenced using the dideoxy chain termination method with [ 35 s ] datp and klenow polymerase using standard techniques . this clone was used to probe southern blots of digested dna to produce a restriction map . on this map , the cloned sequence was contained within a 1 . 2 kb dra i fragment . the sequence from the rap2 / 1 . 1 clone to the 3 &# 39 ; end of this dra i fragment was amplified by ligating annealed double strand synthetic oligomer gtaaaacgacggccagt ( seq id no : 3 ) ( the m13 universal primer sequence ) to dra i restricted d10 dna ; size fractionating the ligated dna on 1 % agarose gel to remove excess oligomer , then amplifying this dna in a pcr with m13 sequencing primer and a primer derived from the unique sequence in rap - 2 / 1 . 1 , pr2f : gggaattcaaattctttgactggtt . ( seq id no : 4 ) initial attempts to clone eco ri digested dna into ecor1 / smai digested m13mpl8 and m13mpl9 dna failed but were successful following digestion of the amplified dna with hae iii which cuts within the m13 sequencing primer , to give clones in m13mpl8 ( rap2 / 2 . 1 ) and m13mpl9 ( rap2 . 2 / 2 ). a set of nested deletions were prepared using the exonuclease iii method of henikoff ( 1984 ). replicative form rap2 / 2 . 1 was prepared and digested with bam hi and pst i . a pst i site occurs within the rap - 2 sequence , however sufficient dna remained intact to enable a set of deletion clones to be prepared . these clones were sequenced using taq polymerase and abi 370 dna sequencer ( applied biosystems ) using the manufacturer &# 39 ; s protocol . the 5 &# 39 ; end of the dra i fragment was cloned into m13mpl8 and sequenced following amplification in an inverted pcr ( triglia et al ., 1989 ) using dna cut with dra i , ligated , then cut with ssp i ; ( seq id no : 5 ) and primers pr3r : gggaattcaacatgtgcagtgtg and pr3f : gggaattccagaaaacttcaaagc ( seq id no : 6 ) from the 5 &# 39 ; and 3 &# 39 ; regions of rap2 / 2 . 1 respectively . both the 5 &# 39 ; and 3 &# 39 ; ends and flanking regions of the rap - 2 gene were cloned and sequenced in further inverted pcr reactions . dna was digested with rsa i and religated . for the 5 &# 39 ; sequence , this dna was digested with sau 3a then amplified using primer pr3r above and pr5f : gggaattcatgttttgctagagcag ( seq id no : 7 ). for the 3 &# 39 ; sequence , the dna was digested with ssp i and amplified with primer pr3f above and pr6r : gggaattcgtgattttcatacatacc . ( seq id no : 8 ) both amplified dna fragments were digested with eco ri , cloned into m13mpl8 and sequenced . southern blots of chromosomes were prepared as previously described ( limbaiboon et al ., 1991 ). briefly , agarose embedded blocks of d10 , 3d7 and hb3 were prepared , iysed , and the chromosomes separated by pulse field gradient gel electrophoresis in 1 % agarose with a pulse time of 150 - 270 sec ( ramping ) at 100 v for 24 h , 270 secs at 100 v for 20 h and finally 999 sec at 60 v for 52 h . the dna was transferred to hybond - n membranes ( amersham ) then probed with labelled insert from rap2 / 2 . 1 . chromosomes are numbered according the decreasing mobility of the 3d7 clone and the identity of chromosomes in other isolates confirmed with a panel of chromosome specific probes . chromosome 5 on which the rap - 2 gene was located , hybridized to a probe containing part of the mesa gene ( coppel et al ., 1986 ). dna from d10 , hb3 , 3d7 and palo alto was amplified using primers catcacggatccaaaaaagagcaacaaaatggg ( seq id no : 9 ) and ctctagagtcgacttaaagaacaattaattctc ( seq id no : 10 ) corresponding to the n and c tenmini of the full length protein . the dna was cut with bam hi and sal i and cloned into bam hi / sal i cut m13mpl8 and m13mpl9 . several clones from each parasite line were sequenced to give the 5 &# 39 ; and 3 &# 39 ; ends of the corresponding genes . the amplified dna was digested with rsa i and cloned into m13mpl8 . several clones covering both orientations from each isolate were sequenced . dna from d10 and 3d7 was amplified using primers catcacggatccgataagtgtgaaactg ( seq id no : 11 ) corresponding to the n terminus of the mature protein and the c terminal primer used above . appropriately digested pcr amplification products were ligated into the bam hi / sal i site of the hexahis expression vector pds56 / rbsii , 6xhis ( st uber et . al ., 1990 ) and the resulting recombinants were subsequently transformed into e . coli sg13009 ( gottesmann et . al ., 1981 ). the host strain had been transformed previously with the laci - bearing plasmid , puha1 . the transformed bacterial cells were grown as described previously and the recombinant protein was expressed as an insoluble inclusion body . it was substantially purified (& gt ; 80 % pure ) by dissolving the cells in 6m guanidine hydrochloride , 0 . 1m sodium phosphate , ph 8 . 0 , followed by affinity chromatography on a nickel chelate column ( st uber et . al ., 1990 ). the recombinant protein eluted in a ph 4 . 5 buffer containing 6m guanidine hydrochloride , or a ph 4 . 9 buffer containing 8m urea . a higher purity could be obtained by first purifying the inclusion bodies , as follows . bacterial cells were resuspended in 24 % sucrose , a 0 . 75m guanidine hydrochloride , 0 . 1m sodium phosphate , ph 7 . 5 , and homogenised at 7000 psi with 6 passes through a martin - gaulin press . the homogenate was then centrifuged at 10 , 000 g for 15 minutes , and the pellet resuspended in 6m guanidine hydrochloride , 0 . 1m sodium phosphate , ph 7 . 0 , and chromatographed as described above . qf3 proteins isolated by immunoaffinity chromatography on monoclonal antibody 7h8 / 50 then subsequently separated by preparative sds / page were subjected to n terminal amino acid sequencing . rap - 1 and its major breakdown products failed to give any n terminal sequence . rap - 2 returned the sequence d / tkxete / a ( seq id no : 12 ) but with poor yield . extensive sequences were obtained by analyzing staphylococcus aureus v8 protease fragments derived from both rap - 1 and rap - 2 . the 40 kda v8 fragment of rap - 2 gave the sequence fsklypesnsltgliyahta . ( seq id no : 13 ) a 48 kda fragment of rap - 1 returned the sequence xmlynxpnnsnlfd . ( seq id no : 14 ) this corresponds to positions 348 - 361 of the predicted amino acid sequence of rap - 1 . this confirms that the 80 kda protean recognised by 7h8 / 50 is rap - 1 , and therefore the 42 kda protein discussed herein is part of the same complex studied by ridley et . al . ( 1990a ). pcr primers corresponding to the amino acid sequences klype ( seq id no : 15 ) and yahta ( seq id no : 16 ) were constructed and used to amplify a 54 base pair length of dna extracted from the p . falciparum parasite line d10 . the fragment was cloned ( clone rap2 / 1 . 1 in fig1 ) and sequenced . the intervening dna between the primer sequence coded for the expected amino acid sequence snsltgli ( seq id no : 17 ). southern blotting indicated that this sequence was contained within a 1 . 2 kb dra1 fragment . a synthetic , double stranded oligonucleotide corresponding to the m13 universal sequencing primer was ligated to 1 - 2 kb size selected , dra1 cut d10 dna . this was used as a template in the pcr reaction using primer derived from the 54 base pair original pcr amplified fragment and the m13 sequencing primer to amplify a 1 kb fragment of dna . this was cloned into eco ri / sma i digested m13 mpl8 ( rap - 2 / 2 . 1 ) and m13 mpl9 ( rap - 2 / 2 . 2 ) then sequenced . as shown in fig1 rap - 2 / 2 . 1 was sequenced through the use of a series of ordered deletion mutants generated using exonuclease iii ( henikoff , 1984 ). the sequence of the 5 &# 39 ; end of this dra1 fragment was completed using an inverted pcr ( triglia et . al ., 1988 ). this dra1 fragment had a single open reading frame but did not contain an initial atg codon characteristic of a start codon . the 3 &# 39 ; end of the clone ended with a taa codon which formed part of the dra1 cleavage site . the sequences of the flanking regions were obtained through the use of further inverted pcr reactions using rsa1 cut dna ( fig1 ). dna from the d10 and 3d7 clones of p . falciparum was amplified in a pcr and cloned into the hexahis vector pds56 / rbs11 to give a construct theoretically coding for the entire mature form of rap - 2 . e . coli transfected with this construct expressed a 42 kda protein when induced with iptg . this recombinant protein has a similar size to the native protein and reacted by immunoblotting with mab 3d9 / 50 directed against rap - 2 , providing further evidence that the cloned gene codes for rap - 2 ( fig2 ). the sequence of the rap - 2 gene from the d10 clone is shown in fig3 . the initial atg is preceded by an at rich region terminating in a sequence close to the transcription initiation consensus sequence observed in other malarial genes ( saul and battistutta , 1990 ). the coding region had a codon usage and a base bias similar to that of other malarial coding regions ( saul and battistutta , 1988 ). the rap - 2 gene was localised to chromosome 5 in the d10 , 3d7 and hb3 clones on southern blots of chromosomes separated by pulse - field gradient electrophoresis . it is located in a region with few 6 base restriction sites . restriction fragments obtained with bam hi , hind iii , pst i , kpn i , eco ri , eco rv and sal i were too large to be resolved on a 1 % agarose gel . a restriction map was prepared using dra i , ssp i , pst i , sau 3a i and rsa i alone and in combination . this was consistent with the position of the restriction sites determined by sequencing the cloned genes ( fig1 ). the cloned sequence codes for a protein of 398 amino acids . the protein commences with a sequence with the characteristics of a signal peptide . the sigseq1 program of folz et . al . ( 1986 ) predicts a cleavage occurring between glycine 21 and aspartic acid 22 resulting in a mature protein with an n terminal sequence of dkcete . ( seq id no : 18 ) this sequence closely matches the sequence ( d / tkxeta / e ) ( seq id no : 12 ) obtained in low abundance from the isolated native protein . we conclude that the mature protein contains 377 amino acids , with a calculated size of 44 , 487 da . this is in good agreement with the observed size of 42 kda by sds polyacrylamide gel electrophoresis . unlike many malarial proteins , the mature protein lacks repetitive elements and contains markedly hydrophobic domains ( fig4 ). ( kyte and doolittle , 1982 ) although none of these has the characteristics of a membrane spanning domain ( klein et . al ., 1985 ). the protein is quite basic with a calculated pi of 8 . 9 . using the sequence data of ridley et . al ., ( 1990a ) for rap - 1 , we calculate that the pi of rap - 1 is 6 . 9 and that of the qf3 complex is 8 . 2 . this is in agreement with the observed pi for this complex ( crewther et . al ., 1990 ). the mature protein contains 4 cysteines . at least 2 of these are disulfide bonded since there is a substantial shift in the electrophoretic mobility of rap - 2 in sds gels following treatment with reducing agents ( bushell et . al ., 1988 ). dna corresponding to the rap - 2 gene from p . falciparum clones d10 , 3d7 , hb3 and the monkey adapted isolate palo alto was amplified using a pcr reaction with primers corresponding to the first 6 amino acids of the signal sequence and the c terminal 5 amino acids . sequences of each of these fragments indicated that the rap - 2 gene shows little sequence variation between isolates ( fig3 ). the nucleotide sequences of hb3 and palo alto were identical . there were two base changes between hb3 and 3d7 , changing a ctt codon to tta but as both these code for leucine the predicted amino acid sequences of palo alto , 3d7 and hb3 are identical . the d10 sequence is different , with the 3 base changes between the hb3 sequence and that of d10 all giving amino acid substitutions . this lack of diversity is in keeping with the lack of antigenic diversity detected with mabs directed against rap - 2 . all 4 mabs reacted with all 16 parasite lines tested . in spite of this conservation between isolates of p . falciparum , when southern blots of the dna from the rodent malaria species , p . chabaudi , p . yoelii , p . berghei , and p . vinkei were probed with the 1 kb rap2 / 2 . 1 clone , no hybridizing band could be found even at modest stringency . anders , r . f ., brown , g . v . and edward , a . 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( 1987 ). science 236 : 1661 - 1666 . __________________________________________________________________________sequence listing ( 1 ) general information :( iii ) number of sequences : 23 ( 2 ) information for seq id no : 1 :( i ) sequence characteristics :( a ) length : 21 base pairs ( b ) type : nucleic acid ( c ) strandedness : single ( d ) topology : linear ( ii ) molecule type : dna ( genomic )( xi ) sequence description : seq id no : 1 : cgaattcaaattwtayccnga21 ( 2 ) information for seq id no : 2 :( i ) sequence characteristics :( a ) length : 23 base pairs ( b ) type : nucleic acid ( c ) strandedness : single ( d ) topology : linear ( ii ) molecule type : dna ( genomic )( xi ) sequence description : seq id no : 2 : gcaagcttwgcwgtrtgngcrta23 ( 2 ) information for seq id no : 3 :( i ) sequence characteristics :( a ) length : 17 base pairs ( b ) type : nucleic acid ( c ) strandedness : double ( d ) topology : linear ( ii ) molecule type : dna ( genomic )( xi ) sequence description : seq id no : 3 : gtaaaacgacggccagt17 ( 2 ) information for seq id no : 4 :( i ) sequence characteristics :( a ) length : 25 base pairs ( b ) type : nucleic acid ( c ) strandedness : single ( d ) topology : linear ( ii ) molecule type : dna ( genomic )( xi ) sequence description : seq id no : 4 : gggaattcaaattctttgactggtt25 ( 2 ) information for seq id no : 5 :( i ) sequence characteristics :( a ) length : 23 base pairs ( b ) type : nucleic acid ( c ) strandedness : single ( d ) topology : linear ( ii ) molecule type : dna ( genomic )( xi ) sequence description : seq id no : 5 : gggaattcaacatgtgcagtgtg23 ( 2 ) information for seq id no : 6 :( i ) sequence characteristics :( a ) length : 24 base pairs ( b ) type : nucleic acid ( c ) strandedness : single ( d ) topology : linear ( ii ) molecule type : dna ( genomic )( xi ) sequence description : seq id no : 6 : gggaattccagaaaacttcaaagc24 ( 2 ) information for seq id no : 7 :( i ) sequence characteristics :( a ) length : 25 base pairs ( b ) type : nucleic acid ( c ) strandedness : single ( d ) topology : linear ( ii ) molecule type : dna ( genomic )( xi ) sequence description : seq id no : 7 : gggaattcatgttttgctagagcag25 ( 2 ) information for seq id no : 8 :( i ) sequence characteristics :( a ) length : 26 base pairs ( b ) type : nucleic acid ( c ) strandedness : single ( d ) topology : linear ( ii ) molecule type : dna ( genomic )( xi ) sequence description : seq id no : 8 : gggaattcgtgattttcatacatacc26 ( 2 ) information for seq id no : 9 :( i ) sequence characteristics :( a ) length : 33 base pairs ( b ) type : nucleic acid ( c ) strandedness : single ( d ) topology : linear ( ii ) molecule type : dna ( genomic )( xi ) sequence description : seq id no : 9 : catcacggatccaaaaaagagcaacaaaatggg33 ( 2 ) information for seq id no : 10 :( i ) sequence characteristics :( a ) length : 33 base pairs ( b ) type : nucleic acid ( c ) strandedness : single ( d ) topology : linear ( ii ) molecule type : dna ( genomic )( xi ) sequence description : seq id no : 10 : ctctagagtcgacttaaagaacaattaattctc33 ( 2 ) information for seq id no : 11 :( i ) sequence characteristics :( a ) length : 28 base pairs ( b ) type : nucleic acid ( c ) strandedness : single ( d ) topology : linear ( ii ) molecule type : dna ( genomic )( xi ) sequence description : seq id no : 11 : catcacggatccgataagtgtgaaactg28 ( 2 ) information for seq id no : 12 :( i ) sequence characteristics :( a ) length : 6 amino acids ( b ) type : amino acid ( c ) strandedness : single ( d ) topology : linear ( ii ) molecule type : peptide ( xi ) sequence description : seq id no : 12 : xaalysxaagluthrxaa15 ( 2 ) information for seq id no : 13 :( i ) sequence characteristics :( a ) length : 20 amino acids ( b ) type : amino acid ( c ) strandedness : single ( d ) topology : linear ( ii ) molecule type : peptide ( xi ) sequence description : seq id no : 13 : pheserlysleutyrprogluserasnserleuthrglyleuiletyr151015alahisthrala20 ( 2 ) information for seq id no : 14 :( i ) sequence characteristics :( a ) length : 14 amino acids ( b ) type : amino acid ( c ) strandedness : single ( d ) topology : linear ( ii ) molecule type : peptide ( xi ) sequence description : seq id no : 14 : xaametleutyrasnxaaproasnasnserasnleupheasp1510 ( 2 ) information for seq id no : 15 :( i ) sequence characteristics :( a ) length : 5 amino acids ( b ) type : amino acid ( c ) strandedness : single ( d ) topology : linear ( ii ) molecule type : peptide ( xi ) sequence description : seq id no : 15 : lysleutyrproglu15 ( 2 ) information for seq id no : 16 :( i ) sequence characteristics :( a ) length : 5 amino acids ( b ) type : amino acid ( c ) strandedness : single ( d ) topology : linear ( ii ) molecule type : peptide ( xi ) sequence description : seq id no : 16 : tyralahisthrala15 ( 2 ) information for seq id no : 17 :( i ) sequence characteristics :( a ) length : 8 amino acids ( b ) type : amino acid ( c ) strandedness : single ( d ) topology : linear ( ii ) molecule type : peptide ( xi ) sequence description : seq id no : 17 : serasnserleuthrglyleuile15 ( 2 ) information for seq id no : 18 :( i ) sequence characteristics :( a ) length : 6 amino acids ( b ) type : amino acid ( c ) strandedness : single ( d ) topology : linear ( ii ) molecule type : peptide ( xi ) sequence description : seq id no : 18 : asplyscysgluthrglu15 ( 2 ) information for seq id no : 19 :( i ) sequence characteristics :( a ) length : 1519 base pairs ( b ) type : nucleic acid ( c ) strandedness : double ( d ) topology : linear ( ii ) molecule type : dna ( genomic )( ix ) feature :( a ) name / key : cds ( b ) location : 61 .. 1254 ( xi ) sequence description : seq id no : 19 : tttgtttttatttttaatataacatcatacagttaaaaaaaaaaaaaaaagagcaacaaa60atgggtttaaaattttatgtattagtttttcttattttatgtttgaag108metglyleulysphetyrvalleuvalpheleuileleucysleulys151015aatgttgtaaaaggggataagtgtgaaactgaattttcaaaattatat156asnvalvallysglyasplyscysgluthrglupheserlysleutyr202530ccggaatcaaattctttgactggtttaatttatgcacacactgcacat204progluserasnserleuthrglyleuiletyralahisthralahis354045gttcataaattatctatgtgggtttattttatttataatcactttagt252valhislysleusermettrpvaltyrpheiletyrasnhispheser505560agtgcagatgaattaataaaatatttagaaaaaaccaacataaatact300seralaaspgluleuilelystyrleuglulysthrasnileasnthr65707580ttagaaaatagtgatcatacatgttttgctagagcagttactttatat348leugluasnserasphisthrcysphealaargalavalthrleutyr859095ttgttttattactatcttaaggatattaagtctatgttaagtacagat396leuphetyrtyrtyrleulysaspilelyssermetleuserthrasp100105110gattatcaatcattttttaagaataaattcaaagatattaatccattg444asptyrglnserphephelysasnlysphelysaspileasnproleu115120125tttattaatgattttattttaattcttaatgataagaaatttatggaa492pheileasnasppheileleuileleuasnasplyslysphemetglu130135140aatctggatttatatataatgaaagaatctgagagagaacatttggtt540asnleuaspleutyrilemetlysglusergluarggluhisleuval145150155160ataaagaagaatccatttttacgtgtattgaataaagcatcaactact588ilelyslysasnpropheleuargvalleuasnlysalaserthrthr165170175acacatgcaacatataagtataatcgatactttatagtaggatcaaga636thrhisalathrtyrlystyrasnargtyrpheilevalglyserarg180185190gttcatacaccttataaagattactttggagattttaataaatatact684valhisthrprotyrlysasptyrpheglyasppheasnlystyrthr195200205gagataagtgtacttaattatgttcgtgattacaattttttaatttat732gluileservalleuasntyrvalargasptyrasnpheleuiletyr210215220gctggttcaagggaaaattactacaattcagatatagctggaccagca780alaglyserarggluasntyrtyrasnseraspilealaglyproala225230235240agaagtgttaataatgtaattagtaagaataaaacattaggattgaga828argservalasnasnvalileserlysasnlysthrleuglyleuarg245250255aaacgtagtagttctctcgctttagtaggaacaaataacaatgaccct876lysargserserserleualaleuvalglythrasnasnasnasppro260265270atatttgcttattgtgaaaaagataataaatcagaatattacggtaca924ilephealatyrcysglulysaspasnlysserglutyrtyrglythr275280285ccagatgatttaattacatctttcttttcaattataaaaactaaaatg972proaspaspleuilethrserphepheserileilelysthrlysmet290295300ttaaattctcataaaacgtttttaagacaatttgattatgctttattt1020leuasnserhislysthrpheleuargglnpheasptyralaleuphe305310315320cacaaaacatattcaatacctaacttaaaaggtttcagatttttgaaa1068hislysthrtyrserileproasnleulysglypheargpheleulys325330335caccttttccaaaaaaagaatttagtgaattttgtaggtatgtatgaa1116hisleupheglnlyslysasnleuvalasnphevalglymettyrglu340345350aatcacgtatcaacagaaataaatttcttagctgaagatttcgttgaa1164asnhisvalserthrgluileasnpheleualagluaspphevalglu355360365ttatttgatgtaactatggattgttattctcgccaatattcaaaccgt1212leupheaspvalthrmetaspcystyrserargglntyrserasnarg370375380gctgcagaaaacttcaaagctattagagaattaaatgttctt1254alaalagluasnphelysalailearggluleuasnvalleu385390395taaaataaaatacatttataaataaacatataactattacaaaatacacatttttatatt1314taaaggtttctcataaatatgtttttgtttgcttttgttttattaatattattattactt1374ttttgttattttattttattttaatttttttttttttttgttttaaatatttctttaagt1434tgacatttaaatattatattacaaggaaaaggtcttaaatatatatatatatatatgtat1494atattttcttttaatgggtaaaaag1519 ( 2 ) information for seq id no : 20 :( i ) sequence characteristics :( a ) length : 27 base pairs ( b ) type : nucleic acid ( c ) strandedness : double ( d ) topology : linear ( ii ) molecule type : dna ( genomic )( ix ) feature :( a ) name / key : cds ( b ) location : 1 .. 27 ( xi ) sequence description : seq id no : 20 : gcacacactgcamatgttcataaatta27 ( 2 ) information for seq id no : 21 :( i ) sequence characteristics :( a ) length : 9 amino acids ( b ) type : amino acid ( c ) strandedness : single ( d ) topology : linear ( ii ) molecule type : peptide ( xi ) sequence description : seq id no : 21 : alahisthralaxaavalhislysleu15 ( 2 ) information for seq id no : 22 :( i ) sequence characteristics :( a ) length : 67 base pairs ( b ) type : nucleic acid ( c ) strandedness : double ( d ) topology : linear ( ii ) molecule type : dna ( genomic )( ix ) feature :( a ) name / key : cds ( b ) location : 2 .. 67 ( xi ) sequence description : seq id no : 22 : ttataagtmtaatccatactttatagtaggatcaagagttcatacaccttataaagatta60cytwgga67 ( 2 ) information for seq id no : 23 :( i ) sequence characteristics :( a ) length : 22 amino acids ( b ) type : amino acid ( c ) strandedness : single ( d ) topology : linear ( ii ) molecule type : peptide ( xi ) sequence description : seq id no : 23 : tyrlysxaaasnargtyrpheilevalglyserargvalhisthrpro151015tyrlysasptyrxaagly20__________________________________________________________________________