Patent Abstract:
catalase enzymes derived from bacteria from the genera alcaligenes and microscilla are disclosed . the enzymes are produced from native or recombinant host cells and can be utilized to destroy or detect hydrogen peroxide , e . g ., in production of glyoxylic acid and in glucose sensors , and in processes where hydrogen peroxide is used as a bleaching or antibacterial agent , e . g . in contact lens cleaning , in bleaching steps in pulp and paper preparation and in the pasteurization of dairy products .

Detailed Description:
in order to facilitate understanding of the following description and examples which follow certain frequently occurring methods and / or terms will be described . the term &# 34 ; isolated &# 34 ; means altered &# 34 ; by the hand of man &# 34 ; from its natural state ; i . e ., if it occurs in nature , it has been changed or removed from its original environment , or both . for example , a naturally occurring polynucleotide or a polypeptide naturally present in a living animal in its natural state is not &# 34 ; isolated &# 34 ;, but the same polynucleotide or polypeptide separated from the coexisting materials of its natural state is &# 34 ; isolated &# 34 ;, as the term is employed herein . for example , with respect to polynucleotides , the term isolated means that it is separated from the nucleic acid and cell in which it naturally occurs . as part of or following isolation , such polynucleotides can be joined to other polynucleotides , such as dnas , for mutagenesis , to form fusion proteins , and for propagation or expression in a host , for instance . the isolated polynucleotides , alone or joined to other polynucleotides such as vectors , can be introduced into host cells , in culture or in whole organisms . introduced into host cells in culture or in whole organisms , such polynucleotides still would be isolated , as the term is used herein , because they would not be in their naturally occurring form or environment . similarly , the polynucleotides and polypeptides may occur in a composition , such as a media formulation ( solutions for introduction of polynucleotides or polypeptides , for example , into cells or compositions or solutions for chemical or enzymatic reactions which are not naturally occurring compositions ) and , therein remain isolated polynucleotides or polypeptides within the meaning of that term as it is employed herein . the term &# 34 ; ligation &# 34 ; refers to the process of forming phosphodiester bonds between two or more polynucleotides , which most often are double stranded dnas . techniques for ligation are well known to the art and protocols for ligation are described in standard laboratory manuals and references , such as , for instance , sambrook et al ., molecular cloning , a laboratory manual , 2nd ed . ; cold spring harbor laboratory press , cold spring harbor , n . y . ( 1989 ). the term &# 34 ; gene &# 34 ; means the segment of dna involved in 4producing a polypeptide chain ; it includes regions preceding and following the coding region ( leader and trailer ) as well as intervening sequences ( introns ) between individual coding segments ( exons ). a coding sequence is &# 34 ; operably linked to &# 34 ; another coding sequence when rna polymerase will transcribe the two coding sequences into a single mrna , which is then translated into a single polypeptide having amino acids derived from both coding sequences . the coding sequences need not be contiguous to one another so long as the expressed sequences ultimately process to produce the desired protein . &# 34 ; recombinant &# 34 ; enzymes refer to enzymes produced by recombinant dna techniques ; i . e ., produced from cells transformed by an exogenous dna construct encoding the desired enzyme . &# 34 ; synthetic &# 34 ; enzymes are those prepared by chemical synthesis . a dna &# 34 ; coding sequence of &# 34 ; or a &# 34 ; nucleotide sequence encoding &# 34 ; a particular enzyme , is a dna sequence which is transcribed and translated into an enzyme when placed under the control of appropriate regulatory sequences . &# 34 ; plasmids &# 34 ; are designated by a lower case &# 34 ; p &# 34 ; preceded and / or followed by capital letters and / or numbers . the starting plasmids herein are either commercially available , publicly available on an unrestricted basis , or can be constructed from available plasmids in accord with published procedures . in addition , equivalent plasmids to those described are known in the art and will be apparent to the ordinarily skilled artisan . &# 34 ; digestion &# 34 ; of dna refers to catalytic cleavage of the dna with a restriction enzyme that acts only at certain sequences in the dna . the various restriction enzymes used herein are commercially available and their reaction conditions , cofactors and other requirements were used as would be known to the ordinarily skilled artisan . for analytical purposes , typically 1 μg of plasmid or dna fragment is used with about 2 units of enzyme in about 20 μl of buffer solution . for the purpose of isolating dna fragments for plasmid construction , typically 5 to 50 μg of dna are digested with 20 to 250 units of enzyme in a larger volume . appropriate buffers and substrate amounts for particular restriction enzymes are specified by the manufacturer . incubation times of about 1 hour at 37 ° c . are ordinarily used , but may vary in accordance with the supplier &# 39 ; s instructions . after digestion the reaction is electrophoresed directly on a polyacrylamide gel to isolate the desired fragment . size separation of the cleaved fragments is performed using 8 percent polyacrylamide gel described by goeddel et al ., nucleic acids res ., 8 : 4057 ( 1980 ). &# 34 ; oligonucleotides &# 34 ; refers to either a single stranded polydeoxynucleotide or two complementary polydeoxynucleotide strands which may be chemically synthesized . such synthetic oligonucleotides have no 5 &# 39 ; phosphate and thus will not ligate to another oligonucleotide without adding a phosphate with an atp in the presence of a kinase . a synthetic oligonucleotide will ligate to a fragment that has not been dephosphorylated . &# 34 ; ligation &# 34 ; refers to the process of forming phosphodiester bonds between two double stranded nucleic acid fragments ( maniatis , t ., et al ., id ., p . 146 ). unless otherwise provided , ligation may be accomplished using known buffers and conditions with 10 units of t4 dna ligase (&# 34 ; ligase &# 34 ;) per 0 . 5 μg of approximately equimolar amounts of the dna fragments to be ligated . unless otherwise stated , transformation was performed as described in sambrook and maniatis , molecular cloning : a laboratory manual , cold spring harbor laboratory , 1989 . in accordance with an aspect of the present invention , there are provided isolated nucleic acids ( polynucleotides ) which encode for the mature enzyme having the deduced amino acid sequence of fig1 ( seq id no : 6 ). in accordance with another aspect of the present invention , there are provided isolated nucleic acids ( polynucleotides ) which encode for the mature enzyme having the deduced amino acid sequence of fig2 ( seq id no : 8 ). the polynucleotides of this invention were originally recovered from a genomic gene library derived from two sources . the first , alcaligenes ( delaya ) aquamarinus , is a β - proteobacteria . it is a gram - negative rod that grows optimally at 26 ° c . and ph 7 . 2 . the second , microscilla furvescens , is a cytophagales ( bacteria ) isolated from samoa . it is a gram - negative rod with gliding motility that grows optimally at 30 ° c . and ph 7 . 0 . with respect to alcaligenes ( delaya ) aquamarinus , the protein with the closest amino acid sequence identity of which the inventors are currently aware is the microscilla furvescens catalase ( 59 . 5 % protein identity ; 60 % dna identity ). the next closest is a mycobacterium tuberculosis catalase ( katg ), with a 54 % protein identity . with respect to microscilla furvescens , the protein with the closest amino acid sequence identity of which the inventors are currently aware is catalase i of bacillus stearothermophilus , which has a 69 % amino acid identity . accordingly , the polynucleotides and enzymes encoded thereby are identified by the organism from which they were isolated . such are sometimes referred to below as &# 34 ; 64ca2 &# 34 ; ( fig1 and seq id nos : 5 and 6 ) and &# 34 ; 53ca1 &# 34 ; ( fig2 and seq id nos : 7 and 8 ). one means for isolating the nucleic acid molecules encoding the enzymes of the present invention is to probe a gene library with a natural or artificially designed probe using art recognized procedures ( see , for example : current protocols in molecular biology , ausubel f . m . et al . ( eds .) green publishing company assoc . and john wiley interscience , new york , 1989 , 1992 ). it is appreciated by one skilled in the art that the polynucleotides of seq id nos : 5 and 7 , or fragments thereof ( comprising at least 12 contiguous nucleotides ), are particularly useful probes . other particularly useful probes for this purpose are hybridizable fragments of the sequences of seq id nos : 5 and 7 ( i . e ., comprising at least 12 contiguous nucleotides ). with respect to nucleic acid sequences which hybridize to specific nucleic acid sequences disclosed herein , hybridization may be carried out under conditions of reduced stringency , medium stringency or even stringent conditions . as an example of oligonucleotide hybridization , a polymer membrane containing immobilized denatured nucleic acids is first prehybridized for 30 minutes at 45 ° c . in a solution consisting of 0 . 9 m nacl , 50 mm nah 2 po 4 , ph 7 . 0 , 5 . 0 mm na 2 edta , 0 . 5 % sds , 10 × denhardt &# 39 ; s , and 0 . 5 mg / ml polyriboadenylic acid . approximately 2 × 10 7 cpm ( specific activity 4 - 9 × 10 8 cpm / ug ) of 32 p end - labeled oligonucleotide probe are then added to the solution . after 12 - 16 hours of incubation , the membrane is washed for 30 minutes at room temperature in 1 × set ( 150 mm nacl , 20 mm tris hydrochloride , ph 7 . 8 , 1 mm na 2 edta ) containing 0 . 5 % sds , followed by a 30 minute wash in fresh 1 × set at ( tm less 10 ° c .) for the oligonucleotide probe . the membrane is then exposed to auto - radiographic film for detection of hybridization signals . stringent conditions means hybridization will occur only if there is at least 90 % identity , preferably at least 95 % identity and most preferably at least 97 % identity between the sequences . further , it is understood that a section of a 100 bps sequence that is 95 bps in length has 95 % identity with the 1090 bps sequence from which it is obtained . see j . sambrook et al ., molecular cloning , a laboratory manual , 2d ed ., cold spring harbor laboratory ( 1989 ) which is hereby incorporated by reference in its entirety . also , it is understood that a fragment of a 100 bps sequence that is 95 bps in length has 95 % identity with the 100 bps sequence from which it is obtained . as used herein , a first dna ( rna ) sequence is at least 70 % and preferably at least 80 % identical to another dna ( rna ) sequence if there is at least 70 % and preferably at least a 80 % or 90 % identity , respectively , between the bases of the first sequence and the bases of the another sequence , when properly aligned with each other , for example when aligned by blastn . the present invention relates to polynucleotides which differ from the reference polynucleotide such that the differences are silent , for example , the amino acid sequence encoded by the polynucleotides is the same . the present invention also relates to nucleotide changes which result in amino acid substitutions , additions , deletions , fusions and truncations in the polypeptide encoded by the reference polynucleotide . in a preferred aspect of the invention these polypeptides retain the same biological action as the polypeptide encoded by the reference polynucleotide . the polynucleotides of this invention were recovered from genomic gene libraries from the organisms identified above . gene libraries were generated from a lambda zap ii cloning vector ( stratagene cloning systems ). mass excisions were performed on these libraries to generate libraries in the pbluescript phagemid . libraries were generated and excisions were performed according to the protocols / methods hereinafter described . the polynucleotides of the present invention may be in the form of rna or dna , which dna includes cdna , genomic dna , and synthetic dna . the dna may be double - stranded or single - stranded , and if single stranded may be coding strand or non - coding ( anti - sense ) strand . the coding sequences which encodes the mature enzymes may be identical to the coding sequences shown in fig1 - 2 ( seq id nos : 5 & amp ; 7 ) or may be a different coding sequence which coding sequence , as a result of the redundancy or degeneracy of the genetic code , encodes the same mature enzymes as the dna of fig1 - 2 ( seq id nos : 6 & amp ; 8 ). the polynucleotide which encodes for the mature enzyme of fig1 - 2 ( seq id nos : 6 & amp ; 8 ) may include , but is not limited to : only the coding sequence for the mature enzyme ; the coding sequence for the mature enzyme and additional coding sequence such as a leader sequence or a proprotein sequence ; the coding sequence for the mature enzyme ( and optionally additional coding sequence ) and non - coding sequence , such as introns or non - coding sequence 5 &# 39 ; and / or 3 &# 39 ; of the coding sequence for the mature enzyme . thus , the term &# 34 ; polynucleotide encoding an enzyme ( protein )&# 34 ; encompasses a polynucleotide which includes only coding sequence for the enzyme as well as a polynucleotide which includes additional coding and / or non - coding sequence . the present invention further relates to variants of the hereinabove described polynucleotides which encode for fragments , analogs and derivatives of the enzymes having the deduced amino acid sequences of fig1 - 2 ( seq id nos : 6 & amp ; 8 ). the variant of the polynucleotide may be a naturally occurring allelic variant of the polynucleotide or a non - naturally occurring variant of the polynucleotide . thus , the present invention includes polynucleotides encoding the same mature enzymes as shown in fig1 - 2 ( seq id nos : 6 & amp ; 8 ) as well as variants of such polynucleotides which variants encode for a fragment , derivative or analog of the enzymes of fig1 - 2 ( seq id nos : 6 & amp ; 8 ). such nucleotide variants include deletion variants , substitution variants and addition or insertion variants . as hereinabove indicated , the polynucleotides may have a coding sequence which is a naturally occurring allelic variant of the coding sequence shown in fig1 - 2 ( seq id nos : 5 & amp ; 7 ). as known in the art , an allelic variant is an alternate form of a polynucleotide sequence which may have a substitution , deletion or addition of one or more nucleotides , which does not substantially alter the function of the encoded enzyme . also , using directed and other evolution strategies , one may make very minor changes in dna sequence which can result in major changes in function . fragments of the full length gene of the present invention may be used as hybridization probes for a cdna or a genomic library to isolate the full length dna and to isolate other dnas which have a high sequence similarity to the gene or similar biological activity . probes of this type preferably have at least 10 , preferably at least 15 , and even more preferably at least 30 bases and may contain , for example , at least 50 or more bases . in fact , probes of this type having at least up to 150 bases or greater may be preferably utilized . the probe may also be used to identify a dna clone corresponding to a full length transcript and a genomic clone or clones that contain the complete gene including regulatory and promotor regions , exons and introns . an example of a screen comprises isolating the coding region of the gene by using the known dna sequence to synthesize an oligonucleotide probe . labeled oligonucleotides having a sequence complementary or identical to that of the gene or portion of the gene sequences of the present invention are used to screen a library of genomic dna to determine which members of the library the probe hybridizes to . it is also appreciated that such probes can be and are preferably labeled with an analytically detectable reagent to facilitate identification of the probe . useful reagents include but are not limited to radioactivity , fluorescent dyes or enzymes capable of catalyzing the formation of a detectable product . the probes are thus useful to isolate complementary copies of dna from other sources or to screen such sources for related sequences . the present invention further relates to polynucleotides which hybridize to the hereinabove - described sequences if there is at least 70 %, preferably at least 90 %, and more preferably at least 95 % identity between the sequences . ( as indicated above , 70 % identity would include within such definition a 70 bps fragment taken from a 100 bp polynucleotide , for example .) the present invention particularly relates to polynucleotides which hybridize under stringent conditions to the hereinabove - described polynucleotides . as herein used , the term &# 34 ; stringent conditions &# 34 ; means hybridization will occur only if there is at least 95 % and preferably at least 97 % identity between the sequences . the polynucleotides which hybridize to the hereinabove described polynucleotides in a preferred embodiment encode enzymes which either retain substantially the same biological function or activity as the mature enzyme encoded by the dna of fig1 - 2 ( seq id nos : 5 & amp ; 7 ). in referring to identity in the case of hybridization , as known in the art , such identity refers to the complementarity of two polynucleotide segments . alternatively , the polynucleotide may have at least 15 bases , preferably at least 30 bases , and more preferably at least 50 bases which hybridize to any part of a polynucleotide of the present invention and which has an identity thereto , as hereinabove described , and which may or may not retain activity . for example , such polynucleotides may be employed as probes for the polynucleotides of seq id nos : 5 & amp ; 7 , for example , for recovery of the polynucleotide or as a diagnostic probe or as a pcr primer . thus , the present invention is directed to polynucleotides having at least a 70 % identity , preferably at least 90 % identity and more preferably at least a 95 % identity to a polynucleotide which encodes the enzymes of seq id nos : 6 & amp ; 8 as well as fragments thereof , which fragments have at least 15 bases , preferably at least 30 bases , more preferably at least 50 bases and most preferably fragments having up to at least 150 bases or greater , which fragments are at least 90 % identical , preferably at least 95 % identical and most preferably at least 97 % identical to any portion of a polynucleotide of the present invention . the terms &# 34 ; fragment ,&# 34 ; &# 34 ; derivative &# 34 ; and &# 34 ; analog &# 34 ; when referring to the enzymes of fig1 - 2 ( seq nos . 6 & amp ; 8 ) means enzymes which retain essentially the same biological function or activity as such enzymes . thus , an analog includes a proprotein which can be activated by cleavage of the proprotein portion to produce an active mature enzyme . the enzymes of the present invention may be a recombinant enzyme , a natural enzyme or a synthetic enzyme , preferably a recombinant enzyme . the fragment , derivative or analog of the enzymes of fig1 - 2 ( seq id nos : 6 & amp ; 8 ) may be ( i ) one in which one or more of the amino acid residues are substituted with a conserved or non - conserved amino acid residue ( preferably a conserved amino acid residue ) and such substituted amino acid residue may or may not be one encoded by the genetic code , or ( ii ) one in which one or more of the amino acid residues includes a substituent group , or ( iii ) one in which the mature enzyme is fused with another compound , such as a compound to increase the half - life of the enzyme ( for example , polyethylene glycol ), or ( iv ) one in which the additional amino acids are fused to the mature enzyme , such as a leader or secretory sequence or a sequence which is employed for purification of the mature enzyme or a proprotein sequence . such fragments , derivatives and analogs are deemed to be within the scope of those skilled in the art from the teachings herein . the enzymes and polynucleotides of the present invention are preferably provided in an isolated form , and preferably are purified to homogeneity . the present invention also relates to vectors which include polynucleotides of the present invention , host cells which are genetically engineered with vectors of the invention and the production of enzymes of the invention by recombinant techniques . host cells are genetically engineered ( transduced or transformed or transfected ) with the vectors of this invention which may be , for example , a cloning vector such as an expression vector . the vector may be , for example , in the form of a plasmid , a phage , etc . the engineered host cells can be cultured in conventional nutrient media modified as appropriate for activating promoters , selecting transformants or amplifying the genes of the present invention . the culture conditions , such as temperature , ph and the like , are those previously used with the host cell selected for expression , and will be apparent to the ordinarily skilled artisan . the polynucleotides of the present invention may be employed for producing enzymes by recombinant techniques . thus , for example , the polynucleotide may be included in any one of a variety of expression vectors for expressing an enzyme . such vectors include chromosomal , nonchromosomal and synthetic dna sequences , e . g ., derivatives of sv40 ; bacterial plasmids ; phage dna ; baculovirus ; yeast plasmids ; vectors derived from combinations of plasmids and phage dna , viral dna such as vaccinia , adenovirus , fowl pox virus , and pseudorabies . however , any other vector may be used as long as it is replicable and viable in the host . the appropriate dna sequence may be inserted into the vector by a variety of procedures . in general , the dna sequence is inserted into an appropriate restriction endonuclease site ( s ) by procedures known in the art . such procedures and others are deemed to be within the scope of those skilled in the art . the dna sequence in the expression vector is operatively linked to an appropriate expression control sequence ( s ) ( promoter ) to direct mrna synthesis . as representative examples of such promoters , there may be mentioned : ltr or sv40 promoter , the e . coli . lac or trp , the phage lambda p l promoter and other promoters known to control expression of genes in prokaryotic or eukaryotic cells or their viruses . the expression vector also contains a ribosome binding site for translation initiation and a transcription terminator . the vector may also include appropriate sequences for amplifying expression . in addition , the expression vectors preferably contain one or more selectable marker genes to provide a phenotypic trait for selection of transformed host cells such as dihydrofolate reductase or neomycin resistance for eukaryotic cell culture , or such as tetracycline or ampicillin resistance in e . coli . the vector containing the appropriate dna sequence as hereinabove described , as well as an appropriate promoter or control sequence , may be employed to transform an appropriate host to permit the host to express the protein . as representative examples of appropriate hosts , there may be mentioned : bacterial cells , such as e . coli , streptomyces , bacillus subtilis ; fungal cells , such as yeast ; insect cells such as drosophila s2 and spodoptera sf9 ; animal cells such as cho , cos or bowes melanoma ; adenoviruses ; plant cells , etc . the selection of an appropriate host is deemed to be within the scope of those skilled in the art from the teachings herein . more particularly , the present invention also includes recombinant constructs comprising one or more of the sequences as broadly described above . the constructs comprise a vector , such as a plasmid or viral vector , into which a sequence of the invention has been inserted , in a forward or reverse orientation . in a preferred aspect of this embodiment , the construct further comprises regulatory sequences , including , for example , a promoter , operably linked to the sequence . large numbers of suitable vectors and promoters are known to those of skill in the art , and are commercially available . the following vectors are provided by way of example ; bacterial : pqe70 , pqe60 , pqe - 9 ( qiagen ), pbluescript ii ks ( stratagene ), ptrc99a , pkk223 - 3 , pdr540 , prit2t ( pharmacia ); eukaryotic : pxt1 , psg5 ( stratagene ) psvk3 , pbpv , pmsg , psvl sv40 ( pharmacia ). however , any other plasmid or vector may be used as long as they are replicable and viable in the host . promoter regions can be selected from any desired gene using cat ( chloramphenicol transferase ) vectors or other vectors with selectable markers . two appropriate vectors are pkk232 - 8 and pcm7 . particular named bacterial promoters include laci , lacz , t3 , t7 , gpt , lambda p r , p l and trp . eukaryotic promoters include cmv immediate early , hsv thymidine kinase , early and late sv40 , ltrs from retrovirus , and mouse metallothionein - i . selection of the appropriate vector and promoter is well within the level of ordinary skill in the art . in a further embodiment , the present invention relates to host cells containing the above - described constructs . the host cell can be a higher eukaryotic cell , such as a mammalian cell , or a lower eukaryotic cell , such as a yeast cell , or the host cell can be a prokaryotic cell , such as a bacterial cell . introduction of the construct into the host cell can be effected by calcium phosphate transfection , deae - dextran mediated transfection , or electroporation ( davis , l ., dibner , m ., battey , i ., basic methods in molecular biology , ( 1986 )). the constructs in host cells can be used in a conventional manner to produce the gene product encoded by the recombinant sequence . alternatively , the enzymes of the invention can be synthetically produced by conventional peptide synthesizers . mature proteins can be expressed in mammalian cells , yeast , bacteria , or other cells under the control of appropriate promoters . cell - free translation systems can also be employed to produce such proteins using rnas derived from the dna constructs of the present invention . appropriate cloning and expression vectors for use with prokaryotic and eukaryotic hosts are described by sambrook et al ., molecular cloning : a laboratory manual , second edition , cold spring harbor , n . y ., ( 1989 ), the disclosure of which is hereby incorporated by reference . transcription of the dna encoding the enzymes of the present invention by higher eukaryotes is increased by inserting an enhancer sequence into the vector . enhancers are cis - acting elements of dna , usually about from 10 to 300 bp that act on a promoter to increase its transcription . examples include the sv40 enhancer on the late side of the replication origin bp 100 to 270 , a cytomegalovirus early promoter enhancer , the polyoma enhancer on the late side of the replication origin , and adenovirus enhancers . generally , recombinant expression vectors will include origins of replication and selectable markers permitting transformation of the host cell , e . g ., the ampicillin resistance gene of e . coli and s . cerevisiae trp1 gene , and a promoter derived from a highly - expressed gene to direct transcription of a downstream structural sequence . such promoters can be derived from operons encoding glycolytic enzymes such as 3 - phosphoglycerate kinase ( pgk ), α - factor , acid phosphatase , or heat shock proteins , among others . the heterologous structural sequence is assembled in appropriate phase with translation initiation and termination sequences , and preferably , a leader sequence capable of directing secretion of translated enzyme . optionally , the heterologous sequence can encode a fusion enzyme including an n - terminal identification peptide imparting desired characteristics , e . g ., stabilization or simplified purification of expressed recombinant product . useful expression vectors for bacterial use are constructed by inserting a structural dna sequence encoding a desired protein together with suitable translation initiation and termination signals in operable reading phase with a functional promoter . the vector will comprise one or more phenotypic selectable markers and an origin of replication to ensure maintenance of the vector and to , if desirable , provide amplification within the host . suitable prokaryotic hosts for transformation include e . coli , bacillus subtilis , salmonella typhimurium and various species within the genera pseudomonas , streptomyces , and staphylococcus , although others may also be employed as a matter of choice . as a representative but nonlimiting example , useful expression vectors for bacterial use can comprise a selectable marker and bacterial origin of replication derived from commercially available plasmids comprising genetic elements of the well known cloning vector pbr322 ( atcc 37017 ). such commercial vectors include , for example , pkk223 - 3 ( pharmacia fine chemicals , uppsala , sweden ) and pgem1 ( promega biotec , madison , wis ., usa ). these pbr322 &# 34 ; backbone &# 34 ; sections are combined with an appropriate promoter and the structural sequence to be expressed . following transformation of a suitable host strain and growth of the host strain to an appropriate cell density , the selected promoter is induced by appropriate means ( e . g ., temperature shift or chemical induction ) and cells are cultured for an additional period . cells are typically harvested by centrifugation , disrupted by physical or chemical means , and the resulting crude extract retained for further purification . microbial cells employed in expression of proteins can be disrupted by any convenient method , including freeze - thaw cycling , sonication , mechanical disruption , or use of cell lysing agents , such methods are well known to those skilled in the art . various mammalian cell culture systems can also be employed to express recombinant protein . examples of mammalian expression systems include the cos - 7 lines of monkey kidney fibroblasts , described by gluzman , cell , 23 : 175 ( 1981 ), and other cell lines capable of expressing a compatible vector , for example , the c127 , 3t3 , cho , hela and bhk cell lines . mammalian expression vectors will comprise an origin of replication , a suitable promoter and enhancer , and also any necessary ribosome binding sites , polyadenylation site , splice donor and acceptor sites , transcriptional termination sequences , and 5 &# 39 ; flanking nontranscribed sequences . dna sequences derived from the sv40 splice , and polyadenylation sites may be used to provide the required nontranscribed genetic elements . the enzyme can be recovered and purified from recombinant cell cultures by methods including ammonium sulfate or ethanol precipitation , acid extraction , anion or cation exchange chromatography , phosphocellulose chromatography , hydrophobic interaction chromatography , affinity chromatography , hydroxylapatite chromatography and lectin chromatography . protein refolding steps can be used , as necessary , in completing configuration of the mature protein . finally , high performance liquid chromatography ( hplc ) can be employed for final purification steps . the enzymes of the present invention may be a naturally purified product , or a product of chemical synthetic procedures , or produced by recombinant techniques from a prokaryotic or eukaryotic host ( for example , by bacterial , yeast , higher plant , insect and mammalian cells in culture ). depending upon the host employed in a recombinant production procedure , the enzymes of the present invention may be glycosylated or may be non - glycosylated . enzymes of the invention may or may not also include an initial methionine amino acid residue . antibodies generated against the enzymes corresponding to a sequence of the present invention can be obtained by direct injection of the enzymes into an animal or by administering the enzymes to an animal , preferably a nonhuman . the antibody so obtained will then bind the enzymes itself . in this manner , even a sequence encoding only a fragment of the enzymes can be used to generate antibodies binding the whole native enzymes . such antibodies can then be used to isolate the enzyme from cells expressing that enzyme . for preparation of monoclonal antibodies , any technique which provides antibodies produced by continuous cell line cultures can be used . examples include the hybridoma technique ( kohler and milstein , nature , 256 : 495 - 497 , 1975 ), the trioma technique , the human b - cell hybridoma technique ( kozbor et al ., immunology today 4 : 72 , 1983 ), and the ebv - hybridoma technique to produce human monoclonal antibodies ( cole et al ., in monoclonal antibodies and cancer therapy , alan r . liss , inc ., pp . 77 - 96 , 1985 ). techniques described for the production of single chain antibodies ( u . s . pat . no . 4 , 946 , 778 ) can be adapted to produce single chain antibodies to immunogenic enzyme products of this invention . also , transgenic mice may be used to express humanized antibodies to immunogenic enzyme products of this invention . antibodies generated against an enzyme of the present invention may be used in screening for similar enzymes from other organisms and samples . such screening techniques are known in the art , for example , one such screening assay is described in sambrook and maniatis , molecular cloning : a laboratory manual ( 2d ed . ), vol . 2 : section 8 . 49 , cold spring harbor laboratory , 1989 , which is hereby incorporated by reference in its entirety . the present invention will be further described with reference to the following examples ; however , it is to be understood that the present invention is not limited to such examples . all parts or amounts , unless otherwise specified , are by weight . an e . coli catalase negative host strain cat500 was infected with a phage solution containing sheared pieces of dna from alcaligenes ( deleya ) aquamarinus in pbluescript plasmid and plated on agar containing lb with ampicillin ( 100 μg / ml ), methicillin ( 80 μg / ml ) and kanamycin ( 100 μg / ml ) according to the method of hay and short ( hay , b . and short , j ., j . strategies , 5 : 16 , 1992 ). the resulting colonies were picked with sterile toothpicks and used to singly inoculate each of the wells of 96 - well microtiter plates . the wells contained 250 μl of sob media with 100 μg / ml ampicillin , 80 μg / ml methicillin , and ( sob amp / meth / kan ). the cells were grown overnight at 37 ° c . without shaking . this constituted generation of the &# 34 ; sourcegenebank &# 34 ;; each well of the source genebank thus contained a stock culture of e . coli cells , each of which contained a pbluescript plasmid with a unique dna insert . same protocol was adapted for screening catalase from microscilla furvescens . the plates of the source genebank were used to multiply inoculate a single plate ( the &# 34 ; condensed plate &# 34 ;) containing in each well 200 μl of sob amp / meth / kan . this step was performed using the high density replicating tool ( hdrt ) of the beckman biomek with a 1 % bleach , water , isopropanol , air - dry sterilization cycle in between each inoculation . each well of the condensed plate thus contained 4 different pbluescript clones from each of the source library plates . nine such condensed plates were prepared and grown for 16h at 37 ° c . one hundred ( 100 ) μl of the overnight culture was transferred to the white polyfiltronic assay plates containing 100 μl hepes / well . a 0 . 03 % solution of hydrogen peroxide was made in 5 % triton and 20 μl of this solution was added to each well . the plates were incubated at room temperature for one hour . after an hour , 50 μl of 120 mm 3 -( p - hydroxyphenyl )- propionic acid and 1 unit of horseradish peroxidase were added to each well and the plates were incubated at room temperature for 1 hour . to quench the reaction , 50 μl of 1 m tris - base was added to each well . the wells were excited on a fluorometer at 320 nm and read at 404 nm . a low value signified a positive catalase hit . in order to isolate the individual clone which carried the activity , the source genebank plates were thawed and the individual wells used to singly inoculate a new plate containing sob amp / meth / kan . as above the plate was incubated at 37 ° c . to grow the cells , and assayed for activity as described above . once the active well from the source plate was identified , the cells from the source plate were streaked on agar with lb / amp / meth / kan and grown overnight at 37 ° c . to obtain single colonies . eight single colonies were picked with a sterile toothpick and used to singly inoculate the wells of a 96 - well microtiter plate . the wells contained 250 μl of sob amp / meth / kan . the cells were grown overnight at 37 ° c . without shaking . a 100 μl aliquot was removed from each well and assayed as indicated above . the most active clone was identified and the remaining 150 μl of culture was used to streak an agar plate with lb / amp / meth / kan . eight single colonies were picked , grown and assayed as above . the most active clone was used to inoculate 3 ml cultures of lb / amp / meth / kan , which were grown overnight . the plasmid dna was isolated from the cultures and utilized for sequencing . dna encoding the enzymes of the present invention , seq id nos : 7 and 9 , were initially amplified from a pbluescript vector containing the dna by the pcr technique using the primers noted herein . the amplified sequences were then inserted into the respective pqe vector listed beneath the primer sequences , and the enzyme was expressed according to the protocols set forth herein . the 5 &# 39 ; and 3 &# 39 ; oligonucleotide primer sequences used for subcloning and vectors for the respective genes are as follows : __________________________________________________________________________5 &# 39 ; primer ccgagaattcattaaagaggagaaattaactatgaataacgcatccgctgac ecori ( seq id no : 1 ) - 3 &# 39 ; primer cggaaagcttttacgacgcgacgtcgaaacg hindiii ( seq id no : 2 ) __________________________________________________________________________ __________________________________________________________________________5 &# 39 ; primer ccgagaattcattaaagaggagaaattaactatggaaaatcacaaacactca ecori ( seq id no : 3 ) - 3 &# 39 ; primer cgaaggtaccttatttcagatcaaaccggtc kpni ( seq id no : 4 ) __________________________________________________________________________ the restriction enzyme sites indicated correspond to the restriction enzyme sites on the bacterial expression vector indicated for the respective gene ( qiagen , inc . chatsworth , calif .). the pqet vector encodes antibiotic resistance ( amp r ), a bacterial origin of replication ( ori ), an iptg - regulatable promoter operator ( p / o ), a ribosome binding site ( rbs ), a 6 - his tag and restriction enzyme sites . the pqet vector was digested with the restriction enzymes indicated . the amplified sequences were ligated into the respective pqet vector and inserted in frame with the sequence encoding for the rbs . the native stop codon was incorporated so the genes were not fused to the his tag of the vector . the ligation mixture was then used to transform the e . coli strain um255 / prep4 ( qiagen , inc .) by electroporation . um255 / prep4 contains multiple copies of the plasmid prep4 , which expresses the lad repressor and also confers kanamycin resistance ( kan r ). transformants were identified by their ability to grow on lb plates and ampicillin / kanamycin resistant colonies were selected . plasmid dna was isolated and confirmed by restriction analysis . clones containing the desired constructs were grown overnight ( o / n ) in liquid culture in lb media supplemented with both amp ( 100 ug / ml ) and kan ( 25 ug / ml ). the o / n culture was used to inoculate a large culture at a ratio of 1 : 100 to 1 : 250 . the cells were grown to an optical density 600 ( o . d . 600 ) of between 0 . 4 and 0 . 6 . iptg (&# 34 ; isopropyl - b - d - thiogalacto pyranoside &# 34 ;) was then added to a final concentration of 1 mm . iptg induces by inactivating the lad repressor , clearing the p / o leading to increased gene expression . cells were grown an extra 3 to 4 hours . cells were then harvested by centrifugation . the primer sequences set out above may also be employed to isolate the target gene from the deposited material by hybridization techniques described above . 1 ) u . s . pat . no . 5 , 439 , 813 , aug . 8 , 1995 , production of glyoxylic acid with glycolate oxidase and catalase immobilized on oxirane acrylic beads , anton , d . l ., wilmington , del ., dicosimo , r ., wilmington , del ., gavagan , j . e ., wilmington , del . 2 ) u . s . pat . no . 5 , 360 , 732 , nov . 1 , 1994 , production of aspergillus niger catalase - r , berka , r . m ., san mateo , calif ., fowler , t ., redwood city , calif ., rey , m . w ., san mateo , calif . 3 ) u . s . pat . no . 4 , 460 , 686 , jul . 17 , 1984 , glucose oxidation with immobilized glucose oxidase - catalase , hartmeier , w ., ingelheim am rhein , germany 4 ) u . s . pat . no . 5 , 447 , 650 , sep . 5 , 1995 , composition for preventing the accumulation of inorganic deposits on contact lenses , cafaro , d . p ., santa ana , calif . 5 ) u . s . pat . no . 5 , 362 , 647 , nov . 8 , 1994 , compositions and methods for destroying hydrogen peroxide , cook , j . n ., mission viejo , calif ., worsley , j . l ., irvine , calif . 6 ) u . s . pat . no . 5 , 266 , 338 , 1993 , cascione , a . s ., rapp , h . 7 ) patrick dhaese , &# 34 ; catalase : an enzyme with growing industrial potential &# 34 ; chimica oggia / chemistry today , january / february , 1996 . __________________________________________________________________________ # sequence listing - - - - ( 1 ) general information : - - ( iii ) number of sequences : 8 - - - - ( 2 ) information for seq id no : 1 : - - ( i ) sequence characteristics : ( a ) length : 52 nucl - # eotides - - ( b ) type : nucleic a - # cid - - ( c ) strandedness : sing - # le - - ( d ) topology : linear - - - - ( ii ) molecule type : dna - - ( xi ) sequence description : seq id no : - # 1 : - - ccgagaattc attaaagagg agaaattaac tatgaataac gcatccgctg ac - # 52 - - - - ( 2 ) information for seq id no : 2 : - - ( i ) sequence characteristics : ( a ) length : 31 nucl - # eic acid - - ( b ) type : nucleic a - # cid - - ( c ) strandedness : sing - # le - - ( d ) topology : linear - - - - ( ii ) molecule type : dna - - ( xi ) sequence description : seq id no : - # 2 : - - cggaaagctt ttacgacgcg acgtcgaaac g - # - # 31 - - - - ( 2 ) information for seq id no : 3 : - - ( i ) sequence characteristics : ( a ) length : 52 nucl - # eotides - - ( b ) type : nucleic a - # cid - - ( c ) strandedness : sing - # le - - ( d ) topology : linear - - - - ( ii ) molecule type : dna - - ( xi ) sequence description : seq id no : - # 3 : - - ccgagaattc attaaagagg agaaattaac tatggaaaat cacaaacact ca - # 52 - - - - ( 2 ) information for seq id no : 4 : - - ( i ) sequence characteristics : ( a ) length : 31 nucl - # eotides - - ( b ) type : nucleic a - # cid - - ( c ) strandedness : sing - # le - - ( d ) topology : linear - - - - ( ii ) molecule type : dna - - ( xi ) sequence description : seq id no : - # 4 : - - cgaaggtacc ttatttcaga tcaaaccggt c - # - # 31 - - - - ( 2 ) information for seq id no : 5 : - - ( i ) sequence characteristics : ( a ) length : 2262 nu - # cleotides - - ( b ) type : nucleic a - # cid - - ( c ) strandedness : sing - # le - - ( d ) topology : linear - - - - ( ii ) molecule type : oligonucleotide - - ( xi ) sequence description : seq id no : - # 5 : - - atg aat aac gca tcc gct gac gat cta cac ag - # t agc ttg cag caa aga 48 met asn asn ala ser ala asp asp leu his se - # r ser leu gln gln arg 5 - # 10 - # 15 - - tgc aga gca ttt gtt ccc ttg gta tcg cca ag - # g cat aga gca ata agg 96 cys arg ala phe val pro leu val ser pro ar - # g his arg ala ile arg 20 - # 25 - # 30 - - gag aga gct atg agc ggt aaa tgt cct gtc at - # g cac ggt ggt aac acc144 glu arg ala met ser gly lys cys pro val me - # t his gly gly asn thr 35 - # 40 - # 45 - - tcg acc ggt act tcc aac aaa gat tgg tgg cc - # g gaa ggg ttg aac ctg192 ser thr gly thr ser asn lys asp trp trp pr - # o glu gly leu asn leu50 - # 55 - # 60 - - gat att ttg cat cag caa gat cgc aaa tca ga - # c ccg atg gat ccg gat240 asp ile leu his gln gln asp arg lys ser as - # p pro met asp pro asp 65 - # 70 - # 75 - # 80 - - ttc aac tac cgt gaa gaa gta cgc aag ctc ga - # t ttc gac gcg ctg aag288 phe asn tyr arg glu glu val arg lys leu as - # p phe asp ala leu lys 85 - # 90 - # 95 - - aaa gat gtc cac gcg ttg atg acc gat agc ca - # a gag tgg tgg ccc gct336 lys asp val his ala leu met thr asp ser gl - # n glu trp trp pro ala 100 - # 105 - # 110 - - gac tgg ggg cac tac ggc ggt ttg atg atc cg - # t atg gct tgg cac tcc384 asp trp gly his tyr gly gly leu met ile ar - # g met ala trp his ser 115 - # 120 - # 125 - - gct ggc acc tac cgt att gct gat ggc cgt gg - # g ggc ggt ggt acc gga432 ala gly thr tyr arg ile ala asp gly arg gl - # y gly gly gly thr gly130 - # 135 - # 140 - - agc cag cgc ttt gca ccg ctc aac tcc tgg cc - # g gac aac gtc agc ctg480 ser gln arg phe ala pro leu asn ser trp pr - # o asp asn val ser leu 145 1 - # 50 1 - # 55 1 -# 60 - - gat aaa gcg cgc cgt ctg ctg tgg ccg atc aa - # g aag aag tac ggcaac 528 asp lys ala arg arg leu leu trp pro ile ly - # s lys lys tyr gly asn 165 - # 170 - # 175 - - aaa atc agc tgg gca gac ctg atg att ctg gc - # t ggc acc gtg gct tat576 lys ile ser trp ala asp leu met ile leu al - # a gly thr val ala tyr 180 - # 185 - # 190 - - gag tcc atg ggc tta cct gct tac ggc ttc tc - # t ttc ggc cgc gtc gat624 glu ser met gly leu pro ala tyr gly phe se - # r phe gly arg val asp 195 - # 200 - # 205 - - att tgg gaa ccc gaa aaa gat atc tac tgg gg - # t gac gaa aaa gag tgg672 ile trp glu pro glu lys asp ile tyr trp gl - # y asp glu lys glu trp210 - # 215 - # 220 - - ctg gca cct tct gac gaa cgc tac ggc gac gt - # g aac aag cca gag acc720 leu ala pro ser asp glu arg tyr gly asp va - # l asn lys pro glu thr 225 2 - # 30 2 - # 35 2 -# 40 - - atg gaa aac ccg ctg gcg gct gtc caa atg gg - # t ctg atc tat gtgaac 768 met glu asn pro leu ala ala val gln met gl - # y leu ile tyr val asn 245 - # 250 - # 255 - - ccg gaa ggt gtt aac ggc cac cct gat ccg ct - # g aga acc gca cag cag816 pro glu gly val asn gly his pro asp pro le - # u arg thr ala gln gln 260 - # 265 - # 270 - - gta ctt gaa acc ttc gcc cgt atg gcg atg aa - # c gac gaa aaa acc gca864 val leu glu thr phe ala arg met ala met as - # n asp glu lys thr ala 275 - # 280 - # 285 - - gcc ctc aca gct ggc ggc cac acc gtc ggt aa - # t tgt cac ggt aat ggc912 ala leu thr ala gly gly his thr val gly as - # n cys his gly asn gly290 - # 295 - # 300 - - aat gcc tct gcg tta gcc cct gac cca aaa gc - # c tct gac gtt gaa aac960 asn ala ser ala leu ala pro asp pro lys al - # a ser asp val glu asn 305 3 - # 10 3 - # 15 3 -# 20 - - cag ggc tta ggt tgg ggc aac ccc aac atg ca - # g ggc aag gca agcaac 1008 gln gly leu gly trp gly asn pro asn met gl - # n gly lys ala ser asn 325 - # 330 - # 335 - - gcc gtg acc tcg ggt atc gaa ggt gct tgg ac - # c acc aac ccc acg aaa 1056 ala val thr ser gly ile glu gly ala trp th - # r thr asn pro thr lys 340 - # 345 - # 350 - - ttc gat atg ggc tat ttc gac ctg ctg ttc gg - # c tac aat tgg gaa ctg 1104 phe asp met gly tyr phe asp leu leu phe gl - # y tyr asn trp glu leu 355 - # 360 - # 365 - - aaa aag agt cct gcc ggt gcc cac cat tgg ga - # a ccg att gac atc aaa 1152 lys lys ser pro ala gly ala his his trp gl - # u pro ile asp ile lys370 - # 375 - # 380 - - aag gaa aac aag ccg gtt gac gcc agc gac cc - # c tct att cgc cac aac 1200 lys glu asn lys pro val asp ala ser asp pr - # o ser ile arg his asn 385 3 - # 90 3 - # 95 4 -# 00 - - ccg atc atg acc gat gcg gat atg gcg ata aa - # g gta aat ccg acctat 1248 pro ile met thr asp ala asp met ala ile ly - # s val asn pro thr tyr 405 - # 410 - # 415 - - cgc gct atc tgc gaa aaa ttc atg gcc gat cc - # t gag tac ttc aag aaa 1296 arg ala ile cys glu lys phe met ala asp pr - # o glu tyr phe lys lys 420 - # 425 - # 430 - - act ttc gcg aag gcg tgg ttc aag ctg acg ca - # c cgt gac ctg ggc ccg 1344 thr phe ala lys ala trp phe lys leu thr hi - # s arg asp leu gly pro 435 - # 440 - # 445 - - aaa tca cgt tac atc ggc ccg gaa gtg ccg gc - # a gaa gac ctg att tgg 1392 lys ser arg tyr ile gly pro glu val pro al - # a glu asp leu ile trp450 - # 455 - # 460 - - caa gac ccg att ccg gca ggt aac acc gac ta - # c tgc gaa gaa gtg gtc 1440 gln asp pro ile pro ala gly asn thr asp ty - # r cys glu glu val val 465 4 - # 70 4 - # 75 4 -# 80 - - aag cag aaa att gca caa agt ggc ctg agc at - # t agt gag atg gtctcc 1488 lys gln lys ile ala gln ser gly leu ser il - # e ser glu met val ser 485 - # 490 - # 495 - - acc gct tgg gac agt gcc cgt act tat cgc gg - # t tcc gat atg cgc ggc 1536 thr ala trp asp ser ala arg thr tyr arg gl - # y ser asp met arg gly 500 - # 505 - # 510 - - ggt gct aac ggt gcc cgc att cgc ttg gcc cc - # a cag aac gag tgg cag 1584 gly ala asn gly ala arg ile arg leu ala pr - # o gln asn glu trp gln 515 - # 520 - # 525 - - ggc aac gag ccg gag cgc ctg gcg aaa gtg ct - # g agc gtc tac gag cag 1632 gly asn glu pro glu arg leu ala lys val le - # u ser val tyr glu gln530 - # 535 - # 540 - - atc tct gcc gac acc ggc gct agc atc gcg ga - # c gtg atc gtt ctg gcc 1680 ile ser ala asp thr gly ala ser ile ala as - # p val ile val leu ala 545 5 - # 50 5 - # 55 5 -# 60 - - ggt agc gta ggc atc gag aaa gcc gcg aaa gc - # a gca ggt tac gatgtg 1728 gly ser val gly ile glu lys ala ala lys al - # a ala gly tyr asp val 565 - # 570 - # 575 - - cgc gtt ccc ttc ctg aaa ggc cgt ggc gat gc - # g acc gcc gag atg acc 1776 arg val pro phe leu lys gly arg gly asp al - # a thr ala glu met thr 580 - # 585 - # 590 - - gac gca gac tcc ttc gca ccg ctg gag ccg ct - # g gcc gat ggc ttc cgc 1824 asp ala asp ser phe ala pro leu glu pro le - # u ala asp gly phe arg 595 - # 600 - # 605 - - aac tgg cag aag aaa gag tat gtg gtg aag cc - # g gaa gag atg ctg ctg 1872 asn trp gln lys lys glu tyr val val lys pr - # o glu glu met leu leu610 - # 615 - # 620 - - gat cgt gcg cag ctg atg ggc tta acc ggc cc - # g gaa atg acc gtg ctg 1920 asp arg ala gln leu met gly leu thr gly pr - # o glu met thr val leu 625 6 - # 30 6 - # 35 6 -# 40 - - ctg ggc ggt atg cgc gta ctg ggc acc aac ta - # t ggt ggc acc aaacac 1968 leu gly gly met arg val leu gly thr asn ty - # r gly gly thr lys his 645 - # 650 - # 655 - - ggc gta ttc acc gat tgt gaa ggc cag ttg ac - # c aac gac ttt ttt gtg 2016 gly val phe thr asp cys glu gly gln leu th - # r asn asp phe phe val 655 - # 660 - # 665 - - aac ctg acc gat atg ggg aac agc tgg aag cc - # g gta ggt agc aac gcc 2064 asn leu thr asp met gly asn ser trp lys pr - # o val gly ser asn ala 670 - # 675 - # 680 - - tac gaa atc cgc gac cgc aag acc ggt gcc gt - # g aag tgg acc gcc tcg 2112 tyr glu ile arg asp arg lys thr gly ala va - # l lys trp thr ala ser685 - # 690 - # 700 - - cgg gtg gat ctg gta ttt ggt tcc aac tcg ct - # a ctg cgc tct tac gca 2160 arg val asp leu val phe gly ser asn ser le - # u leu arg ser tyr ala 705 7 - # 10 7 - # 15 7 -# 20 - - gaa gtg tac gcc cag gac gat aac ggc gag aa - # g ttc gtc aga gacttc 2208 glu val tyr ala gln asp asp asn gly glu ly - # s phe val arg asp phe 725 - # 730 - # 735 - - gtc gcc gcc tgg acc aaa gtg atg aac gcc ga - # c cgt ttc gac gtc gcg 2256 val ala ala trp thr lys val met asn ala as - # p arg phe asp val ala 740 - # 745 - # 750 - - tcg taa - # - # -# 2262 ser - - - - ( 2 ) information for seq id no : 6 : - - ( i ) sequence characteristics : ( a ) length : 753 ami - # no acids - - ( b ) type : amino aci - # d - - ( d ) topology : linear - - - - ( ii ) molecule type : polypeptide - - ( xi ) sequence description : seq id no : - # 6 : - - met asn asn ala ser ala asp asp leu his se - # r ser leu gln glnarg 5 - # 10 - # 15 - - cys arg ala phe val pro leu val ser pro ar - # g his arg ala ile arg 20 - # 25 - # 30 - - glu arg ala met ser gly lys cys pro val me - # t his gly gly asn thr 35 - # 40 - # 45 - - ser thr gly thr ser asn lys asp trp trp pr - # o glu gly leu asn leu50 - # 55 - # 60 - - asp ile leu his gln gln asp arg lys ser as - # p pro met asp pro asp 65 - # 70 - # 75 - # 80 - - phe asn tyr arg glu glu val arg lys leu as - # p phe asp ala leu lys 85 - # 90 - # 95 - - lys asp val his ala leu met thr asp ser gl - # n glu trp trp pro ala 100 - # 105 - # 110 - - asp trp gly his tyr gly gly leu met ile ar - # g met ala trp his ser 115 - # 120 - # 125 - - ala gly thr tyr arg ile ala asp gly arg gl - # y gly gly gly thr gly130 - # 135 - # 140 - - ser gln arg phe ala pro leu asn ser trp pr - # o asp asn val ser leu 145 1 - # 50 1 - # 55 1 -# 60 - - asp lys ala arg arg leu leu trp pro ile ly - # s lys lys tyr glyasn 165 - # 170 - # 175 - - lys ile ser trp ala asp leu met ile leu al - # a gly thr val ala tyr 180 - # 185 - # 190 - - glu ser met gly leu pro ala tyr gly phe se - # r phe gly arg val asp 195 - # 200 - # 205 - - ile trp glu pro glu lys asp ile tyr trp gl - # y asp glu lys glu trp210 - # 215 - # 220 - - leu ala pro ser asp glu arg tyr gly asp va - # l asn lys pro glu thr 225 2 - # 30 2 - # 35 2 -# 40 - - met glu asn pro leu ala ala val gln met gl - # y leu ile tyr valasn 245 - # 250 - # 255 - - pro glu gly val asn gly his pro asp pro le - # u arg thr ala gln gln 260 - # 265 - # 270 - - val leu glu thr phe ala arg met ala met as - # n asp glu lys thr ala 275 - # 280 - # 285 - - ala leu thr ala gly gly his thr val gly as - # n cys his gly asn gly290 - # 295 - # 300 - - asn ala ser ala leu ala pro asp pro lys al - # a ser asp val glu asn 305 3 - # 10 3 - # 15 3 -# 20 - - gln gly leu gly trp gly asn pro asn met gl - # n gly lys ala serasn 325 - # 330 - # 335 - - ala val thr ser gly ile glu gly ala trp th - # r thr asn pro thr lys 340 - # 345 - # 350 - - phe asp met gly tyr phe asp leu leu phe gl - # y tyr asn trp glu leu 355 - # 360 - # 365 - - lys lys ser pro ala gly ala his his trp gl - # u pro ile asp ile lys370 - # 375 - # 380 - - lys glu asn lys pro val asp ala ser asp pr - # o ser ile arg his asn 385 3 - # 90 3 - # 95 4 -# 00 - - pro ile met thr asp ala asp met ala ile ly - # s val asn pro thrtyr 405 - # 410 - # 415 - - arg ala ile cys glu lys phe met ala asp pr - # o glu tyr phe lys lys 420 - # 425 - # 430 - - thr phe ala lys ala trp phe lys leu thr hi - # s arg asp leu gly pro 435 - # 440 - # 445 - - lys ser arg tyr ile gly pro glu val pro al - # a glu asp leu ile trp450 - # 455 - # 460 - - gln asp pro ile pro ala gly asn thr asp ty - # r cys glu glu val val 465 4 - # 70 4 - # 75 4 -# 80 - - lys gln lys ile ala gln ser gly leu ser il - # e ser glu met valser 485 - # 490 - # 495 - - thr ala trp asp ser ala arg thr tyr arg gl - # y ser asp met arg gly 500 - # 505 - # 510 - - gly ala asn gly ala arg ile arg leu ala pr - # o gln asn glu trp gln 515 - # 520 - # 525 - - gly asn glu pro glu arg leu ala lys val le - # u ser val tyr glu gln530 - # 535 - # 540 - - ile ser ala asp thr gly ala ser ile ala as - # p val ile val leu ala 545 5 - # 50 5 - # 55 5 -# 60 - - gly ser val gly ile glu lys ala ala lys al - # a ala gly tyr aspval 565 - # 570 - # 575 - - arg val pro phe leu lys gly arg gly asp al - # a thr ala glu met thr 580 - # 585 - # 590 - - asp ala asp ser phe ala pro leu glu pro le - # u ala asp gly phe arg 595 - # 600 - # 605 - - asn trp gln lys lys glu tyr val val lys pr - # o glu glu met leu leu610 - # 615 - # 620 - - asp arg ala gln leu met gly leu thr gly pr - # o glu met thr val leu 625 6 - # 30 6 - # 35 6 -# 40 - - leu gly gly met arg val leu gly thr asn ty - # r gly gly thr lyshis 645 - # 650 - # 655 - - gly val phe thr asp cys glu gly gln leu th - # r asn asp phe phe val 660 - # 665 - # 670 - - asn leu thr asp met gly asn ser trp lys pr - # o val gly ser asn ala 675 - # 680 - # 685 - - tyr glu ile arg asp arg lys thr gly ala va - # l lys trp thr ala ser690 - # 695 - # 700 - - arg val asp leu val phe gly ser asn ser le - # u leu arg ser tyr ala 705 7 - # 10 7 - # 15 7 -# 20 - - glu val tyr ala gln asp asp asn gly glu ly - # s phe val arg aspphe 725 - # 730 - # 735 - - val ala ala trp thr lys val met asn ala as - # p arg phe asp val ala 740 - # 745 - # 750 - - ser - - - - ( 2 ) information for seq id no : 7 : - - ( i ) sequence characteristics : ( a ) length : 2238 nu - # cleotides - - ( b ) type : nucleic a - # cid - - ( c ) strandedness : sing - # le - - ( d ) topology : linear - - - - ( ii ) molecule type : dna - - ( xi ) sequence description : seq id no : - # 7 : - - atg gaa aat cac aaa cac tca gga tct tct ac - # g tat aac aca aac act 48 met glu asn his lys his ser gly ser ser th - # r tyr asn thr asn thr 5 - # 10 - # 15 - - ggc gga aaa tgc cct ttt acc gga ggt tcg ct - # t aag caa agt gca ggt 96 gly gly lys cys pro phe thr gly gly ser le - # u lys gln ser ala gly 20 - # 25 - # 30 - - ggc ggc acc aaa aac agg gat tgg tgg ccc aa - # c atg ctc aac ctc ggc144 gly gly thr lys asn arg asp trp trp pro as - # n met leu asn leu gly 35 - # 40 - # 45 - - atc tta cgc caa cat tca tcg cta tcg gac cc - # a aac gac ccg gat ttt192 ile leu arg gln his ser ser leu ser asp pr - # o asn asp pro asp phe50 - # 55 - # 60 - - gac tat gcc gaa gag ttt aag aag cta gat ct - # g gca gcg gtt aaa aag240 asp tyr ala glu glu phe lys lys leu asp le - # u ala ala val lys lys 65 - # 70 - # 75 - # 80 - - gac ctg gca gcg cta atg aca gat tca cag ga - # c tgg tgg cca gca gat288 asp leu ala ala leu met thr asp ser gln as - # p trp trp pro ala asp 85 - # 90 - # 95 - - tac ggt cat tat ggc ccc ttc ttt ata cgc at - # g gcg tgg cac agc gcc336 tyr gly his tyr gly pro phe phe ile arg me - # t ala trp his ser ala 100 - # 105 - # 110 - - ggc acc tac cgt atc ggt gat ggc cgt ggt gg - # c ggt ggc tcc ggc tca384 gly thr tyr arg ile gly asp gly arg gly gl - # y gly gly ser gly ser 115 - # 120 - # 125 - - cag cgc ttc gcg cct ctc aat agc tgg cca ga - # c aat gcc aat ctg gat432 gln arg phe ala pro leu asn ser trp pro as - # p asn ala asn leu asp130 - # 135 - # 140 - - aaa gca cgc ttg ctt ctt tgg ccc atc aaa ca - # a aaa tac ggt cga aaa480 lys ala arg leu leu leu trp pro ile lys gl - # n lys tyr gly arg lys 145 1 - # 50 1 - # 55 1 -# 60 - - atc tcc tgg gcg gat cta atg ata ctc aca gg - # a aac gta gct ctggaa 528 ile ser trp ala asp leu met ile leu thr gl - # y asn val ala leu glu 165 - # 170 - # 175 - - act atg ggc ttt aaa act ttt ggt ttt gca gg - # t ggc aga gca gat gta576 thr met gly phe lys thr phe gly phe ala gl - # y gly arg ala asp val 180 - # 185 - # 190 - - tgg gag cct gaa gaa gat gta tac tgg gga gc - # a gaa acc gaa tgg ctg624 trp glu pro glu glu asp val tyr trp gly al - # a glu thr glu trp leu 195 - # 200 - # 205 - - gga gac aag cgc tat gaa ggt gac cga gag ct - # c gaa aat ccc ctg gga672 gly asp lys arg tyr glu gly asp arg glu le - # u glu asn pro leu gly210 - # 215 - # 220 - - gcc gta caa atg gga ctc atc tat gta aac cc - # c gaa gga ccc aac ggc720 ala val gln met gly leu ile tyr val asn pr - # o glu gly pro asn gly 225 2 - # 30 2 - # 35 2 -# 40 - - aag cca gac cct atc gct gct gcg cgt gat at - # t cgt gag act tttggc 768 lys pro asp pro ile ala ala ala arg asp il - # e arg glu thr phe gly 245 - # 250 - # 255 - - cga atg gca atg aat gac gaa gaa acc gtg gc - # t ctc ata gcg ggt gga816 arg met ala met asn asp glu glu thr val al - # a leu ile ala gly gly 260 - # 265 - # 270 - - cac acc ttc gga aaa acc cat ggt gct gcc ga - # t gcg gag aaa tat gtg864 his thr phe gly lys thr his gly ala ala as - # p ala glu lys tyr val 275 - # 280 - # 285 - - ggc cga gag cct gcc gcc gca ggt att gaa ga - # a atg agc ctg ggg tgg912 gly arg glu pro ala ala ala gly ile glu gl - # u met ser leu gly trp290 - # 295 - # 300 - - aaa aac acc tac ggc acc gga cac ggt gcg ga - # t acc atc acc agt gga960 lys asn thr tyr gly thr gly his gly ala as - # p thr ile thr ser gly 305 3 - # 10 3 - # 15 3 -# 20 - - cta gaa ggc gcc tgg acc aag acc cct act ca - # a tgg agc aat aacttt 1008 leu glu gly ala trp thr lys thr pro thr gl - # n trp ser asn asn phe 325 - # 330 - # 335 - - ttt gaa aac ctc ttt ggt tac gag tgg gag ct - # t acc aaa agt cca gct 1056 phe glu asn leu phe gly tyr glu trp glu le - # u thr lys ser pro ala 340 - # 345 - # 350 - - gga gct tat cag tgg aaa cca aaa gac ggt gc - # c ggg gct ggc acc ata 1104 gly ala tyr gln trp lys pro lys asp gly al - # a gly ala gly thr ile 355 - # 360 - # 365 - - ccg gat gca cat gat ccc agc aag tcg cac gc - # t cca ttt atg ctc act 1152 pro asp ala his asp pro ser lys ser his al - # a pro phe met leu thr370 - # 375 - # 380 - - acg gac ctg gcg ctg cgc atg gac cct gat ta - # c gaa aaa att tct cga 1200 thr asp leu ala leu arg met asp pro asp ty - # r glu lys ile ser arg 385 3 - # 90 3 - # 95 4 -# 00 - - cgg tac tat gaa aac cct gat gag ttt gca ga - # t gct ttc gcg aaagca 1248 arg tyr tyr glu asn pro asp glu phe ala as - # p ala phe ala lys ala 405 - # 410 - # 415 - - tgg tac aaa ctg aca cac aga gat atg gga cc - # a aag gtg cgc tac ctg 1296 trp tyr lys leu thr his arg asp met gly pr - # o lys val arg tyr leu 420 - # 425 - # 430 - - gga cca gaa gtg cct cag gaa gac ctc atc tg - # g caa gac cct ata cca 1344 gly pro glu val pro gln glu asp leu ile tr - # p gln asp pro ile pro 435 - # 440 - # 445 - - gat gta agc cat cct ctt gta gac gaa aac ga - # t att gaa ggc cta aaa 1392 asp val ser his pro leu val asp glu asn as - # p ile glu gly leu lys450 - # 455 - # 460 - - gcc aaa atc ctg gaa tcg gga ctg acg gta ag - # c gag ctg gta agc acg 1440 ala lys ile leu glu ser gly leu thr val se - # r glu leu val ser thr 465 4 - # 70 4 - # 75 4 -# 80 - - gca tgg gct tct gca tct act ttt aga aac tc - # t gac aag cgc ggcggt 1488 ala trp ala ser ala ser thr phe arg asn se - # r asp lys arg gly gly 485 - # 490 - # 500 - - gcc aac ggt gca cgt ata cga ctg gcc cca ca - # a aaa gac tgg gaa gta 1536 ala asn gly ala arg ile arg leu ala pro gl - # n lys asp trp glu val 505 - # 510 - # 515 - - aac aac cct cag caa ctt gcc agg gta ctc aa - # a aca cta gaa ggt atc 1584 asn asn pro gln gln leu ala arg val leu ly - # s thr leu glu gly ile 520 - # 525 - # 530 - - cag gag gac ttt aac cag gcg caa tca gat aa - # c aaa gca gta tcg ttg 1632 gln glu asp phe asn gln ala gln ser asp as - # n lys ala val ser leu535 - # 540 - # 545 - - gcc gac ctg att gtg ctg gcc ggc tgt gcg gg - # t gta gaa aaa gct gca 1680 ala asp leu ile val leu ala gly cys ala gl - # y val glu lys ala ala 550 5 - # 55 5 - # 60 5 -# 65 - - aaa gat gct ggc cat gag gtg cag gtg cct tt - # c aac ccg gga cgagcg 1728 lys asp ala gly his glu val gln val pro ph - # e asn pro gly arg ala 570 - # 575 - # 580 - - gat gcc acc gct gag caa acc gat gtg gaa gc - # t ttc gaa gca cta gag 1776 asp ala thr ala glu gln thr asp val glu al - # a phe glu ala leu glu 585 - # 590 - # 595 - - cca gcg gct gac ggc ttt aga aac tac att aa - # a ccg gag cat aaa gta 1824 pro ala ala asp gly phe arg asn tyr ile ly - # s pro glu his lys val 600 - # 605 - # 610 - - tcc gct gag gaa atg ctc gta gac cgg gcg ca - # g ctt ctg tcg ctt tcg 1872 ser ala glu glu met leu val asp arg ala gl - # n leu leu ser leu ser615 - # 620 - # 625 - - gca cca gaa atg act gct ttg gta ggc ggt at - # g cgt gta ctg ggc acc 1920 ala pro glu met thr ala leu val gly gly me - # t arg val leu gly thr 630 6 - # 35 6 - # 40 6 -# 45 - - aac tac gac ggt tcg cag cat gga gtg ttt ac - # a aat aag ccg ggtcag 1968 asn tyr asp gly ser gln his gly val phe th - # r asn lys pro gly gln 650 - # 655 - # 660 - - cta tcc aat gac ttc ttt gta aac ctg cta ga - # c ctc aac act aaa tgg 2016 leu ser asn asp phe phe val asn leu leu as - # p leu asn thr lys trp 665 - # 670 - # 675 - - cga gcc agc gat gaa tca gac aaa gtt ttt ga - # a ggc aga gac ttc aaa 2064 arg ala ser asp glu ser asp lys val phe gl - # u gly arg asp phe lys 680 - # 685 - # 690 - - act ggc gaa gta aag tgg agt ggc acc cgg gt - # a gac ctg atc ttc gga 2112 thr gly glu val lys trp ser gly thr arg va - # l asp leu ile phe gly695 - # 700 - # 710 - - tcc aat tcc gag cta aga gcc ctc gca gaa gt - # g tac ggc tgt gca gat 2160 ser asn ser glu leu arg ala leu ala glu va - # l tyr gly cys ala asp 715 7 - # 20 7 - # 25 7 -# 30 - - tct gaa gaa aag ttt gtt aaa gat ttt gtg aa - # g gcc tgg gcc aaagta 2208 ser glu glu lys phe val lys asp phe val ly - # s ala trp ala lys val 735 - # 740 - # 745 - - atg gac ctg gac cgg ttt gat ctg aaa taa - # - # 2238 met asp leu asp arg phe asp leu lys 750 - # 755 - - - - ( 2 ) information for seq id no : 8 : - - ( i ) sequence characteristics : ( a ) length : 745 ami - # no acids - - ( b ) type : amino aci - # d - - ( d ) topology : linear - - - - ( ii ) molecule type : - - ( xi ) sequence description : seq id no : - # 8 : - - met glu asn his lys his ser gly ser ser th - # r tyr asn thr asn thr 5 - # 10 - # 15 - - gly gly lys cys pro phe thr gly gly ser le - # u lys gln ser ala gly 20 - # 25 - # 30 - - gly gly thr lys asn arg asp trp trp pro as - # n met leu asn leu gly 35 - # 40 - # 45 - - ile leu arg gln his ser ser leu ser asp pr - # o asn asp pro asp phe50 - # 55 - # 60 - - asp tyr ala glu glu phe lys lys leu asp le - # u ala ala val lys lys 65 - # 70 - # 75 - # 80 - - asp leu ala ala leu met thr asp ser gln as - # p trp trp pro ala asp 85 - # 90 - # 95 - - tyr gly his tyr gly pro phe phe ile arg me - # t ala trp his ser ala 100 - # 105 - # 110 - - gly thr tyr arg ile gly asp gly arg gly gl - # y gly gly ser gly ser 115 - # 120 - # 125 - - gln arg phe ala pro leu asn ser trp pro as - # p asn ala asn leu asp130 - # 135 - # 140 - - lys ala arg leu leu leu trp pro ile lys gl - # n lys tyr gly arg lys 145 1 - # 50 1 - # 55 1 -# 60 - - ile ser trp ala asp leu met ile leu thr gl - # y asn val ala leuglu 165 - # 170 - # 175 - - thr met gly phe lys thr phe gly phe ala gl - # y gly arg ala asp val 180 - # 185 - # 190 - - trp glu pro glu glu asp val tyr trp gly al - # a glu thr glu trp leu 195 - # 200 - # 205 - - gly asp lys arg tyr glu gly asp arg glu le - # u glu asn pro leu gly210 - # 215 - # 220 - - ala val gln met gly leu ile tyr val asn pr - # o glu gly pro asn gly 225 2 - # 30 2 - # 35 2 -# 40 - - lys pro asp pro ile ala ala ala arg asp il - # e arg glu thr phegly 245 - # 250 - # 255 - - arg met ala met asn asp glu glu thr val al - # a leu ile ala gly gly 260 - # 265 - # 270 - - his thr phe gly lys thr his gly ala ala as - # p ala glu lys tyr val 275 - # 280 - # 285 - - gly arg glu pro ala ala ala gly ile glu gl - # u met ser leu gly trp290 - # 295 - # 300 - - lys asn thr tyr gly thr gly his gly ala as - # p thr ile thr ser gly 305 3 - # 10 3 - # 15 3 -# 20 - - leu glu gly ala trp thr lys thr pro thr gl - # n trp ser asn asnphe 325 - # 330 - # 335 - - phe glu asn leu phe gly tyr glu trp glu le - # u thr lys ser pro ala 340 - # 345 - # 350 - - gly ala tyr gln trp lys pro lys asp gly al - # a gly ala gly thr ile 355 - # 360 - # 365 - - pro asp ala his asp pro ser lys ser his al - # a pro phe met leu thr370 - # 375 - # 380 - - thr asp leu ala leu arg met asp pro asp ty - # r glu lys ile ser arg 385 3 - # 90 3 - # 95 400 - - arg tyr tyr glu asn pro asp glu phe ala as - # p ala phe ala lys ala 405 - # 410 - # 415 - - trp tyr lys leu thr his arg asp met gly pr - # o lys val arg tyr leu 420 - # 425 - # 430 - - gly pro glu val pro gln glu asp leu ile tr - # p gln asp pro ile pro 435 - # 440 - # 445 - - asp val ser his pro leu val asp glu asn as - # p ile glu gly leu lys450 - # 455 - # 460 - - ala lys ile leu glu ser gly leu thr val se - # r glu leu val ser thr 465 4 - # 70 4 - # 75 4 -# 80 - - ala trp ala ser ala ser thr phe arg asn se - # r asp lys arg glygly 485 - # 490 - # 495 - - ala asn gly ala arg ile arg leu ala pro gl - # n lys asp trp glu val 500 - # 505 - # 510 - - asn asn pro gln gln leu ala arg val leu ly - # s thr leu glu gly ile 515 - # 520 - # 525 - - gln glu asp phe asn gln ala gln ser asp as - # n lys ala val ser leu530 - # 535 - # 540 - - ala asp leu ile val leu ala gly cys ala gl - # y val glu lys ala ala 545 5 - # 50 5 - # 55 5 -# 60 - - lys asp ala gly his glu val gln val pro ph - # e asn pro gly argala 565 - # 570 - # 575 - - asp ala thr ala glu gln thr asp val glu al - # a phe glu ala leu glu 580 - # 585 - # 590 - - pro ala ala asp gly phe arg asn tyr ile ly - # s pro glu his lys val 595 - # 600 - # 605 - - ser ala glu glu met leu val asp arg ala gl - # n leu leu ser leu ser610 - # 615 - # 620 - - ala pro glu met thr ala leu val gly gly me - # t arg val leu gly thr 625 6 - # 30 6 - # 35 6 -# 40 - - asn tyr asp gly ser gln his gly val phe th - # r asn lys pro glygln 645 - # 650 - # 655 - - leu ser asn asp phe phe val asn leu leu as - # p leu asn thr lys trp 660 - # 665 - # 670 - - arg ala ser asp glu ser asp lys val phe gl - # u gly arg asp phe lys 675 - # 680 - # 685 - - thr gly glu val lys trp ser gly thr arg va - # l asp leu ile phe gly690 - # 695 - # 700 - - ser asn ser glu leu arg ala leu ala glu va - # l tyr gly cys ala asp 705 7 - # 10 7 - # 15 7 -# 20 - - ser glu glu lys phe val lys asp phe val ly - # s ala trp ala lysval 725 - # 730 - # 735 - - met asp leu asp arg phe asp leu lys 740 - # 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