Datasets:

damlab
/

HIV_PI

License:

Dataset card Files Files and versions Community

Dataset Viewer

Split (1)

train · 1.73k rows

sequence stringlengths 99 114	id stringlengths 4 6	FPV bool 2 classes	IDV bool 2 classes	NFV bool 2 classes	SQV bool 2 classes	fold int32 0 4
PQITLWQRPLVTIKIGGQLKEALLDTGADNTVLEEMNLPGRWKPKMIGGIGGFIKVGQYDQILIEICGHKAIGTVLVGPTPVNIIGRDLLTQIGCTLNF	12861	false	false	true	false	3
PQITLWQRPLVTIKIGGQLKEALLDTGADNTVLEEMNLPGRWKPKIIGGIGGFIKVGQYDQIPIEICGHKAIGTVLVGPTPVNIIGRDLLTQIGCTLNF	12862	false	false	true	false	4
PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKIIGGIGGFIKVGQYDQIPIEICGHKAIGTVLVGPTPTNVIGRNLLTQIGCTLNF	12863	false	false	false	false	4
PQITLWQRPRVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKIIGGIGGFIKVGQYDQIPIEICGHKAIGTVLVGPTPTNVIGRNLLTQIGCTLNF	12864	true	false	false	false	0
PQITLWQRPIVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVGQYDQIPIEICGHKVIGTVLVGPTPVNVIGRNLMTQIGCTLNF	12865	false	false	true	true	1
PQITLWQRPIVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKIIGGIGGFIKVGQYDQIPIEICGHKVIGTVLVGPTPVNVIGRNLMTQIGCTLNF	12866	true	true	true	true	1
PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIVGIGGFIKVGQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLMTQIGCTLNF	12867	false	false	false	true	1
PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVGQYDQILIEICGHKAIGTVLVGPTPVNIIGRSLLTQIGCTLNF	13255	false	false	false	false	2
PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVGQYDQIPIEICGHKAIGTVLVGPTPVNIIGRSLLTQIGCTLNF	13256	false	false	true	false	3
PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKLIGGIGGFIKVGQYDQIPIEICGHKAIGTVLVGPTPVNIIGRSLLTQIGCTLNF	13257	false	false	true	false	4
PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVGQYDQIPIEICGHKAIGTVLIGPTPVNIIGRSLLTQIGCTLNF	13258	false	false	true	false	4
PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKLIGGIGGFIKVGQYDQIPIEICGHKAIGTVLIGPTPVNIIGRSLLTQIGCTLNF	13259	false	false	true	false	2
PQITLWQRPLVTIKIGGQLTEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVGQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF	13260	false	false	false	false	2
PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVGQYDQIPIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF	13261	false	false	false	false	0
PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVGQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQIGCTLNF	13262	false	false	false	false	0
PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIVGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLMTQIGCTLNF	54392	false	true	true	true	4
PQITLWQRPRVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKIIGGIGGFIKVRQYDQIPIEICGHKAIGTVLVGPTPTNVIGRNLLTQIGCTLNF	54393	false	true	true	false	0
PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPFNVIGRNLLTQIGCTLNF	54394	false	false	false	false	1
PQITLWQRPLVTIKIGGQLKEALLDTGADNTVLEEMNLPGRWKPKIIGGIGGFIKVRQYDQILIEICGHKAIGTVLIGPTPVNIIGRNLLTQIGCTLNF	54395	false	false	true	false	2
PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEINLPGRWKPKMIGGVGGFIKVRQYDQIPIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF	54396	true	false	false	false	0
PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKLIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPANIIGRNLMTQIGCTLNF	54397	false	false	false	false	3
PQITLWQRPIVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYDQIPIEICGHKTIGTVLVGPTPVNVIGRNLMTQIGCTLNF	54398	false	false	true	true	4
PQITLWQRPIVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKIIGGIGGFIKVRQYDQIPIEICGHKTIGTVLVGPTPVNVIGRNLMTQIGCTLNF	54399	false	false	true	true	2
PQITLWQRPIVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKIIGGIGGFIKVRQYDQIPIEICGHKVISTVLVGPTPTNIIGRNLMTQIGCTLNF	54400	false	true	true	true	2
PQITLWQRPIVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKIIGGIGGFIKVRQYDQIPIEICGHKVIGTVLIGPTPVNVIGRDLMTQIGCTLNF	54401	true	true	true	true	3
PQITLWQRPIVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIMGIGGFVKVRQYDQIPIEICGHKIIGTVLIGPTPANIIGRNLMTQIGCTLNF	54402	true	true	true	true	3
PQITLWQRPFVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF	54407	false	false	false	false	0
PQITLWQRPFVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNVIGRNLLTQIGCTLNF	54408	true	false	false	false	1
PQITLWQRPFVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKIIGGVGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF	54409	true	false	false	false	3
PQITLWQRPFVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKIVGGVGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF	54410	true	false	true	false	0
PQITLWQRPFVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNVIGRNLLTQIGCTLNF	54411	true	false	false	false	3
PQITLWQRPFVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKIIGGVGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF	54412	true	false	false	false	2
PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRSLLTQIGCTLNF	54447	false	false	false	false	3
PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLVGPTPVNIIGRSLLTQIGCTLNF	54448	false	false	true	false	4
PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKLIGGIGGFIKVRQYDQIPIEICGHKAIGTVLVGPTPVNIIGRSLLTQIGCTLNF	54449	false	false	true	false	1
PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRSLLTQIGCTLNF	54450	false	false	true	false	3
PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKLIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRSLLTQIGCTLNF	54451	false	false	true	false	3
PQITLWQRPLVTIKIGGQLTEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF	54452	false	false	false	false	3
PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF	54453	false	false	false	false	2
PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQIGCTLNF	54454	false	false	false	false	1
PQITLWQRPLVTIKIGGQLKEAILDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVGQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF	60082	false	false	false	false	3
PQITLWQRPLVTIKIGGQLREALLDTGADDTVLEEMTLPGRWKPKMIGGIGGFIKVGQYDQIPIEICGHKAISTVLIGPTPINIIGRNLLTQLGCTLNF	60084	false	false	false	false	4
PQITLWQRPIVTIKIGGQLIEALLDTGADVDTVLEEMDLPGRKWKPKMIIGGIGGFIKVRQYDQVPIEICGHRATITSTVLVGPTPVNVIGRNLMTQIGCTLNF	8093	false	true	true	true	2
PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVKQYDQIPIEICGHKAIGTVLVGPTPVNIIGRNLLTQLGCTLNF	206443	false	false	false	false	3
...TLWQRPLVTVKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYDQIPILEICGHKAIGTVLIGPTPVNIIGRNLLTQIGCTLNF	65115	false	false	false	false	4
PQITLWQRPVVTVKVAGQLTEALLDTGADDTVLEEMNLPGRWKPKLIGGIGGFIRVRQYDQVPIEFCGHKTLMGTVLIGPTPVNIIGRNLMTQIGCTLNF	75100	false	true	true	true	1
PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEDMSLPGKWKPKMIGGIGGFIKVGQYDQIVAIEICGHKAIVGTVLVGPTPVNIIGRNLLTQIGCTLNF	259219	false	false	false	false	4
...TLWQRPLVTVKIGGQLKEALLDTGADDTVLEDMNLPGRWKPKMIGGIGGFIKVRQYDQIPIEICGHKVIGTVLIGPTPVNIIGRNLLTQLGCTLNF	64841	false	false	false	false	0
PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKLIGGIGGFVKVRQYDQVLVEICGHKAIGTVLVGPTPANIIGRNLLTQIGCTLNF	75060	false	false	true	false	4
PQITLWQRPLVPIRIGGQLKEALLDTGADDTVLEEMNSLPGKWKPKMIGGIGGFIKVRQYDNITIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNF	56964	false	false	false	false	1
PQITLWQRPVVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKIIGGIGGFIKVRQYDQIAPIEICGHKVIGTVLVGPTPVNAIGRNLLTQIGCTLNF	54173	true	true	true	true	1
PQITLWQRPIVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKIVGGIGGFVKVRQYDQIPIEICGHKTIGTVLVGPTPVNVIGRNLLTQIGCTLNF	54184	true	true	true	true	4
PQITLWQRPIVTIKIGGQLREALIDTGADDTVFEEINLPGRWKPKIIGGIGGFVKVRQYDQIPIEICGHKTISTVLVGPTPINVIGRNLLTQIGCTLNF	54189	true	true	true	true	1
PQITLWQRPIVVTIVKIGGQLREALLDTGADDTVLEEINLPGRWKPKMIGGIGGFVKVRQYDQVPILEICGHKVIVGTVLVGPTPATNIIGRNLLMTQIGCTLNF	143338	false	true	true	false	4
PQITLWQRPVVTIKIGGQLKEAILDTGADDTVLEEMNLPGRWKPKMIGGIGGLVKVKQYDQIPIEICGHKVIGTVLVGPTPANIIGRNLMTQIGCTLNF	53515	false	true	true	true	0
PQITLWQRPIVTIKIGGQLKEAILDTGADDTVLEEMNLPGRWKPKLIGGIGGFVKVKQYDQIPIEICGHKVIGTVLVGPTPANVIGRNLMTKIGCTLNF	53517	true	true	true	true	1
PQITLWQRPLVTVKIGGQITEALLDTGADDTVLEGINLPGKWKPKMIGGIGGFIKVGQYDQVTVEICGHKATGSVLIGPTPVNIIGRNLMTQIGCTLNF	259227	true	true	true	true	0
PQITLWQRPLVTIKIGGQLVEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGLIKVRQYDQIPIEICGHKVISTVLIGPTPVNIIVGRNLMTQIGCTLNF	98102	false	true	true	true	0
...TLWQRPIVTIKIVGGQLMEALIDTGADDTIFEEINLPGKWKPKIVGGIGGFMKVRQYDQVPIEICGHKRAVGSVLVGPTPINVIGRNMLTQIGCTLNF	112437	true	true	true	true	4
...TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVKQYEQILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF	64897	false	false	false	false	0
PQITLWQRPIVTVKIGGQIKEALLSDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYDQVPIEICGHKTITSTVLIGPTPVNVIGRNLMTQIGCTLNF	38836	false	true	true	true	4
...TLWQRPLITVKIGGQVREALLDTGADDTVIEDIDLPGRWKPKMIGGIGGFVKVKQYEQVPIEICGYKIMGTVLVGPTPANIIGRDLMTQIGCTLNF	112427	true	false	true	true	2
PQITLWQRPIVDIKIGGQIKEALLDTGADDTVLEKEMINLPGRWKPKIIGGIGGFIKVRQYDQIPIEKICGHKVISTVLIGPTPVNVIGRNLMTQLGCTLNF	90000	true	true	true	true	3
PQITLWQRPLVTIKIVGGQLKEALLDTGADDTVLEEMNLPGRWKRPKMIGGIGGFIKVRQYDQVPIEICGHKAIVGTVLIGPTPVNIIGRNLLMTQLGCTLNF	109474	false	false	false	false	1
PQITLWQRPIVTIKIGGQLKEALLDTGADDTVLEDMSLPGRWKPKIIGGIGGFIKVRQYDQIPIEICGHKTIGTVLIGPTPVNIIGRSLLTQIGCTLNF	13244	false	true	true	false	2
PQITLWQRPFVTIMKRIGGQLIEALIDTGADDTVLEDINLPGKWKPKLIGAGIGGFVKRVRQYEQVPIVEICGHKVIGTVLVGPTPANVIGRNLLTSQIGCTLNF	143471	true	true	true	true	2
PQITLWQRPIVTIKIGGQLIEALIDTGADDTVLEDINLPGKWKPKLIGGIGGFVKVRQYEQIPVEICGHKVIGTVLVGPTPANVIGRNLLTQIGCTLNF	55889	true	true	true	true	4
PQITLWQRPLVSIRVGGQIKEALLDTGADDTVLEEVNLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGKRAIGTVLVGPTPVNIIGRNMLTQLGCTLNF	68343	false	false	false	false	3
PQITLWQRPLVTIKIGGHIKEALLDTGADDTVLEEMNLPGRWKPKLIGGIGGFIKVRQYDQIPIEICGHKAIGTVLVGPTPVNIIGRNLMTRLGFTLNF	26105	false	true	true	false	4
PQITLWQRPLVTIKIGGQIKEALLDTGADDTVLEEMNLPGRWKPKLIGGIGGFVKVRQYDQIPIEICGHKAIGTVLVGPTPANIIGRNLLMTQLGCTLNF	26103	false	false	true	false	2
PQITLWQRPFVTIKIGGQLKEALLDTGADNTVLEEMNLPGRWKPKMIGGIGGFIKVRQYDQIPIEICGHKTIGTVLIGPTPVNIIGRDLMTQIGCTLNF	29046	false	true	true	true	2
PQITLWQRPIVTVKIGGQLLEALLDTGADDTVLEEMNLPGRWKPKIIGGIGGFIKVREYDQVPIEICGHKTIGSVLIGPTPVNIIGRSLMTKIGCTLNF	147551	false	true	true	true	4
PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPRMIGGLGGFIKVRQYDQIPLEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNF	45098	false	false	false	false	4
PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPLMIGGIGGFIKVRQYDQIPLEICGHKAVGTVLIGPTPVNIIGRNLLTQLGCTLNF	45097	false	false	false	false	2
PQITLWQRPFVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYDQIAIEICGHKVIGTVLVGPTPVNVIGRNLMTQIGCTLNF	66670	true	true	true	true	1
PQITLWQRPIVTIKIVGGQLKEALILDTGADGDTVLEEMNLPGRWKPKMIGGILGGFIKRVRQYDQIPIEICGHKAEGSTVLVGPTPVNIVIGRNLLTQLGCTLNF	117009	false	false	false	false	3
PQITLWQRPIVTIKVGGQLMEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYDQIPIEICGHKVISTVLVGADTPVNVIGRKNLMTQLGCTLNF	115059	true	true	true	true	2
PQITLWQRPIVTVKIVGGQVKEALLDTGADDTVFEEMNLPGRWKTPKRMIGGIGGFVKVRQYDQIVPIEICGHKVIGPVLVGPTPLNVIGRNLMTQIMGCTLNF	116529	true	true	true	true	1
PQITLWQRPIVNVKIGGQLKEALLDTGADDTVFEEMNLPGRWKPKLIGGIGGFIVKVRQYDQHIPVEICGHKVIGPVLIGPTPFNVIGRNLMTQLGCTLNF	116489	true	true	true	true	4
PQITLWQRPIVTIKIGGQLKEALIDTGADDTVFEEMSLPGRWKPKLIGGIGGFVKRVRQYDQIVPIEICGHKVIMGCSTVLVGPTPANIIGRNLLTQIGCTLNF	115069	true	true	true	true	1
PQITLWQRPIVTIKIGGQLKEALIDTGADDTVLEEMNLPGRWKPKLIGGIGGFVKVRQYEQIPVEICGHKVIGTVLVGPTPANVIGRNLLTQIGCTLNF	42159	true	true	true	true	0
PQITLWQRPIVTIKIGGQLREALLDTGADDTVLEEINLPGRWKPKMIGGIGGFVKVRQYDQIMVPIEICGHKVIGTVLVGPTPTNIIGRNLMTQIGCTLNF	117067	false	true	true	true	1
PQITLWQRPRVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKLIGGIGGFIKVRQYDQIPIEICGHKTTGTVLVIGPTPVNIIGRNLLTQILGCTLNF	38822	false	false	true	false	2
PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYDQVPIEICGHKAIGTVLVGPTPVNIIGRNLLTEIGCTLNF	46685	false	false	false	false	1
PQITLWQRPSVTVRIGGQLIETLLDTGADDTVLEDINLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGKKAIGTVLVGPTPINIIGRNMLTQIGCTLNF	28773	false	false	false	false	2
...TLWQRPIVTVKIAGQLKEALLDTGADDTVLEEMDLPQGRKWKPKIVGGIGGFIKVKQYDQIPIEICGHKAVGTVVVGPTPVNCIGRNILTQIGCTLNF	112908	true	true	true	true	1
PQITLWQRPLVTIKIGGQTKEALLDTGADDTVLEEMDLPGRWRPKMIGGIGGFIKVGQYDQIXIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF	216631	false	false	false	false	2
PQITLWQRPLVVTIKVGGQLKEALLDTGADDTVLEEMIXLPGKWKPKMIGGIGGFIKVRQYDQISIEICGHKATGTVLVGPTPVNIIGRNLLTQIGCTLNF	187165	false	false	false	false	1
...TLWQRPFVTIVKVGGQLKEALLDTGADDTVFEDINDLPGKWKPKMLIGGIGGFVKVRQYDQVPIEICGHKVLSTVLVGPTPANIIGRNLMTQIGCTLNF	112883	true	true	true	true	1
PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAVGTVLVGPTPVNIIGRNLLTQIGCTLNF	81859	false	false	false	false	4
PQITLWQRPIVVTVKIGGQLKEALLDTGADDTIFEEMNLPGRWKPKMIVGGIGGFLKVRQYDQVPIEICGHKVISTVLVIGPSTPVNVIGRNLMTQIGCTLNF	28231	true	true	true	true	1
PQITLWQRPVVTVRIEGQIITEALLDTGADDTVLEDINLTGRWKPKMIGGIGGFLVKVRQYDQVLIEFCGKKAVIGSVLVGPTPVNIIGRNMLTQIGCTLNF	143350	false	true	true	true	2
PQITLWQRPLVTVKIGGQLKEALLDTGADDTVLEEMTLPGRWKPKMIGGIGGFIKVRQYDQIEVDICGHKAIGTVLIGPTPVNIIGRNLLTQIGCTLNF	109482	false	false	false	false	4
........PLVTVKIGGQPIEALLDTGADDTVLEEISLPGKWKPKMIGGIGGFIKVRQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLI.	15563	false	false	false	false	0
PQITLWQRPLVASIKIVGGQLIKEALLDTGADDTVLEEIDLPGRWKPKMIGGIGGFIKVRQYDQVPIEICGHKAIMGTVLVGPTPVNIIGRNLLTQIGCTLNF	109442	false	false	false	false	4
PQITLWQRPIVTIKIGGQLKEALLIDTGADDTVLFEEMILNLPGKWKPKMLIGVGIGGFIVKRVGEYDQIVPIVEICGHKAIATTVLVGPTPVANIVIGRNLLMTAQIGCTLNF	235693	true	true	true	true	1
PQITLWQRPIVTIKIGGQLKEALLDTGADDTVFEDMDLPGKWKPKLIGGIGGFLKVRQYDQVPIEICGHKITIGTVILVGPTPANIIGRNLMTQLGCTLNF	81887	true	true	true	false	2
PQITLWQRPIVTVKIGGQLREALLDTGADDTVFEDISLPGKWKPKLIGGIGGFMKVRQYDQVPIEICGHKVIGTVLVGATPVNVIGRNLVMTQIGCTLNF	51575	true	true	true	true	1
PQITLWQRPIVTIKVGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFVKVRQYDQIPIEICGHKVIGTVLVGPTPANVVGRNLMTQIGCTLNF	38794	false	true	true	true	1
PQITLWQRPFIVTIKIGGQLKEALLDTGADDTVLEEMNLPGKWRPKMIIGGIGGFIVKVRQYDQIPIEICGHKAIGTVLVGPTPATNIIGRNLLTQLGCTLNF	52895	false	true	true	false	3

End of preview. Expand in Dataset Viewer.

Dataset Description

Dataset Summary

This dataset was derived from the Stanford HIV Genotype-Phenotype database and contains 1,733 HIV protease sequences. A pproximately half of the sequences are resistant to at least one antiretroviral therapeutic (ART).

Supported Tasks and Leaderboards: None

Languages: English

Dataset Structure

Data Instances

Each column represents the protein amino acid sequence of the HIV protease protein. The ID field indicates the Genbank reference ID for future cross-referencing. There are 1,733 total protease sequences.

Data Fields: ID, sequence, fold, FPV, IDV, NFV, SQV

Data Splits: None

Dataset Creation

Curation Rationale: This dataset was curated to train a model (HIV-BERT-PI) designed to predict whether an HIV protease sequence would result in resistance to certain antiretroviral (ART) drugs.

Initial Data Collection and Normalization: Dataset was downloaded and curated on 12/21/2021.

Considerations for Using the Data

Social Impact of Dataset: Due to the tendency of HIV to mutate, drug resistance is a common issue when attempting to treat those infected with HIV. Protease inhibitors are a class of drugs that HIV is known to develop resistance via mutations. Thus, by providing a collection of protease sequences known to be resistant to one or more drugs, this dataset provides a significant collection of data that could be utilized to perform computational analysis of protease resistance mutations.

Discussion of Biases: Due to the sampling nature of this database, it is predominantly composed of subtype B sequences from North America and Europe with only minor contributions of Subtype C, A, and D. Currently, there was no effort made to balance the performance across these classes. As such, one should consider refinement with additional sequences to perform well on non-B sequences.

Additional Information:

Dataset Curators: Will Dampier
Citation Information: TBA

Downloads last month: 137

Edit dataset card

Size of downloaded dataset files:

69.2 kB

Size of the auto-converted Parquet files:

69.2 kB

Number of rows:

1,733